Query psy12253
Match_columns 149
No_of_seqs 143 out of 747
Neff 7.9
Searched_HMMs 46136
Date Fri Aug 16 22:39:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12253.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12253hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03144 Carbon catabolite rep 100.0 2E-31 4.3E-36 227.6 13.3 139 6-148 382-601 (606)
2 COG5239 CCR4 mRNA deadenylase, 99.7 3.6E-18 7.7E-23 136.8 7.1 134 11-148 174-366 (378)
3 KOG2338|consensus 99.7 2.5E-16 5.5E-21 130.6 10.9 65 80-148 416-494 (495)
4 KOG0620|consensus 99.5 9.7E-15 2.1E-19 119.1 3.8 65 80-148 286-352 (361)
5 COG3568 ElsH Metal-dependent h 99.4 7E-12 1.5E-16 97.8 10.3 120 11-148 117-258 (259)
6 PRK11756 exonuclease III; Prov 99.2 5.6E-11 1.2E-15 93.0 9.3 78 57-147 186-268 (268)
7 TIGR03395 sphingomy sphingomye 98.9 1.2E-08 2.7E-13 81.0 9.6 124 11-144 119-282 (283)
8 TIGR00195 exoDNase_III exodeox 98.8 1.2E-08 2.6E-13 79.2 6.6 75 57-145 175-254 (254)
9 PRK05421 hypothetical protein; 98.8 1.3E-07 2.8E-12 74.2 11.6 38 97-149 226-263 (263)
10 PTZ00297 pantothenate kinase; 98.6 5.6E-07 1.2E-11 84.7 12.8 46 98-148 270-315 (1452)
11 KOG3873|consensus 98.3 2E-06 4.3E-11 69.9 7.5 117 25-149 126-294 (422)
12 PRK15251 cytolethal distending 98.1 1.5E-05 3.2E-10 63.0 7.1 38 97-143 226-268 (271)
13 TIGR00633 xth exodeoxyribonucl 98.0 4.6E-05 1E-09 58.6 8.4 73 57-146 178-255 (255)
14 PRK13911 exodeoxyribonuclease 97.8 6.7E-05 1.5E-09 58.7 6.3 65 68-145 181-249 (250)
15 COG3021 Uncharacterized protei 97.7 0.00015 3.3E-09 58.1 7.3 102 24-148 185-308 (309)
16 COG0708 XthA Exonuclease III [ 97.6 4.5E-05 9.8E-10 60.0 2.3 70 67-147 187-261 (261)
17 KOG2756|consensus 97.2 0.00054 1.2E-08 54.2 4.9 123 19-146 196-348 (349)
18 smart00476 DNaseIc deoxyribonu 95.5 0.015 3.2E-07 46.3 3.3 35 6-40 120-155 (276)
19 PF03372 Exo_endo_phos: Endonu 95.3 0.069 1.5E-06 39.3 6.3 15 26-40 119-133 (249)
20 PF14529 Exo_endo_phos_2: Endo 94.3 0.092 2E-06 35.2 4.4 34 97-142 86-119 (119)
21 smart00128 IPPc Inositol polyp 92.2 1.5 3.2E-05 35.3 9.0 28 11-40 124-151 (310)
22 PLN03191 Type I inositol-1,4,5 89.0 6 0.00013 35.0 10.2 27 11-39 406-432 (621)
23 COG2374 Predicted extracellula 84.9 1.5 3.2E-05 39.5 4.5 29 11-39 605-633 (798)
24 KOG0566|consensus 84.4 5 0.00011 37.2 7.5 29 10-40 658-686 (1080)
25 KOG1294|consensus 83.4 1.4 3.1E-05 36.1 3.5 67 68-146 264-334 (335)
26 smart00476 DNaseIc deoxyribonu 69.2 2.7 5.9E-05 33.5 1.4 12 133-144 263-274 (276)
27 PF04334 DUF478: Protein of un 63.0 14 0.0003 22.4 3.2 30 11-40 9-38 (68)
28 COG5411 Phosphatidylinositol 5 46.8 9.6 0.00021 32.4 1.0 36 101-148 292-327 (460)
29 KOG3846|consensus 40.4 5.4 0.00012 32.8 -1.3 19 129-147 160-178 (465)
30 PF05220 MgpC: MgpC protein pr 39.0 43 0.00093 25.0 3.3 32 9-40 4-35 (224)
31 PTZ00312 inositol-1,4,5-tripho 27.6 66 0.0014 26.3 2.9 17 24-40 77-93 (356)
32 PF09671 Spore_GerQ: Spore coa 27.5 68 0.0015 20.7 2.4 21 19-39 52-72 (81)
33 PF14202 TnpW: Transposon-enco 25.0 1.3E+02 0.0028 16.4 2.9 17 25-41 7-23 (37)
34 PF11082 DUF2880: Protein of u 23.8 38 0.00083 21.4 0.7 15 133-147 59-73 (79)
No 1
>PLN03144 Carbon catabolite repressor protein 4 homolog; Provisional
Probab=99.97 E-value=2e-31 Score=227.63 Aligned_cols=139 Identities=30% Similarity=0.519 Sum_probs=115.8
Q ss_pred hhcCCCcc-----EEEEEEEeecc---------CCCEEEEEeecCCCCcHH----------HHHHHHHhc----------
Q psy12253 6 MKRGAPRQ-----VAVLLVLRNKK---------TQEEICIATTHLKARNGA----------LLSTLRNEQ---------- 51 (149)
Q Consensus 6 ~w~~~~~r-----v~~~~~l~~~~---------tg~~~~v~NTHLd~~~~~----------ll~~i~~~~---------- 51 (149)
.|+++++| ||++++|+++. .++.|+|+||||+|++.. |++.|++..
T Consensus 382 ~~~~~l~Rl~kdNVAliv~Le~k~~~~~~~~~~~~~~l~VaNTHL~~~p~~~dvRl~Q~~~Ll~~l~~~~~~~~~PvIlc 461 (606)
T PLN03144 382 QKKAALNRLLKDNVALIVVLEAKFGNQGADNGGKRQLLCVANTHIHANQELKDVKLWQVHTLLKGLEKIAASADIPMLVC 461 (606)
T ss_pred cchhhhhhhccCcEEEEEEEEEecccccccCCCCccEEEEEEeeeccCCccchhHHHHHHHHHHHHHHHhhcCCCceEEe
Confidence 47777877 89999999983 357899999999988641 455555431
Q ss_pred -----CCCchhHHHHHhC------------------------CCCCchhhhhhhhc-----------------CCCCCce
Q psy12253 52 -----EPTEPIYNTVMNH------------------------ETLGLTSAYRHRTA-----------------NNQEPQY 85 (149)
Q Consensus 52 -----~P~s~~y~~l~~~------------------------~~~~l~say~~~~~-----------------~~~~p~f 85 (149)
+|+|++|++|+++ ++++|.|||..+.. .+++|.|
T Consensus 462 GDFNS~P~S~vy~lLt~G~v~~~h~d~~~~~~~~~~~~~~l~H~~~L~SAY~~~~~~~g~~~~~~~~~~r~~~~~geP~f 541 (606)
T PLN03144 462 GDFNSVPGSAPHCLLATGKVDPLHPDLAVDPLGILRPASKLTHQLPLVSAYSSFARMPGSGSGLEQQRRRMDPATNEPLF 541 (606)
T ss_pred ccCCCCCCChhhhhhhcCCcCCCchhhccCccccccccccccCCCcccchhhhhccccccccchhhhhhccccccCCCCc
Confidence 8999999999853 24678999975421 1469999
Q ss_pred eeeeeccCCCeeeeeeEEEeeCCcceEEEeeeCCCccccCCC-CCCCCCCCCCceeeEEEEEEc
Q psy12253 86 TTWKIREEGEVCHTIDYVFYSQDKFDVEAVLDMPSGEQIGRD-RIPSLRYPSDHFSLVCDLTLK 148 (149)
Q Consensus 86 T~~~~~~~~~~~~~IDYIf~~~~~~~v~~~~~~~~~~~i~~~-~lp~~~~PSDH~pv~a~~~~~ 148 (149)
|||+ ++|.++||||||+++.++|.+++++|+++++.+. +|||..|||||+||+|+|+|+
T Consensus 542 TNyt----~~F~gtlDYIfys~~~L~v~~vL~lp~e~~l~~~~gLPn~~~PSDHI~L~AeF~~~ 601 (606)
T PLN03144 542 TNCT----RDFIGTLDYIFYTADSLTVESLLELLDEESLRKDTALPSPEWSSDHIALLAEFRCK 601 (606)
T ss_pred eeec----CCcceeEEEEEEcCCCceEEeecCCCCHHHhcccCCCCCCCCCCccccEeEEEEec
Confidence 9999 8999999999999888999999999999999874 999999999999999999996
No 2
>COG5239 CCR4 mRNA deadenylase, exonuclease subunit and related nucleases [RNA processing and modification]
Probab=99.74 E-value=3.6e-18 Score=136.82 Aligned_cols=134 Identities=24% Similarity=0.395 Sum_probs=90.1
Q ss_pred CccEEEEEEEeeccCCCEEEEEeecCCCCcHH----------HHHHHHHhc-----------------------------
Q psy12253 11 PRQVAVLLVLRNKKTQEEICIATTHLKARNGA----------LLSTLRNEQ----------------------------- 51 (149)
Q Consensus 11 ~~rv~~~~~l~~~~tg~~~~v~NTHLd~~~~~----------ll~~i~~~~----------------------------- 51 (149)
+..+++++.++++++|..++|+|||+.|++.. +++++++..
T Consensus 174 ~~w~~l~~~l~n~e~gd~~~va~Th~~w~~~~~dvk~iq~s~l~~~~k~~~~e~~~~d~~~~d~k~~~~~~~l~~gd~ns 253 (378)
T COG5239 174 IAWVCLFVGLFNKEPGDTPYVANTHLPWDPKYRDVKLIQCSLLYRELKKVLKEELNDDKEEGDIKSYPEVDILITGDFNS 253 (378)
T ss_pred cchhheeeeeccCCCCCceeEEeccccccCCCCchheehhhHHHHHHHHHhhhcCCcchhccccccCcccccccCCCccc
Confidence 33667888999999999999999999999632 344443211
Q ss_pred CCCchhHHHHHhC-----C-----CCCchhh-hhh-----h--hcCCCCCceeeeeeccCCCeeeeeeEEEeeCC-cceE
Q psy12253 52 EPTEPIYNTVMNH-----E-----TLGLTSA-YRH-----R--TANNQEPQYTTWKIREEGEVCHTIDYVFYSQD-KFDV 112 (149)
Q Consensus 52 ~P~s~~y~~l~~~-----~-----~~~l~sa-y~~-----~--~~~~~~p~fT~~~~~~~~~~~~~IDYIf~~~~-~~~v 112 (149)
.-.|.+|+.|..+ + .+++-+. |.. + ....+++.||||+ ++++|.||||||.++ ..++
T Consensus 254 ~~~s~vy~~l~~~~~q~H~~~~~~~~~lysvg~~~~h~~n~~~~~~~~~~~fTN~t----~~~kG~iDYIfy~~~~~~~~ 329 (378)
T COG5239 254 LRASLVYKFLVTSQIQLHESLNGRDFSLYSVGYKFVHPENLKSDNSKGELGFTNWT----PGFKGVIDYIFYHGGLLTRQ 329 (378)
T ss_pred eecceehhhhhhHHHHhhhcccccchhhhcccccccChhhcccCCCcCCccccccc----ccccceeEEEEEecCcceee
Confidence 1145677777541 0 1111111 110 1 1124589999999 899999999999986 3455
Q ss_pred EEeeeCCCccccCC-CCCCCCCCCCCceeeEEEEEEc
Q psy12253 113 EAVLDMPSGEQIGR-DRIPSLRYPSDHFSLVCDLTLK 148 (149)
Q Consensus 113 ~~~~~~~~~~~i~~-~~lp~~~~PSDH~pv~a~~~~~ 148 (149)
...+...+.+...+ .|+|+..+||||.|+.|+|.+.
T Consensus 330 ~~~l~~ve~e~~~k~~G~pn~~~pSdhipl~~ef~~~ 366 (378)
T COG5239 330 TGLLGVVEGEYASKVIGLPNMPFPSDHIPLLAEFASD 366 (378)
T ss_pred eccccccccchhhhhcccCCCCCccccccchhccccc
Confidence 55554444332222 4999999999999999999874
No 3
>KOG2338|consensus
Probab=99.68 E-value=2.5e-16 Score=130.56 Aligned_cols=65 Identities=32% Similarity=0.566 Sum_probs=55.3
Q ss_pred CCCCceeeeeeccCCCeeeeeeEEEeeCC-------------cceEEEeeeCCCccccCCC-CCCCCCCCCCceeeEEEE
Q psy12253 80 NQEPQYTTWKIREEGEVCHTIDYVFYSQD-------------KFDVEAVLDMPSGEQIGRD-RIPSLRYPSDHFSLVCDL 145 (149)
Q Consensus 80 ~~~p~fT~~~~~~~~~~~~~IDYIf~~~~-------------~~~v~~~~~~~~~~~i~~~-~lp~~~~PSDH~pv~a~~ 145 (149)
.++|.+|+|. ..+.+++||||++++ .+++...+.||..++.... ..|++.|+|||++|+|+|
T Consensus 416 ~gep~vt~~~----~~~~g~~dyif~~~~~~~~~~~~~~~~~~ikl~~~l~ip~~~e~~k~~~p~~~~~~SDH~aL~~~~ 491 (495)
T KOG2338|consen 416 RGEPGVTNYA----LTWKGTLDYIFYSPGDCKQSNREFEEDEAIKLKGLLRIPSPQEMWKAGQPPNGRYGSDHIALVAQF 491 (495)
T ss_pred CCCcceecHH----hhhccceeeEEeccCcccccchhhhcccceeEEEEecCCCHHHhhccCCCCCCCCcccceEeeEee
Confidence 3578888887 578899999999996 6889999999998888664 556789999999999999
Q ss_pred EEc
Q psy12253 146 TLK 148 (149)
Q Consensus 146 ~~~ 148 (149)
++-
T Consensus 492 ~~~ 494 (495)
T KOG2338|consen 492 SLV 494 (495)
T ss_pred Eee
Confidence 874
No 4
>KOG0620|consensus
Probab=99.51 E-value=9.7e-15 Score=119.11 Aligned_cols=65 Identities=31% Similarity=0.590 Sum_probs=55.2
Q ss_pred CCCCceeeeeeccCCCeeeeeeEEEeeCCcceEEEeeeCCCc-ccc-CCCCCCCCCCCCCceeeEEEEEEc
Q psy12253 80 NQEPQYTTWKIREEGEVCHTIDYVFYSQDKFDVEAVLDMPSG-EQI-GRDRIPSLRYPSDHFSLVCDLTLK 148 (149)
Q Consensus 80 ~~~p~fT~~~~~~~~~~~~~IDYIf~~~~~~~v~~~~~~~~~-~~i-~~~~lp~~~~PSDH~pv~a~~~~~ 148 (149)
.+++.||+++ ++|+|+||||||++..+.+...+..+++ +.. +.+++||..+||||+|+.|+|++.
T Consensus 286 ~~~~~ftn~t----~~F~g~~DYIfys~~~~~~~~~L~~~~e~~~~~~~~~lPs~~~pSDHi~L~~ef~~~ 352 (361)
T KOG0620|consen 286 TGEPRFTNYT----PGFKGTLDYIFYSKAALIVESALELLDEDELVIKVTGLPSPHHPSDHIPLLAEFEIA 352 (361)
T ss_pred cCcccccccc----CCccceeeEEEEccccccccccccCCChhhhhcccccCCCCCCCCccchhhcccccc
Confidence 4566799999 8999999999999988888888887773 333 337999999999999999999984
No 5
>COG3568 ElsH Metal-dependent hydrolase [General function prediction only]
Probab=99.36 E-value=7e-12 Score=97.85 Aligned_cols=120 Identities=19% Similarity=0.241 Sum_probs=75.9
Q ss_pred CccEEEEEEEeeccCCCEEEEEeecCCCCcHH---HHHHHHHh------c----------CCCchhHHHHHhCCCCCchh
Q psy12253 11 PRQVAVLLVLRNKKTQEEICIATTHLKARNGA---LLSTLRNE------Q----------EPTEPIYNTVMNHETLGLTS 71 (149)
Q Consensus 11 ~~rv~~~~~l~~~~tg~~~~v~NTHLd~~~~~---ll~~i~~~------~----------~P~s~~y~~l~~~~~~~l~s 71 (149)
.+|.+++|+++.. .|+.|.|+|+||++.... -++.|.+. . +|+|+.|+..... +.....
T Consensus 117 ~~Rgal~a~~~~~-~g~~l~V~~~HL~l~~~~R~~Q~~~L~~~~~l~~~~p~vl~GDFN~~p~s~~yr~~~~~-~~~~~~ 194 (259)
T COG3568 117 EPRGALLAEIELP-GGKPLRVINAHLGLSEESRLRQAAALLALAGLPALNPTVLMGDFNNEPGSAEYRLAARS-PLNAQA 194 (259)
T ss_pred CCceeEEEEEEcC-CCCEEEEEEEeccccHHHHHHHHHHHHhhccCcccCceEEEccCCCCCCCccceeccCC-chhhcc
Confidence 5799999999887 899999999999965432 12222221 1 8999999665443 222233
Q ss_pred hhhhhhcCCC---CCceeeeeeccCCCeeeeeeEEEeeCCcceEEEeeeCCCccccCCCCCCCCCCCCCceeeEEEEEEc
Q psy12253 72 AYRHRTANNQ---EPQYTTWKIREEGEVCHTIDYVFYSQDKFDVEAVLDMPSGEQIGRDRIPSLRYPSDHFSLVCDLTLK 148 (149)
Q Consensus 72 ay~~~~~~~~---~p~fT~~~~~~~~~~~~~IDYIf~~~~~~~v~~~~~~~~~~~i~~~~lp~~~~PSDH~pv~a~~~~~ 148 (149)
+......... .++|..+. + .-+|||||++++ +.+.++-..++ +...--|||+||.|+++++
T Consensus 195 ~~~~~~~~a~~~~~~tfps~~----p--~lriD~Ifvs~~-~~i~~~~v~~~---------~~a~~aSDHlPl~aeL~~~ 258 (259)
T COG3568 195 ALTGAFAPAVGRTIRTFPSNT----P--LLRLDRIFVSKE-LAIRSVHVLTD---------RLARVASDHLPLLAELRLK 258 (259)
T ss_pred ccccccCcccCcccCCCCCCC----c--cccccEEEecCc-ccEEEEEeecC---------CCccccccccceEEEEecC
Confidence 3322211111 23454443 2 248999999984 67766533221 2246789999999999985
No 6
>PRK11756 exonuclease III; Provisional
Probab=99.23 E-value=5.6e-11 Score=93.04 Aligned_cols=78 Identities=18% Similarity=0.301 Sum_probs=46.1
Q ss_pred hHHHHHhCCCCCchhhhhhhhcCCCCCceeeeeeccC---CCeeeeeeEEEeeCCcce--EEEeeeCCCccccCCCCCCC
Q psy12253 57 IYNTVMNHETLGLTSAYRHRTANNQEPQYTTWKIREE---GEVCHTIDYVFYSQDKFD--VEAVLDMPSGEQIGRDRIPS 131 (149)
Q Consensus 57 ~y~~l~~~~~~~l~say~~~~~~~~~p~fT~~~~~~~---~~~~~~IDYIf~~~~~~~--v~~~~~~~~~~~i~~~~lp~ 131 (149)
.++.|.+ .+|.|+|...... ..+.||-|..+.. .....+|||||++++ +. +.++..+.. ...
T Consensus 186 ~~~~l~~---~~l~D~~R~~~p~-~~~~~T~~~~~~~~~~~~~g~RIDyi~~s~~-~~~~v~~~~i~~~--------~~~ 252 (268)
T PRK11756 186 WLDRLMD---WGLVDTFRQLNPD-VNDRFSWFDYRSKGFDDNRGLRIDLILATQP-LAERCVETGIDYD--------IRG 252 (268)
T ss_pred HHHHHHh---CCcEeehhhhCCC-CCCcccCcCCcccccccCCceEEEEEEeCHH-HHhhheEeEEeHH--------HhC
Confidence 3444444 2589999854321 1344554432211 123569999999984 43 555432221 235
Q ss_pred CCCCCCceeeEEEEEE
Q psy12253 132 LRYPSDHFSLVCDLTL 147 (149)
Q Consensus 132 ~~~PSDH~pv~a~~~~ 147 (149)
+.+||||.||+++|++
T Consensus 253 ~~~~SDH~PV~~~~~~ 268 (268)
T PRK11756 253 MEKPSDHAPIWATFKL 268 (268)
T ss_pred CCCCCCcccEEEEEeC
Confidence 6899999999999975
No 7
>TIGR03395 sphingomy sphingomyelin phosphodiesterase. Members of this family are bacterial proteins that act as sphingomyelin phosphodiesterase (EC 3.1.4.12), also called sphingomyelinase. Some members of this family have been shown to act as hemolysins.
Probab=98.89 E-value=1.2e-08 Score=81.02 Aligned_cols=124 Identities=13% Similarity=0.176 Sum_probs=63.6
Q ss_pred CccEEEEEEEeeccCCCEEEEEeecCCCCc--------H-H-------HHHHHHHhc---------------CCCchhHH
Q psy12253 11 PRQVAVLLVLRNKKTQEEICIATTHLKARN--------G-A-------LLSTLRNEQ---------------EPTEPIYN 59 (149)
Q Consensus 11 ~~rv~~~~~l~~~~tg~~~~v~NTHLd~~~--------~-~-------ll~~i~~~~---------------~P~s~~y~ 59 (149)
.+|-++.+.+. ..|+.+.|+||||++.. . . |.+.|++.. .|+++.|+
T Consensus 119 ~~kg~l~a~i~--~~g~~~~v~~THL~~~~~~~~~~~~~~~R~~Q~~~i~~~i~~~~~~~~~pvIl~GDfN~~~~s~~~~ 196 (283)
T TIGR03395 119 SNKGFAYVKIN--KNGKKFHVIGTHLQAQDSMCSKLGPASIRANQLNEIQDFIDSKNIPKDETVLIGGDLNVNKGSNEYH 196 (283)
T ss_pred cCCceEEEEEe--cCCeEEEEEEeCCCCCcccccccccHHHHHHHHHHHHHHHhhccCCCCceEEEEeeCCCCCCCHHHH
Confidence 35666666653 46899999999998741 1 1 344443211 68888887
Q ss_pred HHHhCCCCCchhh-hhhhhcCCCCCceee----eee-ccCCCeeeeeeEEEeeCCcceEEEeeeCCCccccCCCCC-C--
Q psy12253 60 TVMNHETLGLTSA-YRHRTANNQEPQYTT----WKI-REEGEVCHTIDYVFYSQDKFDVEAVLDMPSGEQIGRDRI-P-- 130 (149)
Q Consensus 60 ~l~~~~~~~l~sa-y~~~~~~~~~p~fT~----~~~-~~~~~~~~~IDYIf~~~~~~~v~~~~~~~~~~~i~~~~l-p-- 130 (149)
.|... ++..+. |. +...||.. +.. ..+++...++||||++++..++.+.-.+-. ..+....+ +
T Consensus 197 ~ml~~--l~~~~p~~~-----g~~~T~d~~~N~~a~~~~~~~~~~~lDyvl~~~~~~~p~~~~~~~~-~~~~~~~~~~~~ 268 (283)
T TIGR03395 197 DMFKT--LNVSEPRYV-----GVPATWDATTNSIAKYYYPKEEPEYLDYIFVSKSHAQPPVWQNKVL-DPKSVTSWFKKY 268 (283)
T ss_pred HHHHH--hcccCCCcC-----CCCCCcCCCcCchhhhhcCCCCcceEEEEEEECCCCCCccccceEE-eccccccccccc
Confidence 77543 111111 11 11122211 110 001234469999999986655443211000 00000001 1
Q ss_pred CCCCCCCceeeEEE
Q psy12253 131 SLRYPSDHFSLVCD 144 (149)
Q Consensus 131 ~~~~PSDH~pv~a~ 144 (149)
-...+||||||.|.
T Consensus 269 ~~~~~sdh~~v~~~ 282 (283)
T TIGR03395 269 TYDDFSDHYPVYGF 282 (283)
T ss_pred cccccccccceeee
Confidence 24679999999984
No 8
>TIGR00195 exoDNase_III exodeoxyribonuclease III. The model brings in reverse transcriptases at scores below 50, model also contains eukaryotic apurinic/apyrimidinic endonucleases which group in the same family
Probab=98.80 E-value=1.2e-08 Score=79.17 Aligned_cols=75 Identities=23% Similarity=0.375 Sum_probs=43.1
Q ss_pred hHHHHHhCCCCCchhhhhhhhcCCCCCceeeeeeccC---CCeeeeeeEEEeeCCcce--EEEeeeCCCccccCCCCCCC
Q psy12253 57 IYNTVMNHETLGLTSAYRHRTANNQEPQYTTWKIREE---GEVCHTIDYVFYSQDKFD--VEAVLDMPSGEQIGRDRIPS 131 (149)
Q Consensus 57 ~y~~l~~~~~~~l~say~~~~~~~~~p~fT~~~~~~~---~~~~~~IDYIf~~~~~~~--v~~~~~~~~~~~i~~~~lp~ 131 (149)
.++.+.+ .+|.|+|...... +..||-|..+.. .....+|||||++++ +. +.++...+. ...
T Consensus 175 ~~~~l~~---~~l~D~~r~~~~~--~~~~T~~~~~~~~~~~~~g~RID~i~~s~~-~~~~v~~~~i~~~--------~~~ 240 (254)
T TIGR00195 175 WLDRLLE---AGLVDTFRKFNPD--EGAYSWWDYRTKARDRNRGWRIDYFLVSEP-LKERCVDCGIDYD--------IRG 240 (254)
T ss_pred HHHHHHH---cCCEeeecccCCC--CCCCcccCCcCCccccCCceEEEEEEECHH-HHhhhhEEEEcHH--------Hhc
Confidence 4666654 2589998743222 334554432111 122358999999984 54 555433221 113
Q ss_pred CCCCCCceeeEEEE
Q psy12253 132 LRYPSDHFSLVCDL 145 (149)
Q Consensus 132 ~~~PSDH~pv~a~~ 145 (149)
..+||||.||+++|
T Consensus 241 ~~~~SDH~Pv~~~~ 254 (254)
T TIGR00195 241 SEKPSDHCPVVLEF 254 (254)
T ss_pred CCCCCCcccEEEeC
Confidence 47999999999875
No 9
>PRK05421 hypothetical protein; Provisional
Probab=98.77 E-value=1.3e-07 Score=74.20 Aligned_cols=38 Identities=32% Similarity=0.581 Sum_probs=28.4
Q ss_pred eeeeeEEEeeCCcceEEEeeeCCCccccCCCCCCCCCCCCCceeeEEEEEEcC
Q psy12253 97 CHTIDYVFYSQDKFDVEAVLDMPSGEQIGRDRIPSLRYPSDHFSLVCDLTLKK 149 (149)
Q Consensus 97 ~~~IDYIf~~~~~~~v~~~~~~~~~~~i~~~~lp~~~~PSDH~pv~a~~~~~k 149 (149)
..+|||||++ .+++.++..+ ....|||+||+|+|++++
T Consensus 226 ~~~ID~I~~~--~~~v~~~~v~-------------~~~~SDH~Pv~a~l~l~~ 263 (263)
T PRK05421 226 GRPLDFVFYR--GLNVSKASVL-------------VTRASDHNPLLVEFSLKK 263 (263)
T ss_pred CCCcceEEEC--CcEEEEEEcC-------------CCCCCCccCEEEEEEecC
Confidence 3579999984 3677765311 246899999999999874
No 10
>PTZ00297 pantothenate kinase; Provisional
Probab=98.62 E-value=5.6e-07 Score=84.65 Aligned_cols=46 Identities=30% Similarity=0.390 Sum_probs=32.1
Q ss_pred eeeeEEEeeCCcceEEEeeeCCCccccCCCCCCCCCCCCCceeeEEEEEEc
Q psy12253 98 HTIDYVFYSQDKFDVEAVLDMPSGEQIGRDRIPSLRYPSDHFSLVCDLTLK 148 (149)
Q Consensus 98 ~~IDYIf~~~~~~~v~~~~~~~~~~~i~~~~lp~~~~PSDH~pv~a~~~~~ 148 (149)
.+|||||+++ .+++.+...... .+. .. +...|||||+||+|+|+++
T Consensus 270 ~riD~Ifv~~-~v~v~~~~v~~~--~~~-~~-~~~~~~SDH~Pv~a~l~l~ 315 (1452)
T PTZ00297 270 QRQDYFFVTP-CVQVEKPRIEKF--VVS-SR-RPYTYLSDHFGVSARLTLP 315 (1452)
T ss_pred cceeEEEEeC-CceEEEEEEecc--ccc-CC-CCCCCcCcCccEEEEEEeC
Confidence 5899999987 578877543211 000 01 3468999999999999984
No 11
>KOG3873|consensus
Probab=98.34 E-value=2e-06 Score=69.90 Aligned_cols=117 Identities=21% Similarity=0.345 Sum_probs=67.7
Q ss_pred CCCEEEEEeecCCCCcH-------------H--HHHHHHHh---c-----------CCCchhHHHHHhCCCCCchhhhhh
Q psy12253 25 TQEEICIATTHLKARNG-------------A--LLSTLRNE---Q-----------EPTEPIYNTVMNHETLGLTSAYRH 75 (149)
Q Consensus 25 tg~~~~v~NTHLd~~~~-------------~--ll~~i~~~---~-----------~P~s~~y~~l~~~~~~~l~say~~ 75 (149)
.|+.+-++||||.+.-+ + +.+.|+.. . .|.+-.+++|++ .++.|||..
T Consensus 126 ~g~~v~~yntHLHAeY~rq~D~YL~HR~~QAwdlaqfi~~t~q~~~vVI~~GDLN~~P~dl~~~ll~~---a~l~daw~~ 202 (422)
T KOG3873|consen 126 GGRMVNLYNTHLHAEYDRQNDEYLCHRVAQAWDLAQFIRATRQNADVVILAGDLNMQPQDLGHKLLLS---AGLVDAWTS 202 (422)
T ss_pred CCEEeeeeehhccccccccCchhhhHHHHHHHHHHHHHHHHhcCCcEEEEecCCCCCccccceeeeec---cchhhhHhh
Confidence 46888999999975421 1 23333321 1 899999999884 245566653
Q ss_pred hhcC-----------------CC--CCceeeeee---ccCCCeeeeeeEEEeeCCcceEEEeeeCCCccccCCCCCCCCC
Q psy12253 76 RTAN-----------------NQ--EPQYTTWKI---REEGEVCHTIDYVFYSQDKFDVEAVLDMPSGEQIGRDRIPSLR 133 (149)
Q Consensus 76 ~~~~-----------------~~--~p~fT~~~~---~~~~~~~~~IDYIf~~~~~~~v~~~~~~~~~~~i~~~~lp~~~ 133 (149)
.-.. ++ .-.-++|+. +.+..+..+|||+|++++.+.+.-. .-++.....|...
T Consensus 203 ~h~~q~e~~~~r~s~~~~l~~g~tcd~~~N~y~~aqk~~ddp~~~RiDYvl~k~~~~~~~~a-----~~~~t~~rvP~~d 277 (422)
T KOG3873|consen 203 LHLDQCESDSFRLSEDKELVEGNTCDSPLNCYTSAQKREDDPLGKRIDYVLVKPGDCNAKIA-----EVEFTEPRVPGED 277 (422)
T ss_pred hchhhhcCcccccchhhhhhcCCcccCcchhhhHHHhCCCCccceeeeEEEEcCcceEEEee-----eEEecCCCCCCCC
Confidence 2110 11 111233431 1122346799999999975433321 0112222457666
Q ss_pred CC-CCceeeEEEEEEcC
Q psy12253 134 YP-SDHFSLVCDLTLKK 149 (149)
Q Consensus 134 ~P-SDH~pv~a~~~~~k 149 (149)
++ |||++++|.+.+.+
T Consensus 278 ~s~SDH~Al~a~L~I~~ 294 (422)
T KOG3873|consen 278 CSYSDHEALMATLKIFK 294 (422)
T ss_pred CCccchhhheeEEEeec
Confidence 66 99999999999853
No 12
>PRK15251 cytolethal distending toxin subunit CdtB; Provisional
Probab=98.06 E-value=1.5e-05 Score=63.03 Aligned_cols=38 Identities=24% Similarity=0.287 Sum_probs=22.4
Q ss_pred eeeeeEEEeeCC-cce----EEEeeeCCCccccCCCCCCCCCCCCCceeeEE
Q psy12253 97 CHTIDYVFYSQD-KFD----VEAVLDMPSGEQIGRDRIPSLRYPSDHFSLVC 143 (149)
Q Consensus 97 ~~~IDYIf~~~~-~~~----v~~~~~~~~~~~i~~~~lp~~~~PSDH~pv~a 143 (149)
.++||||+..+. .++ +.+.+.+. . -...+.|||+||.-
T Consensus 226 ~~~IDYiv~~~s~~~~~~~~i~a~l~~~--------~-~~~~~aSDH~PV~f 268 (271)
T PRK15251 226 GGTLDYAVTGNSNQTFGPPLLAASLMLA--------S-LRSQLASDHFPVNF 268 (271)
T ss_pred CCeeEEEEecCccccccccchheeeeec--------c-cccccccCcccccc
Confidence 358999998653 123 22222111 1 13688999999963
No 13
>TIGR00633 xth exodeoxyribonuclease III (xth). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.98 E-value=4.6e-05 Score=58.57 Aligned_cols=73 Identities=26% Similarity=0.423 Sum_probs=38.6
Q ss_pred hHHHHHhCCCCCchhhhhhhhcCCCCCceeeeeecc---CCCeeeeeeEEEeeCCcce--EEEeeeCCCccccCCCCCCC
Q psy12253 57 IYNTVMNHETLGLTSAYRHRTANNQEPQYTTWKIRE---EGEVCHTIDYVFYSQDKFD--VEAVLDMPSGEQIGRDRIPS 131 (149)
Q Consensus 57 ~y~~l~~~~~~~l~say~~~~~~~~~p~fT~~~~~~---~~~~~~~IDYIf~~~~~~~--v~~~~~~~~~~~i~~~~lp~ 131 (149)
.++.+.. .+|.|+|.... ....+.||-|..+. ......+|||||++++ +. +.+.....
T Consensus 178 ~~~~~~~---~~l~D~~~~~~-~~~~~~~T~~~~~~~~~~~~~~~rID~i~~s~~-~~~~~~~~~i~~------------ 240 (255)
T TIGR00633 178 WFDELLE---AGLVDTFRHFN-PDTEGAYTWWDYRSGARDRNRGWRIDYFLVSEP-LAERVVDSYIDS------------ 240 (255)
T ss_pred HHHHHHH---cCCEecchhhC-CCCCCcCcCcCCccCccccCCceEEEEEEECHH-HHhhhcEeEECC------------
Confidence 3555544 25888886432 21123455433211 1123358999999884 32 33332111
Q ss_pred CCCCCCceeeEEEEE
Q psy12253 132 LRYPSDHFSLVCDLT 146 (149)
Q Consensus 132 ~~~PSDH~pv~a~~~ 146 (149)
....|||.||+++++
T Consensus 241 ~~~~SDH~pv~~~~~ 255 (255)
T TIGR00633 241 EIRGSDHCPIVLELD 255 (255)
T ss_pred CCCCCCcccEEEEEC
Confidence 112399999999873
No 14
>PRK13911 exodeoxyribonuclease III; Provisional
Probab=97.78 E-value=6.7e-05 Score=58.68 Aligned_cols=65 Identities=25% Similarity=0.333 Sum_probs=39.0
Q ss_pred CchhhhhhhhcCCCCCceeeeeecc---CCCeeeeeeEEEeeCCcc-eEEEeeeCCCccccCCCCCCCCCCCCCceeeEE
Q psy12253 68 GLTSAYRHRTANNQEPQYTTWKIRE---EGEVCHTIDYVFYSQDKF-DVEAVLDMPSGEQIGRDRIPSLRYPSDHFSLVC 143 (149)
Q Consensus 68 ~l~say~~~~~~~~~p~fT~~~~~~---~~~~~~~IDYIf~~~~~~-~v~~~~~~~~~~~i~~~~lp~~~~PSDH~pv~a 143 (149)
+|.|++.... ...+..||-|..+. ......+|||||++++-. ++.++.. ....++|||.||++
T Consensus 181 gl~D~~R~~~-p~~~~~yTww~~~~~~~~~n~g~RIDyilvs~~~~~~~~~~~i------------~~~~~~SDH~Pv~~ 247 (250)
T PRK13911 181 GFIDTFRYFY-PNKEKAYTWWSYMQQARDKNIGWRIDYFLCSNPLKTRLKDALI------------YKDILGSDHCPVGL 247 (250)
T ss_pred CCeehhhhhC-CCCCCCCccCCCcCCccccCCcceEEEEEEChHHhhhEEEEEE------------CCCCCCCCcccEEE
Confidence 5888887543 22234576665321 123346999999998421 2333221 12466899999999
Q ss_pred EE
Q psy12253 144 DL 145 (149)
Q Consensus 144 ~~ 145 (149)
++
T Consensus 248 ~~ 249 (250)
T PRK13911 248 EL 249 (250)
T ss_pred Ee
Confidence 86
No 15
>COG3021 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.70 E-value=0.00015 Score=58.12 Aligned_cols=102 Identities=20% Similarity=0.161 Sum_probs=57.9
Q ss_pred cCCCEEEEEeecCC-CCcH-----H----HHHHHHHhc-----------CCCchhHHHHHhCCCCCchhhhhhhhcCCCC
Q psy12253 24 KTQEEICIATTHLK-ARNG-----A----LLSTLRNEQ-----------EPTEPIYNTVMNHETLGLTSAYRHRTANNQE 82 (149)
Q Consensus 24 ~tg~~~~v~NTHLd-~~~~-----~----ll~~i~~~~-----------~P~s~~y~~l~~~~~~~l~say~~~~~~~~~ 82 (149)
..|+.+.|+|.|.+ +-.. + |.+.|.... .|=|..++.|.... ...+... .| .
T Consensus 185 ~~g~~l~v~~lh~~~~~~~~~~~~~ql~~l~~~i~~~~gpvIlaGDfNa~pWS~~~~R~~~l~---~~~~~~~---aG-~ 257 (309)
T COG3021 185 PDGTELTVVALHAVNFPVGTDPQRAQLLELGDQIAGHSGPVILAGDFNAPPWSRTAKRMAALG---GLRAAPR---AG-L 257 (309)
T ss_pred CCCCEEEEEeeccccccCCccHHHHHHHHHHHHHHcCCCCeEEeecCCCcchhHHHHHHHHhc---ccccchh---cc-C
Confidence 46899999999998 4321 1 333343321 56677777776531 1222221 12 2
Q ss_pred CceeeeeeccCC-CeeeeeeEEEeeCCcceEEEeeeCCCccccCCCCCCCCCCCCCceeeEEEEEEc
Q psy12253 83 PQYTTWKIREEG-EVCHTIDYVFYSQDKFDVEAVLDMPSGEQIGRDRIPSLRYPSDHFSLVCDLTLK 148 (149)
Q Consensus 83 p~fT~~~~~~~~-~~~~~IDYIf~~~~~~~v~~~~~~~~~~~i~~~~lp~~~~PSDH~pv~a~~~~~ 148 (149)
.++.++.. ... -+.-.||||||++ +++.+.. .+++ -.|||+||+++|++.
T Consensus 258 ~~~~~~p~-~~~r~~g~PIDhvf~rg--l~~~ka~-----------rl~~--~gSDH~PLLveF~~~ 308 (309)
T COG3021 258 WEVRFTPD-ERRRAFGLPIDHVFYRG--LTVMKAR-----------RLPD--RGSDHRPLLVEFSYG 308 (309)
T ss_pred CccccCHH-HHhhccCCCcceeeecC--cchhhhh-----------hccc--cCCCCCceEEEEEec
Confidence 22322221 001 2345699999987 4554421 2333 789999999999874
No 16
>COG0708 XthA Exonuclease III [DNA replication, recombination, and repair]
Probab=97.56 E-value=4.5e-05 Score=59.96 Aligned_cols=70 Identities=23% Similarity=0.375 Sum_probs=41.1
Q ss_pred CCchhhhhhhhcCCCCCceeeeeecc---CCCeeeeeeEEEeeCCcc--eEEEeeeCCCccccCCCCCCCCCCCCCceee
Q psy12253 67 LGLTSAYRHRTANNQEPQYTTWKIRE---EGEVCHTIDYVFYSQDKF--DVEAVLDMPSGEQIGRDRIPSLRYPSDHFSL 141 (149)
Q Consensus 67 ~~l~say~~~~~~~~~p~fT~~~~~~---~~~~~~~IDYIf~~~~~~--~v~~~~~~~~~~~i~~~~lp~~~~PSDH~pv 141 (149)
.++.|++..+.... ..||-|..+. .....-+||||++|+. + ++.+.....+ .-...-||||-||
T Consensus 187 ~G~~D~~R~~~p~~--~~YTwW~YR~~~~~~n~G~RID~~l~S~~-L~~~~~~a~I~~~--------~rg~e~pSDHaPV 255 (261)
T COG0708 187 AGFVDTFRLFHPEP--EKYTWWDYRANAARRNRGWRIDYILVSPA-LADRLKDAGIDRE--------VRGWEKPSDHAPV 255 (261)
T ss_pred cchhhhhHhhCCCC--CcccccccccchhhhcCceeEEEEEeCHH-HHHHHHhcCccHH--------HhcCCCCCCcCcE
Confidence 35889998653322 2277676532 1123468999999984 3 2222211110 0123679999999
Q ss_pred EEEEEE
Q psy12253 142 VCDLTL 147 (149)
Q Consensus 142 ~a~~~~ 147 (149)
.++|.+
T Consensus 256 ~~e~~~ 261 (261)
T COG0708 256 WVELDL 261 (261)
T ss_pred EEEecC
Confidence 999864
No 17
>KOG2756|consensus
Probab=97.25 E-value=0.00054 Score=54.17 Aligned_cols=123 Identities=20% Similarity=0.345 Sum_probs=61.5
Q ss_pred EEeeccCCCEEEEEeecCC----CCcHH------HHHHHHHhc--CCCchhH---------HHHHhCC-CCCchhhhhhh
Q psy12253 19 VLRNKKTQEEICIATTHLK----ARNGA------LLSTLRNEQ--EPTEPIY---------NTVMNHE-TLGLTSAYRHR 76 (149)
Q Consensus 19 ~l~~~~tg~~~~v~NTHLd----~~~~~------ll~~i~~~~--~P~s~~y---------~~l~~~~-~~~l~say~~~ 76 (149)
+++-.-.|..++++||||. |.|+. -++++++.. -|+--++ +....++ |-+..|+|..
T Consensus 196 I~Ev~v~G~Kl~l~tsHLEStr~h~P~r~~qF~~~~~k~~EaIe~lPnA~ViFGGD~NlrD~ev~r~~lPD~~vDvWE~- 274 (349)
T KOG2756|consen 196 IVEVNVSGNKLCLMTSHLESTRGHAPERMNQFKMVLKKMQEAIESLPNATVIFGGDTNLRDREVTRCGLPDNIVDVWEF- 274 (349)
T ss_pred EEEEeecCceEEEEeccccCCCCCChHHHHHHHHHHHHHHHHHHhCCCceEEEcCcccchhhhcccCCCCchHHHHHHH-
Confidence 4555567899999999996 44432 345554421 4544322 1112211 3346788873
Q ss_pred hcCCCCCcee--eeeeccCCCe---eeeeeEEEeeCCcceEEEeeeCCCccccCC---CCCCCCCCCCCceeeEEEEE
Q psy12253 77 TANNQEPQYT--TWKIREEGEV---CHTIDYVFYSQDKFDVEAVLDMPSGEQIGR---DRIPSLRYPSDHFSLVCDLT 146 (149)
Q Consensus 77 ~~~~~~p~fT--~~~~~~~~~~---~~~IDYIf~~~~~~~v~~~~~~~~~~~i~~---~~lp~~~~PSDH~pv~a~~~ 146 (149)
.+..+.-.|| ++.....+++ +.++|=||..-. +-..-+..+.-.-++. .++ +.|||||+.|.|.|.
T Consensus 275 lg~p~~~~FTwDT~~N~nl~G~~a~k~RfDRi~~r~~--~~~G~~~~~~l~l~g~~kiRgc--~~fPSDHwgll~Tl~ 348 (349)
T KOG2756|consen 275 LGKPKHCQFTWDTQMNSNLGGTAACKLRFDRIFFRAA--AEEGHIIPRSLDLLGLEKLRGC--GRFPSDHWGLLCTLD 348 (349)
T ss_pred hCCCCcCceeeecccCcccchhHHHHHHHHHHhhhhh--hhcCCcCccccchhhhhhhccC--CCCCcccceeeeecc
Confidence 3222222342 2221111222 357999998431 1111111111111221 243 599999999999874
No 18
>smart00476 DNaseIc deoxyribonuclease I. Deoxyribonuclease I catalyzes the endonucleolytic cleavage of double-stranded DNA. The enzyme is secreted outside the cell and also involved in apoptosis in the nucleus.
Probab=95.46 E-value=0.015 Score=46.33 Aligned_cols=35 Identities=11% Similarity=0.131 Sum_probs=31.7
Q ss_pred hhcCCCccEEEEEEEeeccC-CCEEEEEeecCCCCc
Q psy12253 6 MKRGAPRQVAVLLVLRNKKT-QEEICIATTHLKARN 40 (149)
Q Consensus 6 ~w~~~~~rv~~~~~l~~~~t-g~~~~v~NTHLd~~~ 40 (149)
+|++.++|..+||.|+.+.+ ++.|.++|+|+++..
T Consensus 120 ~~~~~F~ReP~~~~F~~~~~~~~~F~li~~H~~p~~ 155 (276)
T smart00476 120 CGNDVFSREPFVVKFSSPSTAVKEFVIVPLHTTPEA 155 (276)
T ss_pred CccccccccceEEEEEeCCCCCccEEEEEecCChHH
Confidence 49999999999999999874 689999999999875
No 19
>PF03372 Exo_endo_phos: Endonuclease/Exonuclease/phosphatase family Subset of Pfam family Subset of Pfam family; InterPro: IPR005135 This domain is found in a large number of proteins including magnesium dependent endonucleases and phosphatases involved in intracellular signalling []. Proteins this domain is found in include: AP endonuclease proteins (4.2.99.18 from EC), DNase I proteins (3.1.21.1 from EC), Synaptojanin an inositol-1,4,5-trisphosphate phosphatase (3.1.3.56 from EC) and Sphingomyelinase (3.1.4.12 from EC).; PDB: 2J63_A 2JC4_A 3TEB_B 3MTC_A 3N9V_B 1ZWX_A 2F1N_A 1Y21_A 1NTF_A 2IMQ_X ....
Probab=95.27 E-value=0.069 Score=39.30 Aligned_cols=15 Identities=27% Similarity=0.468 Sum_probs=13.0
Q ss_pred CCEEEEEeecCCCCc
Q psy12253 26 QEEICIATTHLKARN 40 (149)
Q Consensus 26 g~~~~v~NTHLd~~~ 40 (149)
|+.|.|+|+|+.+..
T Consensus 119 ~~~i~v~~~H~~~~~ 133 (249)
T PF03372_consen 119 GKPITVVNVHLPSSN 133 (249)
T ss_dssp TEEEEEEEEETTSHH
T ss_pred ceEEEeeeccccccc
Confidence 788999999998764
No 20
>PF14529 Exo_endo_phos_2: Endonuclease-reverse transcriptase ; PDB: 2EI9_A 1WDU_B.
Probab=94.26 E-value=0.092 Score=35.21 Aligned_cols=34 Identities=26% Similarity=0.177 Sum_probs=18.1
Q ss_pred eeeeeEEEeeCCcceEEEeeeCCCccccCCCCCCCCCCCCCceeeE
Q psy12253 97 CHTIDYVFYSQDKFDVEAVLDMPSGEQIGRDRIPSLRYPSDHFSLV 142 (149)
Q Consensus 97 ~~~IDYIf~~~~~~~v~~~~~~~~~~~i~~~~lp~~~~PSDH~pv~ 142 (149)
..+||+||++... ....... .......|||.||.
T Consensus 86 ~s~iD~~~~s~~~-~~~~~~~-----------~~~~~~~SDH~~I~ 119 (119)
T PF14529_consen 86 GSRIDLILTSDNL-LSWCVWV-----------ISSDDSGSDHCPIT 119 (119)
T ss_dssp EE--EEEEEECCG-CCCEEEE-----------EETTSSSSSB--EE
T ss_pred CceEEEEEECChH-HhcCcEE-----------EeCCCCCCCccCCC
Confidence 6799999999853 2221110 12356779999985
No 21
>smart00128 IPPc Inositol polyphosphate phosphatase, catalytic domain homologues. Mg(2+)-dependent/Li(+)-sensitive enzymes.
Probab=92.22 E-value=1.5 Score=35.34 Aligned_cols=28 Identities=21% Similarity=0.380 Sum_probs=20.1
Q ss_pred CccEEEEEEEeeccCCCEEEEEeecCCCCc
Q psy12253 11 PRQVAVLLVLRNKKTQEEICIATTHLKARN 40 (149)
Q Consensus 11 ~~rv~~~~~l~~~~tg~~~~v~NTHLd~~~ 40 (149)
.|.=++.+.|+- .+..|+++|+||.+..
T Consensus 124 ~nKG~v~i~~~~--~~~~~~fv~~HL~a~~ 151 (310)
T smart00128 124 GNKGAVAVRFKL--SDTSFCFVNSHLAAGA 151 (310)
T ss_pred ecCceEEEEEEE--cCcEEEEEeecccccc
Confidence 355555555544 5789999999999765
No 22
>PLN03191 Type I inositol-1,4,5-trisphosphate 5-phosphatase 2; Provisional
Probab=88.99 E-value=6 Score=34.98 Aligned_cols=27 Identities=19% Similarity=0.352 Sum_probs=19.1
Q ss_pred CccEEEEEEEeeccCCCEEEEEeecCCCC
Q psy12253 11 PRQVAVLLVLRNKKTQEEICIATTHLKAR 39 (149)
Q Consensus 11 ~~rv~~~~~l~~~~tg~~~~v~NTHLd~~ 39 (149)
-|--++.+.|.- .+..||++|.||-+.
T Consensus 406 GNKGAVaIr~~l--~~Ts~cFVn~HLAAg 432 (621)
T PLN03191 406 GNKGSVSISMSL--FQSRLCFVCSHLTSG 432 (621)
T ss_pred ccceeEEEEEEE--cCcEEEEEEeccccc
Confidence 445556556653 367999999999864
No 23
>COG2374 Predicted extracellular nuclease [General function prediction only]
Probab=84.92 E-value=1.5 Score=39.45 Aligned_cols=29 Identities=10% Similarity=0.273 Sum_probs=22.9
Q ss_pred CccEEEEEEEeeccCCCEEEEEeecCCCC
Q psy12253 11 PRQVAVLLVLRNKKTQEEICIATTHLKAR 39 (149)
Q Consensus 11 ~~rv~~~~~l~~~~tg~~~~v~NTHLd~~ 39 (149)
.+|=-+...|+.+.++.+|.|+-=||..+
T Consensus 605 n~R~~laqtF~~~~~~ekfvvVvNHfkSK 633 (798)
T COG2374 605 NARPPLAQTFQDLSGGEKFVVVVNHFKSK 633 (798)
T ss_pred ccCcchhhhhhhccCCcEEEEEEeeeccc
Confidence 34555556788888899999999999765
No 24
>KOG0566|consensus
Probab=84.42 E-value=5 Score=37.16 Aligned_cols=29 Identities=21% Similarity=0.316 Sum_probs=20.0
Q ss_pred CCccEEEEEEEeeccCCCEEEEEeecCCCCc
Q psy12253 10 APRQVAVLLVLRNKKTQEEICIATTHLKARN 40 (149)
Q Consensus 10 ~~~rv~~~~~l~~~~tg~~~~v~NTHLd~~~ 40 (149)
+-|--|+..+|.- .+..||++|+||-+..
T Consensus 658 tgNKGAVAIrf~~--~~TsfCFv~SHlAAG~ 686 (1080)
T KOG0566|consen 658 TGNKGAVAIRFVY--HATSFCFVCSHLAAGQ 686 (1080)
T ss_pred cCCCceEEEEEEe--ccccEEEEeccccccc
Confidence 4555566555543 4578999999998754
No 25
>KOG1294|consensus
Probab=83.43 E-value=1.4 Score=36.05 Aligned_cols=67 Identities=21% Similarity=0.269 Sum_probs=40.9
Q ss_pred CchhhhhhhhcCCCCCceeeeeecc---CCCeeeeeeEEEeeCCcce-EEEeeeCCCccccCCCCCCCCCCCCCceeeEE
Q psy12253 68 GLTSAYRHRTANNQEPQYTTWKIRE---EGEVCHTIDYVFYSQDKFD-VEAVLDMPSGEQIGRDRIPSLRYPSDHFSLVC 143 (149)
Q Consensus 68 ~l~say~~~~~~~~~p~fT~~~~~~---~~~~~~~IDYIf~~~~~~~-v~~~~~~~~~~~i~~~~lp~~~~PSDH~pv~a 143 (149)
.+.|+|..+.. +....+|.|+... .++-..++||+.++..... +.+.+ -.+.++-+|||-|+.+
T Consensus 264 ~~iDt~r~~~~-~~~~~~t~Wk~~~~~r~~~~~~r~dy~~Vsk~~~n~~r~~~-----------Ic~r~~~gsdh~pi~~ 331 (335)
T KOG1294|consen 264 PLIDTYRELHK-DQKKAYTFWKYMPNGRQRGHGERCDYILVSKPGPNNGRRFY-----------ICSRPIHGSDHCPITL 331 (335)
T ss_pred cceeehhhhcC-CccccccchhhccccccCCCCCceeEEEecCcCCCCCceee-----------eecCccCCCCCCCeee
Confidence 37788875532 2233567776311 2345578999999885322 22221 1233489999999999
Q ss_pred EEE
Q psy12253 144 DLT 146 (149)
Q Consensus 144 ~~~ 146 (149)
.|-
T Consensus 332 ~~~ 334 (335)
T KOG1294|consen 332 EFF 334 (335)
T ss_pred eec
Confidence 875
No 26
>smart00476 DNaseIc deoxyribonuclease I. Deoxyribonuclease I catalyzes the endonucleolytic cleavage of double-stranded DNA. The enzyme is secreted outside the cell and also involved in apoptosis in the nucleus.
Probab=69.20 E-value=2.7 Score=33.45 Aligned_cols=12 Identities=33% Similarity=0.368 Sum_probs=9.3
Q ss_pred CCCCCceeeEEE
Q psy12253 133 RYPSDHFSLVCD 144 (149)
Q Consensus 133 ~~PSDH~pv~a~ 144 (149)
..-|||+||..+
T Consensus 263 ~~vSDH~pve~~ 274 (276)
T smart00476 263 LAISDHFPVEVT 274 (276)
T ss_pred HhccCcccEEEE
Confidence 568999999443
No 27
>PF04334 DUF478: Protein of unknown function (DUF478); InterPro: IPR007429 This family contains uncharacterised protein encoded on Trypanosomal kinetoplast minicircles.
Probab=63.01 E-value=14 Score=22.39 Aligned_cols=30 Identities=10% Similarity=0.009 Sum_probs=27.2
Q ss_pred CccEEEEEEEeeccCCCEEEEEeecCCCCc
Q psy12253 11 PRQVAVLLVLRNKKTQEEICIATTHLKARN 40 (149)
Q Consensus 11 ~~rv~~~~~l~~~~tg~~~~v~NTHLd~~~ 40 (149)
.|.|..|.+|+-+.|.+-+-|+-|.+.|.-
T Consensus 9 tnpvlfwgifevrgtskgvgviltrffwvf 38 (68)
T PF04334_consen 9 TNPVLFWGIFEVRGTSKGVGVILTRFFWVF 38 (68)
T ss_pred cCceEEEEEEEEeecccceEEEEEEeeeec
Confidence 688999999999999999999999999863
No 28
>COG5411 Phosphatidylinositol 5-phosphate phosphatase [Signal transduction mechanisms]
Probab=46.84 E-value=9.6 Score=32.42 Aligned_cols=36 Identities=22% Similarity=0.372 Sum_probs=23.8
Q ss_pred eEEEeeCCcceEEEeeeCCCccccCCCCCCCCCCCCCceeeEEEEEEc
Q psy12253 101 DYVFYSQDKFDVEAVLDMPSGEQIGRDRIPSLRYPSDHFSLVCDLTLK 148 (149)
Q Consensus 101 DYIf~~~~~~~v~~~~~~~~~~~i~~~~lp~~~~PSDH~pv~a~~~~~ 148 (149)
|=|+|.+..++...+- ..|+ ..-|||.||.|.|+.+
T Consensus 292 DRIl~~s~~~~p~sY~-----------sip~-l~~SDHrPV~a~~~~~ 327 (460)
T COG5411 292 DRILYKSEQLTPHSYS-----------SIPH-LMISDHRPVYATFRAK 327 (460)
T ss_pred hhhhhhcccccccccc-----------ccCc-eeecCCCeEEEEEecc
Confidence 7777766434443332 2343 7789999999999863
No 29
>KOG3846|consensus
Probab=40.43 E-value=5.4 Score=32.79 Aligned_cols=19 Identities=26% Similarity=0.632 Sum_probs=13.8
Q ss_pred CCCCCCCCCceeeEEEEEE
Q psy12253 129 IPSLRYPSDHFSLVCDLTL 147 (149)
Q Consensus 129 lp~~~~PSDH~pv~a~~~~ 147 (149)
+..+.||||||++-...++
T Consensus 160 lE~kaFPSDhYAiesQ~~l 178 (465)
T KOG3846|consen 160 LEKKAFPSDHYAIESQCKL 178 (465)
T ss_pred hccCCCCchHHHHHhhhhh
Confidence 4456899999988665544
No 30
>PF05220 MgpC: MgpC protein precursor; InterPro: IPR007885 This family contains several Mycoplasma MgpC-like proteins. MgpC encode antigenic proteins associated with attachment [].
Probab=39.02 E-value=43 Score=24.99 Aligned_cols=32 Identities=16% Similarity=0.023 Sum_probs=26.7
Q ss_pred CCCccEEEEEEEeeccCCCEEEEEeecCCCCc
Q psy12253 9 GAPRQVAVLLVLRNKKTQEEICIATTHLKARN 40 (149)
Q Consensus 9 ~~~~rv~~~~~l~~~~tg~~~~v~NTHLd~~~ 40 (149)
+.++-.-.|++=+...+|+.-..++|||+|-.
T Consensus 4 ~~vPSlwYWVV~e~~~S~~~TW~A~T~LnwGt 35 (224)
T PF05220_consen 4 NAVPSLWYWVVDERTTSGRATWWAHTELNWGT 35 (224)
T ss_pred ccCcceEEEEEecccCCCCcceeeecccccch
Confidence 34667778888787788999999999999975
No 31
>PTZ00312 inositol-1,4,5-triphosphate 5-phosphatase; Provisional
Probab=27.57 E-value=66 Score=26.31 Aligned_cols=17 Identities=12% Similarity=0.124 Sum_probs=14.2
Q ss_pred cCCCEEEEEeecCCCCc
Q psy12253 24 KTQEEICIATTHLKARN 40 (149)
Q Consensus 24 ~tg~~~~v~NTHLd~~~ 40 (149)
-.+..|.++|.||.|+.
T Consensus 77 i~~t~fdfVNiHLFHDa 93 (356)
T PTZ00312 77 LGTVVVNVLNVHLYNDD 93 (356)
T ss_pred ECCEEEEEEEeeccCCc
Confidence 35678999999999874
No 32
>PF09671 Spore_GerQ: Spore coat protein (Spore_GerQ); InterPro: IPR014099 Members of this protein family are the spore coat protein GerQ of endospore-forming Firmicutes (low GC Gram-positive bacteria). This protein is cross-linked by a spore coat-associated transglutaminase.
Probab=27.48 E-value=68 Score=20.72 Aligned_cols=21 Identities=14% Similarity=0.169 Sum_probs=18.3
Q ss_pred EEeeccCCCEEEEEeecCCCC
Q psy12253 19 VLRNKKTQEEICIATTHLKAR 39 (149)
Q Consensus 19 ~l~~~~tg~~~~v~NTHLd~~ 39 (149)
+++|-+||+++++....|||.
T Consensus 52 iisDp~tg~ryLllmvylDyv 72 (81)
T PF09671_consen 52 IISDPKTGKRYLLLMVYLDYV 72 (81)
T ss_pred EEeCCCCCcEEEEEEEeeeeE
Confidence 567888999999999999975
No 33
>PF14202 TnpW: Transposon-encoded protein TnpW
Probab=25.00 E-value=1.3e+02 Score=16.36 Aligned_cols=17 Identities=6% Similarity=0.182 Sum_probs=14.2
Q ss_pred CCCEEEEEeecCCCCcH
Q psy12253 25 TQEEICIATTHLKARNG 41 (149)
Q Consensus 25 tg~~~~v~NTHLd~~~~ 41 (149)
-|+..++++.||.-...
T Consensus 7 IG~Tty~V~~~F~~~s~ 23 (37)
T PF14202_consen 7 IGKTTYVVEVHFSETSK 23 (37)
T ss_pred ECCEEEEEEEEECCCcc
Confidence 58899999999997653
No 34
>PF11082 DUF2880: Protein of unknown function (DUF2880); InterPro: IPR021305 This bacterial family of proteins has no known function.
Probab=23.82 E-value=38 Score=21.42 Aligned_cols=15 Identities=27% Similarity=0.565 Sum_probs=12.0
Q ss_pred CCCCCceeeEEEEEE
Q psy12253 133 RYPSDHFSLVCDLTL 147 (149)
Q Consensus 133 ~~PSDH~pv~a~~~~ 147 (149)
..--|||+|+++++.
T Consensus 59 kvaeD~YSVVadvEY 73 (79)
T PF11082_consen 59 KVAEDAYSVVADVEY 73 (79)
T ss_pred hhhhhhhheeeeeee
Confidence 345699999999986
Done!