BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12256
(417 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3EGJ|A Chain A, N-Acetylglucosamine-6-Phosphate Deacetylase From Vibrio
Cholerae.
pdb|3EGJ|B Chain B, N-Acetylglucosamine-6-Phosphate Deacetylase From Vibrio
Cholerae.
pdb|3IV8|A Chain A, N-Acetylglucosamine-6-Phosphate Deacetylase From Vibrio
Cholerae Complexed With Fructose 6-Phosphate
pdb|3IV8|B Chain B, N-Acetylglucosamine-6-Phosphate Deacetylase From Vibrio
Cholerae Complexed With Fructose 6-Phosphate
pdb|3IV8|C Chain C, N-Acetylglucosamine-6-Phosphate Deacetylase From Vibrio
Cholerae Complexed With Fructose 6-Phosphate
pdb|3IV8|D Chain D, N-Acetylglucosamine-6-Phosphate Deacetylase From Vibrio
Cholerae Complexed With Fructose 6-Phosphate
Length = 381
Score = 140 bits (352), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 87/229 (37%), Positives = 132/229 (57%), Gaps = 10/229 (4%)
Query: 7 DCGGKLIAPGFIDIQINGGFGVDFSHDIDSVDKNVSIVARGILAHGVTSFCPTLVTSEPQ 66
D G ++PGFID+Q+NG GV F+ +I + + + + + L G TSF PTL+TS +
Sbjct: 48 DLNGANLSPGFIDLQLNGCGGVMFNDEITA--ETIDTMHKANLKSGCTSFLPTLITSSDE 105
Query: 67 VYKKVLSRLRKTPGGKHGATVLGAHVEGPFISPDKKGAHSLSKIVTFDKGFDSVREVYGN 126
++ ++ R+ K+ LG H+EGP+++ KKG HS+ I D + + N
Sbjct: 106 NMRQAIAAAREYQA-KYPNQSLGLHLEGPYLNVMKKGIHSVDFIRPSDDTM--IDTICAN 162
Query: 127 LSNIAIITLAPELAGSMEVIDKLVEQGITVSLGHSSADINIAEEAVRHGASLITHLFNAM 186
IA +TLAPE E I+KLV+ GI VS+GH++A + A ++ G + THLFNAM
Sbjct: 163 SDVIAKVTLAPE-NNKPEHIEKLVKAGIVVSIGHTNATYSEARKSFESGITFATHLFNAM 221
Query: 187 LPFHHRDPGIIGLLSSDNIDSSKVYYGIIADGVHTHPSALRIANSTHPE 235
P R+PG++G + D+ +VY GIIADG H + +RIA+ E
Sbjct: 222 TPMVGREPGVVGAI----YDTPEVYAGIIADGFHVDYANIRIAHKIKGE 266
Score = 89.0 bits (219), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 96/191 (50%), Gaps = 16/191 (8%)
Query: 236 GHSSADIHIAEEAVRHGASLITHLFNAMLPFHHRDPGIIGLLSSDNIDSSKVYYGIIADG 295
GH++A A ++ G + THLFNAM P R+PG++G + D+ +VY GIIADG
Sbjct: 194 GHTNATYSEARKSFESGITFATHLFNAMTPMVGREPGVVGAI----YDTPEVYAGIIADG 249
Query: 296 VHTHPSALRIANSTHPEG------SITPFNGCVQFFMRSTRCSLWFDLGNCNN-----GG 344
H + +RIA+ E + P + +F+ + +++ G C + GG
Sbjct: 250 FHVDYANIRIAHKIKGEKLVLVTDATAPAGAEMDYFIFVGK-KVYYRDGKCVDENGTLGG 308
Query: 345 SITPFNGCVQFFMRSTRCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILDEGLH 404
S VQ + +L AL +A+L+PAKA+G+++ G + G A+ + D +
Sbjct: 309 SALTMIEAVQNTVEHVGIALDEALRMATLYPAKAIGVDEKLGRIKKGMIANLTVFDRDFN 368
Query: 405 VYSTWIAGDLK 415
V +T + G +
Sbjct: 369 VKATVVNGQYE 379
>pdb|2VHL|A Chain A, The Three-Dimensional Structure Of The
N-Acetylglucosamine- 6-Phosphate Deacetylase From
Bacillus Subtilis
pdb|2VHL|B Chain B, The Three-Dimensional Structure Of The
N-Acetylglucosamine- 6-Phosphate Deacetylase From
Bacillus Subtilis
Length = 396
Score = 139 bits (349), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 120/409 (29%), Positives = 182/409 (44%), Gaps = 82/409 (20%)
Query: 12 LIAPGFIDIQINGGFGVDFSHDIDSVDKNVSIVARGILAHGVTSFCPTLVTSEPQVYKKV 71
++ PG IDI I+GG+G D +D+ + I++ + G TSF T +T E +
Sbjct: 54 VLLPGMIDIHIHGGYGAD---TMDASFSTLDIMSSRLPEEGTTSFLATTITQEHGNISQA 110
Query: 72 LSRLRKTPGGKH----GATVLGAHVEGPFISPDKKGAHSLSKIVTFD-KGFDSVREVYGN 126
L R+ + GA +LG H+EGPF+SP + GA I D + F ++ G
Sbjct: 111 LVNAREWKAAEESSLLGAELLGIHLEGPFVSPKRAGAQPKEWIRPSDVELFKKWQQEAGG 170
Query: 127 LSNIAIITLAPELAGSMEVIDKLVEQGITVSLGHSSADINIAEEAVRHGASLITHLFNAM 186
L I I+TLAPE E+I L ++ I S+GH+ AD + +A + GAS +THL+NAM
Sbjct: 171 L--IKIVTLAPEEDQHFELIRHLKDESIIASMGHTDADSALLSDAAKAGASHMTHLYNAM 228
Query: 187 LPFHHRDPGIIGL-LSSDNIDSSKVYYGIIADGVHTHPSALRIANSTHPEGHSSADIHIA 245
PFHHR+PG+IG L+ D + +IADG+H+HP A ++A
Sbjct: 229 SPFHHREPGVIGTALAHDGFVTE-----LIADGIHSHPLAAKLA---------------- 267
Query: 246 EEAVRHGASLITHLFNAMLPFHHRDPGIIGLLSSDNIDSSKVYYGIIADGVHTHPSALRI 305
+ G+S + + ++M R G+ D + Y V +
Sbjct: 268 --FLAKGSSKLILITDSM-----RAKGL-----KDGV------YEFGGQSVTVRGRTALL 309
Query: 306 ANSTHPEGSITPFNGCVQFFMRSTRCSLWFDLGNCNNGGSITPFNGCVQFFMRSTRCSLV 365
++ T GSI N + T CS W D+ N
Sbjct: 310 SDGTLA-GSILKMNEGARHMREFTNCS-WTDIAN-------------------------- 341
Query: 366 HALEVASLHPAKALGLEQHKGTLDFGADADFVILDEGLHVYSTWIAGDL 414
+ S + AK LG+ KG++ G DAD VI+ V T G++
Sbjct: 342 ----ITSENAAKQLGIFDRKGSVTVGKDADLVIVSSDCEVILTICRGNI 386
>pdb|2P53|A Chain A, Crystal Structure Of N-acetyl-d-glucosamine-6-phosphate
Deacetylase D273n Mutant Complexed With N-acetyl
Phosphonamidate-d-glucosamine-6- Phosphate
pdb|2P53|B Chain B, Crystal Structure Of N-acetyl-d-glucosamine-6-phosphate
Deacetylase D273n Mutant Complexed With N-acetyl
Phosphonamidate-d-glucosamine-6- Phosphate
Length = 382
Score = 130 bits (327), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 83/240 (34%), Positives = 132/240 (55%), Gaps = 21/240 (8%)
Query: 10 GKLIAPGFIDIQINGGFGVDFSHDIDSVD-KNVSIVARGILAHGVTSFCPTLVTSEPQVY 68
G +++PGFID+Q+NG GV F+ ++V + + I+ + G T++ PTL+T+ ++
Sbjct: 48 GAILSPGFIDVQLNGCGGVQFNDTAEAVSVETLEIMQKANEKSGCTNYLPTLITTSDELM 107
Query: 69 KKVLSRLRKTPGGKHGATVLGAHVEGPFISPDKKGAHSLSKIVTFDKGFDSVREVYGNLS 128
K+ + +R+ KH LG H+EGP+++ KKG H+ + + D V + N
Sbjct: 108 KQGVRVMREYLA-KHPNQALGLHLEGPWLNLVKKGTHNPNFVRKPDAAL--VDFLCENAD 164
Query: 129 NIAIITLAPELAGSMEVIDKLVEQGITVSLGHSSADINIAEEAVRHGASLITHLFNAMLP 188
I +TLAPE+ + EVI KL GI VS GHS+A + A+ R G + THL+NAM
Sbjct: 165 VITKVTLAPEMVPA-EVISKLANAGIVVSAGHSNATLKEAKAGFRAGITFATHLYNAMPY 223
Query: 189 FHHRDPGIIGLLSSDNIDSSKVYYGIIADGVHTHPSALR------------IANSTHPEG 236
R+PG+ G + +D + +Y GIIADG+H + +R + N+T P G
Sbjct: 224 ITGREPGLAGAI----LDEADIYCGIIADGLHVDYANIRNAKRLKGDKLCLVTNATAPAG 279
Score = 79.0 bits (193), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 94/197 (47%), Gaps = 24/197 (12%)
Query: 236 GHSSADIHIAEEAVRHGASLITHLFNAMLPFHHRDPGIIGLLSSDNIDSSKVYYGIIADG 295
GHS+A + A+ R G + THL+NAM R+PG+ G + +D + +Y GIIADG
Sbjct: 194 GHSNATLKEAKAGFRAGITFATHLYNAMPYITGREPGLAGAI----LDEADIYCGIIADG 249
Query: 296 VHTHPSALR------------IANSTHPEGSITP---FNGCVQFFMRSTRCSLWFDLGNC 340
+H + +R + N+T P G+ F G ++ R L D
Sbjct: 250 LHVDYANIRNAKRLKGDKLCLVTNATAPAGANIEQFIFAGKTIYY----RNGLCVDENGT 305
Query: 341 NNGGSITPFNGCVQFFMRSTRCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILD 400
+G S+T G V+ + +L L +A+L+PA+A+G+E+ GTL G A+
Sbjct: 306 LSGSSLTMIEG-VRNLVEHCGIALDEVLRMATLYPARAIGVEKRLGTLAAGKVANLTAFT 364
Query: 401 EGLHVYSTWIAGDLKLT 417
+ T + G+ +T
Sbjct: 365 PDFKITKTIVNGNEVVT 381
>pdb|1YMY|A Chain A, Crystal Structure Of The N-Acetylglucosamine-6-Phosphate
Deacetylase From Escherichia Coli K12
pdb|1YMY|B Chain B, Crystal Structure Of The N-Acetylglucosamine-6-Phosphate
Deacetylase From Escherichia Coli K12
pdb|1YRR|A Chain A, Crystal Structure Of The N-Acetylglucosamine-6-Phosphate
Deacetylase From Escherichia Coli K12 At 2.0 A
Resolution
pdb|1YRR|B Chain B, Crystal Structure Of The N-Acetylglucosamine-6-Phosphate
Deacetylase From Escherichia Coli K12 At 2.0 A
Resolution
pdb|2P50|A Chain A, Crystal Structure Of N-Acetyl-D-Glucosamine-6-Phosphate
Deacetylase Liganded With Zn
pdb|2P50|B Chain B, Crystal Structure Of N-Acetyl-D-Glucosamine-6-Phosphate
Deacetylase Liganded With Zn
pdb|2P50|C Chain C, Crystal Structure Of N-Acetyl-D-Glucosamine-6-Phosphate
Deacetylase Liganded With Zn
pdb|2P50|D Chain D, Crystal Structure Of N-Acetyl-D-Glucosamine-6-Phosphate
Deacetylase Liganded With Zn
Length = 382
Score = 129 bits (325), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 80/221 (36%), Positives = 127/221 (57%), Gaps = 9/221 (4%)
Query: 10 GKLIAPGFIDIQINGGFGVDFSHDIDSVD-KNVSIVARGILAHGVTSFCPTLVTSEPQVY 68
G +++PGFID+Q+NG GV F+ ++V + + I+ + G T++ PTL+T+ ++
Sbjct: 48 GAILSPGFIDVQLNGCGGVQFNDTAEAVSVETLEIMQKANEKSGCTNYLPTLITTSDELM 107
Query: 69 KKVLSRLRKTPGGKHGATVLGAHVEGPFISPDKKGAHSLSKIVTFDKGFDSVREVYGNLS 128
K+ + +R+ KH LG H+EGP+++ KKG H+ + + D V + N
Sbjct: 108 KQGVRVMREYLA-KHPNQALGLHLEGPWLNLVKKGTHNPNFVRKPDAAL--VDFLCENAD 164
Query: 129 NIAIITLAPELAGSMEVIDKLVEQGITVSLGHSSADINIAEEAVRHGASLITHLFNAMLP 188
I +TLAPE+ + EVI KL GI VS GHS+A + A+ R G + THL+NAM
Sbjct: 165 VITKVTLAPEMVPA-EVISKLANAGIVVSAGHSNATLKEAKAGFRAGITFATHLYNAMPY 223
Query: 189 FHHRDPGIIGLLSSDNIDSSKVYYGIIADGVHTHPSALRIA 229
R+PG+ G + +D + +Y GIIADG+H + +R A
Sbjct: 224 ITGREPGLAGAI----LDEADIYCGIIADGLHVDYANIRNA 260
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 94/197 (47%), Gaps = 24/197 (12%)
Query: 236 GHSSADIHIAEEAVRHGASLITHLFNAMLPFHHRDPGIIGLLSSDNIDSSKVYYGIIADG 295
GHS+A + A+ R G + THL+NAM R+PG+ G + +D + +Y GIIADG
Sbjct: 194 GHSNATLKEAKAGFRAGITFATHLYNAMPYITGREPGLAGAI----LDEADIYCGIIADG 249
Query: 296 VHTHPSALR------------IANSTHPEGSITP---FNGCVQFFMRSTRCSLWFDLGNC 340
+H + +R + ++T P G+ F G ++ R L D
Sbjct: 250 LHVDYANIRNAKRLKGDKLCLVTDATAPAGANIEQFIFAGKTIYY----RNGLCVDENGT 305
Query: 341 NNGGSITPFNGCVQFFMRSTRCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILD 400
+G S+T G V+ + +L L +A+L+PA+A+G+E+ GTL G A+
Sbjct: 306 LSGSSLTMIEG-VRNLVEHCGIALDEVLRMATLYPARAIGVEKRLGTLAAGKVANLTAFT 364
Query: 401 EGLHVYSTWIAGDLKLT 417
+ T + G+ +T
Sbjct: 365 PDFKITKTIVNGNEVVT 381
>pdb|1O12|A Chain A, Crystal Structure Of N-Acetylglucosamine-6-Phosphate
Deacetylase (Tm0814) From Thermotoga Maritima At 2.5 A
Resolution
pdb|1O12|B Chain B, Crystal Structure Of N-Acetylglucosamine-6-Phosphate
Deacetylase (Tm0814) From Thermotoga Maritima At 2.5 A
Resolution
Length = 376
Score = 98.6 bits (244), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 111/408 (27%), Positives = 171/408 (41%), Gaps = 93/408 (22%)
Query: 12 LIAPGFIDIQINGGFGVDFSHDIDSVDKNVSIVARGILAHGVTSFCPTLVTSEPQVYKKV 71
++ PGF+D I+G G D + + + S + + GVT+F T V++ + K++
Sbjct: 52 VLXPGFVDPHIHGVVGAD------TXNCDFSEXEEFLYSQGVTTFLATTVSTSLEKXKEI 105
Query: 72 LSRLRKTPGGKHGATVLGAHVEGPFISPDKKGAHSLSKIVTFDKGFDSVREVYGNLSNIA 131
L + R ++LG H+EGP+IS +KKGAHS I S RE+ S
Sbjct: 106 LRKARDYILENPSTSLLGVHLEGPYISKEKKGAHSEKHIRP-----PSERELSEIDSPAK 160
Query: 132 IITLAPELAGSMEVIDKLVEQGITVSLGHSSADINIAEEAVRHGASLITHLFNAMLPFHH 191
+T APE+ S E++ +LV++ I +S GHS A + + G ITH N + P HH
Sbjct: 161 XLTFAPEIESS-ELLLRLVKRDIVLSAGHSIATFEEFXKFYKEGVKRITHFPNGLKPLHH 219
Query: 192 RDPGII--GLLSSDNIDSSKVYYGIIADGVHTHPSALRIANSTHPEGHSSADIHIAEEAV 249
R+ GI GLL D V +I DGVH
Sbjct: 220 REIGITGAGLLLDD------VKLELICDGVHLS--------------------------- 246
Query: 250 RHGASLITHLFNAMLPFHHRDPGIIGLLSSDNIDSSKVYYGIIADG---VHTHPSALRIA 306
R L+ + A GI+ L +D+I ++ + G G V R+
Sbjct: 247 REXVKLVYKVKKAN--------GIV--LVTDSISAAGLKDGTTTLGDLVVKVKDGVPRLE 296
Query: 307 NSTHPEGSITPFNGCVQFFMRSTRCSLWFDLGNCNNGGSITPFNGCVQFFMRSTRCSLVH 366
+ T GS F+ V+ F + T CS+ ++ +N CV+
Sbjct: 297 DGTLA-GSTLFFSQAVKNFRKFTGCSI-------TELAKVSSYNSCVE------------ 336
Query: 367 ALEVASLHPAKALGLEQHKGTLDFGADADFVILDEGLHVYSTWIAGDL 414
LGL+ +G + G AD V+LDE L+V T G++
Sbjct: 337 ------------LGLDD-RGRIAEGTRADLVLLDEDLNVVXTIKEGEV 371
>pdb|1NFG|A Chain A, Structure Of D-Hydantoinase
pdb|1NFG|B Chain B, Structure Of D-Hydantoinase
pdb|1NFG|C Chain C, Structure Of D-Hydantoinase
pdb|1NFG|D Chain D, Structure Of D-Hydantoinase
Length = 457
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 24/40 (60%)
Query: 361 RCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILD 400
R SL +E+ + PAK G+ KGT+ G+DAD V+ D
Sbjct: 355 RISLTQFVELVATRPAKVFGMFPQKGTIAVGSDADIVLWD 394
>pdb|3HM7|A Chain A, Crystal Structure Of Allantoinase From Bacillus Halodurans
C-125
pdb|3HM7|B Chain B, Crystal Structure Of Allantoinase From Bacillus Halodurans
C-125
pdb|3HM7|C Chain C, Crystal Structure Of Allantoinase From Bacillus Halodurans
C-125
pdb|3HM7|D Chain D, Crystal Structure Of Allantoinase From Bacillus Halodurans
C-125
pdb|3HM7|E Chain E, Crystal Structure Of Allantoinase From Bacillus Halodurans
C-125
pdb|3HM7|F Chain F, Crystal Structure Of Allantoinase From Bacillus Halodurans
C-125
Length = 448
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 5/69 (7%)
Query: 332 SLWFDLGNCNNGGSITPFNGCVQFFMRSTRCSLVHALEVASLHPAKALGLEQHKGTLDFG 391
+W + C N ++ G + L +++ S PAK GL KGT+ G
Sbjct: 333 EVWGGIAGCQNTLAVMLTEG-----YHKRKMPLTQIVQLLSTEPAKRFGLYPQKGTIQVG 387
Query: 392 ADADFVILD 400
A+A F ++D
Sbjct: 388 AEASFTLID 396
>pdb|1YNY|A Chain A, Molecular Structure Of D-Hydantoinase From A Bacillus Sp.
Ar9: Evidence For Mercury Inhibition
pdb|1YNY|B Chain B, Molecular Structure Of D-Hydantoinase From A Bacillus Sp.
Ar9: Evidence For Mercury Inhibition
Length = 461
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%)
Query: 357 MRSTRCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILD 400
+R R SL ++++S AK G+ KGT+ G+DAD VI D
Sbjct: 354 VRQGRISLNQFVDISSTKAAKLFGMFPRKGTIAVGSDADIVIFD 397
>pdb|3SFW|A Chain A, Crystal Structure Of Dihydropyrimidinase From
Brevibacillus Agri Nchu1002
pdb|3SFW|B Chain B, Crystal Structure Of Dihydropyrimidinase From
Brevibacillus Agri Nchu1002
Length = 461
Score = 36.2 bits (82), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 336 DLGNCNNGGSITPFNGCVQFF--MRSTRCSLVHALEVASLHPAKALGLEQHKGTLDFGAD 393
D NGG I + F +R + SL +++ S AK G+ KGT+ G+D
Sbjct: 331 DFTKIPNGGPIIEDRMTILFSEGVRKGKISLNQFVDITSTKVAKLFGMFPQKGTIAVGSD 390
Query: 394 ADFVILD 400
AD V+ D
Sbjct: 391 ADIVLFD 397
>pdb|1K1D|A Chain A, Crystal Structure Of D-Hydantoinase
pdb|1K1D|B Chain B, Crystal Structure Of D-Hydantoinase
pdb|1K1D|C Chain C, Crystal Structure Of D-Hydantoinase
pdb|1K1D|D Chain D, Crystal Structure Of D-Hydantoinase
pdb|1K1D|E Chain E, Crystal Structure Of D-Hydantoinase
pdb|1K1D|F Chain F, Crystal Structure Of D-Hydantoinase
pdb|1K1D|G Chain G, Crystal Structure Of D-Hydantoinase
pdb|1K1D|H Chain H, Crystal Structure Of D-Hydantoinase
Length = 460
Score = 36.2 bits (82), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 42/93 (45%), Gaps = 12/93 (12%)
Query: 319 NGCVQFFMRSTRCSLWF---------DLGNCNNGGSITPFNGCVQFF--MRSTRCSLVHA 367
NG +Q + S +CS F D NGG I + F ++ R +L
Sbjct: 306 NGQLQT-LGSDQCSFDFKGQKELGRGDFTKIPNGGPIIEDRVSILFSEGVKKGRITLNQF 364
Query: 368 LEVASLHPAKALGLEQHKGTLDFGADADFVILD 400
+++ S AK GL KGT+ G+DAD VI D
Sbjct: 365 VDIVSTRIAKLFGLFPKKGTIVVGSDADLVIFD 397
>pdb|2O1X|A Chain A, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
pdb|2O1X|B Chain B, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
pdb|2O1X|C Chain C, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
pdb|2O1X|D Chain D, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
Length = 629
Score = 36.2 bits (82), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 1/92 (1%)
Query: 312 EGSITPFNGCVQFFMRSTRCSLWFDLGNCNNGGSITPFNGCVQFFMRSTRCSLVHALEVA 371
E SI+ G + FMR + WF G ++ + + FM + S H + A
Sbjct: 184 EMSISENVGAMNKFMRGLQVQKWFQEGEGAGKKAVEAVSKPLADFMSRAKNSTRHFFDPA 243
Query: 372 SLHPAKALGLEQHKGTLDFGADADFVILDEGL 403
S++P A+G+ ++ G +D + V L E L
Sbjct: 244 SVNPFAAMGV-RYVGPVDGHNVQELVWLLERL 274
>pdb|2GOK|A Chain A, Crystal Structure Of The Imidazolonepropionase From
Agrobacterium Tumefaciens At 1.87 A Resolution
pdb|2GOK|B Chain B, Crystal Structure Of The Imidazolonepropionase From
Agrobacterium Tumefaciens At 1.87 A Resolution
Length = 429
Score = 35.4 bits (80), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 30/68 (44%), Gaps = 11/68 (16%)
Query: 339 NCNNGGS------ITPFNGCVQFFMRSTRCSLVHALEVASLHPAKALGLEQHKGTLDFGA 392
+CN G S +T G F M C L + + AKALGL GTL+ G
Sbjct: 331 DCNPGTSPLTSLLLTMNMGATLFRMTVEEC-----LTATTRNAAKALGLLAETGTLEAGK 385
Query: 393 DADFVILD 400
ADF I D
Sbjct: 386 SADFAIWD 393
>pdb|2PUZ|A Chain A, Crystal Structure Of Imidazolonepropionase From
Agrobacterium Tumefaciens With Bound Product
N-Formimino-L-Glutamate
pdb|2PUZ|B Chain B, Crystal Structure Of Imidazolonepropionase From
Agrobacterium Tumefaciens With Bound Product
N-Formimino-L-Glutamate
Length = 419
Score = 35.4 bits (80), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 30/68 (44%), Gaps = 11/68 (16%)
Query: 339 NCNNGGS------ITPFNGCVQFFMRSTRCSLVHALEVASLHPAKALGLEQHKGTLDFGA 392
+CN G S +T G F M C L + + AKALGL GTL+ G
Sbjct: 329 DCNPGTSPLTSLLLTMNMGATLFRMTVEEC-----LTATTRNAAKALGLLAETGTLEAGK 383
Query: 393 DADFVILD 400
ADF I D
Sbjct: 384 SADFAIWD 391
>pdb|1GKR|A Chain A, L-Hydantoinase (Dihydropyrimidinase) From Arthrobacter
Aurescens
pdb|1GKR|B Chain B, L-Hydantoinase (Dihydropyrimidinase) From Arthrobacter
Aurescens
pdb|1GKR|C Chain C, L-Hydantoinase (Dihydropyrimidinase) From Arthrobacter
Aurescens
pdb|1GKR|D Chain D, L-Hydantoinase (Dihydropyrimidinase) From Arthrobacter
Aurescens
Length = 458
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Query: 334 WFDLGNCNNG--GSITPFNGCVQFFMRSTRCSLVHALEVASLHPAKALGLEQHKGTLDFG 391
W D+ NG G T + + R SL +EV PAK G+ KGTL G
Sbjct: 325 WKDVWKAGNGALGLETSLPMMLTNGVNKGRLSLERLVEVMCEKPAKLFGIYPQKGTLQVG 384
Query: 392 ADA 394
+DA
Sbjct: 385 SDA 387
>pdb|3OOQ|A Chain A, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|B Chain B, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|C Chain C, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|D Chain D, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|E Chain E, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|F Chain F, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|G Chain G, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|H Chain H, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|I Chain I, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|J Chain J, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
Length = 396
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 23/31 (74%)
Query: 368 LEVASLHPAKALGLEQHKGTLDFGADADFVI 398
L++ +++PAK LGLE G+++ G DAD V+
Sbjct: 333 LKILTVNPAKILGLEDRIGSIEPGKDADLVV 363
>pdb|4DYK|A Chain A, Crystal Structure Of An Adenosine Deaminase From
Pseudomonas Aeruginosa Pao1 (Target Nysgrc-200449) With
Bound Zn
pdb|4DYK|B Chain B, Crystal Structure Of An Adenosine Deaminase From
Pseudomonas Aeruginosa Pao1 (Target Nysgrc-200449) With
Bound Zn
Length = 451
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 24/35 (68%)
Query: 366 HALEVASLHPAKALGLEQHKGTLDFGADADFVILD 400
AL +A+L+ A+ALGLE+ G+L+ G AD V D
Sbjct: 344 RALRMATLNGARALGLERLIGSLEAGKAADLVAFD 378
>pdb|2FTY|A Chain A, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri
pdb|2FTY|B Chain B, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri
pdb|2FTY|C Chain C, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri
pdb|2FTY|D Chain D, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri
pdb|2FVK|A Chain A, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Substrate
Dihydrouracil
pdb|2FVK|B Chain B, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Substrate
Dihydrouracil
pdb|2FVK|C Chain C, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Substrate
Dihydrouracil
pdb|2FVK|D Chain D, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Substrate
Dihydrouracil
pdb|2FVM|A Chain A, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Reaction
Product N-carbamyl-beta-alanine
pdb|2FVM|B Chain B, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Reaction
Product N-carbamyl-beta-alanine
pdb|2FVM|C Chain C, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Reaction
Product N-carbamyl-beta-alanine
pdb|2FVM|D Chain D, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Reaction
Product N-carbamyl-beta-alanine
Length = 559
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 61/276 (22%), Positives = 106/276 (38%), Gaps = 54/276 (19%)
Query: 145 VIDKLVEQGITVSLGHSSADINIAE-EAVRHGASLITHLFNAMLPFHHRDPGIIGLLSSD 203
+I+ L EQG+T + H + +I E EA +L T + +L H P ++
Sbjct: 208 MIEALEEQGLTDAYYHGVSRPSIVEGEATNRAITLATTMDTPILFVHVSSPQAAEVIKQA 267
Query: 204 NIDSSKVY------YGIIAD--------------GVHTHPSALRIANSTHPEGHSSADIH 243
KVY Y +++D GV S++ + T+P+ +
Sbjct: 268 QTKGLKVYAETCPQYALLSDAITRCHHHGEVESYGVGIDLSSISESPFTNPDDRFIGSKY 327
Query: 244 IAEEAVRHGASLITHLFNAMLPFHHRDPGIIGLLSSDNIDSSKVYYGIIADGVHTHPSAL 303
I +R + + ++ M + G ++ SD+ S YY + + A
Sbjct: 328 ICSPPIRPEGTQKS-IWKGM------NNGTFTIVGSDHC--SYNYYEKTSTA--SKHRAF 376
Query: 304 RIANSTHPEGSITPFNGCVQFFMRSTRCSLWFDLGNCNNGGSITPFNGCVQFFMRSTRCS 363
N+ + E P NG TR L +D G ++R S
Sbjct: 377 DPENNKNGEFRYIP-NGLPGV---CTRMPLLYDYG-----------------YLRGNLTS 415
Query: 364 LVHALEVASLHPAKALGLEQHKGTLDFG-ADADFVI 398
++ +E+ +PAK G+ KG++ G +DAD VI
Sbjct: 416 MMKLVEIQCTNPAKVYGMYPQKGSILPGVSDADLVI 451
>pdb|4EQW|A Chain A, Crystal Structure Of The Y361f, Y419f Mutant Of
Staphylococcus Aureus Coadr
pdb|4EQW|B Chain B, Crystal Structure Of The Y361f, Y419f Mutant Of
Staphylococcus Aureus Coadr
Length = 437
Score = 32.0 bits (71), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 49/94 (52%), Gaps = 6/94 (6%)
Query: 142 SMEVIDKLVEQGITVSLGHSSADINIAEEAVRHGASLITHLFNAMLPFHHRDPGIIGLLS 201
S+EV++ L E+G+ +L H S IN +A ++ L +P+ + I ++
Sbjct: 159 SLEVLENLYERGLHPTLIHRSDKINKLMDA-DMNQPILDELDKREIPYRLNEE--INAIN 215
Query: 202 SDNI--DSSKV-YYGIIADGVHTHPSALRIANST 232
+ I S KV +Y +I +GV THP++ I +S
Sbjct: 216 GNEITFKSGKVEHYDMIIEGVGTHPNSKFIESSN 249
>pdb|1GKP|A Chain A, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group C2221
pdb|1GKP|B Chain B, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group C2221
pdb|1GKP|C Chain C, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group C2221
pdb|1GKP|D Chain D, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group C2221
pdb|1GKP|E Chain E, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group C2221
pdb|1GKP|F Chain F, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group C2221
pdb|1GKQ|A Chain A, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group P212121
pdb|1GKQ|B Chain B, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group P212121
pdb|1GKQ|C Chain C, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group P212121
pdb|1GKQ|D Chain D, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group P212121
Length = 458
Score = 32.0 bits (71), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 22/40 (55%)
Query: 361 RCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILD 400
R + ++ AS AK GL KGT+ G+DAD V+ D
Sbjct: 356 RLDIHRFVDAASTKAAKLFGLFPRKGTIAVGSDADLVVYD 395
>pdb|4EQS|A Chain A, Crystal Structure Of The Y419f Mutant Of Staphylococcus
Aureus Coadr
pdb|4EQS|B Chain B, Crystal Structure Of The Y419f Mutant Of Staphylococcus
Aureus Coadr
Length = 437
Score = 32.0 bits (71), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 49/94 (52%), Gaps = 6/94 (6%)
Query: 142 SMEVIDKLVEQGITVSLGHSSADINIAEEAVRHGASLITHLFNAMLPFHHRDPGIIGLLS 201
S+EV++ L E+G+ +L H S IN +A ++ L +P+ + I ++
Sbjct: 159 SLEVLENLYERGLHPTLIHRSDKINKLMDA-DMNQPILDELDKREIPYRLNEE--INAIN 215
Query: 202 SDNI--DSSKV-YYGIIADGVHTHPSALRIANST 232
+ I S KV +Y +I +GV THP++ I +S
Sbjct: 216 GNEITFKSGKVEHYDMIIEGVGTHPNSKFIESSN 249
>pdb|4EQR|A Chain A, Crystal Structure Of The Y361f Mutant Of Staphylococcus
Aureus Coadr
pdb|4EQR|B Chain B, Crystal Structure Of The Y361f Mutant Of Staphylococcus
Aureus Coadr
Length = 437
Score = 32.0 bits (71), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 49/94 (52%), Gaps = 6/94 (6%)
Query: 142 SMEVIDKLVEQGITVSLGHSSADINIAEEAVRHGASLITHLFNAMLPFHHRDPGIIGLLS 201
S+EV++ L E+G+ +L H S IN +A ++ L +P+ + I ++
Sbjct: 159 SLEVLENLYERGLHPTLIHRSDKINKLMDA-DMNQPILDELDKREIPYRLNEE--INAIN 215
Query: 202 SDNI--DSSKV-YYGIIADGVHTHPSALRIANST 232
+ I S KV +Y +I +GV THP++ I +S
Sbjct: 216 GNEITFKSGKVEHYDMIIEGVGTHPNSKFIESSN 249
>pdb|4EM3|A Chain A, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Mevs-Coa
pdb|4EM3|B Chain B, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Mevs-Coa
pdb|4EM4|A Chain A, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Pethyl-Vs-Coa
pdb|4EM4|B Chain B, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Pethyl-Vs-Coa
Length = 437
Score = 32.0 bits (71), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 49/94 (52%), Gaps = 6/94 (6%)
Query: 142 SMEVIDKLVEQGITVSLGHSSADINIAEEAVRHGASLITHLFNAMLPFHHRDPGIIGLLS 201
S+EV++ L E+G+ +L H S IN +A ++ L +P+ + I ++
Sbjct: 159 SLEVLENLYERGLHPTLIHRSDKINKLMDA-DMNQPILDELDKREIPYRLNEE--INAIN 215
Query: 202 SDNI--DSSKV-YYGIIADGVHTHPSALRIANST 232
+ I S KV +Y +I +GV THP++ I +S
Sbjct: 216 GNEITFKSGKVEHYDMIIEGVGTHPNSKFIESSN 249
>pdb|1YQZ|A Chain A, Structure Of Coenzyme A-Disulfide Reductase From
Staphylococcus Aureus Refined At 1.54 Angstrom
Resolution
pdb|1YQZ|B Chain B, Structure Of Coenzyme A-Disulfide Reductase From
Staphylococcus Aureus Refined At 1.54 Angstrom
Resolution
Length = 438
Score = 31.6 bits (70), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 49/94 (52%), Gaps = 6/94 (6%)
Query: 142 SMEVIDKLVEQGITVSLGHSSADINIAEEAVRHGASLITHLFNAMLPFHHRDPGIIGLLS 201
S+EV++ L E+G+ +L H S IN +A ++ L +P+ + I ++
Sbjct: 160 SLEVLENLYERGLHPTLIHRSDKINKLMDA-DMNQPILDELDKREIPYRLNEE--INAIN 216
Query: 202 SDNI--DSSKV-YYGIIADGVHTHPSALRIANST 232
+ I S KV +Y +I +GV THP++ I +S
Sbjct: 217 GNEITFKSGKVEHYDMIIEGVGTHPNSKFIESSN 250
>pdb|4EMW|A Chain A, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Etvc-Coa
pdb|4EMW|B Chain B, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Etvc-Coa
Length = 436
Score = 31.6 bits (70), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 49/94 (52%), Gaps = 6/94 (6%)
Query: 142 SMEVIDKLVEQGITVSLGHSSADINIAEEAVRHGASLITHLFNAMLPFHHRDPGIIGLLS 201
S+EV++ L E+G+ +L H S IN +A ++ L +P+ + I ++
Sbjct: 159 SLEVLENLYERGLHPTLIHRSDKINKLMDA-DMNQPILDELDKREIPYRLNEE--INAIN 215
Query: 202 SDNI--DSSKV-YYGIIADGVHTHPSALRIANST 232
+ I S KV +Y +I +GV THP++ I +S
Sbjct: 216 GNEITFKSGKVEHYDMIIEGVGTHPNSKFIESSN 249
>pdb|4EQX|A Chain A, Crystal Structure Of The C43s Mutant Of Staphylococcus
Aureus Coadr
pdb|4EQX|B Chain B, Crystal Structure Of The C43s Mutant Of Staphylococcus
Aureus Coadr
Length = 437
Score = 31.6 bits (70), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 49/94 (52%), Gaps = 6/94 (6%)
Query: 142 SMEVIDKLVEQGITVSLGHSSADINIAEEAVRHGASLITHLFNAMLPFHHRDPGIIGLLS 201
S+EV++ L E+G+ +L H S IN +A ++ L +P+ + I ++
Sbjct: 159 SLEVLENLYERGLHPTLIHRSDKINKLMDA-DMNQPILDELDKREIPYRLNEE--INAIN 215
Query: 202 SDNI--DSSKV-YYGIIADGVHTHPSALRIANST 232
+ I S KV +Y +I +GV THP++ I +S
Sbjct: 216 GNEITFKSGKVEHYDMIIEGVGTHPNSKFIESSN 249
>pdb|3LCR|A Chain A, Thioesterase From Tautomycetin Biosynthhetic Pathway
pdb|3LCR|B Chain B, Thioesterase From Tautomycetin Biosynthhetic Pathway
Length = 319
Score = 31.6 bits (70), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 7/54 (12%)
Query: 44 VARGILAHGVTSFCPTLVTSEPQVYKKVLSRL---RK----TPGGKHGATVLGA 90
+ RG L + CPT++T+ PQVY ++ L R+ P G HG L A
Sbjct: 75 LGRGQLGPQLILVCPTVMTTGPQVYSRLAEELDAGRRVSALVPPGFHGGQALPA 128
>pdb|2DIK|A Chain A, R337a Mutant Of Pyruvate Phosphate Dikinase
Length = 873
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 25/48 (52%)
Query: 281 NIDSSKVYYGIIADGVHTHPSALRIANSTHPEGSITPFNGCVQFFMRS 328
I+ K+Y+ A+G T P+AL+IA EG IT V+ +S
Sbjct: 324 TIEEGKLYFLQTANGKRTAPAALQIACDLVDEGMITEEEAVVRIEAKS 371
>pdb|4AOY|A Chain A, Open Ctidh. The Complex Structures Of Isocitrate
Dehydrogenase From Clostridium Thermocellum And
Desulfotalea Psychrophila, Support A New Active Site
Locking Mechanism
pdb|4AOY|B Chain B, Open Ctidh. The Complex Structures Of Isocitrate
Dehydrogenase From Clostridium Thermocellum And
Desulfotalea Psychrophila, Support A New Active Site
Locking Mechanism
pdb|4AOY|C Chain C, Open Ctidh. The Complex Structures Of Isocitrate
Dehydrogenase From Clostridium Thermocellum And
Desulfotalea Psychrophila, Support A New Active Site
Locking Mechanism
pdb|4AOY|D Chain D, Open Ctidh. The Complex Structures Of Isocitrate
Dehydrogenase From Clostridium Thermocellum And
Desulfotalea Psychrophila, Support A New Active Site
Locking Mechanism
pdb|4AOU|A Chain A, Ctidh Bound To Nadp. The Complex Structures Of Isocitrate
Dehydrogenase From Clostridium Thermocellum And
Desulfotalea Psychrophila, Support A New Active Site
Locking Mechanism
Length = 402
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 42/98 (42%), Gaps = 14/98 (14%)
Query: 35 DSVDKNVSI-VARGILAHGVTSFCPTLVTSEPQVYKKVLSRLRKTPGGKHGATVLGAHVE 93
D + V+I AR I +GV C T+ + +V + L ++ K+P G A + G
Sbjct: 50 DKTEDQVTIDAARAIQKYGVGVKCATITPNAQRVEEYNLKKMWKSPNGTIRAILDGTVFR 109
Query: 94 GPFISPDKKGAHSLSKIVTFDKGFDS----VREVYGNL 127
P + ++ I F KG+ R YG++
Sbjct: 110 APIV---------VNSIKPFVKGWKKPISIARHAYGDV 138
>pdb|2BB0|A Chain A, Structure Of Imidazolonepropionase From Bacillus Subtilis
pdb|2BB0|B Chain B, Structure Of Imidazolonepropionase From Bacillus Subtilis
pdb|2G3F|A Chain A, Crystal Structure Of Imidazolonepropionase Complexed With
Imidazole-4- Acetic Acid Sodium Salt, A Substrate
Homologue
pdb|2G3F|B Chain B, Crystal Structure Of Imidazolonepropionase Complexed With
Imidazole-4- Acetic Acid Sodium Salt, A Substrate
Homologue
Length = 421
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 2 ADFRFDCGGKLIAPGFIDIQINGGFGVDFSHDIDSVDKNVSIVARGILAHG---VTSFCP 58
AD DC G+L+ PG +D + FG +++ + +S + ILA G +++
Sbjct: 61 ADEIIDCSGRLVTPGLVDPHTHLVFGGSREKEMNLKLQGISYL--DILAQGGGILSTVKD 118
Query: 59 TLVTSEPQVYKKVLSRLRK 77
T SE ++ +K L++
Sbjct: 119 TRAASEEELLQKAHFHLQR 137
>pdb|3US8|A Chain A, Crystal Structure Of An Isocitrate Dehydrogenase From
Sinorhizobium Meliloti 1021
pdb|3US8|B Chain B, Crystal Structure Of An Isocitrate Dehydrogenase From
Sinorhizobium Meliloti 1021
Length = 427
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 6/73 (8%)
Query: 11 KLIAPGFIDIQING-GFGVDFSHDIDSVDKNVSI-VARGILAHGVTSFCPTLVTSEPQVY 68
KLI P ++D+ + GV+ + D+ D V+I A I HGV C T+ E +V
Sbjct: 52 KLIHP-YLDLDLEYYDLGVE---NRDATDDQVTIDAANAIKKHGVGVKCATITPDEGRVE 107
Query: 69 KKVLSRLRKTPGG 81
+ L + K+P G
Sbjct: 108 EFKLKKXWKSPNG 120
>pdb|3DC8|A Chain A, Crystal Structure Of Dihydropyrimidinase From
Sinorhizobium Meliloti
pdb|3DC8|B Chain B, Crystal Structure Of Dihydropyrimidinase From
Sinorhizobium Meliloti
Length = 490
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 361 RCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILD 400
R ++ + V S + AK L + KG + GADAD V+ D
Sbjct: 355 RITMNEFVAVTSTNIAKILNIYPKKGAILVGADADLVVWD 394
>pdb|2GSE|A Chain A, Crystal Structure Of Human Dihydropyrimidinease-Like 2
pdb|2GSE|B Chain B, Crystal Structure Of Human Dihydropyrimidinease-Like 2
pdb|2GSE|C Chain C, Crystal Structure Of Human Dihydropyrimidinease-Like 2
pdb|2GSE|D Chain D, Crystal Structure Of Human Dihydropyrimidinease-Like 2
pdb|2VM8|A Chain A, Human Crmp-2 Crystallised In The Presence Of Mg
pdb|2VM8|B Chain B, Human Crmp-2 Crystallised In The Presence Of Mg
pdb|2VM8|C Chain C, Human Crmp-2 Crystallised In The Presence Of Mg
pdb|2VM8|D Chain D, Human Crmp-2 Crystallised In The Presence Of Mg
Length = 501
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 370 VASLHPAKALGLEQHKGTLDFGADADFVILD 400
V S + AK L KG + G+DAD VI D
Sbjct: 394 VTSTNAAKVFNLYPRKGRIAVGSDADLVIWD 424
>pdb|2KPK|A Chain A, Magi-1 Pdz1
pdb|2KPL|A Chain A, Magi-1 Pdz1 E6CT
Length = 129
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 139 LAGSMEVIDKLVEQGITVSLGHSSADINIAEEAVRHGASLITHLFNAM-LPFHHRDP 194
L G ME D +V T LGH+ A + +++ GAS+ L LPF DP
Sbjct: 58 LDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVDLELCRGYPLPFDPDDP 114
>pdb|3SES|A Chain A, Cu-Mediated Dimer Of Maltose-Binding Protein A216hK220H BY
SYNTHETIC Symmetrization
pdb|3SES|C Chain C, Cu-Mediated Dimer Of Maltose-Binding Protein A216hK220H BY
SYNTHETIC Symmetrization
pdb|3SET|A Chain A, Ni-Mediated Dimer Of Maltose-Binding Protein A216hK220H BY
SYNTHETIC Symmetrization (Form I)
pdb|3SET|C Chain C, Ni-Mediated Dimer Of Maltose-Binding Protein A216hK220H BY
SYNTHETIC Symmetrization (Form I)
pdb|3SEU|A Chain A, Zn-Mediated Polymer Of Maltose-Binding Protein A216hK220H
BY Synthetic Symmetrization (Form Iii)
pdb|3SEW|A Chain A, Zn-Mediated Polymer Of Maltose-Binding Protein A216hK220H
BY Synthetic Symmetrization (Form I)
pdb|3SEX|A Chain A, Ni-Mediated Dimer Of Maltose-Binding Protein A216hK220H BY
SYNTHETIC Symmetrization (Form Ii)
pdb|3SEX|C Chain C, Ni-Mediated Dimer Of Maltose-Binding Protein A216hK220H BY
SYNTHETIC Symmetrization (Form Ii)
pdb|3SEY|A Chain A, Zn-Mediated Polymer Of Maltose-Binding Protein A216hK220H
BY Synthetic Symmetrization (Form Ii)
pdb|3SEY|C Chain C, Zn-Mediated Polymer Of Maltose-Binding Protein A216hK220H
BY Synthetic Symmetrization (Form Ii)
pdb|3SEY|E Chain E, Zn-Mediated Polymer Of Maltose-Binding Protein A216hK220H
BY Synthetic Symmetrization (Form Ii)
Length = 372
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 15/55 (27%)
Query: 160 HSSADINIAEEAVRHGASLITHLFNAMLPFHHRDPGIIGLLSSDNIDSSKVYYGI 214
++ D +IAE A HG + +T I G + NID+SKV YG+
Sbjct: 206 NADTDYSIAEHAFNHGETAMT---------------INGPWAWSNIDTSKVNYGV 245
>pdb|1WVT|A Chain A, Crystal Structure Of Uncharacterized Protein St2180 From
Sulfolobus Tokodaii
pdb|1WVT|B Chain B, Crystal Structure Of Uncharacterized Protein St2180 From
Sulfolobus Tokodaii
pdb|1WVT|C Chain C, Crystal Structure Of Uncharacterized Protein St2180 From
Sulfolobus Tokodaii
Length = 172
Score = 28.1 bits (61), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 8/84 (9%)
Query: 108 SKIVTFDKGFDSVREVYGNLSNIAIITLAPELAGSMEVIDKLVEQGITVSLGHSSADINI 167
S+IV D + V G +S +L PEL+ EVI KL ++S + D N
Sbjct: 24 SEIVKALGDLDELNSVLGVVS-----SLYPELS---EVIQKLQNDIFSISSEIAGFDXNF 75
Query: 168 AEEAVRHGASLITHLFNAMLPFHH 191
++E V+ LIT+ + P +
Sbjct: 76 SDEKVKGIEELITNYSKELEPLRN 99
>pdb|1EYE|A Chain A, 1.7 Angstrom Resolution Crystal Structure Of
6-Hydroxymethyl-7,8- Dihydropteroate Synthase (Dhps)
From Mycobacterium Tuberculosis In Complex With
6-Hydroxymethylpterin Monophosphate
Length = 280
Score = 28.1 bits (61), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 7/70 (10%)
Query: 136 APELAGSMEVIDKLVEQGITVSLGHSSADINIAEEAVRHGASLITHLFNAMLPFHHRDPG 195
A E + + V+ +L QGITVS+ AD +A A+++GA ++ + DP
Sbjct: 63 AVETSRVIPVVKELAAQGITVSIDTMRAD--VARAALQNGAQMVNDVSGG-----RADPA 115
Query: 196 IIGLLSSDNI 205
+ LL+ ++
Sbjct: 116 MGPLLAEADV 125
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,441,183
Number of Sequences: 62578
Number of extensions: 572774
Number of successful extensions: 2717
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 2637
Number of HSP's gapped (non-prelim): 67
length of query: 417
length of database: 14,973,337
effective HSP length: 101
effective length of query: 316
effective length of database: 8,652,959
effective search space: 2734335044
effective search space used: 2734335044
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)