BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12256
(417 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9Y303|NAGA_HUMAN Putative N-acetylglucosamine-6-phosphate deacetylase OS=Homo
sapiens GN=AMDHD2 PE=1 SV=2
Length = 409
Score = 345 bits (886), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 195/416 (46%), Positives = 255/416 (61%), Gaps = 68/416 (16%)
Query: 1 MADFRFDCGGKLIAPGFIDIQINGGFGVDFSHDIDSVDKNVSIVARGILAHGVTSFCPTL 60
+AD R DCGG+++APGFID+QINGGFGVDFS + V V++VAR IL+HGVTSFCPTL
Sbjct: 51 VADERRDCGGRILAPGFIDVQINGGFGVDFSQATEDVGSGVALVARRILSHGVTSFCPTL 110
Query: 61 VTSEPQVYKKVLSRLRKTPGGKHGATVLGAHVEGPFISPDKKGAHSLSKIVTFDK-GFDS 119
VTS P+VY KV+ ++ GG HGA VLG H+EGPFIS +K+GAH + + +F+ F
Sbjct: 111 VTSPPEVYHKVVPQIPVKSGGPHGAGVLGLHLEGPFISREKRGAHPEAHLRSFEADAFQD 170
Query: 120 VREVYGNLSNIAIITLAPELAGSMEVIDKLVEQGITVSLGHSSADINIAEEAVRHGASLI 179
+ YG L N+ I+TLAPEL S EVI L +GI VSLGHS AD+ AE+AV GA+ I
Sbjct: 171 LLATYGPLDNVRIVTLAPELGRSHEVIRALTARGICVSLGHSVADLRAAEDAVWSGATFI 230
Query: 180 THLFNAMLPFHHRDPGIIGLLSSDNIDSSK-VYYGIIADGVHTHPSALRIANSTHPEGHS 238
THLFNAMLPFHHRDPGI+GLL+SD + + + ++YG+IADG HT+P+ALRIA+ HP+
Sbjct: 231 THLFNAMLPFHHRDPGIVGLLTSDRLPAGRCIFYGMIADGTHTNPAALRIAHRAHPQ--- 287
Query: 239 SADIHIAEEAVRHGASLITHLFNAMLPFHHRDPGIIGLLSSDNIDSSKVYYGIIADGVHT 298
G L+T A L N + + DG+
Sbjct: 288 -------------GLVLVTDAIPA--------------LGLGNGRHTLGQQEVEVDGLTA 320
Query: 299 HPSALRIANSTHPEGSITPFNGCVQFFMRSTRCSLWFDLGNCNNGGSITPFNGCVQFFMR 358
+ +A + GSI P + CV+ F+++T CS+
Sbjct: 321 Y-----VAGTKTLSGSIAPMDVCVRHFLQATGCSME------------------------ 351
Query: 359 STRCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILDEGLHVYSTWIAGDL 414
ALE ASLHPA+ LGLE+ KGTLDFGADADFV+LD+ LHV +T+I+G+L
Sbjct: 352 -------SALEAASLHPAQLLGLEKSKGTLDFGADADFVVLDDSLHVQATYISGEL 400
>sp|A7MBC0|NAGA_BOVIN Putative N-acetylglucosamine-6-phosphate deacetylase OS=Bos taurus
GN=AMDHD2 PE=2 SV=1
Length = 409
Score = 343 bits (880), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 196/416 (47%), Positives = 254/416 (61%), Gaps = 68/416 (16%)
Query: 1 MADFRFDCGGKLIAPGFIDIQINGGFGVDFSHDIDSVDKNVSIVARGILAHGVTSFCPTL 60
+AD + DCGG ++APGFID+QINGGFGVDFS + V V++VAR IL+HGVTSFCPTL
Sbjct: 51 VADEQRDCGGCILAPGFIDVQINGGFGVDFSQASEDVGSGVALVARRILSHGVTSFCPTL 110
Query: 61 VTSEPQVYKKVLSRLRKTPGGKHGATVLGAHVEGPFISPDKKGAHSLSKIVTFDK-GFDS 119
VTS +VY KVL ++ GG HGA VLG H+EGPFIS +K+GAH + + +F+ F
Sbjct: 111 VTSPLEVYHKVLPQIPVKSGGPHGAGVLGVHLEGPFISREKRGAHPEAHLRSFEADAFQD 170
Query: 120 VREVYGNLSNIAIITLAPELAGSMEVIDKLVEQGITVSLGHSSADINIAEEAVRHGASLI 179
V YG L N+ I+TLAPEL S EVI L GI VSLGHS AD+ AEEAV+ GA+ I
Sbjct: 171 VLATYGGLDNVRIVTLAPELGHSQEVIRALTALGICVSLGHSVADLGTAEEAVQSGATFI 230
Query: 180 THLFNAMLPFHHRDPGIIGLLSSDNIDSSK-VYYGIIADGVHTHPSALRIANSTHPEGHS 238
THLFNAMLPFHHRDPGI+GLL+SD + + + ++YG+IADG+HT+P+ALRIA+ HP+
Sbjct: 231 THLFNAMLPFHHRDPGIVGLLTSDRLPAGRHIFYGMIADGIHTNPAALRIAHRAHPK--- 287
Query: 239 SADIHIAEEAVRHGASLITHLFNAMLPFHHRDPGIIGLLSSDNIDSSKVYYGIIADGVHT 298
G L+T A L N + + DG+
Sbjct: 288 -------------GLVLVTDAVPA--------------LGLGNGRHTLGQQEVEVDGLTA 320
Query: 299 HPSALRIANSTHPEGSITPFNGCVQFFMRSTRCSLWFDLGNCNNGGSITPFNGCVQFFMR 358
+ +A + GSI P + CV+ F+++T CS+
Sbjct: 321 Y-----VAGTNTLSGSIAPMDTCVRHFLQATGCSVE------------------------ 351
Query: 359 STRCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILDEGLHVYSTWIAGDL 414
ALE ASLHPA+ LGLE+ KGTLDFGADADFV+LD+ LHV +T+I+G+L
Sbjct: 352 -------SALEAASLHPAQLLGLEKRKGTLDFGADADFVVLDDSLHVRATYISGEL 400
>sp|Q8JZV7|NAGA_MOUSE Putative N-acetylglucosamine-6-phosphate deacetylase OS=Mus
musculus GN=Amdhd2 PE=2 SV=1
Length = 409
Score = 342 bits (877), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 197/416 (47%), Positives = 256/416 (61%), Gaps = 68/416 (16%)
Query: 1 MADFRFDCGGKLIAPGFIDIQINGGFGVDFSHDIDSVDKNVSIVARGILAHGVTSFCPTL 60
+AD + DCGG+++APGFID+QINGGFGVDFS + V V++VAR +L+HGVTSFCPTL
Sbjct: 51 VADEQRDCGGRILAPGFIDVQINGGFGVDFSKATEDVGSGVALVARRLLSHGVTSFCPTL 110
Query: 61 VTSEPQVYKKVLSRLRKTPGGKHGATVLGAHVEGPFISPDKKGAHSLSKIVTFD-KGFDS 119
VTS P+VY KVL ++ GG HGA VLG H+EGPFIS +K+GAH + + +F+ F
Sbjct: 111 VTSPPEVYHKVLPQIPVKSGGPHGAGVLGVHLEGPFISREKRGAHPEAYLRSFEANAFHD 170
Query: 120 VREVYGNLSNIAIITLAPELAGSMEVIDKLVEQGITVSLGHSSADINIAEEAVRHGASLI 179
V YG L N+ I+TLAPEL S EVI L QGI VSLGHS AD+ AE AV+ GA+ I
Sbjct: 171 VLATYGPLDNVCIVTLAPELDRSHEVIQALTAQGIRVSLGHSVADLRAAEVAVQSGATFI 230
Query: 180 THLFNAMLPFHHRDPGIIGLLSSDNIDSSK-VYYGIIADGVHTHPSALRIANSTHPEGHS 238
THLFNAMLPFHHRDPGI+GLL+SD + ++YG+IADG+HT+P+ALRIA+ HP+
Sbjct: 231 THLFNAMLPFHHRDPGIVGLLTSDQLPPGHCIFYGMIADGIHTNPAALRIAHRAHPQ--- 287
Query: 239 SADIHIAEEAVRHGASLITHLFNAMLPFHHRDPGIIGLLSSDNIDSSKVYYGIIADGVHT 298
G L+T A+ + R L ++ G+IA
Sbjct: 288 -------------GLVLVTDAVPALGLGNGRH-----TLGQQEVEVD----GLIA----- 320
Query: 299 HPSALRIANSTHPEGSITPFNGCVQFFMRSTRCSLWFDLGNCNNGGSITPFNGCVQFFMR 358
IA + GSI P + CV+ F+++T CS+
Sbjct: 321 -----YIAGTKTLGGSIAPMDVCVRHFLQATGCSVE------------------------ 351
Query: 359 STRCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILDEGLHVYSTWIAGDL 414
ALE ASLHPA+ LGLE+ KG+LDFGADADFV+LD+ LHV +T+I+G+L
Sbjct: 352 -------SALEAASLHPAQMLGLEKTKGSLDFGADADFVVLDDTLHVQATYISGEL 400
>sp|Q9VR81|NAGA_DROME Putative N-acetylglucosamine-6-phosphate deacetylase OS=Drosophila
melanogaster GN=CG17065 PE=2 SV=1
Length = 417
Score = 341 bits (875), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 193/413 (46%), Positives = 250/413 (60%), Gaps = 71/413 (17%)
Query: 2 ADFRFDCGGKLIAPGFIDIQINGGFGVDFSHDIDSVDKNVSIVARGILAHGVTSFCPTLV 61
A R DCGG +IAPG+ID+QINGG+GVDFS+D +++++ V+ VARG++ GVTSFCPTLV
Sbjct: 66 AHCRIDCGGAIIAPGYIDLQINGGYGVDFSYDTETIEEGVATVARGLVKSGVTSFCPTLV 125
Query: 62 TSEPQVYKKVLSRL-RKTPGGKHGATVLGAHVEGPFISPDKKGAHSLSKIVTFDKGFDSV 120
TS Y +L R+ + P GA +LG H EGPFI+P KKGAH I T DKG ++
Sbjct: 126 TSPSDSYHTILPRIPAEVP---KGAGILGIHAEGPFINPQKKGAHPEHCIQTIDKGLSTL 182
Query: 121 REVYGNLSNIAIITLAPELAGSMEVIDKLVEQGITVSLGHSSADINIAEEAVRHGASLIT 180
+E YG+L I IITLAPE EVI +LVE+GITV+LGHS A ++ E AV+ GA+LIT
Sbjct: 183 KETYGSLERIKIITLAPEKVTDPEVIGQLVERGITVALGHSMASLSDGERAVQQGATLIT 242
Query: 181 HLFNAMLPFHHRDPGIIGLLSSDNIDSSK-VYYGIIADGVHTHPSALRIANSTHPEGHSS 239
HLFNAMLPFHHRDPG++GLL+SD + + VY+GII+DGVHTHP+ALRIA THP+G
Sbjct: 243 HLFNAMLPFHHRDPGLVGLLASDAVPHGRTVYFGIISDGVHTHPAALRIAYRTHPQGLIL 302
Query: 240 ADIHIAEEAVRHGASLITHLFNAMLPFHHRDPGIIGLLSSDNIDSSKVYYGIIADGVHTH 299
I+ + G HH IG L + K +
Sbjct: 303 VTDAISALGLEEGV-------------HH-----IGQLPL-QVKQGKAF----------- 332
Query: 300 PSALRIANSTHPEGSITPFNGCVQFFMRSTRCSLWFDLGNCNNGGSITPFNGCVQFFMRS 359
IA + GSI P + CV+ F ++
Sbjct: 333 -----IAGTETLCGSIAPMDECVRIF-------------------------------QKA 356
Query: 360 TRCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILDEGLHVYSTWIAG 412
T CS+V+A+E A+LHPA+ L +E+ KGTLDFG+DADFV+LD+ L V STWIAG
Sbjct: 357 TDCSVVYAIEAATLHPAQCLKIEKQKGTLDFGSDADFVLLDDQLRVLSTWIAG 409
>sp|Q5BJY6|NAGA_RAT Putative N-acetylglucosamine-6-phosphate deacetylase OS=Rattus
norvegicus GN=Amdhd2 PE=3 SV=2
Length = 409
Score = 339 bits (869), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 195/416 (46%), Positives = 255/416 (61%), Gaps = 68/416 (16%)
Query: 1 MADFRFDCGGKLIAPGFIDIQINGGFGVDFSHDIDSVDKNVSIVARGILAHGVTSFCPTL 60
+AD + DCGG+++APGFID+QINGGFGVDFS + V V++VAR +L+HGVTSFCPTL
Sbjct: 51 VADEQRDCGGRILAPGFIDVQINGGFGVDFSRATEDVGSGVALVARRLLSHGVTSFCPTL 110
Query: 61 VTSEPQVYKKVLSRLRKTPGGKHGATVLGAHVEGPFISPDKKGAHSLSKIVTFD-KGFDS 119
VTS P+VY KVL ++ GG HGA VLG H+EGPFIS +K+GAH + + +F F
Sbjct: 111 VTSPPEVYHKVLPQIPVKSGGPHGAGVLGVHLEGPFISREKRGAHPEAYLRSFGANAFHD 170
Query: 120 VREVYGNLSNIAIITLAPELAGSMEVIDKLVEQGITVSLGHSSADINIAEEAVRHGASLI 179
V YG L N+ I+TLAPEL S EVI L +GI VSLGHS AD+ AE AV+ GA+ I
Sbjct: 171 VLATYGPLDNVCIVTLAPELDRSHEVIQALTAKGIRVSLGHSVADLRAAEVAVQSGATFI 230
Query: 180 THLFNAMLPFHHRDPGIIGLLSSDNIDSSK-VYYGIIADGVHTHPSALRIANSTHPEGHS 238
THLFNAMLPFHHRDPGI+GLL+SD + ++YG+IADG+HT+P+ALRIA+ HP+
Sbjct: 231 THLFNAMLPFHHRDPGIVGLLTSDQLPPGHCIFYGMIADGIHTNPAALRIAHRAHPQ--- 287
Query: 239 SADIHIAEEAVRHGASLITHLFNAMLPFHHRDPGIIGLLSSDNIDSSKVYYGIIADGVHT 298
G L+T A+ + R L ++ G+IA
Sbjct: 288 -------------GLVLVTDAVPALGLGNGRH-----TLGQQEVEVD----GLIA----- 320
Query: 299 HPSALRIANSTHPEGSITPFNGCVQFFMRSTRCSLWFDLGNCNNGGSITPFNGCVQFFMR 358
IA + GSI P + C++ F+++T CS+
Sbjct: 321 -----YIAGTKTLSGSIAPMDVCIRHFLQATGCSVE------------------------ 351
Query: 359 STRCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILDEGLHVYSTWIAGDL 414
ALE ASLHPA+ LGLE+ KG+LDFGADADFV+LD+ LHV +T+I+G+L
Sbjct: 352 -------SALEAASLHPAQLLGLEKTKGSLDFGADADFVVLDDTLHVQATYISGEL 400
>sp|Q6P0U0|NAGA_DANRE Putative N-acetylglucosamine-6-phosphate deacetylase OS=Danio rerio
GN=amdhd2 PE=2 SV=1
Length = 404
Score = 333 bits (854), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 194/415 (46%), Positives = 246/415 (59%), Gaps = 70/415 (16%)
Query: 2 ADFRFDCGGKLIAPGFIDIQINGGFGVDFSHDIDSVDKNVSIVARGILAHGVTSFCPTLV 61
AD R DC K+IAPGFID+Q+NGG+G+DFS + V++VA+ IL HGVTSFCPTLV
Sbjct: 52 ADHRVDCENKIIAPGFIDVQLNGGYGIDFSQASSDIRGGVALVAKKILEHGVTSFCPTLV 111
Query: 62 TSEPQVYKKVLSRLRKTPGGKHGATVLGAHVEGPFISPDKKGAHSLSKIVTFDK-GFDSV 120
TS P +Y KV+ LR GG GA VLG H+EGPFIS +K+GAH + TF G +
Sbjct: 112 TSPPHIYHKVIPELRVQDGGPEGAGVLGIHLEGPFISEEKRGAHPPKFLRTFQSGGVADL 171
Query: 121 REVYGNLSNIAIITLAPELAGSMEVIDKLVEQGITVSLGHSSADINIAEEAVRHGASLIT 180
E YG L N+A++TLAPEL S I +L +GITVS+GHS AD++ AEEAV++GA+ IT
Sbjct: 172 METYGQLENVAMVTLAPELTNSAAAIHELSSRGITVSVGHSMADLSQAEEAVQNGATFIT 231
Query: 181 HLFNAMLPFHHRDPGIIGLLSSDNIDSSK-VYYGIIADGVHTHPSALRIANSTHPEGHSS 239
HLFNAMLPFHHRDPGI+GLL+SD I + VYYG+IADG+HTHP+ALRIA+ HP
Sbjct: 232 HLFNAMLPFHHRDPGIVGLLTSDRIPPGRTVYYGMIADGIHTHPAALRIAHRAHPA---- 287
Query: 240 ADIHIAEEAVRHGASLITHLFNAM-LPFHHRDPGIIGLLSSDNIDSSKVYYGIIADGVHT 298
G L+T AM LP PG L ID G+H
Sbjct: 288 ------------GLVLVTDAVTAMGLP-----PG-RHTLGQQQID---------IQGLHA 320
Query: 299 HPSALRIANSTHPEGSITPFNGCVQFFMRSTRCSLWFDLGNCNNGGSITPFNGCVQFFMR 358
+ +A +T GSI + CV+ F ++ C++
Sbjct: 321 Y-----VAGTTTLSGSIATMDMCVRHFREASGCTVEA----------------------- 352
Query: 359 STRCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILDEGLHVYSTWIAGD 413
ALE ASLHPA+ LG+ KGTL+FGADADF++LD+ L V T+IAG
Sbjct: 353 --------ALEAASLHPAQLLGISHRKGTLEFGADADFIVLDDMLTVRETYIAGQ 399
>sp|P34480|NAGA_CAEEL Putative N-acetylglucosamine-6-phosphate deacetylase
OS=Caenorhabditis elegans GN=F59B2.3 PE=1 SV=1
Length = 418
Score = 265 bits (676), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 160/421 (38%), Positives = 226/421 (53%), Gaps = 78/421 (18%)
Query: 1 MADFRFDCGGKLIAPGFIDIQINGGFGVDFS---HDIDSVDKNVSIVARGILAHGVTSFC 57
MAD + DC G +++PGFID+Q+NGGFG+DFS D + +++VA+ +LAHGVTSF
Sbjct: 59 MADVQIDCEGLILSPGFIDLQLNGGFGIDFSTYNSDDKEYQEGLALVAKQLLAHGVTSFS 118
Query: 58 PTLVTSEPQVYKKVLSRLRKTPGGKHGATVLGAHVEGPFISPDKKGAHSLSKIVTF--DK 115
PT++TS P+ Y K+L L+ + GA LGAH+EGPFIS DK+G H ++T
Sbjct: 119 PTVITSSPETYHKILPLLKPSNASSEGAGNLGAHLEGPFISADKRGCHPEQLVITSLSPN 178
Query: 116 GFDSVREVYGNLSNIAIITLAPELAGSMEVIDKLVEQGITVSLGHSSADINIAEEAVRHG 175
+ + VYG+ NIAI+T+APEL G+ E I+ V G TVS+GHSSA + E AV G
Sbjct: 179 PVEIIEHVYGSTENIAIVTMAPELEGAQEAIEYFVSTGTTVSVGHSSAKLGPGEMAVLSG 238
Query: 176 ASLITHLFNAMLPFHHRDPGIIGLLSSDNIDSS-KVYYGIIADGVHTHPSALRIANSTHP 234
A +ITHLFNAM +HHRDPG+IGLL+S + +YYGII+DG+HTH SALRIA
Sbjct: 239 AKMITHLFNAMQSYHHRDPGLIGLLTSSKLTPDHPLYYGIISDGIHTHDSALRIA----- 293
Query: 235 EGHSSADIHIAEEAVRHGASLITHLFNAMLPFHHRDPGIIGLLSSDNIDSSKVYYGIIAD 294
+H G++ L +D I + + G+
Sbjct: 294 -------------------------------YHTNSAGLV--LVTDAIAALGMSDGVHKL 320
Query: 295 GVHT-HPSAL--RIANSTHPEGSITPFNGCVQFFMRSTRCSLWFDLGNCNNGGSITPFNG 351
G T H L ++ + GS+ C++ M++T C + F
Sbjct: 321 GTQTIHVKGLEAKLDGTNTTAGSVASMPYCIRHLMKATGCPIEF---------------- 364
Query: 352 CVQFFMRSTRCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILDEGLHVYSTWIA 411
AL+ A+ PA LG+ KGTLD G ADFV++D+ + V +T+ +
Sbjct: 365 ---------------ALQSATHKPATLLGVSDEKGTLDVGRLADFVLIDKNVTVKATFCS 409
Query: 412 G 412
G
Sbjct: 410 G 410
>sp|O32445|NAGA_VIBCH N-acetylglucosamine-6-phosphate deacetylase OS=Vibrio cholerae
serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
GN=nagA PE=1 SV=2
Length = 378
Score = 140 bits (352), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 87/229 (37%), Positives = 132/229 (57%), Gaps = 10/229 (4%)
Query: 7 DCGGKLIAPGFIDIQINGGFGVDFSHDIDSVDKNVSIVARGILAHGVTSFCPTLVTSEPQ 66
D G ++PGFID+Q+NG GV F+ +I + + + + + L G TSF PTL+TS +
Sbjct: 45 DLNGANLSPGFIDLQLNGCGGVMFNDEITA--ETIDTMHKANLKSGCTSFLPTLITSSDE 102
Query: 67 VYKKVLSRLRKTPGGKHGATVLGAHVEGPFISPDKKGAHSLSKIVTFDKGFDSVREVYGN 126
++ ++ R+ K+ LG H+EGP+++ KKG HS+ I D + + N
Sbjct: 103 NMRQAIAAAREYQA-KYPNQSLGLHLEGPYLNVMKKGIHSVDFIRPSDDTM--IDTICAN 159
Query: 127 LSNIAIITLAPELAGSMEVIDKLVEQGITVSLGHSSADINIAEEAVRHGASLITHLFNAM 186
IA +TLAPE E I+KLV+ GI VS+GH++A + A ++ G + THLFNAM
Sbjct: 160 SDVIAKVTLAPE-NNKPEHIEKLVKAGIVVSIGHTNATYSEARKSFESGITFATHLFNAM 218
Query: 187 LPFHHRDPGIIGLLSSDNIDSSKVYYGIIADGVHTHPSALRIANSTHPE 235
P R+PG++G + D+ +VY GIIADG H + +RIA+ E
Sbjct: 219 TPMVGREPGVVGAI----YDTPEVYAGIIADGFHVDYANIRIAHKIKGE 263
Score = 89.0 bits (219), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 96/191 (50%), Gaps = 16/191 (8%)
Query: 236 GHSSADIHIAEEAVRHGASLITHLFNAMLPFHHRDPGIIGLLSSDNIDSSKVYYGIIADG 295
GH++A A ++ G + THLFNAM P R+PG++G + D+ +VY GIIADG
Sbjct: 191 GHTNATYSEARKSFESGITFATHLFNAMTPMVGREPGVVGAI----YDTPEVYAGIIADG 246
Query: 296 VHTHPSALRIANSTHPEG------SITPFNGCVQFFMRSTRCSLWFDLGNCNN-----GG 344
H + +RIA+ E + P + +F+ + +++ G C + GG
Sbjct: 247 FHVDYANIRIAHKIKGEKLVLVTDATAPAGAEMDYFIFVGK-KVYYRDGKCVDENGTLGG 305
Query: 345 SITPFNGCVQFFMRSTRCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILDEGLH 404
S VQ + +L AL +A+L+PAKA+G+++ G + G A+ + D +
Sbjct: 306 SALTMIEAVQNTVEHVGIALDEALRMATLYPAKAIGVDEKLGRIKKGMIANLTVFDRDFN 365
Query: 405 VYSTWIAGDLK 415
V +T + G +
Sbjct: 366 VKATVVNGQYE 376
>sp|O34450|NAGA_BACSU N-acetylglucosamine-6-phosphate deacetylase OS=Bacillus subtilis
(strain 168) GN=nagA PE=1 SV=1
Length = 396
Score = 139 bits (349), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 120/409 (29%), Positives = 182/409 (44%), Gaps = 82/409 (20%)
Query: 12 LIAPGFIDIQINGGFGVDFSHDIDSVDKNVSIVARGILAHGVTSFCPTLVTSEPQVYKKV 71
++ PG IDI I+GG+G D +D+ + I++ + G TSF T +T E +
Sbjct: 54 VLLPGMIDIHIHGGYGAD---TMDASFSTLDIMSSRLPEEGTTSFLATTITQEHGNISQA 110
Query: 72 LSRLRKTPGGKH----GATVLGAHVEGPFISPDKKGAHSLSKIVTFD-KGFDSVREVYGN 126
L R+ + GA +LG H+EGPF+SP + GA I D + F ++ G
Sbjct: 111 LVNAREWKAAEESSLLGAELLGIHLEGPFVSPKRAGAQPKEWIRPSDVELFKKWQQEAGG 170
Query: 127 LSNIAIITLAPELAGSMEVIDKLVEQGITVSLGHSSADINIAEEAVRHGASLITHLFNAM 186
L I I+TLAPE E+I L ++ I S+GH+ AD + +A + GAS +THL+NAM
Sbjct: 171 L--IKIVTLAPEEDQHFELIRHLKDESIIASMGHTDADSALLSDAAKAGASHMTHLYNAM 228
Query: 187 LPFHHRDPGIIGL-LSSDNIDSSKVYYGIIADGVHTHPSALRIANSTHPEGHSSADIHIA 245
PFHHR+PG+IG L+ D + +IADG+H+HP A ++A
Sbjct: 229 SPFHHREPGVIGTALAHDGFVTE-----LIADGIHSHPLAAKLA---------------- 267
Query: 246 EEAVRHGASLITHLFNAMLPFHHRDPGIIGLLSSDNIDSSKVYYGIIADGVHTHPSALRI 305
+ G+S + + ++M R G+ D + Y V +
Sbjct: 268 --FLAKGSSKLILITDSM-----RAKGL-----KDGV------YEFGGQSVTVRGRTALL 309
Query: 306 ANSTHPEGSITPFNGCVQFFMRSTRCSLWFDLGNCNNGGSITPFNGCVQFFMRSTRCSLV 365
++ T GSI N + T CS W D+ N
Sbjct: 310 SDGTLA-GSILKMNEGARHMREFTNCS-WTDIAN-------------------------- 341
Query: 366 HALEVASLHPAKALGLEQHKGTLDFGADADFVILDEGLHVYSTWIAGDL 414
+ S + AK LG+ KG++ G DAD VI+ V T G++
Sbjct: 342 ----ITSENAAKQLGIFDRKGSVTVGKDADLVIVSSDCEVILTICRGNI 386
>sp|Q84F86|NAGA_LYSSH N-acetylglucosamine-6-phosphate deacetylase OS=Lysinibacillus
sphaericus GN=nagA PE=2 SV=1
Length = 387
Score = 135 bits (341), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 129/417 (30%), Positives = 185/417 (44%), Gaps = 84/417 (20%)
Query: 5 RFDCGGKLIAPGFIDIQINGGFGVDFSHDIDSVDKNVSIVARGILAHGVTSFCPTLVTSE 64
+ + GK + PGFID+ I+G +D +D+ D+ + I + G TSF T +T
Sbjct: 46 QLEGSGKFLLPGFIDMHIHGSAQMD---TMDASDEGLHIHGPITIKEGTTSFLATTMTQS 102
Query: 65 PQVYKKVLSRLRKTPGGKHG-ATVLGAHVEGPFISPDKKGAHSLSKIVTFDKGFDSVREV 123
+ + + K A VLG H+EGPF+S + GA L IV D V +
Sbjct: 103 FDWFDRAQRQCGNNFSPKSDEAEVLGLHIEGPFVSKQRAGAQPLDYIVQPDM---EVIKK 159
Query: 124 YGNLS--NIAIITLAPELAGSMEVIDKLVEQGITVSLGHSSADINIAEEAVRHGASLITH 181
+ LS I ITLAPE M + L E G+ VS+GHS A +EAV+ GAS TH
Sbjct: 160 WQALSGQKIKQITLAPEEPNGMAAVQSLSESGVIVSIGHSDATFEQMQEAVQLGASQGTH 219
Query: 182 LFNAMLPFHHRDPGII-GLLSSDNIDSSKVYYGIIADGVHTHPSALRIANSTHPEGHSSA 240
L+N M PFHHRDPG++ G+L D I + +I D +H H A+ +A A
Sbjct: 220 LYNQMRPFHHRDPGVVGGVLLVDAIKAE-----LIVDFIHMHEGAVEMAYRL-----KGA 269
Query: 241 DIHIAEEAVRHGASLITHLFNAM-LPFHHRDPGIIGLLSSDNIDSSKVYYGIIADGVHTH 299
D G LIT A +P+ D G G L VH
Sbjct: 270 D----------GIILITDAMRAKGMPYGEYDLG--GQL------------------VHVT 299
Query: 300 PSALRIANSTHPEGSITPFNGCVQFFMRSTRCSLWFDLGNCNNGGSITPFNGCVQFFMRS 359
S ++N + GSI + V R+ R +
Sbjct: 300 ESGAHLSNGSLA-GSILTMDQAV----RNMR---------------------------QI 327
Query: 360 TRCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILDEGLHVYSTWIAGDLKL 416
T C+L ++++S + A+ L L +KG L G DAD VI+DE L ++ T AG +++
Sbjct: 328 TNCTLEELVKMSSYNAAQQLKLT-NKGQLTEGYDADAVIVDEHLLLHQTIKAGRIRV 383
>sp|P0AF18|NAGA_ECOLI N-acetylglucosamine-6-phosphate deacetylase OS=Escherichia coli
(strain K12) GN=nagA PE=1 SV=1
Length = 382
Score = 129 bits (325), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 80/221 (36%), Positives = 127/221 (57%), Gaps = 9/221 (4%)
Query: 10 GKLIAPGFIDIQINGGFGVDFSHDIDSVD-KNVSIVARGILAHGVTSFCPTLVTSEPQVY 68
G +++PGFID+Q+NG GV F+ ++V + + I+ + G T++ PTL+T+ ++
Sbjct: 48 GAILSPGFIDVQLNGCGGVQFNDTAEAVSVETLEIMQKANEKSGCTNYLPTLITTSDELM 107
Query: 69 KKVLSRLRKTPGGKHGATVLGAHVEGPFISPDKKGAHSLSKIVTFDKGFDSVREVYGNLS 128
K+ + +R+ KH LG H+EGP+++ KKG H+ + + D V + N
Sbjct: 108 KQGVRVMREYLA-KHPNQALGLHLEGPWLNLVKKGTHNPNFVRKPDAAL--VDFLCENAD 164
Query: 129 NIAIITLAPELAGSMEVIDKLVEQGITVSLGHSSADINIAEEAVRHGASLITHLFNAMLP 188
I +TLAPE+ + EVI KL GI VS GHS+A + A+ R G + THL+NAM
Sbjct: 165 VITKVTLAPEMVPA-EVISKLANAGIVVSAGHSNATLKEAKAGFRAGITFATHLYNAMPY 223
Query: 189 FHHRDPGIIGLLSSDNIDSSKVYYGIIADGVHTHPSALRIA 229
R+PG+ G + +D + +Y GIIADG+H + +R A
Sbjct: 224 ITGREPGLAGAI----LDEADIYCGIIADGLHVDYANIRNA 260
Score = 77.0 bits (188), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 94/197 (47%), Gaps = 24/197 (12%)
Query: 236 GHSSADIHIAEEAVRHGASLITHLFNAMLPFHHRDPGIIGLLSSDNIDSSKVYYGIIADG 295
GHS+A + A+ R G + THL+NAM R+PG+ G + +D + +Y GIIADG
Sbjct: 194 GHSNATLKEAKAGFRAGITFATHLYNAMPYITGREPGLAGAI----LDEADIYCGIIADG 249
Query: 296 VHTHPSALR------------IANSTHPEGSITP---FNGCVQFFMRSTRCSLWFDLGNC 340
+H + +R + ++T P G+ F G ++ R L D
Sbjct: 250 LHVDYANIRNAKRLKGDKLCLVTDATAPAGANIEQFIFAGKTIYY----RNGLCVDENGT 305
Query: 341 NNGGSITPFNGCVQFFMRSTRCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILD 400
+G S+T G V+ + +L L +A+L+PA+A+G+E+ GTL G A+
Sbjct: 306 LSGSSLTMIEG-VRNLVEHCGIALDEVLRMATLYPARAIGVEKRLGTLAAGKVANLTAFT 364
Query: 401 EGLHVYSTWIAGDLKLT 417
+ T + G+ +T
Sbjct: 365 PDFKITKTIVNGNEVVT 381
>sp|P0AF19|NAGA_ECO57 N-acetylglucosamine-6-phosphate deacetylase OS=Escherichia coli
O157:H7 GN=nagA PE=3 SV=1
Length = 382
Score = 129 bits (325), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 80/221 (36%), Positives = 127/221 (57%), Gaps = 9/221 (4%)
Query: 10 GKLIAPGFIDIQINGGFGVDFSHDIDSVD-KNVSIVARGILAHGVTSFCPTLVTSEPQVY 68
G +++PGFID+Q+NG GV F+ ++V + + I+ + G T++ PTL+T+ ++
Sbjct: 48 GAILSPGFIDVQLNGCGGVQFNDTAEAVSVETLEIMQKANEKSGCTNYLPTLITTSDELM 107
Query: 69 KKVLSRLRKTPGGKHGATVLGAHVEGPFISPDKKGAHSLSKIVTFDKGFDSVREVYGNLS 128
K+ + +R+ KH LG H+EGP+++ KKG H+ + + D V + N
Sbjct: 108 KQGVRVMREYLA-KHPNQALGLHLEGPWLNLVKKGTHNPNFVRKPDAAL--VDFLCENAD 164
Query: 129 NIAIITLAPELAGSMEVIDKLVEQGITVSLGHSSADINIAEEAVRHGASLITHLFNAMLP 188
I +TLAPE+ + EVI KL GI VS GHS+A + A+ R G + THL+NAM
Sbjct: 165 VITKVTLAPEMVPA-EVISKLANAGIVVSAGHSNATLKEAKAGFRAGITFATHLYNAMPY 223
Query: 189 FHHRDPGIIGLLSSDNIDSSKVYYGIIADGVHTHPSALRIA 229
R+PG+ G + +D + +Y GIIADG+H + +R A
Sbjct: 224 ITGREPGLAGAI----LDEADIYCGIIADGLHVDYANIRNA 260
Score = 77.0 bits (188), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 94/197 (47%), Gaps = 24/197 (12%)
Query: 236 GHSSADIHIAEEAVRHGASLITHLFNAMLPFHHRDPGIIGLLSSDNIDSSKVYYGIIADG 295
GHS+A + A+ R G + THL+NAM R+PG+ G + +D + +Y GIIADG
Sbjct: 194 GHSNATLKEAKAGFRAGITFATHLYNAMPYITGREPGLAGAI----LDEADIYCGIIADG 249
Query: 296 VHTHPSALR------------IANSTHPEGSITP---FNGCVQFFMRSTRCSLWFDLGNC 340
+H + +R + ++T P G+ F G ++ R L D
Sbjct: 250 LHVDYANIRNAKRLKGDKLCLVTDATAPAGANIEQFIFAGKTIYY----RNGLCVDENGT 305
Query: 341 NNGGSITPFNGCVQFFMRSTRCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILD 400
+G S+T G V+ + +L L +A+L+PA+A+G+E+ GTL G A+
Sbjct: 306 LSGSSLTMIEG-VRNLVEHCGIALDEVLRMATLYPARAIGVEKRLGTLAAGKVANLTAFT 364
Query: 401 EGLHVYSTWIAGDLKLT 417
+ T + G+ +T
Sbjct: 365 PDFKITKTIVNGNEVVT 381
>sp|P44537|NAGA_HAEIN N-acetylglucosamine-6-phosphate deacetylase OS=Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
GN=nagA PE=3 SV=1
Length = 381
Score = 108 bits (270), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 82/225 (36%), Positives = 117/225 (52%), Gaps = 14/225 (6%)
Query: 6 FDCGGKLIAPGFIDIQINGGFGVDFSHDIDSVDKNVSIVARGILAHGVTSFCPTLVTSEP 65
D G + GFID+Q+NG GV F +D SV+ + I+ L G TSF PT +T+
Sbjct: 45 IDLQGNNLTAGFIDLQLNGCGGVMF-NDQTSVE-TLEIMQETNLKSGCTSFLPTFITAPD 102
Query: 66 QVYKKVLSRLRKTPGGKHGATVLGAHVEGPFISPDKKGAHSLSKIVTFDKGFDSVREVYG 125
+ K + +R+ KH LG H+EGP++S +KKG H I G
Sbjct: 103 ENIKSAVKIMREYLN-KHKNQALGLHIEGPYLSIEKKGVHRPEYIREITPEMKDFLCENG 161
Query: 126 NLSNIAIITLAPELAGSMEVIDKLVEQGITVSLGHSSADINIAEEAVRHGASLITHLFNA 185
++ I +T+A E ++ V+ GI VS+GHS+A +A+ A GA+ THL NA
Sbjct: 162 DV--ITKMTIAAE-NPTINYTPDFVKAGIIVSVGHSNATYEVAKAAFHKGATFATHLHNA 218
Query: 186 MLPFHH-RDPGIIG-LLSSDNIDSSKVYYGIIADGVHTHPSALRI 228
M P R+ G++G +L SD VY GII DGVH + +RI
Sbjct: 219 MSPISSGREMGVVGAVLDSD------VYTGIIVDGVHINYGNVRI 257
Score = 73.2 bits (178), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 91/199 (45%), Gaps = 30/199 (15%)
Query: 236 GHSSADIHIAEEAVRHGASLITHLFNAMLPFHH-RDPGIIG-LLSSDNIDSSKVYYGIIA 293
GHS+A +A+ A GA+ THL NAM P R+ G++G +L SD VY GII
Sbjct: 192 GHSNATYEVAKAAFHKGATFATHLHNAMSPISSGREMGVVGAVLDSD------VYTGIIV 245
Query: 294 DGVHTHPSALRI-----------------ANSTHPEGSITPFNGCVQFFMRSTRCSLWFD 336
DGVH + +RI A PE F G +++ RC +D
Sbjct: 246 DGVHINYGNVRIDKKIKGDKLCIVTDSIAAAGAPPELESFTFVGKT-IYIKEGRC---YD 301
Query: 337 LGNCNNGGSITPFNGCVQFFMRSTRCSLVHALEVASLHPAKALGLEQHKGTLDFGADADF 396
+ G SIT ++ + L A+ +++L+PA+A+G++ G+++ G A+
Sbjct: 302 ANDTIAGASITMMES-IKNAVEYVEIPLAEAIRMSNLYPARAIGIDDRLGSVEKGKIANL 360
Query: 397 VILDEGLHVYSTWIAGDLK 415
+ V T + G K
Sbjct: 361 AVFTPNYQVIGTVVNGKWK 379
>sp|P96166|NAGA_VIBFU N-acetylglucosamine-6-phosphate deacetylase OS=Vibrio furnissii
GN=manD PE=3 SV=1
Length = 399
Score = 106 bits (265), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 73/223 (32%), Positives = 115/223 (51%), Gaps = 17/223 (7%)
Query: 13 IAPGFIDIQINGGFGVDFSHDIDSVDKNVSIVARGILAHGVTSFCPTLVTSEPQVYKKVL 72
+ PG ID ++G G D +D+ +++ ++R GVT+F T VT+ + L
Sbjct: 57 LMPGLIDSHVHGSQGCDV---MDATHDSLNTMSRYFATLGVTAFVATTVTAPVAKIRAAL 113
Query: 73 SRLRKTP-GGKHGATVLGAHVEGPFISPDKKGAHSLSKIVTFDKGFDSVREVYGNLS--- 128
+++ K+ G GA +LGA++EGP+ + KGAH +V E+ +S
Sbjct: 114 AQVAKSKHDGVDGAEILGAYLEGPYFTEKNKGAHPTQWFREL-----AVEELEDWISYSD 168
Query: 129 -NIAIITLAPELAGSMEVIDKLVEQGITVSLGHSSADINIAEEAVRHGASLITHLFNAML 187
+ + LAPE G+++ I L GI V LGHS AD + A+ GA I H +N M
Sbjct: 169 NQLLKVALAPEKTGALDAIRYLDAHGIHVMLGHSDADYEQVKAALAAGAKGIVHCYNGMR 228
Query: 188 PFHHRDPGIIGLLSSDNIDSSKVYYGIIADGVHTHPSALRIAN 230
HHRDPG++G + + +IADG H HP+A+ +A+
Sbjct: 229 GLHHRDPGVVGA----GLLHPHCFVEMIADGHHVHPAAIDVAH 267
Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 85/195 (43%), Gaps = 26/195 (13%)
Query: 236 GHSSADIHIAEEAVRHGASLITHLFNAMLPFHHRDPGIIGLLSSDNIDSSKVYYGIIADG 295
GHS AD + A+ GA I H +N M HHRDPG++G + + +IADG
Sbjct: 200 GHSDADYEQVKAALAAGAKGIVHCYNGMRGLHHRDPGVVGA----GLLHPHCFVEMIADG 255
Query: 296 VHTHPSALRIAN----------------STHPEGSITPFNGCVQFFMRSTRCSLWFDLGN 339
H HP+A+ +A+ + P+G T G Q M+ +
Sbjct: 256 HHVHPAAIDVAHRCCGSRMTLITDAMRATGMPDGQYTL--GEYQVDMKQ---GVVMTSSG 310
Query: 340 CNNGGSITPFNGCVQFFMRSTRCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVIL 399
G ++T G V+ R + A +AS PA++LG++ G+L+ G A V +
Sbjct: 311 GLAGSTLTLLRG-VKNIHRWLNVPIEQAWLMASYTPAESLGIQHQLGSLEVGKYASMVAV 369
Query: 400 DEGLHVYSTWIAGDL 414
+ TW+ G L
Sbjct: 370 SSDFSIEKTWVKGRL 384
>sp|P42906|AGAA_ECOLI Putative N-acetylgalactosamine-6-phosphate deacetylase
OS=Escherichia coli (strain K12) GN=agaA PE=5 SV=3
Length = 167
Score = 78.2 bits (191), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 77/167 (46%), Gaps = 14/167 (8%)
Query: 258 HLFNAMLPFHHRDPGIIGLLSSDNIDSSKVYYGIIADGVHTHPSALRIANSTHPEGSITP 317
H +N M HHR+PG++G +D + + +IADG H HP+A+ + E +
Sbjct: 2 HCYNGMTGLHHREPGMVGAGLTDK----RAWLELIADGHHVHPAAMSLCCCCAKERIVLI 57
Query: 318 FNGCVQFFMRSTRCSLWFDLGNCNNG----------GSITPFNGCVQFFMRSTRCSLVHA 367
+ M R +L + + G GS + V+ + T + A
Sbjct: 58 TDAMQAAGMPDGRYTLCGEEVQMHGGVVRTASGGLAGSTLSVDAAVRNMVELTGVTPAEA 117
Query: 368 LEVASLHPAKALGLEQHKGTLDFGADADFVILDEGLHVYSTWIAGDL 414
+ +ASLHPA+ LG++ G+L G A V LD GLHV WI G L
Sbjct: 118 IHMASLHPARMLGVDGVLGSLKPGKRASVVALDSGLHVQQIWIQGQL 164
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Query: 181 HLFNAMLPFHHRDPGIIGLLSSDNIDSSKVYYGIIADGVHTHPSALRIANSTHPE 235
H +N M HHR+PG++G +D + + +IADG H HP+A+ + E
Sbjct: 2 HCYNGMTGLHHREPGMVGAGLTDK----RAWLELIADGHHVHPAAMSLCCCCAKE 52
>sp|Q02ES4|HUTI_PSEAB Imidazolonepropionase OS=Pseudomonas aeruginosa (strain UCBPP-PA14)
GN=hutI PE=3 SV=1
Length = 402
Score = 40.0 bits (92), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 361 RCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILD-EGLHVYSTWIAGDL 414
R + AL +LH A+ALGLE G+L+ G ADFV D E + W+ GDL
Sbjct: 334 RLTPEEALAGVTLHAARALGLEARHGSLEVGKLADFVAWDIERPAELAYWLGGDL 388
>sp|Q9HLJ0|HUTI_THEAC Probable imidazolonepropionase OS=Thermoplasma acidophilum (strain
ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=hutI PE=3 SV=1
Length = 410
Score = 40.0 bits (92), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
Query: 346 ITPFNG------CVQFFMRSTRCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVIL 399
I+P N + +R+ + L A+++PA +LGL + KGT++ G DAD V+L
Sbjct: 310 ISPLNMNDDMIFAMHLAVRNNHMNAEEVLNAATINPAASLGLAEKKGTIESGKDADLVVL 369
>sp|B2UW91|PYRC_CLOBA Dihydroorotase OS=Clostridium botulinum (strain Alaska E43 / Type
E3) GN=pyrC PE=3 SV=1
Length = 398
Score = 39.7 bits (91), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 347 TPFNGCVQFFMRSTRCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILD 400
T F C +R SL ++ SL+PAK LG+ +KG + G DAD V++D
Sbjct: 304 TAFPICYTKLVRENGVSLNELSKLMSLNPAKLLGM--NKGKISIGVDADLVLID 355
>sp|A3MA48|HUTI_ACIBT Imidazolonepropionase OS=Acinetobacter baumannii (strain ATCC 17978
/ NCDC KC 755) GN=hutI PE=3 SV=2
Length = 401
Score = 39.3 bits (90), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 361 RCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILD-EGLHVYSTWIAGDL 414
R + AL ++H A+ALGLEQ G+L+ G ADFV D E W+ GDL
Sbjct: 334 RLTPEQALAGVTIHAAQALGLEQTHGSLEQGKVADFVAWDIEHPSEIVYWLGGDL 388
>sp|B2I2C1|HUTI_ACIBC Imidazolonepropionase OS=Acinetobacter baumannii (strain ACICU)
GN=hutI PE=3 SV=1
Length = 401
Score = 39.3 bits (90), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 361 RCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILD-EGLHVYSTWIAGDL 414
R + AL ++H A+ALGLEQ G+L+ G ADFV D E W+ GDL
Sbjct: 334 RLTPEQALAGVTIHAAQALGLEQTHGSLEQGKVADFVAWDIEHPSEIVYWLGGDL 388
>sp|B7I268|HUTI_ACIB5 Imidazolonepropionase OS=Acinetobacter baumannii (strain AB0057)
GN=hutI PE=3 SV=1
Length = 401
Score = 38.9 bits (89), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 361 RCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILD-EGLHVYSTWIAGDL 414
R + AL ++H A+ALGLEQ G+L+ G ADFV D E W+ GDL
Sbjct: 334 RLTPEQALAGITIHAAQALGLEQTHGSLEQGKVADFVAWDIEHPSEIVYWLGGDL 388
>sp|B7GUU8|HUTI_ACIB3 Imidazolonepropionase OS=Acinetobacter baumannii (strain
AB307-0294) GN=hutI PE=3 SV=1
Length = 401
Score = 38.9 bits (89), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 361 RCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILD-EGLHVYSTWIAGDL 414
R + AL ++H A+ALGLEQ G+L+ G ADFV D E W+ GDL
Sbjct: 334 RLTPEQALAGITIHAAQALGLEQTHGSLEQGKVADFVAWDIEHPSEIVYWLGGDL 388
>sp|Q45515|HYDA_GEOSE D-hydantoinase OS=Geobacillus stearothermophilus PE=1 SV=1
Length = 471
Score = 38.5 bits (88), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 42/93 (45%), Gaps = 12/93 (12%)
Query: 319 NGCVQFFMRSTRCSLWF---------DLGNCNNGGSITPFNGCVQFF--MRSTRCSLVHA 367
NG +Q + S +CS F D NGG I + F ++ R +L
Sbjct: 306 NGQLQT-LGSDQCSFDFKGQKELGRGDFTKIPNGGPIIEDRVSILFSEGVKKGRITLNQF 364
Query: 368 LEVASLHPAKALGLEQHKGTLDFGADADFVILD 400
+++ S AK GL KGT+ GADAD VI D
Sbjct: 365 VDIVSTRIAKLFGLFPKKGTIAVGADADLVIFD 397
>sp|Q8VTT5|HYDA_BURPI D-hydantoinase OS=Burkholderia pickettii GN=hyuA PE=1 SV=1
Length = 457
Score = 38.5 bits (88), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 24/40 (60%)
Query: 361 RCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILD 400
R SL +E+ + PAK G+ KGT+ G+DAD V+ D
Sbjct: 355 RISLTQFVELVATRPAKVFGMFPQKGTIAVGSDADIVLWD 394
>sp|B7V3I5|HUTI_PSEA8 Imidazolonepropionase OS=Pseudomonas aeruginosa (strain LESB58)
GN=hutI PE=3 SV=1
Length = 402
Score = 38.5 bits (88), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 372 SLHPAKALGLEQHKGTLDFGADADFVILD-EGLHVYSTWIAGDL 414
+LH A+ALGLE G+L+ G ADFV D E + W+ GDL
Sbjct: 345 TLHAARALGLEASHGSLEVGKLADFVAWDIERPAELAYWLGGDL 388
>sp|Q9HU91|HUTI_PSEAE Imidazolonepropionase OS=Pseudomonas aeruginosa (strain ATCC 15692
/ PAO1 / 1C / PRS 101 / LMG 12228) GN=hutI PE=3 SV=1
Length = 402
Score = 38.5 bits (88), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 372 SLHPAKALGLEQHKGTLDFGADADFVILD-EGLHVYSTWIAGDL 414
+LH A+ALGLE G+L+ G ADFV D E + W+ GDL
Sbjct: 345 TLHAARALGLEASHGSLEVGKLADFVAWDIERPAELAYWLGGDL 388
>sp|Q44184|HYDA_RHIRD D-hydantoinase OS=Rhizobium radiobacter GN=hyuA PE=3 SV=1
Length = 457
Score = 38.1 bits (87), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 24/40 (60%)
Query: 361 RCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILD 400
R SL +E+ + PAK G+ KGT+ G+DAD V+ D
Sbjct: 355 RISLTQFVELVATRPAKVFGMFPEKGTVAVGSDADIVLWD 394
>sp|Q9KAH8|ALLB_BACHD Allantoinase OS=Bacillus halodurans (strain ATCC BAA-125 / DSM
18197 / FERM 7344 / JCM 9153 / C-125) GN=allB PE=1 SV=1
Length = 438
Score = 38.1 bits (87), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 5/69 (7%)
Query: 332 SLWFDLGNCNNGGSITPFNGCVQFFMRSTRCSLVHALEVASLHPAKALGLEQHKGTLDFG 391
+W + C N ++ G + L +++ S PAK GL KGT+ G
Sbjct: 331 EVWGGIAGCQNTLAVMLTEG-----YHKRKMPLTQIVQLLSTEPAKRFGLYPQKGTIQVG 385
Query: 392 ADADFVILD 400
A+A F ++D
Sbjct: 386 AEASFTLID 394
>sp|A6VDL0|HUTI_PSEA7 Imidazolonepropionase OS=Pseudomonas aeruginosa (strain PA7)
GN=hutI PE=3 SV=1
Length = 402
Score = 37.7 bits (86), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 361 RCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILD-EGLHVYSTWIAGDL 414
R + AL +LH A+ALGLE G+L+ G ADFV + E + W+ GDL
Sbjct: 334 RLTPEEALAGVTLHAARALGLEASHGSLEAGKLADFVAWEIERPAELAYWLGGDL 388
>sp|Q2RJW1|MTAD_MOOTA 5-methylthioadenosine/S-adenosylhomocysteine deaminase OS=Moorella
thermoacetica (strain ATCC 39073) GN=mtaD PE=3 SV=1
Length = 428
Score = 37.7 bits (86), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 26/35 (74%)
Query: 366 HALEVASLHPAKALGLEQHKGTLDFGADADFVILD 400
AL +A+L+ A+ALGLE+ GTL+ G AD +++D
Sbjct: 334 QALVMATLNGARALGLEKEIGTLEAGKKADLILVD 368
>sp|Q1Q9E2|HUTI_PSYCK Imidazolonepropionase OS=Psychrobacter cryohalolentis (strain K5)
GN=hutI PE=3 SV=2
Length = 427
Score = 37.4 bits (85), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 12/68 (17%)
Query: 339 NCNNGGS-----ITPFN-GCVQFFMRSTRCSLVHALEVASLHPAKALGLEQHKGTLDFGA 392
+CN G S + N GC F+M L A++H A+ALGL HKG ++ G
Sbjct: 340 DCNPGTSPLTSLLLAMNMGCTLFYMTPEEV-----LAGATVHAAQALGL-AHKGRIEVGC 393
Query: 393 DADFVILD 400
DAD + D
Sbjct: 394 DADLALWD 401
>sp|B2KCN5|PYRC_ELUMP Dihydroorotase OS=Elusimicrobium minutum (strain Pei191) GN=pyrC
PE=3 SV=1
Length = 432
Score = 36.6 bits (83), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
Query: 332 SLWFDLGNCNNGGSITPFNGCVQFFMRSTRCSLVHALEVASLHPAKALGLEQHKGTLDFG 391
+ FDL G T F ++S + + + SL+P+K LGL+ KGTL G
Sbjct: 315 EVEFDLAYFGIIGLETAFPLAYDVLVKSGLIDMAKLVGLMSLNPSKILGLK--KGTLTPG 372
Query: 392 ADADFVILDEGLHVYSTWI 410
ADAD I+D + W+
Sbjct: 373 ADADITIVD----LNKQWV 387
>sp|B2TNG1|PYRC_CLOBB Dihydroorotase OS=Clostridium botulinum (strain Eklund 17B / Type
B) GN=pyrC PE=3 SV=1
Length = 398
Score = 36.6 bits (83), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 347 TPFNGCVQFFMRSTRCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILD 400
T F C +R SL ++ SL+PA+ LG+ +KG + G +AD V++D
Sbjct: 304 TAFPICYTKLVRENGVSLNELSKLMSLNPARLLGM--NKGRISIGVEADLVLID 355
>sp|Q0I0K7|HUTI_SHESR Imidazolonepropionase OS=Shewanella sp. (strain MR-7) GN=hutI PE=3
SV=1
Length = 408
Score = 36.2 bits (82), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
Query: 352 CVQFFMRSTRCSLV-----HALEVASLHPAKALGLEQHKGTLDFGADADFVILD 400
C M + C+L AL +L+ AKALG+E++ G+L G ADF + D
Sbjct: 327 CSTLLMLNMGCTLFRLTPEEALAGLTLNAAKALGIEENVGSLVVGKQADFCLWD 380
>sp|Q0HP39|HUTI_SHESM Imidazolonepropionase OS=Shewanella sp. (strain MR-4) GN=hutI PE=3
SV=1
Length = 408
Score = 36.2 bits (82), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
Query: 352 CVQFFMRSTRCSLV-----HALEVASLHPAKALGLEQHKGTLDFGADADFVILD 400
C M + C+L AL +L+ AKALG+E++ G+L G ADF + D
Sbjct: 327 CSTLLMLNMGCTLFRLTPEEALAGLTLNAAKALGIEENVGSLVVGKQADFCLWD 380
>sp|A6WHH8|HUTI_SHEB8 Imidazolonepropionase OS=Shewanella baltica (strain OS185) GN=hutI
PE=3 SV=1
Length = 408
Score = 36.2 bits (82), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
Query: 352 CVQFFMRSTRCSLV-----HALEVASLHPAKALGLEQHKGTLDFGADADFVILD 400
C M + C+L AL+ +L+ AKALG+E + G+L G ADF + D
Sbjct: 327 CSTLLMLNMGCTLFRLTPEEALKGLTLNAAKALGIEDNVGSLVVGKQADFCLWD 380
>sp|B8E3L5|HUTI_SHEB2 Imidazolonepropionase OS=Shewanella baltica (strain OS223) GN=hutI
PE=3 SV=1
Length = 410
Score = 36.2 bits (82), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
Query: 352 CVQFFMRSTRCSLV-----HALEVASLHPAKALGLEQHKGTLDFGADADFVILD 400
C M + C+L AL+ +L+ AKALG+E + G+L G ADF + D
Sbjct: 327 CSTLLMLNMGCTLFRLTPEEALKGLTLNAAKALGIEDNVGSLVVGKQADFCLWD 380
>sp|Q4KJN0|HUTI_PSEF5 Imidazolonepropionase OS=Pseudomonas fluorescens (strain Pf-5 /
ATCC BAA-477) GN=hutI PE=3 SV=1
Length = 401
Score = 36.2 bits (82), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 361 RCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVI--LDEGLHVYSTWIAGDLK 415
R + AL +LH A+ALG+E+ G+L+ G ADFV +D + + W+ GDL+
Sbjct: 334 RMTPEEALAGVTLHAAQALGMEKTHGSLEVGKVADFVAWQIDRPADL-AYWLGGDLE 389
>sp|A9KV78|HUTI_SHEB9 Imidazolonepropionase OS=Shewanella baltica (strain OS195) GN=hutI
PE=3 SV=1
Length = 408
Score = 36.2 bits (82), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
Query: 352 CVQFFMRSTRCSLV-----HALEVASLHPAKALGLEQHKGTLDFGADADFVILD 400
C M + C+L AL+ +L+ AKALG+E + G+L G ADF + D
Sbjct: 327 CSTLLMLNMGCTLFRLTPEEALKGLTLNAAKALGIEDNVGSLLVGKQADFCLWD 380
>sp|Q978N3|HUTI_THEVO Probable imidazolonepropionase OS=Thermoplasma volcanium (strain
ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1)
GN=hutI PE=3 SV=1
Length = 404
Score = 35.8 bits (81), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 24/35 (68%)
Query: 366 HALEVASLHPAKALGLEQHKGTLDFGADADFVILD 400
AL +++ A +LGL + KGT++ G DAD VI+D
Sbjct: 335 EALTATTINAASSLGLGEKKGTVEEGKDADIVIID 369
>sp|A0KRC4|HUTI_SHESA Imidazolonepropionase OS=Shewanella sp. (strain ANA-3) GN=hutI PE=3
SV=1
Length = 408
Score = 35.4 bits (80), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
Query: 352 CVQFFMRSTRCSLV-----HALEVASLHPAKALGLEQHKGTLDFGADADFVILD 400
C M + C+L AL +L+ AKALG+E+ G+L G ADF + D
Sbjct: 327 CSTLLMLNMGCTLFRLTPEEALAGLTLNAAKALGIEESVGSLVVGKQADFCLWD 380
>sp|Q8U8Z6|HUTI_AGRT5 Imidazolonepropionase OS=Agrobacterium tumefaciens (strain C58 /
ATCC 33970) GN=hutI PE=1 SV=1
Length = 419
Score = 35.4 bits (80), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 30/68 (44%), Gaps = 11/68 (16%)
Query: 339 NCNNGGS------ITPFNGCVQFFMRSTRCSLVHALEVASLHPAKALGLEQHKGTLDFGA 392
+CN G S +T G F M C L + + AKALGL GTL+ G
Sbjct: 329 DCNPGTSPLTSLLLTMNMGATLFRMTVEEC-----LTATTRNAAKALGLLAETGTLEAGK 383
Query: 393 DADFVILD 400
ADF I D
Sbjct: 384 SADFAIWD 391
>sp|A3DAF6|HUTI_SHEB5 Imidazolonepropionase OS=Shewanella baltica (strain OS155 / ATCC
BAA-1091) GN=hutI PE=3 SV=1
Length = 408
Score = 35.4 bits (80), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
Query: 352 CVQFFMRSTRCSLV-----HALEVASLHPAKALGLEQHKGTLDFGADADFVILD 400
C M + C+L AL +L+ AKALG+E + G+L G ADF + D
Sbjct: 327 CSTLLMLNMGCTLFRLTPEEALTGLTLNAAKALGIEDNVGSLVVGKQADFCLWD 380
>sp|A1RQ59|HUTI_SHESW Imidazolonepropionase OS=Shewanella sp. (strain W3-18-1) GN=hutI
PE=3 SV=1
Length = 408
Score = 35.0 bits (79), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
Query: 352 CVQFFMRSTRCSLV-----HALEVASLHPAKALGLEQHKGTLDFGADADFVILD 400
C M + C+L AL +L+ AKALG+E + G+L G ADF + D
Sbjct: 327 CSTLLMLNMGCTLFRLTPEEALTGLTLNAAKALGIEDNVGSLVVGKQADFCLWD 380
>sp|Q07W34|HUTI_SHEFN Imidazolonepropionase OS=Shewanella frigidimarina (strain NCIMB
400) GN=hutI PE=3 SV=1
Length = 410
Score = 35.0 bits (79), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
Query: 352 CVQFFMRSTRCSLV-----HALEVASLHPAKALGLEQHKGTLDFGADADFVILD 400
C M + C+L AL+ +++ AKALG++ + G++ G ADF + D
Sbjct: 327 CSTLLMLNMACTLFRLTPEEALQGVTINAAKALGIDNNVGSITVGKQADFCLWD 380
>sp|Q6L2W1|HUTI_PICTO Probable imidazolonepropionase OS=Picrophilus torridus (strain ATCC
700027 / DSM 9790 / JCM 10055 / NBRC 100828) GN=hutI
PE=3 SV=1
Length = 394
Score = 35.0 bits (79), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 32/49 (65%)
Query: 352 CVQFFMRSTRCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILD 400
+ +R SL +A++ A+++ A++L +++ G+++ G +AD +ILD
Sbjct: 312 AIYLAVRYCNISLENAIKAATINGARSLKIDESTGSIEPGKNADLIILD 360
>sp|O15909|RIR1_TRYBB Ribonucleoside-diphosphate reductase large subunit OS=Trypanosoma
brucei brucei GN=RNR1 PE=2 SV=1
Length = 838
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 55/123 (44%), Gaps = 11/123 (8%)
Query: 94 GPFISPD-----KKGAHSLSKIVTFDKGFDSVREVYGNLSNIAIITLAPELAGSMEVIDK 148
P IS + K + +L +I+ +++ FD Y L ++ + + G MEV+++
Sbjct: 118 APLISEELWDIANKHSAALQQIINYERDFDFEYFGYKTLERSYLLRVH-KGRGVMEVVER 176
Query: 149 LVEQGITVSLGHSSADINIAEEAVRHGAS-LITH----LFNAMLPFHHRDPGIIGLLSSD 203
+ + V+LG D+ +E + + TH LFNA PF + + D
Sbjct: 177 PQQMFLRVALGIHGEDLERVKETYDYMSQGFFTHATPTLFNAGTPFPQMSSCFLVAMRED 236
Query: 204 NID 206
+ID
Sbjct: 237 SID 239
>sp|Q1R7F8|PHYDA_ECOUT D-phenylhydantoinase OS=Escherichia coli (strain UTI89 / UPEC)
GN=hyuA PE=3 SV=2
Length = 461
Score = 34.7 bits (78), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 23/40 (57%)
Query: 361 RCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILD 400
R SL +E+ S PA+ GL KG L G+D D VI+D
Sbjct: 356 RISLERFVELTSAMPARLFGLWPQKGILAPGSDGDVVIID 395
>sp|A1AF64|PHYDA_ECOK1 D-phenylhydantoinase OS=Escherichia coli O1:K1 / APEC GN=hyuA PE=3
SV=1
Length = 461
Score = 34.7 bits (78), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 23/40 (57%)
Query: 361 RCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILD 400
R SL +E+ S PA+ GL KG L G+D D VI+D
Sbjct: 356 RISLERFVELTSAMPARLFGLWPQKGILAPGSDGDVVIID 395
>sp|B7MM60|PHYDA_ECO45 D-phenylhydantoinase OS=Escherichia coli O45:K1 (strain S88 /
ExPEC) GN=hyuA PE=3 SV=1
Length = 461
Score = 34.7 bits (78), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 23/40 (57%)
Query: 361 RCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILD 400
R SL +E+ S PA+ GL KG L G+D D VI+D
Sbjct: 356 RISLERFVELTSAMPARLFGLWPQKGILAPGSDGDVVIID 395
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.138 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 164,740,907
Number of Sequences: 539616
Number of extensions: 7098730
Number of successful extensions: 16848
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 50
Number of HSP's that attempted gapping in prelim test: 16639
Number of HSP's gapped (non-prelim): 175
length of query: 417
length of database: 191,569,459
effective HSP length: 120
effective length of query: 297
effective length of database: 126,815,539
effective search space: 37664215083
effective search space used: 37664215083
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)