RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12253
(149 letters)
>d1zwxa1 d.151.1.3 (A:41-333) Sphingomyelin phosphodiesterase C
{Listeria ivanovii [TaxId: 1638]}
Length = 293
Score = 38.4 bits (87), Expect = 1e-04
Identities = 11/96 (11%), Positives = 29/96 (30%), Gaps = 6/96 (6%)
Query: 53 PTEPIYNTVMNHETLGLTSAYRHRTANNQEPQYTTWKIREEGEVCHTIDYVFYSQDKFDV 112
Y+ ++ + + + + A + K +DY+F
Sbjct: 194 YGTDEYHDMLKLLNVSSPANFNGQMATWDPTTNSMLKESYPKAAPEYLDYIFVENGHARP 253
Query: 113 EAVLDMPSGEQIGRDRIPSL------RYPSDHFSLV 142
+ + + + + S + SDH+ +V
Sbjct: 254 HSWHNKVLHTKSPQWSVKSWFKTYTYQDFSDHYPVV 289
>d2ddra1 d.151.1.3 (A:7-305) Sphingomyelin phosphodiesterase C
{Bacillus cereus [TaxId: 1396]}
Length = 299
Score = 36.1 bits (81), Expect = 7e-04
Identities = 12/81 (14%), Positives = 26/81 (32%), Gaps = 6/81 (7%)
Query: 73 YRHRTANNQEPQYTTWKIREEGEVCHTIDYVFYSQDKFDVEAVLD------MPSGEQIGR 126
Y TA + K +DY+ S+D + + + P
Sbjct: 219 YTGHTATWDATTNSIAKYNFPDSPAEYLDYIIASKDHANPSYIENKVLQPKSPQWTVTSW 278
Query: 127 DRIPSLRYPSDHFSLVCDLTL 147
+ + SDH+ + +++
Sbjct: 279 FQKYTYNDYSDHYPVEATISM 299
>d1sr4b_ d.151.1.1 (B:) Cytolethal distending toxin subunit B
{Haemophilus ducreyi [TaxId: 730]}
Length = 261
Score = 35.6 bits (80), Expect = 0.001
Identities = 10/71 (14%), Positives = 18/71 (25%), Gaps = 7/71 (9%)
Query: 69 LTSAYRHRTANNQEPQYTTWKIREEGEVCHTIDYVFYSQDKFDVEAVLDMPSGEQIGRDR 128
P T + + +DY G + ++
Sbjct: 190 RQEPAVSENTIIIAPTEPTHRSG------NILDYAILHDAHLPRREQARERIGASLMLNQ 243
Query: 129 IPSLRYPSDHF 139
+ S + SDHF
Sbjct: 244 LRS-QITSDHF 253
>d2f1na1 d.151.1.1 (A:1-250) Cytolethal distending toxin subunit B
{Escherichia coli [TaxId: 562]}
Length = 250
Score = 32.7 bits (73), Expect = 0.011
Identities = 18/125 (14%), Positives = 25/125 (20%), Gaps = 28/125 (22%)
Query: 31 IATTHLKARNG-----------ALLSTLRNEQEPTEPI-----YNTVMNHETLGLTSAYR 74
T H A R+ +N + LT R
Sbjct: 132 FFTAHAIAMRNNDAPALVEEVYNFFRDSRDPVHQALNWMILGDFNREPADLEMNLTVPVR 191
Query: 75 HRTANNQEPQYTTWKIREEGEVCHTIDYVFYSQDKFDVEAVLDMPSGEQIGRDRIPSLRY 134
+ T R T+DY + L +
Sbjct: 192 RASEIISPAAATQTSQR-------TLDYAVAGNSVAFRPSPLQ-----AGIVYGARRTQI 239
Query: 135 PSDHF 139
SDHF
Sbjct: 240 SSDHF 244
>d2a40b1 d.151.1.1 (B:1-260) Deoxyribonuclease I {Cow (Bos taurus)
[TaxId: 9913]}
Length = 260
Score = 30.7 bits (67), Expect = 0.053
Identities = 13/92 (14%), Positives = 25/92 (27%), Gaps = 3/92 (3%)
Query: 58 YNTVMNHETLGLTSAYRHRTANNQEPQYTTWKIREEGEVCHTIDYVFYSQDKFDVEAVLD 117
+N ++ T S+ R RT++ + D + + V
Sbjct: 169 FNADCSYVTSSQWSSIRLRTSSTFQWLIPDSADTTATSTNCAYDRIVVAGSLLQSSVVPG 228
Query: 118 MPSGEQIGR---DRIPSLRYPSDHFSLVCDLT 146
+ SDH+ + LT
Sbjct: 229 SAAPFDFQAAYGLSNEMALAISDHYPVEVTLT 260
>d1wdua_ d.151.1.1 (A:) Endonuclease domain of TRAS1 retrotransposon
(ORF2) {Silkworm (Bombyx mori) [TaxId: 7091]}
Length = 228
Score = 29.3 bits (64), Expect = 0.17
Identities = 18/92 (19%), Positives = 28/92 (30%), Gaps = 11/92 (11%)
Query: 58 YNTVMNHETLGLTSAYRHRTANNQEPQYTTWKIREEGEVCHTIDYVFYSQDKFDVEAVLD 117
+ L T N+ T IR +D F ++D D
Sbjct: 148 KEDDARGDQLMGTLGELGLHILNEGDVPTFDTIRGGKRYQSRVDVTFCTEDMLD------ 201
Query: 118 MPSGEQIGRDRIPSLRYPSDHFSLVCDLTLKK 149
I R+ SDH +V ++ L+K
Sbjct: 202 -----LIDGWRVDEDLVSSDHNGMVFNIRLQK 228
>d1hd7a_ d.151.1.1 (A:) DNA repair endonuclease Hap1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 275
Score = 28.9 bits (63), Expect = 0.23
Identities = 17/96 (17%), Positives = 27/96 (28%), Gaps = 15/96 (15%)
Query: 55 EPIYNTVMNHETLGLTSAYRHRTANNQEPQYTTWKIREEGEVCHT---IDYVFYSQDKFD 111
+ + + L ++RH N YT W + +DY S
Sbjct: 192 QERQGFGELLQAVPLADSFRHLY-PNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLP 250
Query: 112 VEAVLDMPSGEQIGRDRIPSLRYPSDHFSLVCDLTL 147
+ +I S SDH + L L
Sbjct: 251 -----------ALCDSKIRSKALGSDHCPITLYLAL 275
>d1vyba_ d.151.1.1 (A:) Endonuclease domain of LINE-1 reverse
transcriptase homolog {Human (Homo sapiens) [TaxId:
9606]}
Length = 236
Score = 28.6 bits (62), Expect = 0.28
Identities = 16/84 (19%), Positives = 31/84 (36%), Gaps = 14/84 (16%)
Query: 62 MNHETLGLTSAYRHRTANNQEPQYTTWKIREEGEVCHTIDYVFYSQDKFDVEAVLDMPSG 121
+N +RT + + +YT + ID++ S +A+L
Sbjct: 166 LNSALHQADLIDIYRTLHPKSTEYTFFSAP--HHTYSKIDHIVGS------KALLSKCKR 217
Query: 122 EQIGRDRIPSLRYPSDHFSLVCDL 145
+I + Y SDH ++ +L
Sbjct: 218 TEIITN------YLSDHSAIKLEL 235
>d1akoa_ d.151.1.1 (A:) DNA-repair enzyme exonuclease III
{Escherichia coli [TaxId: 562]}
Length = 268
Score = 28.2 bits (61), Expect = 0.39
Identities = 10/46 (21%), Positives = 17/46 (36%), Gaps = 7/46 (15%)
Query: 100 IDYVFYSQDKFDVEAVLDMPSGEQIGRDRIPSLRYPSDHFSLVCDL 145
ID + S + + + I + I S+ PSDH +
Sbjct: 228 IDLLLAS------QPLAECCVETGIDYE-IRSMEKPSDHAPVWATF 266
>d2z1ea2 d.139.1.1 (A:156-334) Hydrogenase expression/formation
protein HypE {Thermococcus kodakaraensis [TaxId:
311400]}
Length = 179
Score = 27.5 bits (60), Expect = 0.58
Identities = 5/31 (16%), Positives = 11/31 (35%)
Query: 94 GEVCHTIDYVFYSQDKFDVEAVLDMPSGEQI 124
GEV + + ++ P G+ +
Sbjct: 149 GEVIADYRGKVLLETGIGGKRFMEPPEGDPV 179
>d2f01a1 b.61.1.1 (A:14-134) Streptavidin {Streptomyces avidinii
[TaxId: 1895]}
Length = 121
Score = 24.8 bits (54), Expect = 2.8
Identities = 4/32 (12%), Positives = 7/32 (21%)
Query: 79 NNQEPQYTTWKIREEGEVCHTIDYVFYSQDKF 110
+ T W + + D F
Sbjct: 86 GAEARINTQWLLTSGTTEANAWKSTLVGHDTF 117
>d1atia1 c.51.1.1 (A:395-505) Glycyl-tRNA synthetase (GlyRS),
C-terminal domain {Thermus thermophilus [TaxId: 274]}
Length = 111
Score = 23.5 bits (50), Expect = 9.2
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 10 APRQVAVLLVLRNKKTQEEIC 30
AP +VAV+ +++N+ E
Sbjct: 3 APIKVAVIPLVKNRPEITEYA 23
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.134 0.392
Gapped
Lambda K H
0.267 0.0469 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 528,980
Number of extensions: 21671
Number of successful extensions: 49
Number of sequences better than 10.0: 1
Number of HSP's gapped: 46
Number of HSP's successfully gapped: 13
Length of query: 149
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 72
Effective length of database: 1,350,386
Effective search space: 97227792
Effective search space used: 97227792
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.3 bits)