Query psy12253
Match_columns 149
No_of_seqs 143 out of 747
Neff 7.9
Searched_HMMs 29240
Date Fri Aug 16 22:40:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12253.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12253hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ngq_A CCR4-NOT transcription 100.0 9.9E-30 3.4E-34 208.6 11.5 135 5-148 154-382 (398)
2 4b8c_D Glucose-repressible alc 99.9 7E-23 2.4E-27 178.3 1.7 131 11-149 531-719 (727)
3 3g6s_A Putative endonuclease/e 99.8 1.6E-17 5.4E-22 127.1 13.7 131 5-147 108-260 (267)
4 3l1w_A Uncharacterized protein 99.7 8.6E-17 2.9E-21 122.1 12.4 129 6-148 103-252 (257)
5 3mpr_A Putative endonuclease/e 99.7 5.8E-16 2E-20 120.9 14.1 138 5-147 112-289 (298)
6 4gz1_A Tyrosyl-DNA phosphodies 99.5 6E-13 2.1E-17 99.4 11.4 114 24-147 111-254 (256)
7 4f1h_A Tyrosyl-DNA phosphodies 99.4 9.7E-13 3.3E-17 96.8 9.5 45 96-146 201-249 (250)
8 3teb_A Endonuclease/exonucleas 99.4 2.1E-12 7.1E-17 97.7 11.0 119 12-147 122-266 (266)
9 1zwx_A SMCL, sphingomyelinase- 99.4 8.6E-13 2.9E-17 102.1 8.7 131 7-148 125-301 (301)
10 4fva_A 5'-tyrosyl-DNA phosphod 99.4 4.8E-12 1.6E-16 94.6 11.3 44 96-146 211-255 (256)
11 4gew_A 5'-tyrosyl-DNA phosphod 99.4 5.1E-12 1.7E-16 101.9 11.1 121 10-146 209-361 (362)
12 2ddr_A Sphingomyelin phosphodi 99.3 1.3E-11 4.3E-16 95.5 8.0 133 6-148 124-306 (306)
13 1vyb_A ORF2 contains A reverse 99.0 6.8E-09 2.3E-13 76.8 10.9 101 25-146 105-238 (238)
14 1ako_A Exonuclease III; AP-end 98.9 3.4E-09 1.2E-13 79.9 8.3 122 11-146 87-267 (268)
15 2imq_X Salivary nitrophorin; f 98.9 1.5E-09 5.2E-14 84.7 6.0 120 11-148 113-281 (282)
16 3i41_A Beta-hemolysin; beta to 98.9 1E-09 3.6E-14 86.3 5.1 94 6-109 143-274 (317)
17 2jc4_A Exodeoxyribonuclease II 98.8 4.9E-09 1.7E-13 78.5 6.2 76 58-147 176-256 (256)
18 2jc5_A Exodeoxyribonuclease; h 98.8 1.6E-08 5.4E-13 75.9 8.6 66 68-148 187-257 (259)
19 2voa_A AF_EXO, XTHA, exodeoxyr 98.8 2.5E-08 8.4E-13 74.9 7.8 69 68-147 183-257 (257)
20 2j63_A AP-endonuclease; base e 98.7 3E-07 1E-11 76.5 12.8 66 68-147 396-466 (467)
21 1wdu_A TRAS1 ORF2P; four-layer 98.6 3E-07 1E-11 69.0 9.8 39 97-148 204-244 (245)
22 2o3h_A DNA-(apurinic or apyrim 98.5 3.6E-07 1.2E-11 69.8 9.1 38 97-147 246-285 (285)
23 2a40_B Deoxyribonuclease-1; WA 98.5 3.8E-08 1.3E-12 74.9 2.2 29 12-40 110-139 (260)
24 1hd7_A DNA-(apurinic or apyrim 98.4 1.2E-06 4.2E-11 68.5 9.8 38 97-147 279-318 (318)
25 3g91_A MTH0212, exodeoxyribonu 98.0 1.1E-05 3.9E-10 60.9 6.0 66 68-147 188-257 (265)
26 1i9z_A Synaptojanin, phosphati 97.7 0.00036 1.2E-08 55.9 10.7 34 101-148 283-316 (347)
27 2f1n_A CDT B, cytolethal diste 97.6 2.2E-05 7.5E-10 60.6 2.7 23 12-40 130-152 (262)
28 2ei9_A Non-LTR retrotransposon 97.2 0.00076 2.6E-08 50.9 6.6 46 84-147 174-219 (240)
29 2xsw_A 72 kDa inositol polypho 96.8 0.017 5.8E-07 46.3 11.5 37 100-148 282-321 (357)
30 3mtc_A Type II inositol-1,4,5- 96.4 0.077 2.6E-06 41.9 12.7 29 11-41 121-149 (313)
31 1sr4_B CDT B, cytolethal diste 96.0 0.0059 2E-07 47.1 4.0 37 98-143 213-257 (261)
32 4a9c_A Phosphatidylinositol-3, 94.0 1.1 3.9E-05 35.1 12.0 28 11-40 123-150 (316)
No 1
>3ngq_A CCR4-NOT transcription complex subunit 6-like; alpha/beta sandwich fold, hydrolase; HET: 1PS; 1.80A {Homo sapiens} PDB: 3ngo_A 3ngn_A
Probab=99.96 E-value=9.9e-30 Score=208.57 Aligned_cols=135 Identities=27% Similarity=0.400 Sum_probs=106.7
Q ss_pred ehhcCCCcc------EEEEEEEeecc-------------CCCEEEEEeecCCCCcH---H-------HHHHHHHh-----
Q psy12253 5 IMKRGAPRQ------VAVLLVLRNKK-------------TQEEICIATTHLKARNG---A-------LLSTLRNE----- 50 (149)
Q Consensus 5 ~~w~~~~~r------v~~~~~l~~~~-------------tg~~~~v~NTHLd~~~~---~-------ll~~i~~~----- 50 (149)
.+|++.++| |+++++|+++. +|+.|+|+||||+|++. . |+++|++.
T Consensus 154 ~~~~~~~~Ri~t~~nval~~~L~~~~~~~~~~~~~~~~~~~~~l~V~nTHL~~~p~~~~vRl~Q~~~Ll~~l~~~~~~~~ 233 (398)
T 3ngq_A 154 DGSEAMLNRVMTKDNIGVAVVLEVHKELFGAGMKPIHAADKQLLIVANAHMHWDPEYSDVKLIQTMMFVSEVKNILEKAS 233 (398)
T ss_dssp TTCHHHHHTTTTCCCEEEEEEEEECGGGC-----------CCEEEEEEEECCCCTTCHHHHHHHHHHHHHHHHHHHCC--
T ss_pred ccchhhhcceeeccceeEEEEEEEcccccccccccccCCCCcEEEEEEeCcCCCCCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 367776555 66778899875 57899999999999752 1 45555432
Q ss_pred ----------c------------CCCchhHHHHHhC-----------------------------------CCCCchhhh
Q psy12253 51 ----------Q------------EPTEPIYNTVMNH-----------------------------------ETLGLTSAY 73 (149)
Q Consensus 51 ----------~------------~P~s~~y~~l~~~-----------------------------------~~~~l~say 73 (149)
. +|+|++|++|+++ ++++|.|||
T Consensus 234 ~~~~~~~~~~~~~PvIl~GDFNs~P~s~vy~~L~~G~v~~~h~d~~~~~y~~~~~~~~~~~~~~~~~~~~~h~~~L~SAy 313 (398)
T 3ngq_A 234 SRPGSPTADPNSIPLVLCADLNSLPDSGVVEYLSNGGVADNHKDFKELRYNECLMNFSCNGKNGSSEGRITHGFQLKSAY 313 (398)
T ss_dssp -----------CCCEEEEEECSCCTTSHHHHHHHHTEEETTCGGGCC-----GGGGGCC-------CCEEECSCCEEETT
T ss_pred cccccccccCCCCceEEEeeCCCCCCCHHHHHHhcCCCCCCChhhhhcccccccccccccccccccccccccCccccccc
Confidence 1 8999999999843 135566777
Q ss_pred hhhhcCCCCCceeeeeeccCCCeeeeeeEEEeeCCcceEEEeeeCCCccccC--C-CCCCCCCCCCCceeeEEEEEEc
Q psy12253 74 RHRTANNQEPQYTTWKIREEGEVCHTIDYVFYSQDKFDVEAVLDMPSGEQIG--R-DRIPSLRYPSDHFSLVCDLTLK 148 (149)
Q Consensus 74 ~~~~~~~~~p~fT~~~~~~~~~~~~~IDYIf~~~~~~~v~~~~~~~~~~~i~--~-~~lp~~~~PSDH~pv~a~~~~~ 148 (149)
.. .+|+||||+ ++|.++||||||+++.++|.+++..++.+++. . .|+||..|||||+||+|+|+|+
T Consensus 314 ~~-----~~~~fTnyt----~~F~g~lDYI~~s~~~l~v~~vl~~~~~~~l~~~~~~glP~~~~PSDHi~l~a~f~~~ 382 (398)
T 3ngq_A 314 EN-----NLMPYTNYT----FDFKGVIDYIFYSKTHMNVEGVLGPLDPQWLVENNITGCPHPHIPSDHFSLLTQLELH 382 (398)
T ss_dssp TT-----TSSSCSEEC----SSCEECCEEEEEETTTEEEEEEECCCCHHHHHHTTCCSSCBTTBCSSBCCEEEEEEEC
T ss_pred cC-----CCCCceecc----CCcCCceeEEEEeCCceEEEeecCCCCHHHhccccccCCCCCCCCCcchheeEEEEEc
Confidence 62 389999999 89999999999999789999999877777664 2 5999999999999999999996
No 2
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.85 E-value=7e-23 Score=178.31 Aligned_cols=131 Identities=25% Similarity=0.412 Sum_probs=31.9
Q ss_pred CccEEEEEEEeeccCCCEEEEEeecCCCCcHH----------HHHHHHHh--------------c-----------CCCc
Q psy12253 11 PRQVAVLLVLRNKKTQEEICIATTHLKARNGA----------LLSTLRNE--------------Q-----------EPTE 55 (149)
Q Consensus 11 ~~rv~~~~~l~~~~tg~~~~v~NTHLd~~~~~----------ll~~i~~~--------------~-----------~P~s 55 (149)
..|+++++.|+++.+|+.|+|+||||+|.+.. |+++|++. . .|++
T Consensus 531 ~~~i~~~~~l~~~~~g~~l~V~ntHL~~~p~~~~~R~~Qa~~l~~~l~~~~~~~~~~~~~~~~~~~pvIl~GDFNs~P~s 610 (727)
T 4b8c_D 531 KDNVALFLKLQHIPSGDTIWAVTTHLHWDPKFNDVKTFQVGVLLDHLETLLKEETSHNFRQDIKKFPVLICGDFNSYINS 610 (727)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcEEEEEEEeecCCCceEEEEEeccccCCCCCchHHHHHHHHHHHHHHHHHHhcccccccccCCCceEEecccCCCCCC
Confidence 45799999999999999999999999998521 33444321 0 7999
Q ss_pred hhHHHHHhCC----------------------CCCchhhhhhhhcCCCCCceeeeeeccCCCeeeeeeEEEeeCCcceEE
Q psy12253 56 PIYNTVMNHE----------------------TLGLTSAYRHRTANNQEPQYTTWKIREEGEVCHTIDYVFYSQDKFDVE 113 (149)
Q Consensus 56 ~~y~~l~~~~----------------------~~~l~say~~~~~~~~~p~fT~~~~~~~~~~~~~IDYIf~~~~~~~v~ 113 (149)
++|+.|+.+. ++.+.++|.. .++++||+|+ +++.++||||||+++.+.+.
T Consensus 611 ~~~~~l~~~~v~~~~d~~~~~~~~~~~~~~~~~~~l~say~~----~~~~~~T~~~----~~~~~~LDyI~~S~~~l~~~ 682 (727)
T 4b8c_D 611 AVYELINTGRVQIHQEGNGRDFGYMSEKNFSHNLALKSSYNC----IGELPFTNFT----PSFTDVIDYIWFSTHALRVR 682 (727)
T ss_dssp -------------------------------------------------CCCSBCC----SSCCBCC-------------
T ss_pred cceEeeecCCcCcchhhccccccccccccccccccccchhhc----CCCCcccccc----CccCCeeeeEEEcCCceeEe
Confidence 9999986531 1345666652 2478999998 78889999999998778888
Q ss_pred EeeeCCCccccCC-CCCCCCCCCCCceeeEEEEEEcC
Q psy12253 114 AVLDMPSGEQIGR-DRIPSLRYPSDHFSLVCDLTLKK 149 (149)
Q Consensus 114 ~~~~~~~~~~i~~-~~lp~~~~PSDH~pv~a~~~~~k 149 (149)
+++..+..+.+.. .++|+..|||||+||+|+|++++
T Consensus 683 ~~~~~~~~~~~~~~~~~P~~~~pSDH~pV~a~f~l~~ 719 (727)
T 4b8c_D 683 GLLGEVDPEYVSKFIGFPNDKFPSDHIPLLARFEFMK 719 (727)
T ss_dssp ----CCCHHHHTTCSSSSBTTBCSSBCC---------
T ss_pred eccCCCCHHHhcccCCCCCCCCCCCceeEEEEEEEec
Confidence 8887777766665 48999999999999999999863
No 3
>3g6s_A Putative endonuclease/exonuclease/phosphatase family protein; alpha-beta protein, structural genomics, PSI-2; 2.50A {Bacteroides vulgatus atcc 8482}
Probab=99.75 E-value=1.6e-17 Score=127.06 Aligned_cols=131 Identities=18% Similarity=0.279 Sum_probs=93.3
Q ss_pred ehhcCCCccEEEEEEEeeccCCCEEEEEeecCCCCcHH--------HHHHHHHhc-------------CCCchhHHHHHh
Q psy12253 5 IMKRGAPRQVAVLLVLRNKKTQEEICIATTHLKARNGA--------LLSTLRNEQ-------------EPTEPIYNTVMN 63 (149)
Q Consensus 5 ~~w~~~~~rv~~~~~l~~~~tg~~~~v~NTHLd~~~~~--------ll~~i~~~~-------------~P~s~~y~~l~~ 63 (149)
.+|++..+|+++++.|+.+.+|+.|.|+||||++.... |++.+++.. .|++++|+.|.+
T Consensus 108 ~~~~~~~~R~~~~~~~~~~~~~~~~~v~~~Hl~~~~~~~R~~q~~~l~~~l~~~~~~~pvIl~GDfN~~~~~~~~~~l~~ 187 (267)
T 3g6s_A 108 MGWDAVCVRIATWAKFKDKATGKIFMAVNTHFDHVGEEARRQSALLIIRKIKEIVGERPAVVTGDFNVTDASDAYETITT 187 (267)
T ss_dssp CCTTCSSCCEEEEEEEEETTTCCEEEEEEEECCSSCHHHHHHHHHHHHHHHHHHTTTSCEEEEEECSSCTTSHHHHHHHS
T ss_pred ccccccCcceEEEEEEEEcCCCCEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEeECCCCCCCHHHHHhhc
Confidence 46888999999999999988899999999999987521 455555431 799999999987
Q ss_pred CCCCCchhhhhhhh-cCCCCCceeeeeeccCCCeeeeeeEEEeeCCcceEEEeeeCCCccccCCCCCCCCCCCCCceeeE
Q psy12253 64 HETLGLTSAYRHRT-ANNQEPQYTTWKIREEGEVCHTIDYVFYSQDKFDVEAVLDMPSGEQIGRDRIPSLRYPSDHFSLV 142 (149)
Q Consensus 64 ~~~~~l~say~~~~-~~~~~p~fT~~~~~~~~~~~~~IDYIf~~~~~~~v~~~~~~~~~~~i~~~~lp~~~~PSDH~pv~ 142 (149)
.+ ..|.|++.... ..+..+||+.|... ......+|||||++++ +++.++..+... .++ ++|||+||+
T Consensus 188 ~~-~~l~d~~~~~~~~~~~~~T~~~~~~~-~~~~~~riD~I~~s~~-~~~~~~~v~~~~--------~~~-~~SDH~PV~ 255 (267)
T 3g6s_A 188 NE-FVMKDAYKTAARVTGVDYTFHDFARI-PAEDCEKIDFIFVTPQ-VLVKSCEIPAEV--------PEA-LLSDHNPQL 255 (267)
T ss_dssp SS-SCCEEHHHHCSEEEECSCSBCTTTTS-CGGGCCCCEEEEECTT-SEEEEEEECCCC--------SSS-CCCSBCCEE
T ss_pred CC-cchhhhHhhhccccCCCCCEeCCCCC-CCCCCCcEeEEEeCCC-ceEEEEEEecCC--------CCC-CCCCcccEE
Confidence 41 13889987432 11234566655410 0123468999999985 788776443321 135 899999999
Q ss_pred EEEEE
Q psy12253 143 CDLTL 147 (149)
Q Consensus 143 a~~~~ 147 (149)
|+++.
T Consensus 256 a~~~~ 260 (267)
T 3g6s_A 256 ADLEL 260 (267)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99986
No 4
>3l1w_A Uncharacterized protein; APC29019.2, conserved protein, enterococcus faecalis V583, PSI-2, MCSG, structural genomics; 1.60A {Enterococcus faecalis}
Probab=99.71 E-value=8.6e-17 Score=122.15 Aligned_cols=129 Identities=16% Similarity=0.278 Sum_probs=90.5
Q ss_pred hhcCCCccEEEEEEEeeccCCCEEEEEeecCCCCcHH--------HHHHHHH-hc------------CCCchhHHHHHhC
Q psy12253 6 MKRGAPRQVAVLLVLRNKKTQEEICIATTHLKARNGA--------LLSTLRN-EQ------------EPTEPIYNTVMNH 64 (149)
Q Consensus 6 ~w~~~~~rv~~~~~l~~~~tg~~~~v~NTHLd~~~~~--------ll~~i~~-~~------------~P~s~~y~~l~~~ 64 (149)
+|++..+|+++++.|+...+|+.|.|+||||++.... |++.+++ .. .|++++|+.|.+
T Consensus 103 ~~~~~~~r~~~~~~~~~~~~g~~~~v~~~Hl~~~~~~~r~~q~~~l~~~i~~~~~~~pvil~GDfN~~~~~~~~~~l~~- 181 (257)
T 3l1w_A 103 HPEAGCPRIALWGLFKETTQNTPFLVINVHLDHISAHARLAGMTVILEELHDKIAQYPTLLMGDFNAESGEEVHQLVQK- 181 (257)
T ss_dssp CTTCSSCCEEEEEEEEETTCSSCEEEEEEECCSSCHHHHHHHHHHHHHHTHHHHHHSCEEEEEECCCCTTSHHHHHHTT-
T ss_pred cccccccceeEEEEEEEcCCCCEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHcCCCCEEEEeeCCCCCCcHHHHHhhh-
Confidence 4667889999999999987899999999999987521 4555542 11 789999998876
Q ss_pred CCCCchhhhhhhhcCCCCCceeeeeeccCCCeeeeeeEEEeeCCcceEEEeeeCCCccccCCCCCCCCCCCCCceeeEEE
Q psy12253 65 ETLGLTSAYRHRTANNQEPQYTTWKIREEGEVCHTIDYVFYSQDKFDVEAVLDMPSGEQIGRDRIPSLRYPSDHFSLVCD 144 (149)
Q Consensus 65 ~~~~l~say~~~~~~~~~p~fT~~~~~~~~~~~~~IDYIf~~~~~~~v~~~~~~~~~~~i~~~~lp~~~~PSDH~pv~a~ 144 (149)
.+.+++......+...+|++|....+.....+|||||+ + .+++.++..+.. .+.+.++|||+||+|+
T Consensus 182 ---~l~d~~~~~~~~~~~~t~~~~~~~~~~~~~~riD~i~~-~-~~~~~~~~v~~~--------~~~~~~~SDH~pv~~~ 248 (257)
T 3l1w_A 182 ---KFQDSKNLATHYGPRGTFQNFTYTKPWAELEEIDYIYV-K-GWQVQQTASLTD--------SIDGRFPSDHFPLEAE 248 (257)
T ss_dssp ---TCEEGGGTSEEESCSCCBCTTCTTCCGGGCBCCEEEEE-E-SEEEEEEEECCC--------CBTTBCSSSBCCEEEE
T ss_pred ---hccchhhhhcccCCCCcccCCcccCCCCCCCceeEEEE-C-CcEEEEEEEecc--------CcCCcccCCcceEEEE
Confidence 37888864322234556655531000112268999999 5 478877644332 1346799999999999
Q ss_pred EEEc
Q psy12253 145 LTLK 148 (149)
Q Consensus 145 ~~~~ 148 (149)
|+++
T Consensus 249 l~~~ 252 (257)
T 3l1w_A 249 VAGE 252 (257)
T ss_dssp EEEC
T ss_pred EEEE
Confidence 9986
No 5
>3mpr_A Putative endonuclease/exonuclease/phosphatase FAM protein; structural genomics, PSI-2, protein structure initiative; HET: MSE PEG; 1.90A {Bacteroides thetaiotaomicron}
Probab=99.69 E-value=5.8e-16 Score=120.87 Aligned_cols=138 Identities=16% Similarity=0.188 Sum_probs=93.4
Q ss_pred ehhcCCCccEEEEEEEeeccCCCEEEEEeecCCCCcHH--------HHHHHHHh----c-----------CCCchhHHHH
Q psy12253 5 IMKRGAPRQVAVLLVLRNKKTQEEICIATTHLKARNGA--------LLSTLRNE----Q-----------EPTEPIYNTV 61 (149)
Q Consensus 5 ~~w~~~~~rv~~~~~l~~~~tg~~~~v~NTHLd~~~~~--------ll~~i~~~----~-----------~P~s~~y~~l 61 (149)
.+|++..+|+++++.|+.+.+|+.|.|+||||++.... |++.+++. . .|++.+|+.|
T Consensus 112 ~~~~~~~~R~~~~~~~~~~~~g~~~~v~~~Hl~~~~~~~R~~q~~~l~~~i~~~~~~~~~pvIl~GDfN~~~~~~~~~~l 191 (298)
T 3mpr_A 112 KGWDAVLPRICSWGHFKCKDTGFEFLFFNLHMDHIGKKARVESAFLVQEKMKELGRGKNLPAILTGDFNVDQTHQSYDAF 191 (298)
T ss_dssp CCTTCSSCCEEEEEEEEETTTCCEEEEEEEECCSSCHHHHHHHHHHHHHHHHHTTTTSCCCEEEEEECSSCTTSHHHHHH
T ss_pred cccccccCceeEEEEEEEcCCCCEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCHHHHHH
Confidence 46888999999999999988999999999999976521 45555542 1 7899999999
Q ss_pred HhCCCCCchhhhhhhhc-CCCCCceeeeeeccCCCeeeeeeEEEeeCCcceEEEeeeCCCcccc--------CCCCCCCC
Q psy12253 62 MNHETLGLTSAYRHRTA-NNQEPQYTTWKIREEGEVCHTIDYVFYSQDKFDVEAVLDMPSGEQI--------GRDRIPSL 132 (149)
Q Consensus 62 ~~~~~~~l~say~~~~~-~~~~p~fT~~~~~~~~~~~~~IDYIf~~~~~~~v~~~~~~~~~~~i--------~~~~lp~~ 132 (149)
.+. ..|.|++..... .+.++||++|... .....+|||||++++ +++.++..+.....- .....|..
T Consensus 192 ~~~--g~l~D~~~~~~~~~~~~~T~~~~~~~--~~~~~rID~Il~s~~-~~v~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 266 (298)
T 3mpr_A 192 VSK--GVLCDSYEKCDYRYALNGTFNNFDPN--SFTESRIDHIFVSPS-FHVKRYGVLTDTYRSVRENSKKEDVRDCPEE 266 (298)
T ss_dssp HTT--SSSEEHHHHCSEEECSSCSBCTTCTT--CCCSCCCEEEEECTT-SEEEEEEECCCCEEEECC-------------
T ss_pred hcC--CcchhhHhhhcccCCCCCCccCCCCC--CCCCceEEEEEeCCC-eeEEEEEEecCccccCCCcccccCcccchhh
Confidence 875 248898874321 1335677666411 124578999999984 788877655432110 00112211
Q ss_pred --------CCCCCceeeEEEEEE
Q psy12253 133 --------RYPSDHFSLVCDLTL 147 (149)
Q Consensus 133 --------~~PSDH~pv~a~~~~ 147 (149)
..+|||+||++++..
T Consensus 267 ~~~~~~~~~~~SDH~PV~v~~~~ 289 (298)
T 3mpr_A 267 ITIKAYEARTPSDHFPVKVELVF 289 (298)
T ss_dssp ---CCEEEECSSSBCCEEEEEEE
T ss_pred hccChhhcccCCCCCcEEEEEec
Confidence 267999999999875
No 6
>4gz1_A Tyrosyl-DNA phosphodiesterase 2; protein-DNA complex, DNA repair, 5'-DNA END processing, endonuclease/exonuclease/phosphatase domain; HET: DNA EPE; 1.50A {Mus musculus} PDB: 4gyz_A* 4gz0_A* 4gz2_A*
Probab=99.46 E-value=6e-13 Score=99.35 Aligned_cols=114 Identities=23% Similarity=0.405 Sum_probs=62.3
Q ss_pred cCCCEEEEEeecCCCCcHH----------HHHHHHHhc-------------CCCchhHHHHHhCCCCCchhhhhhhhcCC
Q psy12253 24 KTQEEICIATTHLKARNGA----------LLSTLRNEQ-------------EPTEPIYNTVMNHETLGLTSAYRHRTANN 80 (149)
Q Consensus 24 ~tg~~~~v~NTHLd~~~~~----------ll~~i~~~~-------------~P~s~~y~~l~~~~~~~l~say~~~~~~~ 80 (149)
..|+.|.|+||||++.+.. +++.+++.. .|++..+..+.. ..+.+++.... ..
T Consensus 111 ~~~~~~~v~~~Hl~~~~~~~~~~~~q~~~~~~~l~~~~~~~pvIl~GDfN~~~~~~~~~~~~~---~~~~~~~~~~~-~~ 186 (256)
T 4gz1_A 111 LGGNEFCLMTSHLESTREHSAERIRQLKTVLGKMQEAPDSTTVIFAGDTNLRDQEVIKCGGLP---DNVFDAWEFLG-KP 186 (256)
T ss_dssp ETTEEEEEEECBCCCSGGGHHHHHHHHHHHHHHHHHSCTTSEEEEEEECCCCHHHHHHHTCSC---TTEEEHHHHTT-CC
T ss_pred eCCEEEEEEeecccccccchhhhhHHHHHHhhhhhhccCcceEEEeCccCCCcchhhhhhhcc---chhhhHHHHhc-CC
Confidence 4689999999999986521 344444321 333333332222 23556665321 11
Q ss_pred CCCcee--eeee---ccCCCeeeeeeEEEeeCCc--ceEEEeeeCCCccccCCCCCCCCCCCCCceeeEEEEEE
Q psy12253 81 QEPQYT--TWKI---REEGEVCHTIDYVFYSQDK--FDVEAVLDMPSGEQIGRDRIPSLRYPSDHFSLVCDLTL 147 (149)
Q Consensus 81 ~~p~fT--~~~~---~~~~~~~~~IDYIf~~~~~--~~v~~~~~~~~~~~i~~~~lp~~~~PSDH~pv~a~~~~ 147 (149)
.++.++ .+.. ........+|||||+++.. +.+.++- .+....++++.|||||+||+|+|++
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~riD~I~~~~~~~~~~~~~~~------~~~~~~~~~~~~~SDH~pv~a~~~i 254 (256)
T 4gz1_A 187 KHCQYTWDTKANNNLRIPAAYKHRFDRIFFRAEEGHLIPQSLD------LVGLEKLDCGRFPSDHWGLLCTLNV 254 (256)
T ss_dssp GGGSCSEETTTCCTTCCSSCCEECCEEEEEECC-CSEEEEEEE------EECCSCCTTSSCSCSBCEEEEEEEE
T ss_pred CCCCcccccCCCCccccCCCCCccEEEEEEECCccceeeeEEE------EEeccccCCCCCCCccccEEEEEEE
Confidence 122221 1110 0013345689999998753 3333321 1222356778999999999999987
No 7
>4f1h_A Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA complex; HET: DNA; 1.66A {Danio rerio} PDB: 4fpv_A* 4f1h_B*
Probab=99.41 E-value=9.7e-13 Score=96.84 Aligned_cols=45 Identities=24% Similarity=0.517 Sum_probs=30.6
Q ss_pred eeeeeeEEEeeCCc----ceEEEeeeCCCccccCCCCCCCCCCCCCceeeEEEEE
Q psy12253 96 VCHTIDYVFYSQDK----FDVEAVLDMPSGEQIGRDRIPSLRYPSDHFSLVCDLT 146 (149)
Q Consensus 96 ~~~~IDYIf~~~~~----~~v~~~~~~~~~~~i~~~~lp~~~~PSDH~pv~a~~~ 146 (149)
...+|||||+++.. +.+... ..+....++++.|||||+||+|+|+
T Consensus 201 ~~~riD~I~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~SDH~pv~a~f~ 249 (250)
T 4f1h_A 201 SRCRFDRIFLRSAKTAPPVTPDHM------ALIGMEKLDCGRYTSDHWGIYCTFN 249 (250)
T ss_dssp CEECCEEEEEECCTTSCCCEEEEE------EEECCSCCTTSSCSCSBCEEEEEEE
T ss_pred CCccEEEEEEeCcccccceeeeEE------EEecccccCCCCCCCcccCEEEEEe
Confidence 34689999998742 222222 1112235678899999999999986
No 8
>3teb_A Endonuclease/exonuclease/phosphatase; PSI-biology, MCSG, midwest center for structural genomics; 2.99A {Leptotrichia buccalis c-1013-b}
Probab=99.40 E-value=2.1e-12 Score=97.71 Aligned_cols=119 Identities=16% Similarity=0.344 Sum_probs=75.2
Q ss_pred ccEEEEEEEeeccCCCEEEEEeecCCCCc--H---H-----HHHHHHHhc----------CC--CchhHHHHHhCCCCCc
Q psy12253 12 RQVAVLLVLRNKKTQEEICIATTHLKARN--G---A-----LLSTLRNEQ----------EP--TEPIYNTVMNHETLGL 69 (149)
Q Consensus 12 ~rv~~~~~l~~~~tg~~~~v~NTHLd~~~--~---~-----ll~~i~~~~----------~P--~s~~y~~l~~~~~~~l 69 (149)
.|.++++.++. .|+.|.|+||||++.. . . |++.+++.. .| +++.|+.|.+. ++
T Consensus 122 ~r~~~~~~~~~--~~~~~~v~~~Hl~~~~~~~~~r~~q~~~l~~~~~~~~~~il~GDfN~~~~~~~~~~~~l~~~---~l 196 (266)
T 3teb_A 122 ARRIVSITINY--EGQDIEFYSCHMNLPNCETEDMGKNIQTILNRTQNSNLKILMGDFNTDAIGNVAAYENILSQ---GL 196 (266)
T ss_dssp CCEEEEEEEEE--TTEEEEEEEEECCCTTCTTCCHHHHHHHHHTSSCSCCEEEEEEECCCCTTTCHHHHHHHHTT---TC
T ss_pred cceEEEEEEEe--CCeEEEEEEecCCCccCChHHHHHHHHHHHHHHhcCCcEEEEeECCCCCCCCCcHHHhhccc---cc
Confidence 47777777764 5899999999999863 1 1 222222111 67 89999998874 48
Q ss_pred hhhhhhhhcCCCCCce----eeeeeccCCCeeeeeeEEEeeCCcceEEEeeeCCCccccCCCCCCCCCCCCCceeeEEEE
Q psy12253 70 TSAYRHRTANNQEPQY----TTWKIREEGEVCHTIDYVFYSQDKFDVEAVLDMPSGEQIGRDRIPSLRYPSDHFSLVCDL 145 (149)
Q Consensus 70 ~say~~~~~~~~~p~f----T~~~~~~~~~~~~~IDYIf~~~~~~~v~~~~~~~~~~~i~~~~lp~~~~PSDH~pv~a~~ 145 (149)
.+++........+++| ++|. ......+|||||+++ .+++.+...+.. ...+.++|||+||+|+|
T Consensus 197 ~d~~~~~~~~~~~~t~~~~~~~~~---~~~~~~riD~i~~s~-~~~~~~~~v~~~--------~~~~~~~SDH~Pv~~~l 264 (266)
T 3teb_A 197 FDTYVMAEKKDDGITVDKSIHGWD---NDKAKKRLDYIFSNK-ELKVKESKVIFN--------NKNKEIVSDHFGIEVKI 264 (266)
T ss_dssp EEHHHHCSEECCCCCEECC---------CTTEECCEEEEESS-CCCEEEEEEESS--------SSSSCCCSSSCEEEEEE
T ss_pred cchHHhhccccCCccccCccCCcC---cCCcCCeeEEEEeCC-CeEEEEEEEEeC--------CCCCCCcCCccCEEEEE
Confidence 8988743222223333 2332 022346899999998 467776543322 12357899999999999
Q ss_pred EE
Q psy12253 146 TL 147 (149)
Q Consensus 146 ~~ 147 (149)
+|
T Consensus 265 ~l 266 (266)
T 3teb_A 265 EF 266 (266)
T ss_dssp CC
T ss_pred EC
Confidence 75
No 9
>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase; 1.90A {Listeria ivanovii} SCOP: d.151.1.3
Probab=99.40 E-value=8.6e-13 Score=102.09 Aligned_cols=131 Identities=13% Similarity=0.139 Sum_probs=74.5
Q ss_pred hcCCCccEEEEEEEeeccCCCEEEEEeecCCCCc-------HH---------HHHHHHHh-----c----------CCCc
Q psy12253 7 KRGAPRQVAVLLVLRNKKTQEEICIATTHLKARN-------GA---------LLSTLRNE-----Q----------EPTE 55 (149)
Q Consensus 7 w~~~~~rv~~~~~l~~~~tg~~~~v~NTHLd~~~-------~~---------ll~~i~~~-----~----------~P~s 55 (149)
|+...+|.++++.++. .|+.|.|+||||++.. .. |.+.+++. . .|++
T Consensus 125 ~~~~~~r~~~~~~~~~--~g~~~~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~~~~~~~~pvIl~GDfN~~~~~ 202 (301)
T 1zwx_A 125 ADRLSNKGFAYVKIMK--NGKPYHIIGTHTQADDSLISKDTSRAIRAEQMQEIQTFIAKKNIPKDEIIFIGGDLNVNYGT 202 (301)
T ss_dssp GGGGBCCEEEEEEEEE--TTEEEEEEEEECCCCCTTSCHHHHHHHHHHHHHHHHHHHHHHTCCTTSEEEEEEECCCCTTS
T ss_pred cccccCCCeEEEEEEE--CCEEEEEEEecCCCCCCCCCccccHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeeCCCCCCc
Confidence 5555678899988875 5899999999998751 11 44555542 1 7889
Q ss_pred hhHHHHHhCCCCCch--hhhhhhhcCCCCCceee-------eeeccCCCeeeeeeEEEeeCCcceE----EEeeeCCCc-
Q psy12253 56 PIYNTVMNHETLGLT--SAYRHRTANNQEPQYTT-------WKIREEGEVCHTIDYVFYSQDKFDV----EAVLDMPSG- 121 (149)
Q Consensus 56 ~~y~~l~~~~~~~l~--say~~~~~~~~~p~fT~-------~~~~~~~~~~~~IDYIf~~~~~~~v----~~~~~~~~~- 121 (149)
..|+.|... +.+. ++|. +...||.. ++.. .....+|||||+++..... .++......
T Consensus 203 ~~~~~l~~~--~~~~~~d~~~-----g~~~T~~~~~n~~~~~t~~--~~~~~rID~I~~~~~~~~~~~~~~~~~~~~~~~ 273 (301)
T 1zwx_A 203 DEYHDMLKL--LNVSSPANFN-----GQMATWDPTTNSMLKESYP--KAAPEYLDYIFVENGHARPHSWHNKVLHTKSPQ 273 (301)
T ss_dssp HHHHHHHHH--HTBCCCTTCC-----TTSCSBCTTTCHHHHHHCT--TSCCBCCEEEEEBTTSCCCSCEEEEECCCCCCC
T ss_pred HHHHHHHHH--cCCCCCcccc-----CCCceECCccCccccccCC--CCCcceEeEEEEeCCCCCcccccceeecccccc
Confidence 999888763 2343 5554 22334421 1211 2334689999999853211 111111100
Q ss_pred cccCCCC-CCCCCCCCCceeeEEEEEEc
Q psy12253 122 EQIGRDR-IPSLRYPSDHFSLVCDLTLK 148 (149)
Q Consensus 122 ~~i~~~~-lp~~~~PSDH~pv~a~~~~~ 148 (149)
..+.... .+...++|||+||+|+|+++
T Consensus 274 ~~v~~~~~~~~~~~~SDH~Pv~a~l~~~ 301 (301)
T 1zwx_A 274 WSVKSWFKTYTYQDFSDHYPVVGFTDNN 301 (301)
T ss_dssp EEEEETTEEEEECCSSSSCCEEEEEC--
T ss_pred ceeecccCCccccCCCCCccEEEEEecC
Confidence 0010000 11125899999999999873
No 10
>4fva_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; HET: EDO; 2.07A {Caenorhabditis elegans}
Probab=99.37 E-value=4.8e-12 Score=94.58 Aligned_cols=44 Identities=27% Similarity=0.454 Sum_probs=30.8
Q ss_pred eeeeeeEEEeeCCcceEEEeeeCCCccccCCCCCC-CCCCCCCceeeEEEEE
Q psy12253 96 VCHTIDYVFYSQDKFDVEAVLDMPSGEQIGRDRIP-SLRYPSDHFSLVCDLT 146 (149)
Q Consensus 96 ~~~~IDYIf~~~~~~~v~~~~~~~~~~~i~~~~lp-~~~~PSDH~pv~a~~~ 146 (149)
...+|||||++++ +++.++..+ ....++ ++.|||||+||+|+|.
T Consensus 211 ~~~RiD~I~~~~~-~~~~~~~~~------~~~~~~~~~~~~SDH~pv~a~Fs 255 (256)
T 4fva_A 211 AKMRFDRLYWSGP-LDKVKFTLE------GRQRIRSCLCFPSDHWAINATFF 255 (256)
T ss_dssp CEECCEEEEEESS-CCEEEEEEE------CCSCCTTTCSCSCSSCEEEEEEE
T ss_pred CCcCeEEEEEcCC-ceeeEEEEE------eeEecCCCCCCcCcccCEEEEEc
Confidence 3468999999984 677654221 112233 4689999999999996
No 11
>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A
Probab=99.35 E-value=5.1e-12 Score=101.94 Aligned_cols=121 Identities=17% Similarity=0.224 Sum_probs=67.4
Q ss_pred CCccEEEEEEEeeccCCCEEEEEeecCCCCcHH----------HHHHHHHhc----------------CCCchhHHHHHh
Q psy12253 10 APRQVAVLLVLRNKKTQEEICIATTHLKARNGA----------LLSTLRNEQ----------------EPTEPIYNTVMN 63 (149)
Q Consensus 10 ~~~rv~~~~~l~~~~tg~~~~v~NTHLd~~~~~----------ll~~i~~~~----------------~P~s~~y~~l~~ 63 (149)
...|.++++.++. .|+.|.|+||||++.... +++.+++.. .|.+..+
T Consensus 209 ~~~r~~l~~~i~~--~g~~l~v~ntHL~s~~~~~~~R~~Q~~~l~~~~~~~~~~~~~~pvIl~GDFN~~p~~~~~----- 281 (362)
T 4gew_A 209 GMYRTLQILEGSI--GGLKVFLLNTHLESTREHRPQRCAQFGFCMDKVREIIAQNPGALVFFGGDLNLRDEEVSR----- 281 (362)
T ss_dssp SSCCEEEEEEEEE--TTEEEEEEEEECCCSGGGHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEECCCCGGGCCC-----
T ss_pred cccceEEEEEEEE--CCEEEEEEEecCCccccchhHHHHHHHHHHHHhHhhhhcCCCCCeEEeecCCCCCcccch-----
Confidence 3456666665543 689999999999876521 222222211 2222110
Q ss_pred CCCCCchhhhhhhhcCCCCCceeeeeec-----cCCCeeeeeeEEEeeCCcceEEEeeeCCCccccCCCCCC-CCCCCCC
Q psy12253 64 HETLGLTSAYRHRTANNQEPQYTTWKIR-----EEGEVCHTIDYVFYSQDKFDVEAVLDMPSGEQIGRDRIP-SLRYPSD 137 (149)
Q Consensus 64 ~~~~~l~say~~~~~~~~~p~fT~~~~~-----~~~~~~~~IDYIf~~~~~~~v~~~~~~~~~~~i~~~~lp-~~~~PSD 137 (149)
...+|.|+|... ....+..||-+..+ .......+|||||++++ +++.++-.+ ....++ .+.||||
T Consensus 282 -~~~gl~Da~~~~-~~~~~~~~Tw~~~~n~~~~~~~~~~~RIDyIf~s~~-l~~~~~~vi------~~~ri~~~~~~pSD 352 (362)
T 4gew_A 282 -VPDGVKDAWEAA-GSDNKTKFTWDTFKNDNKQGFHGAKMRFDRLYWSGP-LDKVKFTLE------GRQRIRSCLCFPSD 352 (362)
T ss_dssp -CCTTCEEHHHHT-TCCGGGCCSEETTTCTTSCCSSCCEECCEEEEEESS-CCEEEEEEE------CCSCCTTTSSCSCS
T ss_pred -hcchHHHHHHHh-CCCCCCCcCcccccCcccccCCCCCcceEEEEEcCC-cceeEEEEE------eeeecCCCCCCCCc
Confidence 113578888743 22223344422111 01223468999999984 676654211 112233 4689999
Q ss_pred ceeeEEEEE
Q psy12253 138 HFSLVCDLT 146 (149)
Q Consensus 138 H~pv~a~~~ 146 (149)
|+||+|+|.
T Consensus 353 H~pV~A~FS 361 (362)
T 4gew_A 353 HWAINATFF 361 (362)
T ss_dssp SCEEEEEEE
T ss_pred ccCEEEEEc
Confidence 999999996
No 12
>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.40A {Bacillus cereus} SCOP: d.151.1.3 PDB: 2dds_A 2ddt_A* 2uyr_X
Probab=99.26 E-value=1.3e-11 Score=95.54 Aligned_cols=133 Identities=14% Similarity=0.256 Sum_probs=70.7
Q ss_pred hhcCCCccEEEEEEEeeccCCCEEEEEeecCCCCc-------HH---------HHHHHHHh-----c----------CC-
Q psy12253 6 MKRGAPRQVAVLLVLRNKKTQEEICIATTHLKARN-------GA---------LLSTLRNE-----Q----------EP- 53 (149)
Q Consensus 6 ~w~~~~~rv~~~~~l~~~~tg~~~~v~NTHLd~~~-------~~---------ll~~i~~~-----~----------~P- 53 (149)
+|+...+|.++++.++.. |+.|.|+||||++.. .. |.+.+++. . .|
T Consensus 124 ~~~~~~~r~~~~~~i~~~--g~~~~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~~~~~~~~pvil~GDfN~~~~ 201 (306)
T 2ddr_A 124 GPDNLSNKGFVYTKIKKN--DRFVHVIGTHLQAEDSMCGKTSPASVRTNQLKEIQDFIKNKNIPNNEYVLIGGDMNVNKI 201 (306)
T ss_dssp ----CCCCEEEEEEEEET--TEEEEEEEEECCCC-------CHHHHHHHHHHHHHHHHHHHTCCTTSCEEEEEECCCCCT
T ss_pred CcchhcCCCeEEEEEEeC--CEEEEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHhcCCCCCEEEEEeeCCCCcc
Confidence 466667899999998763 899999999998761 11 44455442 1 66
Q ss_pred -----CchhHHHHHhCCCCCchhhhhhhhcCCCCCceee-------eeeccCCCeeeeeeEEEeeCCcceE---EEeeeC
Q psy12253 54 -----TEPIYNTVMNHETLGLTSAYRHRTANNQEPQYTT-------WKIREEGEVCHTIDYVFYSQDKFDV---EAVLDM 118 (149)
Q Consensus 54 -----~s~~y~~l~~~~~~~l~say~~~~~~~~~p~fT~-------~~~~~~~~~~~~IDYIf~~~~~~~v---~~~~~~ 118 (149)
+++.|+.|... +.+.+. ...+...||.. ++. +.....+|||||++++.... ......
T Consensus 202 ~~d~~~s~~~~~l~~~--~~~~~~----~~~g~~~T~~~~~n~~~~~t~--~~~~~~rID~I~~s~~~~~~~~~~~~~~~ 273 (306)
T 2ddr_A 202 NAENNNDSEYASMFKT--LNASVP----SYTGHTATWDATTNSIAKYNF--PDSPAEYLDYIIASKDHANPSYIENKVLQ 273 (306)
T ss_dssp TTSSCTTSHHHHHHHH--HTBCCC----EEEECSCSBCTTTCHHHHHHC--TTSCCBCCEEEEEBTTSCCCSEEEEEECC
T ss_pred cccccCCHHHHHHHHh--cCCCCc----ccCCCCcccCCCCCccccccC--CCCCcceeeEEEEeCCCCCcccccceeec
Confidence 78888877653 223321 11122334421 111 02234689999999853211 111111
Q ss_pred CCcc--ccCCCC-CCCCCCCCCceeeEEEEEEc
Q psy12253 119 PSGE--QIGRDR-IPSLRYPSDHFSLVCDLTLK 148 (149)
Q Consensus 119 ~~~~--~i~~~~-lp~~~~PSDH~pv~a~~~~~ 148 (149)
+... .+.... .....++|||+||+|+|++|
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~SDH~pv~a~l~~~ 306 (306)
T 2ddr_A 274 PKSPQWTVTSWFQKYTYNDYSDHYPVEATISMK 306 (306)
T ss_dssp CCCCCEEEEETTEEEEECCSCSSCCEEEEEEC-
T ss_pred cccccceeccccccccccCCCCCcceeEEEEeC
Confidence 1000 000000 00126899999999999874
No 13
>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A
Probab=98.96 E-value=6.8e-09 Score=76.83 Aligned_cols=101 Identities=21% Similarity=0.254 Sum_probs=58.7
Q ss_pred CCCEEEEEeecCCCCcHH-----HHHHHHHhc------------CCCc-------------hhHH-HHHhCCCCCchhhh
Q psy12253 25 TQEEICIATTHLKARNGA-----LLSTLRNEQ------------EPTE-------------PIYN-TVMNHETLGLTSAY 73 (149)
Q Consensus 25 tg~~~~v~NTHLd~~~~~-----ll~~i~~~~------------~P~s-------------~~y~-~l~~~~~~~l~say 73 (149)
.|+.|.|+|+|+.+.... +++.|++.. .|++ ..+. ++.. .+|.|++
T Consensus 105 ~~~~~~v~~~y~p~~~~~~~~~~l~~~l~~~~~~~~Il~GDFN~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~d~~ 181 (238)
T 1vyb_A 105 QQEELTILNIYAPNTGAPRFIKQVLSDLQRDLDSHTLIMGDFNTPLSTLDRSTRQKVNKDTQELNSALHQ---ADLIDIY 181 (238)
T ss_dssp TTEEEEEEEEECCSSSHHHHHHHHHHHTTTTCCTTEEEEEECSSCSSGGGBTTCCCCCHHHHHHHHHHHH---TTEEEHH
T ss_pred CCCcEEEEEEecCCCCcHHHHHHHHHHHHhccCCCEEEEccCCCCCCccccCCCCCCcHHHHHHHHHHhh---CCCEEhh
Confidence 578999999999877532 444554321 3332 1122 2223 2588888
Q ss_pred hhhhcCCCCCceeeeeeccCCCeeeeeeEEEeeCCcce--EEEeeeCCCccccCCCCCCCCCCCCCceeeEEEEE
Q psy12253 74 RHRTANNQEPQYTTWKIREEGEVCHTIDYVFYSQDKFD--VEAVLDMPSGEQIGRDRIPSLRYPSDHFSLVCDLT 146 (149)
Q Consensus 74 ~~~~~~~~~p~fT~~~~~~~~~~~~~IDYIf~~~~~~~--v~~~~~~~~~~~i~~~~lp~~~~PSDH~pv~a~~~ 146 (149)
...... ++.||-+..+ +....+|||||++++ +. +.++... ..++|||+||+++|+
T Consensus 182 ~~~~~~--~~~~T~~~~~--~~~~~rID~i~~s~~-~~~~~~~~~v~-------------~~~~SDH~pv~~~l~ 238 (238)
T 1vyb_A 182 RTLHPK--STEYTFFSAP--HHTYSKIDHIVGSKA-LLSKCKRTEII-------------TNYLSDHSAIKLELR 238 (238)
T ss_dssp HHHCTT--CCCCSEEETT--TTEEECCEEEEEEGG-GGGGEEEEEEE-------------CCSSSSSCEEEEEEC
T ss_pred HhhCCC--CCceeEEcCC--CCcccceEEEEeCHH-HHhhhhhceee-------------cCCCCCcccEEEEeC
Confidence 643222 2335444321 334468999999984 33 4443211 147899999999874
No 14
>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli} SCOP: d.151.1.1
Probab=98.92 E-value=3.4e-09 Score=79.91 Aligned_cols=122 Identities=18% Similarity=0.232 Sum_probs=67.1
Q ss_pred CccEEEEEEEeeccCCCEEEEEeecCCCCcH--------H-------HHHHHHHhc--------------CCCchhH---
Q psy12253 11 PRQVAVLLVLRNKKTQEEICIATTHLKARNG--------A-------LLSTLRNEQ--------------EPTEPIY--- 58 (149)
Q Consensus 11 ~~rv~~~~~l~~~~tg~~~~v~NTHLd~~~~--------~-------ll~~i~~~~--------------~P~s~~y--- 58 (149)
..+.++++.++.. |+.|.|+|||+.+... . |.+.+++.. .|++..+
T Consensus 87 ~~~~~~~~~~~~~--~~~~~v~~~Hl~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~Il~GDFN~~~~~~~~~~~ 164 (268)
T 1ako_A 87 AQRRIIMAEIPSL--LGNVTVINGYFPQGESRDHPIKFPAKAQFYQNLQNYLETELKRDNPVLIMGDMNISPTDLDIGIG 164 (268)
T ss_dssp HHTTEEEEEEEET--TEEEEEEEEECCCCCBTTCTTHHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECCCCCSGGGBCSC
T ss_pred cCCCEEEEEEEcC--CCeEEEEEEEecCCCCcccchhHHHHHHHHHHHHHHHHHhhhCCCCEEEEeECCCCCchhcccCc
Confidence 3455677788764 5699999999975431 1 344454321 4554333
Q ss_pred -----------------------HHHHhCCCCCchhhhhhhhcCCCCCceeeeeeccC---CCeeeeeeEEEeeCCcc-e
Q psy12253 59 -----------------------NTVMNHETLGLTSAYRHRTANNQEPQYTTWKIREE---GEVCHTIDYVFYSQDKF-D 111 (149)
Q Consensus 59 -----------------------~~l~~~~~~~l~say~~~~~~~~~p~fT~~~~~~~---~~~~~~IDYIf~~~~~~-~ 111 (149)
+.+.+ .+|.|+|.... ...++.||.|..+.. .....+|||||++++.. .
T Consensus 165 ~~~~~~w~~~~~~~~~~~~~~~~~~l~~---~gl~D~~~~~~-~~~~~~~T~~~~~~~~~~~~~~~riD~il~s~~~~~~ 240 (268)
T 1ako_A 165 EENRKRWLRTGKCSFLPEEREWMDRLMS---WGLVDTFRHAN-PQTADRFSWFDYRSKGFDDNRGLRIDLLLASQPLAEC 240 (268)
T ss_dssp HHHHHHHHHHTBTTSCHHHHHHHHHHHH---TTEEEHHHHHS-TTCCSCCSBCCTTTTHHHHTCCBCCEEEEEEHHHHTT
T ss_pred ccChhhhccCCCcCcCHHHHHHHHHHhc---CCCEEeEhhhC-CCCCCCeeEeCCcCCccccCceEEEEEEEeCHHHHHH
Confidence 22333 25788887432 221233543331100 01236899999998421 2
Q ss_pred EEEeeeCCCccccCCCCCCCCCCCCCceeeEEEEE
Q psy12253 112 VEAVLDMPSGEQIGRDRIPSLRYPSDHFSLVCDLT 146 (149)
Q Consensus 112 v~~~~~~~~~~~i~~~~lp~~~~PSDH~pv~a~~~ 146 (149)
+.++...+. .+...++|||+||+|+|+
T Consensus 241 ~~~~~i~~~--------~~~~~~~SDH~pv~~~l~ 267 (268)
T 1ako_A 241 CVETGIDYE--------IRSMEKPSDHAPVWATFR 267 (268)
T ss_dssp EEEEEECHH--------HHTSSSCCSBCCEEEEEC
T ss_pred HHhceechh--------hcCCCCCCCcccEEEEcc
Confidence 333321110 123468999999999985
No 15
>2imq_X Salivary nitrophorin; ferrous heme, beta-sandwich, transport protein; HET: HEM; 1.30A {Cimex lectularius} SCOP: d.151.1.2 PDB: 1ntf_A* 1y21_A* 1yjh_A* 1si6_X*
Probab=98.91 E-value=1.5e-09 Score=84.69 Aligned_cols=120 Identities=8% Similarity=0.121 Sum_probs=68.3
Q ss_pred CccEEEEEEEeeccCCCEEEEEeecCCCCcH---H-------HHHHHHHhc----------------CCCchhHHHHHhC
Q psy12253 11 PRQVAVLLVLRNKKTQEEICIATTHLKARNG---A-------LLSTLRNEQ----------------EPTEPIYNTVMNH 64 (149)
Q Consensus 11 ~~rv~~~~~l~~~~tg~~~~v~NTHLd~~~~---~-------ll~~i~~~~----------------~P~s~~y~~l~~~ 64 (149)
.++-++++.|+. .|..|+++||||++..+ + |++.++... .|.+.+++.+.++
T Consensus 113 g~kGav~~r~~~--~~~~~~fvn~HL~~~~~~~~~R~~~~~~I~~~~~~~~~~~~vi~~GDfN~r~~~~~~~~~~~i~~~ 190 (282)
T 2imq_X 113 KKSGGIVTSFTI--YNKRFSFTTSRMSDEDVTSTNTKYAYDTRLDYSKKDDPSDFLFWIGDLNVRVETNATHAKSLVDQN 190 (282)
T ss_dssp SCSEEEEEEEEE--TTEEEEEEEEECCTTCCCTTSSSSSCCGGGCTTSSSSCCSEEEEEEECSCCBCSCHHHHHHHHHTT
T ss_pred cCCceEEEEEEE--CCEEEEEEEECCCCCCchHHHHHHHHHHHHHhhhccCccceEEEecccccccCCCHHHHHHHHhhc
Confidence 467788888865 48999999999998631 1 444443211 3445677776553
Q ss_pred CCCCchhhhh--hhhc------------C--CCCCceeeeeecc----CCCeeeeeeEEEeeCC---cceEEEeeeCCCc
Q psy12253 65 ETLGLTSAYR--HRTA------------N--NQEPQYTTWKIRE----EGEVCHTIDYVFYSQD---KFDVEAVLDMPSG 121 (149)
Q Consensus 65 ~~~~l~say~--~~~~------------~--~~~p~fT~~~~~~----~~~~~~~IDYIf~~~~---~~~v~~~~~~~~~ 121 (149)
.+.+.+. ++.. . .-.|||. |.... ......-+|+||+++. .+++.++-..
T Consensus 191 ---~~~~l~~~DqL~~~~~~~~f~~f~e~~i~f~PTYk-~~~~~~~y~~~R~Psw~DrIl~~~~~~~~~~~~~y~~~--- 263 (282)
T 2imq_X 191 ---NIDGLMAFDQLKKAKEQKLFDGWTEPQVTFKPTYK-FKPNTDEYDLSATPSWTDRALYKSGTGKTIQPLSYNSL--- 263 (282)
T ss_dssp ---CHHHHHTTBTHHHHHHTTSSTTCBCCCCCSCCCBC-BCTTSSCBCTTSCCBCCEEEEEECSSSCCEEEEEEEEC---
T ss_pred ---cHHHHhhhhHHHHhhccccccccccCCcCCCCCcc-ccCCCccccccCCccccceEEEecCCCCceEeeEecCC---
Confidence 2333321 1110 0 1134441 22100 0011123699999852 4677665321
Q ss_pred cccCCCCCCCCCCCCCceeeEEEEEEc
Q psy12253 122 EQIGRDRIPSLRYPSDHFSLVCDLTLK 148 (149)
Q Consensus 122 ~~i~~~~lp~~~~PSDH~pv~a~~~~~ 148 (149)
...++|||.||.|.|+++
T Consensus 264 ---------~~~~~SDH~PV~a~f~~~ 281 (282)
T 2imq_X 264 ---------TNYKQTEHRPVLAKFRVT 281 (282)
T ss_dssp ---------TTCCSSSSCCEEEEEEEE
T ss_pred ---------CCCCCCCcCCeEEEEEEE
Confidence 258899999999999875
No 16
>3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A {Staphylococcus aureus} PDB: 3i46_A 3i48_A 3i5v_A* 3k55_A
Probab=98.91 E-value=1e-09 Score=86.35 Aligned_cols=94 Identities=10% Similarity=0.269 Sum_probs=56.9
Q ss_pred hhcCCCccEEEEEEEeeccCCCEEEEEeecCCCCc--------HH--------HHHHHHHh----c-----------CCC
Q psy12253 6 MKRGAPRQVAVLLVLRNKKTQEEICIATTHLKARN--------GA--------LLSTLRNE----Q-----------EPT 54 (149)
Q Consensus 6 ~w~~~~~rv~~~~~l~~~~tg~~~~v~NTHLd~~~--------~~--------ll~~i~~~----~-----------~P~ 54 (149)
+||...+|.++++.++. .|+.|.|+||||++.. .. |.+.|++. . .|+
T Consensus 143 ~~d~~~~r~~~~~~i~~--~g~~v~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~~~~~~~~pvIl~GDfN~~~~ 220 (317)
T 3i41_A 143 GFDNDSNKGFVYTKIEK--NGKNVHVIGTHTQSEDSRCGAGHDRKIRAEQMKEISDFVKKKNIPKDETVYIGGDLNVNKG 220 (317)
T ss_dssp SSGGGBCCEEEEEEEEE--TTEEEEEEEEECCCCCSSSCTTHHHHHHHHHHHHHHHHHHHHTCCTTSCEEEEEECCCCTT
T ss_pred CcccccCcceEEEEEEE--CCEEEEEEEECCCCCCCCCcccccHHHHHHHHHHHHHHHHHhccCCCCeEEEEeECCCCCC
Confidence 46666788888887754 5899999999998753 11 45555542 1 789
Q ss_pred chhHHHHHhCCCCCchhhhhhhhcCCCCCce-------eeeeeccCCCeeeeeeEEEeeCCc
Q psy12253 55 EPIYNTVMNHETLGLTSAYRHRTANNQEPQY-------TTWKIREEGEVCHTIDYVFYSQDK 109 (149)
Q Consensus 55 s~~y~~l~~~~~~~l~say~~~~~~~~~p~f-------T~~~~~~~~~~~~~IDYIf~~~~~ 109 (149)
+.+|+.|.+. +++.++- .. +...+| ..++. +.....+|||||++++.
T Consensus 221 s~~~~~l~~~--l~l~~~~--~~--g~~~t~d~~~n~~~~~~~--p~~~~~rLDyIlvs~~~ 274 (317)
T 3i41_A 221 TPEFKDMLKN--LNVNDVL--YA--GHNSTWDPQSNSIAKYNY--PNGKPEHLDYIFTDKDH 274 (317)
T ss_dssp SHHHHHHHHH--HTBCCCE--EE--ECSCSBCTTTCHHHHHHC--TTCCCBCCEEEEEBTTS
T ss_pred CHHHHHHHHh--cCCCCcc--cC--CCCcccCCCCCccccccC--CCCCCcceEEEEEeCCc
Confidence 9999998764 2333221 10 111122 11111 12234589999999864
No 17
>2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis}
Probab=98.83 E-value=4.9e-09 Score=78.53 Aligned_cols=76 Identities=22% Similarity=0.359 Sum_probs=42.8
Q ss_pred HHHHHhCCCCCchhhhhhhhcCCCCCceeeeeeccC---CCeeeeeeEEEeeCCcce--EEEeeeCCCccccCCCCCCCC
Q psy12253 58 YNTVMNHETLGLTSAYRHRTANNQEPQYTTWKIREE---GEVCHTIDYVFYSQDKFD--VEAVLDMPSGEQIGRDRIPSL 132 (149)
Q Consensus 58 y~~l~~~~~~~l~say~~~~~~~~~p~fT~~~~~~~---~~~~~~IDYIf~~~~~~~--v~~~~~~~~~~~i~~~~lp~~ 132 (149)
++.+.. .+|.|+|.... . .++.||-+..+.. .....+|||||++++ +. +.++..++. ....
T Consensus 176 ~~~l~~---~~l~D~~~~~~-~-~~~~~T~~~~~~~~~~~~~~~rID~i~~s~~-~~~~~~~~~v~~~--------~~~~ 241 (256)
T 2jc4_A 176 FQNLLD---LGLTDSLRQVH-P-EGAFYTWFDYRGAMFQRKLGLRIDHILVSPA-MAAALKDVRVDLE--------TRAL 241 (256)
T ss_dssp HHHHHT---TTCEEHHHHHC-C-SSCCCCBCCTTTTHHHHTCCBCCEEEEECHH-HHTTEEEEEECHH--------HHTS
T ss_pred HHHHHh---cCcEEhhhhhC-C-CCCceeeEcCCCCccccCcEEEEEEEEECHH-HHhheeEEEEEhh--------cccC
Confidence 454443 35888887432 2 1234443321100 012358999999884 44 555432221 0134
Q ss_pred CCCCCceeeEEEEEE
Q psy12253 133 RYPSDHFSLVCDLTL 147 (149)
Q Consensus 133 ~~PSDH~pv~a~~~~ 147 (149)
.++|||+||+|+|++
T Consensus 242 ~~~SDH~pv~~~l~l 256 (256)
T 2jc4_A 242 ERPSDHAPVTAEFDW 256 (256)
T ss_dssp SSCCSBCCEEEEECC
T ss_pred CCCCCcccEEEEecC
Confidence 789999999999875
No 18
>2jc5_A Exodeoxyribonuclease; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: BCN DIO GOL; 1.50A {Neisseria meningitidis}
Probab=98.82 E-value=1.6e-08 Score=75.85 Aligned_cols=66 Identities=26% Similarity=0.359 Sum_probs=39.7
Q ss_pred CchhhhhhhhcCCCCCceeeeeecc---CCCeeeeeeEEEeeCCcce--EEEeeeCCCccccCCCCCCCCCCCCCceeeE
Q psy12253 68 GLTSAYRHRTANNQEPQYTTWKIRE---EGEVCHTIDYVFYSQDKFD--VEAVLDMPSGEQIGRDRIPSLRYPSDHFSLV 142 (149)
Q Consensus 68 ~l~say~~~~~~~~~p~fT~~~~~~---~~~~~~~IDYIf~~~~~~~--v~~~~~~~~~~~i~~~~lp~~~~PSDH~pv~ 142 (149)
+|.|+|...... ++.||.+..+. ......+|||||++++ +. +.++..+ ...++|||+||+
T Consensus 187 ~l~d~~~~~~~~--~~~~T~~~~~~~~~~~~~~~rID~i~~s~~-~~~~~~~~~v~------------~~~~~SDH~pv~ 251 (259)
T 2jc5_A 187 GWTDMWRTLYPD--VPGYTWWSNRGQAYAKDVGWRIDYQMVTPE-LAAKAVSAHVY------------KDEKFSDHAPLV 251 (259)
T ss_dssp CCEEHHHHHCTT--CCCCCEESCSSHHHHTTCEECCEEEEECHH-HHTTEEEEEEC------------CSSCCSSBCCEE
T ss_pred CcEEeeHhhCCC--CCCccEECCcCCCccCCCeeEEEEEEECHH-HHhHHhheeec------------CCCCCCCcccEE
Confidence 588888743221 23354433210 0112368999999874 44 5554221 136899999999
Q ss_pred EEEEEc
Q psy12253 143 CDLTLK 148 (149)
Q Consensus 143 a~~~~~ 148 (149)
|+|+++
T Consensus 252 ~~l~~~ 257 (259)
T 2jc5_A 252 VEYDYA 257 (259)
T ss_dssp EEESCC
T ss_pred EEEecc
Confidence 999874
No 19
>2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease, lyase; 1.7A {Archaeoglobus fulgidus}
Probab=98.75 E-value=2.5e-08 Score=74.94 Aligned_cols=69 Identities=20% Similarity=0.233 Sum_probs=39.2
Q ss_pred CchhhhhhhhcCCCCCceeeeee-cc---CCCeeeeeeEEEeeCCcce--EEEeeeCCCccccCCCCCCCCCCCCCceee
Q psy12253 68 GLTSAYRHRTANNQEPQYTTWKI-RE---EGEVCHTIDYVFYSQDKFD--VEAVLDMPSGEQIGRDRIPSLRYPSDHFSL 141 (149)
Q Consensus 68 ~l~say~~~~~~~~~p~fT~~~~-~~---~~~~~~~IDYIf~~~~~~~--v~~~~~~~~~~~i~~~~lp~~~~PSDH~pv 141 (149)
+|.|+|...... ++.||.+.. +. ......+|||||++++ +. +.++...+.. ....++|||+||
T Consensus 183 ~l~D~~~~~~p~--~~~~T~~~~~~~~~~~~~~~~rID~i~~s~~-~~~~~~~~~v~~~~--------~~~~~~SDH~pv 251 (257)
T 2voa_A 183 GFVDVLRKIHPN--ERIYTFYDYRVKGAIERGLGWRGDAILATPP-LAERCVDCYADIKP--------RLAEKPSDHLPL 251 (257)
T ss_dssp TCEEHHHHHSTT--CCCCSBCCTTSTTTTTTTCCBCCEEEEECHH-HHTTEEEEEECCHH--------HHSSSCCSBCCE
T ss_pred CcEeeehhhCCC--CCCcceeccccCCceecCceEEEEEEEECHH-HHhhhheeEeehhh--------ccCCCCCCccCE
Confidence 588888643211 234544332 11 0123468999999874 44 5554322110 013689999999
Q ss_pred EEEEEE
Q psy12253 142 VCDLTL 147 (149)
Q Consensus 142 ~a~~~~ 147 (149)
+|+|++
T Consensus 252 ~~~l~~ 257 (257)
T 2voa_A 252 VAVFDV 257 (257)
T ss_dssp EEEECC
T ss_pred EEEEeC
Confidence 999864
No 20
>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major}
Probab=98.67 E-value=3e-07 Score=76.53 Aligned_cols=66 Identities=20% Similarity=0.291 Sum_probs=40.3
Q ss_pred CchhhhhhhhcCCCCCceeeeeecc---CCCeeeeeeEEEeeCCcce--EEEeeeCCCccccCCCCCCCCCCCCCceeeE
Q psy12253 68 GLTSAYRHRTANNQEPQYTTWKIRE---EGEVCHTIDYVFYSQDKFD--VEAVLDMPSGEQIGRDRIPSLRYPSDHFSLV 142 (149)
Q Consensus 68 ~l~say~~~~~~~~~p~fT~~~~~~---~~~~~~~IDYIf~~~~~~~--v~~~~~~~~~~~i~~~~lp~~~~PSDH~pv~ 142 (149)
+|.|+|.... ......||-|..+. ......+|||||++++ +. +.++..+ ...++|||+||+
T Consensus 396 gL~DafR~~~-p~~~~~yTw~s~r~~~~~~n~g~RIDyIlvS~~-l~~~v~~~~I~------------~~~~~SDH~PV~ 461 (467)
T 2j63_A 396 NSVDIFRQLY-PQAGPVYSFWSQRINGRPRNLGWRLDYFVVSSR-LASYVVDCFPM------------PTVMGSDHCPFQ 461 (467)
T ss_dssp TEEEHHHHHC-TTBCSCCSBCCTTTTTTTTTCCBCCEEEEEEGG-GGGGEEEEEEC------------TTCCSSSBCCEE
T ss_pred CCEEehHhhC-CCCCCCccccCCCCCcccCCCCceeEEEEEcHH-HHcceeEEEEC------------CCCCCCCcccEE
Confidence 5888887432 21123455444221 0122468999999984 44 6654322 135799999999
Q ss_pred EEEEE
Q psy12253 143 CDLTL 147 (149)
Q Consensus 143 a~~~~ 147 (149)
++|++
T Consensus 462 ~~l~~ 466 (467)
T 2j63_A 462 MWMRH 466 (467)
T ss_dssp EEEEC
T ss_pred EEEEc
Confidence 99985
No 21
>1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein; 2.40A {Bombyx mori} SCOP: d.151.1.1
Probab=98.60 E-value=3e-07 Score=69.02 Aligned_cols=39 Identities=21% Similarity=0.264 Sum_probs=28.8
Q ss_pred eeeeeEEEeeCCcc--eEEEeeeCCCccccCCCCCCCCCCCCCceeeEEEEEEc
Q psy12253 97 CHTIDYVFYSQDKF--DVEAVLDMPSGEQIGRDRIPSLRYPSDHFSLVCDLTLK 148 (149)
Q Consensus 97 ~~~IDYIf~~~~~~--~v~~~~~~~~~~~i~~~~lp~~~~PSDH~pv~a~~~~~ 148 (149)
..+|||||++++ + ++.+.... ...++|||+||+++|++.
T Consensus 204 ~~rID~i~~s~~-~~~~v~~~~v~------------~~~~~SDH~Pv~~~l~l~ 244 (245)
T 1wdu_A 204 QSRVDVTFCTED-MLDLIDGWRVD------------EDLVSSDHNGMVFNIRLQ 244 (245)
T ss_dssp EECCEEEEECGG-GBTTEEEEEEC------------TTSSSSSBCCEEEEECCC
T ss_pred CCEEEEEEeChH-HHhhccceEEc------------CCCCCCCcccEEEEEEeC
Confidence 579999999884 4 45543211 247899999999999875
No 22
>2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease; 1.90A {Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B* 1de9_A* 2o3c_A
Probab=98.54 E-value=3.6e-07 Score=69.77 Aligned_cols=38 Identities=21% Similarity=0.194 Sum_probs=26.9
Q ss_pred eeeeeEEEeeCCcce--EEEeeeCCCccccCCCCCCCCCCCCCceeeEEEEEE
Q psy12253 97 CHTIDYVFYSQDKFD--VEAVLDMPSGEQIGRDRIPSLRYPSDHFSLVCDLTL 147 (149)
Q Consensus 97 ~~~IDYIf~~~~~~~--v~~~~~~~~~~~i~~~~lp~~~~PSDH~pv~a~~~~ 147 (149)
..+|||||++++ +. +.++...+ ...+|||+||+++|++
T Consensus 246 ~~rID~i~~s~~-~~~~v~~~~v~~------------~~~~SDH~pv~~~l~l 285 (285)
T 2o3h_A 246 GWRLDYFLLSHS-LLPALCDSKIRS------------KALGSDHCPITLYLAL 285 (285)
T ss_dssp CBCCEEEEECGG-GGGGEEEEEECT------------TCCSSSBCCEEEEECC
T ss_pred eeEEEEEEECHH-HHhhhhheEeec------------cCCCCCeecEEEEecC
Confidence 358999999984 44 55543211 2357999999999874
No 23
>2a40_B Deoxyribonuclease-1; WAVE, WH2, WAsp, actin, DNAse I, ARP2/3, structural protein; HET: HIC NAG ATP; 1.80A {Bos taurus} SCOP: d.151.1.1 PDB: 1dnk_A* 2a3z_B* 2a41_B* 2a42_B* 2d1k_B* 2dnj_A* 3cjc_D* 3dni_A* 1atn_D*
Probab=98.49 E-value=3.8e-08 Score=74.94 Aligned_cols=29 Identities=14% Similarity=0.250 Sum_probs=24.0
Q ss_pred ccEEEEEEEeeccC-CCEEEEEeecCCCCc
Q psy12253 12 RQVAVLLVLRNKKT-QEEICIATTHLKARN 40 (149)
Q Consensus 12 ~rv~~~~~l~~~~t-g~~~~v~NTHLd~~~ 40 (149)
.|..+++.|+...+ |+.|.|+||||++..
T Consensus 110 ~R~p~~~~~~~~~~~g~~~~vi~~Hl~~~~ 139 (260)
T 2a40_B 110 SREPAVVKFSSHSTKVKEFAIVALHSAPSD 139 (260)
T ss_dssp SSCCEEEEEECTTSSSSEEEEEECCCCGGG
T ss_pred eeCCEEEEEEeCCCCCceEEEEEecCCCCC
Confidence 36677778887766 899999999999875
No 24
>1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair, endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens} SCOP: d.151.1.1 PDB: 1e9n_A 3u8u_A 2isi_A
Probab=98.44 E-value=1.2e-06 Score=68.47 Aligned_cols=38 Identities=21% Similarity=0.194 Sum_probs=26.4
Q ss_pred eeeeeEEEeeCCcce--EEEeeeCCCccccCCCCCCCCCCCCCceeeEEEEEE
Q psy12253 97 CHTIDYVFYSQDKFD--VEAVLDMPSGEQIGRDRIPSLRYPSDHFSLVCDLTL 147 (149)
Q Consensus 97 ~~~IDYIf~~~~~~~--v~~~~~~~~~~~i~~~~lp~~~~PSDH~pv~a~~~~ 147 (149)
..+|||||++++ +. +.++...+ ....|||+||+++|++
T Consensus 279 ~~rID~il~s~~-~~~~v~~~~v~~------------~~~~SDH~Pv~~~l~l 318 (318)
T 1hd7_A 279 GWRLDYFLLSHS-LLPALCDSKIRS------------KALGSDHCPITLYLAL 318 (318)
T ss_dssp CBCCEEEEECGG-GGGGEEEEEECT------------TCCSSSBCCEEEEECC
T ss_pred ceEEEEEEECHH-HHhhhhheEeec------------cCCCCCccCEEEEecC
Confidence 358999999984 44 55542211 2347999999999864
No 25
>3g91_A MTH0212, exodeoxyribonuclease; double-strand specific 3'-5' exonuclease, AP endonuclease; HET: PG4; 1.23A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fzi_A 3g0a_A 3g1k_A 3g2c_A 3g3c_A* 3g3y_A* 3g4t_A* 3g00_A 3g0r_A* 3g2d_A* 3g38_A 3g8v_A* 3ga6_A
Probab=97.97 E-value=1.1e-05 Score=60.90 Aligned_cols=66 Identities=26% Similarity=0.401 Sum_probs=39.7
Q ss_pred CchhhhhhhhcCCCCCceeeeeecc---CCCeeeeeeEEEeeCCcc-eEEEeeeCCCccccCCCCCCCCCCCCCceeeEE
Q psy12253 68 GLTSAYRHRTANNQEPQYTTWKIRE---EGEVCHTIDYVFYSQDKF-DVEAVLDMPSGEQIGRDRIPSLRYPSDHFSLVC 143 (149)
Q Consensus 68 ~l~say~~~~~~~~~p~fT~~~~~~---~~~~~~~IDYIf~~~~~~-~v~~~~~~~~~~~i~~~~lp~~~~PSDH~pv~a 143 (149)
+|.|+|.... ..+..||-|..+. ......+|||||++++.. ++.++... + ...+|||.||++
T Consensus 188 gl~D~~r~~~--p~~~~yT~~~~~~~~~~~~~~~rID~il~s~~~~~~~~~~~i~-----------~-~~~~SDH~Pv~~ 253 (265)
T 3g91_A 188 GYVDTFRMFN--SDPGQYTWWSYRTRARERNVGWRLDYFFVNEEFKGKVKRSWIL-----------S-DVMGSDHCPIGL 253 (265)
T ss_dssp TEEETHHHHC--CCSCCCSBCCSSTTTTTTTCCBCCEEEEEEGGGGGGEEEEEEC-----------T-TCCSSSBCCEEE
T ss_pred CcEEeeHhhC--CCCCCCCCcCCCCCccccCceEEEEEEEECHHHHhhhcEEEEe-----------C-CCCCCCcceEEE
Confidence 5888887432 2233666555321 011235899999998522 45543221 1 246899999999
Q ss_pred EEEE
Q psy12253 144 DLTL 147 (149)
Q Consensus 144 ~~~~ 147 (149)
++.-
T Consensus 254 ~~~~ 257 (265)
T 3g91_A 254 EIEL 257 (265)
T ss_dssp EEEC
T ss_pred Ehhh
Confidence 9863
No 26
>1i9z_A Synaptojanin, phosphatidylinositol phosphate phosphatase; spsynaptojanin, IPP5C, IP3, IP2,, hydrolase; HET: 2IP; 1.80A {Schizosaccharomyces pombe} SCOP: d.151.1.2 PDB: 1i9y_A*
Probab=97.69 E-value=0.00036 Score=55.89 Aligned_cols=34 Identities=21% Similarity=0.368 Sum_probs=26.3
Q ss_pred eEEEeeCCcceEEEeeeCCCccccCCCCCCCCCCCCCceeeEEEEEEc
Q psy12253 101 DYVFYSQDKFDVEAVLDMPSGEQIGRDRIPSLRYPSDHFSLVCDLTLK 148 (149)
Q Consensus 101 DYIf~~~~~~~v~~~~~~~~~~~i~~~~lp~~~~PSDH~pv~a~~~~~ 148 (149)
|+|++++ .+++..+-. .+ ..-|||.||.|.|+++
T Consensus 283 DRIL~~~-~l~~~~Y~~-----------~~--~~~SDH~PV~a~f~~~ 316 (347)
T 1i9z_A 283 DRILYRG-ELVPHSYQS-----------VP--LYYSDHRPIYATYEAN 316 (347)
T ss_dssp EEEEEES-SCEEEEEEE-----------CC--CCSSSBCCEEEEEEEE
T ss_pred ceEEEeC-CEEEEEEEe-----------cC--ccCCCcCCceeEEEEE
Confidence 9999988 578776532 12 5679999999999874
No 27
>2f1n_A CDT B, cytolethal distending toxin subunit B; E.coli, DNAse I, microbatch; 1.73A {Escherichia coli} SCOP: d.151.1.1
Probab=97.64 E-value=2.2e-05 Score=60.63 Aligned_cols=23 Identities=13% Similarity=0.011 Sum_probs=15.6
Q ss_pred ccEEEEEEEeeccCCCEEEEEeecCCCCc
Q psy12253 12 RQVAVLLVLRNKKTQEEICIATTHLKARN 40 (149)
Q Consensus 12 ~rv~~~~~l~~~~tg~~~~v~NTHLd~~~ 40 (149)
.|-++.+.+ | ..+++|||+++..
T Consensus 130 ~Rp~lgiri-----~-~~~ff~tHa~a~~ 152 (262)
T 2f1n_A 130 GRPLLGIRI-----G-NDAFFTAHAIAMR 152 (262)
T ss_dssp CCCEEEEEE-----T-TEEEEEEECCSSS
T ss_pred CCceEEEEE-----C-CEEEEEEEecCCC
Confidence 455555544 2 3789999999874
No 28
>2ei9_A Non-LTR retrotransposon R1BMKS ORF2 protein; four layered alpha beta sandwich, gene regulation; 2.00A {Bombyx mori}
Probab=97.21 E-value=0.00076 Score=50.85 Aligned_cols=46 Identities=15% Similarity=0.011 Sum_probs=30.8
Q ss_pred ceeeeeeccCCCeeeeeeEEEeeCCcceEEEeeeCCCccccCCCCCCCCCCCCCceeeEEEEEE
Q psy12253 84 QYTTWKIREEGEVCHTIDYVFYSQDKFDVEAVLDMPSGEQIGRDRIPSLRYPSDHFSLVCDLTL 147 (149)
Q Consensus 84 ~fT~~~~~~~~~~~~~IDYIf~~~~~~~v~~~~~~~~~~~i~~~~lp~~~~PSDH~pv~a~~~~ 147 (149)
.||-|. .....+|||||++++ +...+.. +. ...+|||.||+++|..
T Consensus 174 ~~T~~s----~~~~~rID~~l~s~~-l~~~~~~-------i~------~~~~SDH~Pv~~~l~~ 219 (240)
T 2ei9_A 174 LPTFST----ANGESYVDVTLSTRG-VRVSEWR-------VT------NESSSDHRLIVFGVGG 219 (240)
T ss_dssp CCSEEE----TTEEECCEEEEECTT-CCEEEEE-------EC------SCCSSSBCCEEEEEEC
T ss_pred CceEeC----CCCceEEEEEEecCc-cccCCeE-------EC------CCCCCCcccEEEEECC
Confidence 465555 233579999999985 4432211 11 2679999999999875
No 29
>2xsw_A 72 kDa inositol polyphosphate 5-phosphatase; inositol signalling, SGC stockholm, structural genomics CONS hydrolase; 1.90A {Homo sapiens}
Probab=96.82 E-value=0.017 Score=46.32 Aligned_cols=37 Identities=22% Similarity=0.161 Sum_probs=26.6
Q ss_pred eeEEEeeCC---cceEEEeeeCCCccccCCCCCCCCCCCCCceeeEEEEEEc
Q psy12253 100 IDYVFYSQD---KFDVEAVLDMPSGEQIGRDRIPSLRYPSDHFSLVCDLTLK 148 (149)
Q Consensus 100 IDYIf~~~~---~~~v~~~~~~~~~~~i~~~~lp~~~~PSDH~pv~a~~~~~ 148 (149)
.|.|++... .+++.++-.. + ....|||.||.|.|+++
T Consensus 282 cDRIL~~~~~~~~i~~~~Y~s~-----------~-~~~~SDHrPV~a~f~v~ 321 (357)
T 2xsw_A 282 TDRVLYRSRHKGDICPVSYSSC-----------P-GIKTSDHRPVYGLFRVK 321 (357)
T ss_dssp CEEEEEEESSTTSEEEEEEEEC-----------T-TCCSSSSCCEEEEEEEE
T ss_pred cceEEEecCCCCceEEEEeEec-----------c-cccCCCcCCceeEEEEE
Confidence 499999752 4666665322 2 46689999999999874
No 30
>3mtc_A Type II inositol-1,4,5-trisphosphate 5-phosphatas; INPP5BA,phosphoinositide 5-phosphatase, inositol signalling, phosphatase, magnesium; HET: PIF; 2.40A {Homo sapiens} PDB: 3n9v_A
Probab=96.44 E-value=0.077 Score=41.85 Aligned_cols=29 Identities=21% Similarity=0.358 Sum_probs=20.9
Q ss_pred CccEEEEEEEeeccCCCEEEEEeecCCCCcH
Q psy12253 11 PRQVAVLLVLRNKKTQEEICIATTHLKARNG 41 (149)
Q Consensus 11 ~~rv~~~~~l~~~~tg~~~~v~NTHLd~~~~ 41 (149)
-|--++.+.|.- .+..||++|+||.+..+
T Consensus 121 GNKGaV~ir~~~--~~ts~cFVnsHLaA~~~ 149 (313)
T 3mtc_A 121 GNKGGVAIRFQF--HNTSICVVNSHLAAHIE 149 (313)
T ss_dssp TTSEEEEEEEEE--TTEEEEEEEEECCCSGG
T ss_pred cCCceEEEEEEE--CCcEEEEEeeccCCCch
Confidence 355566666654 46899999999987753
No 31
>1sr4_B CDT B, cytolethal distending toxin protein B; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: d.151.1.1 PDB: 2f2f_B
Probab=95.97 E-value=0.0059 Score=47.06 Aligned_cols=37 Identities=22% Similarity=0.328 Sum_probs=24.3
Q ss_pred eeeeEEEeeCCc----c----eEEEeeeCCCccccCCCCCCCCCCCCCceeeEE
Q psy12253 98 HTIDYVFYSQDK----F----DVEAVLDMPSGEQIGRDRIPSLRYPSDHFSLVC 143 (149)
Q Consensus 98 ~~IDYIf~~~~~----~----~v~~~~~~~~~~~i~~~~lp~~~~PSDH~pv~a 143 (149)
++||||++++.. + .+..++.. .-+...+.|||+||.+
T Consensus 213 ~~LDyi~~~~~~~~~~~~~~~~~~a~~~~---------~~~~~~~aSDH~PV~~ 257 (261)
T 1sr4_B 213 NILDYAILHDAHLPRREQARERIGASLML---------NQLRSQITSDHFPVSF 257 (261)
T ss_dssp CCCEEEEEECTTSCTTCGGGCCEEEEECG---------GGCSSCCSSSBCCEEE
T ss_pred CcccEEEecCCCcccccccchhhhHHHhh---------hhhhccccCCccceee
Confidence 689999998743 1 23333211 1234688999999987
No 32
>4a9c_A Phosphatidylinositol-3,4,5-trisphosphate 5-phosph; SGC, signalling, structural genomics consortium stockholm, magnesium binding, hydrolase; HET: B5F; 2.10A {Homo sapiens} PDB: 3nr8_B*
Probab=94.01 E-value=1.1 Score=35.13 Aligned_cols=28 Identities=18% Similarity=0.121 Sum_probs=19.9
Q ss_pred CccEEEEEEEeeccCCCEEEEEeecCCCCc
Q psy12253 11 PRQVAVLLVLRNKKTQEEICIATTHLKARN 40 (149)
Q Consensus 11 ~~rv~~~~~l~~~~tg~~~~v~NTHLd~~~ 40 (149)
-|.-++.+.|.- .+..||++|+||.+..
T Consensus 123 GNKGaV~ir~~~--~~ts~~FVn~HLaAg~ 150 (316)
T 4a9c_A 123 GNKGAVGVSFMF--NGTSFGFVNCHLTSGN 150 (316)
T ss_dssp -CEEEEEEEEEE--TTEEEEEEEEECCCST
T ss_pred CCCceEEEEEEE--CCcEEEEEEeccccCc
Confidence 455566666653 4789999999998764
Done!