Query psy12256
Match_columns 417
No_of_seqs 209 out of 2486
Neff 8.6
Searched_HMMs 46136
Date Fri Aug 16 22:43:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12256.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12256hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1820 NagA N-acetylglucosami 100.0 8.6E-75 1.9E-79 551.4 33.2 341 2-417 39-380 (380)
2 TIGR00221 nagA N-acetylglucosa 100.0 5.3E-68 1.1E-72 522.1 33.3 336 3-413 44-380 (380)
3 PRK11170 nagA N-acetylglucosam 100.0 5.1E-67 1.1E-71 516.5 34.7 339 3-417 41-381 (382)
4 KOG3892|consensus 100.0 4E-62 8.8E-67 434.9 22.3 351 1-417 52-404 (407)
5 cd00854 NagA N-acetylglucosami 100.0 2.7E-56 5.9E-61 441.8 33.9 335 3-412 39-374 (374)
6 TIGR03583 EF_0837 probable ami 100.0 4.2E-28 9.2E-33 240.1 21.1 292 3-415 37-364 (365)
7 TIGR02033 D-hydantoinase D-hyd 99.9 5.6E-26 1.2E-30 231.5 17.8 77 340-416 336-437 (454)
8 KOG2584|consensus 99.9 3.2E-26 7E-31 217.0 10.8 343 3-417 54-454 (522)
9 PRK10027 cryptic adenine deami 99.9 1.3E-22 2.9E-27 208.8 26.1 131 235-416 233-365 (588)
10 TIGR01975 isoAsp_dipep isoaspa 99.9 1.6E-22 3.6E-27 200.1 23.3 306 5-416 46-377 (389)
11 PRK13404 dihydropyrimidinase; 99.9 1.2E-22 2.6E-27 207.3 22.5 336 3-416 42-444 (477)
12 COG0044 PyrC Dihydroorotase an 99.9 3.1E-22 6.7E-27 199.4 22.1 79 337-417 318-421 (430)
13 cd01299 Met_dep_hydrolase_A Me 99.9 6.5E-22 1.4E-26 194.2 23.7 168 3-183 1-201 (342)
14 COG1001 AdeC Adenine deaminase 99.9 5.5E-22 1.2E-26 197.5 22.3 280 2-416 64-358 (584)
15 TIGR01178 ade adenine deaminas 99.9 2.1E-21 4.6E-26 199.8 27.3 282 3-416 38-331 (552)
16 PRK08417 dihydroorotase; Provi 99.9 2.1E-21 4.5E-26 193.3 22.9 78 338-417 291-386 (386)
17 PRK15446 phosphonate metabolis 99.9 1.9E-20 4.1E-25 185.9 28.0 64 353-417 315-381 (383)
18 TIGR02318 phosphono_phnM phosp 99.9 5.9E-20 1.3E-24 181.9 28.5 65 351-416 309-376 (376)
19 PRK08323 phenylhydantoinase; V 99.9 4.5E-21 9.7E-26 195.7 21.1 352 2-416 36-435 (459)
20 cd01314 D-HYD D-hydantoinases 99.9 1.3E-20 2.8E-25 191.7 23.4 78 339-416 333-435 (447)
21 COG3964 Predicted amidohydrola 99.9 1.3E-20 2.8E-25 171.8 20.8 286 3-412 45-350 (386)
22 PRK09236 dihydroorotase; Revie 99.9 2.4E-20 5.2E-25 189.2 23.6 76 339-416 326-426 (444)
23 PRK12394 putative metallo-depe 99.9 2.5E-19 5.4E-24 178.2 29.8 70 347-417 287-375 (379)
24 PRK07627 dihydroorotase; Provi 99.9 2.9E-20 6.3E-25 187.0 22.5 76 339-417 323-423 (425)
25 PRK04250 dihydroorotase; Provi 99.9 4.8E-20 1E-24 183.8 23.7 75 339-416 285-384 (398)
26 TIGR00857 pyrC_multi dihydroor 99.9 6.2E-20 1.4E-24 184.4 23.7 78 338-417 308-410 (411)
27 PLN02942 dihydropyrimidinase 99.9 6.9E-20 1.5E-24 187.7 24.0 77 340-416 340-441 (486)
28 PRK07575 dihydroorotase; Provi 99.9 4.3E-20 9.3E-25 186.9 21.1 75 340-416 321-420 (438)
29 PRK08044 allantoinase; Provisi 99.9 8.4E-20 1.8E-24 185.1 23.2 79 338-417 331-434 (449)
30 PRK06189 allantoinase; Provisi 99.9 6.5E-20 1.4E-24 186.4 21.8 77 339-416 330-431 (451)
31 cd01308 Isoaspartyl-dipeptidas 99.8 5.1E-19 1.1E-23 176.7 27.7 109 300-416 263-375 (387)
32 cd01315 L-HYD_ALN L-Hydantoina 99.8 1.8E-19 3.9E-24 183.3 24.9 79 338-416 329-432 (447)
33 PRK09060 dihydroorotase; Valid 99.8 8.4E-20 1.8E-24 185.0 21.9 76 339-416 322-422 (444)
34 TIGR03178 allantoinase allanto 99.8 1.6E-19 3.4E-24 183.3 23.9 77 339-416 327-428 (443)
35 PRK10657 isoaspartyl dipeptida 99.8 3.7E-19 7.9E-24 177.8 25.5 72 344-416 305-376 (388)
36 PRK09059 dihydroorotase; Valid 99.8 1.4E-19 3.1E-24 182.2 22.2 77 338-417 327-428 (429)
37 PRK09237 dihydroorotase; Provi 99.8 1.5E-18 3.2E-23 172.9 29.2 68 347-416 282-368 (380)
38 PRK07369 dihydroorotase; Provi 99.8 8E-20 1.7E-24 183.3 20.0 63 338-402 323-385 (418)
39 PRK09357 pyrC dihydroorotase; 99.8 5.1E-20 1.1E-24 186.0 18.7 76 340-417 322-422 (423)
40 PRK01211 dihydroorotase; Provi 99.8 8.2E-19 1.8E-23 175.0 23.5 76 338-416 290-389 (409)
41 COG1228 HutI Imidazolonepropio 99.8 1.4E-19 3E-24 179.5 17.6 71 346-417 321-402 (406)
42 PRK06687 chlorohydrolase; Vali 99.8 3.4E-19 7.3E-24 179.7 20.6 56 361-416 333-409 (419)
43 cd01307 Met_dep_hydrolase_B Me 99.8 5.3E-18 1.2E-22 166.2 27.4 290 3-412 22-327 (338)
44 PRK09228 guanine deaminase; Pr 99.8 8.3E-19 1.8E-23 177.2 22.1 74 344-417 325-431 (433)
45 PRK07228 N-ethylammeline chlor 99.8 7.4E-19 1.6E-23 178.7 21.3 56 361-416 336-413 (445)
46 PRK02382 dihydroorotase; Provi 99.8 3.5E-19 7.7E-24 180.6 18.9 77 339-417 319-419 (443)
47 cd01317 DHOase_IIa Dihydroorot 99.8 7.1E-19 1.5E-23 174.7 20.5 63 338-402 281-343 (374)
48 PRK08203 hydroxydechloroatrazi 99.8 7.9E-19 1.7E-23 178.7 21.3 55 361-416 350-423 (451)
49 PRK00369 pyrC dihydroorotase; 99.8 1.2E-18 2.5E-23 173.0 20.9 76 338-416 275-372 (392)
50 PRK09045 N-ethylammeline chlor 99.8 9.1E-19 2E-23 177.8 19.4 56 361-416 339-414 (443)
51 PLN02795 allantoinase 99.8 3.8E-18 8.1E-23 175.1 23.9 76 339-416 386-488 (505)
52 PRK15493 5-methylthioadenosine 99.8 1.9E-18 4.2E-23 174.8 20.2 55 361-416 334-409 (435)
53 cd01295 AdeC Adenine deaminase 99.8 1.2E-17 2.6E-22 168.4 25.4 67 349-417 223-291 (422)
54 cd01297 D-aminoacylase D-amino 99.8 1.8E-18 3.9E-23 174.1 19.3 67 349-416 321-403 (415)
55 PRK09356 imidazolonepropionase 99.8 3.2E-18 6.9E-23 172.0 20.8 69 349-417 327-406 (406)
56 cd01298 ATZ_TRZ_like TRZ/ATZ f 99.8 3.7E-18 8E-23 171.6 20.8 55 361-416 331-405 (411)
57 PRK08204 hypothetical protein; 99.8 1E-17 2.2E-22 170.6 23.5 57 360-416 340-416 (449)
58 TIGR02967 guan_deamin guanine 99.8 2.6E-17 5.7E-22 165.1 26.2 59 344-402 300-363 (401)
59 PRK12393 amidohydrolase; Provi 99.8 1.6E-17 3.4E-22 169.2 22.5 55 361-416 354-428 (457)
60 PRK06380 metal-dependent hydro 99.8 1.7E-17 3.7E-22 167.3 21.9 54 361-416 324-399 (418)
61 TIGR01224 hutI imidazoloneprop 99.8 1.1E-17 2.4E-22 166.4 20.2 67 348-414 300-377 (377)
62 cd01296 Imidazolone-5PH Imidaz 99.8 1.9E-17 4.2E-22 164.3 21.9 64 349-412 297-371 (371)
63 PRK07213 chlorohydrolase; Prov 99.8 4.2E-17 9.1E-22 162.0 23.8 68 346-414 290-375 (375)
64 PRK09061 D-glutamate deacylase 99.8 1.5E-17 3.2E-22 170.9 20.8 69 347-416 400-489 (509)
65 PRK13985 ureB urease subunit b 99.8 8.4E-17 1.8E-21 161.8 25.2 57 361-417 398-457 (568)
66 cd01318 DHOase_IIb Dihydroorot 99.8 1.2E-17 2.6E-22 164.7 18.8 60 341-402 267-326 (361)
67 cd01302 Cyclic_amidohydrolases 99.8 7.7E-17 1.7E-21 157.7 23.0 294 11-403 1-307 (337)
68 PRK13207 ureC urease subunit a 99.8 8.2E-17 1.8E-21 163.5 23.5 50 368-417 405-457 (568)
69 cd00375 Urease_alpha Urease al 99.8 2.2E-16 4.8E-21 159.3 26.0 71 347-417 373-457 (567)
70 PRK13206 ureC urease subunit a 99.8 1.5E-16 3.2E-21 161.2 24.5 57 361-417 403-462 (573)
71 PRK13308 ureC urease subunit a 99.8 6.4E-17 1.4E-21 163.2 21.4 50 367-416 405-457 (569)
72 cd01312 Met_dep_hydrolase_D Me 99.8 4.1E-17 9E-22 162.1 19.8 66 346-413 295-381 (381)
73 cd01303 GDEase Guanine deamina 99.8 1.2E-16 2.7E-21 161.4 23.3 42 361-402 350-391 (429)
74 PLN02303 urease 99.8 7.1E-17 1.5E-21 167.9 21.4 56 362-417 668-726 (837)
75 PRK07203 putative chlorohydrol 99.8 2.8E-17 6.1E-22 166.9 17.5 55 362-416 338-414 (442)
76 TIGR03121 one_C_dehyd_A formyl 99.7 1.3E-17 2.9E-22 168.5 14.2 56 360-416 428-498 (556)
77 PRK14085 imidazolonepropionase 99.7 3.3E-16 7.1E-21 156.1 23.1 64 349-413 311-374 (382)
78 COG3454 Metal-dependent hydrol 99.7 4.1E-16 8.9E-21 144.1 21.1 67 349-416 307-377 (377)
79 cd01293 Bact_CD Bacterial cyto 99.7 3.3E-16 7E-21 156.7 21.9 66 348-415 320-398 (398)
80 PRK06151 N-ethylammeline chlor 99.7 2.9E-16 6.2E-21 161.2 21.4 55 361-416 363-437 (488)
81 cd01313 Met_dep_hydrolase_E Me 99.7 2.8E-16 6.1E-21 158.3 19.8 51 361-413 346-418 (418)
82 PRK08418 chlorohydrolase; Prov 99.7 4.6E-16 9.9E-21 156.1 19.3 70 345-416 317-408 (408)
83 PRK09229 N-formimino-L-glutama 99.7 5.4E-16 1.2E-20 158.0 19.9 54 361-416 356-431 (456)
84 TIGR01792 urease_alph urease, 99.7 8.5E-16 1.8E-20 156.3 20.5 49 368-416 404-455 (567)
85 PRK06038 N-ethylammeline chlor 99.7 2.9E-16 6.2E-21 158.8 16.9 55 360-416 326-400 (430)
86 TIGR03314 Se_ssnA putative sel 99.7 2.9E-16 6.4E-21 159.2 16.6 54 363-416 338-413 (441)
87 TIGR02022 hutF formiminoglutam 99.7 9.4E-16 2E-20 156.0 20.2 54 361-416 356-431 (455)
88 PRK08393 N-ethylammeline chlor 99.7 6.3E-16 1.4E-20 156.1 18.7 53 362-416 327-399 (424)
89 cd01306 PhnM PhnM is believed 99.7 7.4E-15 1.6E-19 141.6 24.4 61 351-412 262-325 (325)
90 COG1820 NagA N-acetylglucosami 99.7 2E-16 4.2E-21 151.9 12.5 186 115-322 74-275 (380)
91 PRK07572 cytosine deaminase; V 99.7 2.1E-15 4.5E-20 152.4 20.1 69 347-417 321-402 (426)
92 PF01979 Amidohydro_1: Amidohy 99.7 1.8E-17 3.9E-22 161.6 2.0 49 351-400 285-333 (333)
93 cd01304 FMDH_A Formylmethanofu 99.7 1.9E-14 4.2E-19 145.1 23.1 55 361-416 426-496 (541)
94 cd01316 CAD_DHOase The eukaryo 99.7 6.9E-15 1.5E-19 143.7 18.8 69 339-416 239-332 (344)
95 PRK13309 ureC urease subunit a 99.6 5.5E-14 1.2E-18 143.3 25.9 57 361-417 402-461 (572)
96 PRK07583 cytosine deaminase-li 99.6 1.5E-14 3.3E-19 146.6 19.7 55 361-416 359-422 (438)
97 cd01309 Met_dep_hydrolase_C Me 99.6 2.4E-14 5.3E-19 141.3 20.5 67 349-416 288-359 (359)
98 COG0402 SsnA Cytosine deaminas 99.6 1E-14 2.2E-19 147.2 16.1 49 367-416 341-408 (421)
99 PRK09230 cytosine deaminase; P 99.6 7.5E-14 1.6E-18 140.8 22.1 52 364-417 346-406 (426)
100 PRK05985 cytosine deaminase; P 99.6 2.8E-13 6.1E-18 135.5 24.7 53 363-417 328-389 (391)
101 PF13147 Amidohydro_4: Amidohy 99.6 6.4E-16 1.4E-20 147.2 4.4 53 344-397 252-304 (304)
102 KOG3968|consensus 99.6 2.2E-14 4.7E-19 137.4 13.5 58 360-417 356-438 (439)
103 PRK06846 putative deaminase; V 99.5 9.9E-13 2.2E-17 132.3 19.7 70 347-417 323-405 (410)
104 COG1574 Predicted metal-depend 99.5 8.9E-13 1.9E-17 134.3 17.6 57 361-417 466-533 (535)
105 PRK11170 nagA N-acetylglucosam 99.5 1.5E-13 3.2E-18 136.3 8.7 95 224-322 179-276 (382)
106 TIGR00221 nagA N-acetylglucosa 99.4 2.5E-13 5.5E-18 134.3 8.7 95 224-322 181-279 (380)
107 cd01300 YtcJ_like YtcJ_like me 99.2 1.2E-09 2.6E-14 112.3 19.5 39 360-398 441-479 (479)
108 KOG3892|consensus 99.1 3.8E-11 8.2E-16 108.7 5.1 101 223-323 195-299 (407)
109 COG3653 N-acyl-D-aspartate/D-g 99.0 5.4E-09 1.2E-13 100.5 15.3 53 349-402 457-513 (579)
110 PF13594 Amidohydro_5: Amidohy 99.0 1.7E-10 3.6E-15 85.5 4.0 47 3-56 22-68 (68)
111 cd01294 DHOase Dihydroorotase 99.0 3.4E-09 7.3E-14 103.9 13.4 121 14-162 3-134 (335)
112 cd00854 NagA N-acetylglucosami 98.8 2.1E-08 4.5E-13 99.8 8.8 95 224-322 176-274 (374)
113 cd01305 archeal_chlorohydrolas 98.7 6E-07 1.3E-11 84.9 15.9 32 347-378 228-263 (263)
114 COG0804 UreC Urea amidohydrola 98.7 2.5E-07 5.4E-12 88.5 12.6 52 365-416 402-456 (568)
115 COG1229 FwdA Formylmethanofura 98.5 1.2E-05 2.7E-10 77.3 19.6 55 361-415 437-508 (575)
116 TIGR00856 pyrC_dimer dihydroor 98.2 3.9E-05 8.5E-10 75.2 14.0 57 340-406 261-317 (341)
117 TIGR00010 hydrolase, TatD fami 97.9 0.005 1.1E-07 57.4 21.9 33 349-381 220-252 (252)
118 PF07969 Amidohydro_3: Amidohy 97.8 1.4E-05 3E-10 80.2 3.6 39 360-398 366-404 (404)
119 cd01292 metallo-dependent_hydr 97.6 0.0017 3.7E-08 60.6 14.0 32 347-378 242-275 (275)
120 PLN02599 dihydroorotase 97.3 0.024 5.2E-07 56.0 18.4 126 11-162 22-157 (364)
121 cd01310 TatD_DNAse TatD like p 97.3 0.16 3.4E-06 47.1 23.3 35 346-380 217-251 (251)
122 PRK10812 putative DNAse; Provi 96.7 0.44 9.6E-06 45.0 20.3 35 348-382 223-257 (265)
123 PRK06886 hypothetical protein; 96.4 1 2.2E-05 44.0 22.2 36 347-382 292-328 (329)
124 COG0084 TatD Mg-dependent DNas 96.4 0.82 1.8E-05 42.9 20.9 34 348-381 223-256 (256)
125 PRK11449 putative deoxyribonuc 96.1 1.3 2.8E-05 41.7 20.7 34 348-381 225-258 (258)
126 cd00530 PTE Phosphotriesterase 96.0 1.4 3.1E-05 42.0 20.3 30 350-379 264-293 (293)
127 COG1099 Predicted metal-depend 95.5 1.8 4E-05 39.2 16.9 67 295-381 187-253 (254)
128 PRK09875 putative hydrolase; P 95.3 1.7 3.6E-05 41.7 17.4 31 349-380 262-292 (292)
129 PF12890 DHOase: Dihydro-orota 94.5 0.022 4.8E-07 47.0 2.0 16 10-25 1-16 (142)
130 PRK10425 DNase TatD; Provision 94.0 5.4 0.00012 37.5 21.4 35 347-381 224-258 (258)
131 PRK05451 dihydroorotase; Provi 94.0 0.056 1.2E-06 53.2 4.0 30 362-391 284-313 (345)
132 COG4464 CapC Capsular polysacc 92.3 0.44 9.5E-06 42.8 6.5 59 17-78 1-65 (254)
133 TIGR03583 EF_0837 probable ami 91.2 0.11 2.3E-06 51.5 1.8 66 234-305 184-250 (365)
134 COG5016 Pyruvate/oxaloacetate 89.6 4.9 0.00011 39.7 11.3 132 38-187 97-236 (472)
135 PF07969 Amidohydro_3: Amidohy 89.5 0.11 2.5E-06 51.9 0.2 14 12-25 1-14 (404)
136 PF01026 TatD_DNase: TatD rela 89.5 18 0.00039 33.7 19.9 33 348-380 223-255 (255)
137 TIGR01430 aden_deam adenosine 89.4 3.2 6.9E-05 40.3 10.3 34 348-382 280-313 (324)
138 TIGR01235 pyruv_carbox pyruvat 84.1 20 0.00044 41.0 14.1 141 38-189 624-771 (1143)
139 cd01320 ADA Adenosine deaminas 82.6 13 0.00029 35.9 10.7 35 347-382 280-314 (325)
140 PRK06015 keto-hydroxyglutarate 82.1 19 0.00042 32.4 10.6 89 130-256 30-121 (201)
141 cd00956 Transaldolase_FSA Tran 81.5 14 0.0003 33.6 9.6 90 142-257 90-183 (211)
142 PRK14042 pyruvate carboxylase 79.5 21 0.00045 37.8 11.4 134 39-189 96-236 (596)
143 PRK09358 adenosine deaminase; 78.9 39 0.00085 32.9 12.7 35 347-382 289-323 (340)
144 TIGR01182 eda Entner-Doudoroff 74.7 40 0.00086 30.5 10.3 89 130-256 34-125 (204)
145 PRK05451 dihydroorotase; Provi 74.5 14 0.0003 36.3 8.1 42 12-65 5-46 (345)
146 PRK06015 keto-hydroxyglutarate 73.3 70 0.0015 28.8 12.1 111 38-183 15-125 (201)
147 PTZ00170 D-ribulose-5-phosphat 72.5 40 0.00086 31.0 10.1 114 41-180 77-199 (228)
148 PRK06552 keto-hydroxyglutarate 71.0 64 0.0014 29.3 10.9 90 130-257 39-134 (213)
149 COG0800 Eda 2-keto-3-deoxy-6-p 70.9 65 0.0014 29.2 10.6 110 38-182 24-133 (211)
150 PF01081 Aldolase: KDPG and KH 70.4 30 0.00066 31.0 8.5 89 130-256 34-125 (196)
151 TIGR01182 eda Entner-Doudoroff 70.0 85 0.0018 28.4 11.9 111 38-183 19-129 (204)
152 cd04728 ThiG Thiazole synthase 69.4 80 0.0017 29.3 11.1 60 118-179 82-148 (248)
153 TIGR00559 pdxJ pyridoxine 5'-p 69.3 9.5 0.00021 35.1 5.1 38 143-181 113-150 (237)
154 cd00003 PNPsynthase Pyridoxine 68.1 10 0.00023 34.7 5.1 38 143-181 113-150 (234)
155 COG0854 PdxJ Pyridoxal phospha 67.9 8.9 0.00019 34.7 4.5 39 142-181 113-151 (243)
156 PF04131 NanE: Putative N-acet 67.5 65 0.0014 28.7 9.7 114 43-183 3-120 (192)
157 PRK05265 pyridoxine 5'-phospha 67.4 11 0.00024 34.7 5.1 38 143-181 116-153 (239)
158 PRK00208 thiG thiazole synthas 67.2 78 0.0017 29.5 10.5 60 118-179 82-148 (250)
159 PRK05718 keto-hydroxyglutarate 66.8 87 0.0019 28.4 10.9 89 130-256 41-132 (212)
160 PF03740 PdxJ: Pyridoxal phosp 66.2 10 0.00022 34.9 4.7 38 143-181 114-151 (239)
161 PRK12330 oxaloacetate decarbox 65.5 63 0.0014 33.5 10.7 131 40-187 98-237 (499)
162 PRK06552 keto-hydroxyglutarate 65.2 1.1E+02 0.0024 27.8 11.6 111 38-181 24-135 (213)
163 KOG3111|consensus 60.7 1.3E+02 0.0027 27.0 10.2 53 127-181 135-196 (224)
164 PRK08745 ribulose-phosphate 3- 59.9 1.4E+02 0.0031 27.3 11.4 63 115-181 124-198 (223)
165 PRK12999 pyruvate carboxylase; 59.5 1.3E+02 0.0027 34.9 12.7 139 41-189 629-773 (1146)
166 cd01311 PDC_hydrolase 2-pyrone 59.2 1.5E+02 0.0033 27.5 11.6 20 142-162 112-131 (263)
167 PRK12581 oxaloacetate decarbox 56.7 2E+02 0.0043 29.6 12.4 132 39-187 105-243 (468)
168 TIGR01858 tag_bisphos_ald clas 56.6 1.6E+02 0.0035 28.0 11.1 125 44-179 87-227 (282)
169 PRK12738 kbaY tagatose-bisphos 56.2 1.7E+02 0.0038 27.9 11.3 125 44-179 89-229 (286)
170 PRK07114 keto-hydroxyglutarate 55.5 1.7E+02 0.0036 26.8 11.0 89 130-256 41-136 (222)
171 COG1038 PycA Pyruvate carboxyl 55.2 84 0.0018 34.3 9.5 139 40-190 631-777 (1149)
172 PRK09140 2-dehydro-3-deoxy-6-p 54.2 1.6E+02 0.0034 26.6 10.2 109 38-180 21-129 (206)
173 PRK14041 oxaloacetate decarbox 52.3 90 0.002 32.1 9.2 46 142-187 184-233 (467)
174 PRK09195 gatY tagatose-bisphos 51.4 2.2E+02 0.0049 27.1 11.6 125 44-179 89-229 (284)
175 COG1735 Php Predicted metal-de 51.2 2E+02 0.0043 27.7 10.5 25 357-381 290-314 (316)
176 PRK11840 bifunctional sulfur c 51.1 2.3E+02 0.0051 27.5 11.2 108 117-256 155-275 (326)
177 PRK07114 keto-hydroxyglutarate 51.0 2E+02 0.0043 26.4 13.7 114 38-183 26-140 (222)
178 PRK08091 ribulose-phosphate 3- 51.0 2E+02 0.0044 26.4 11.7 62 115-180 132-205 (228)
179 PRK08883 ribulose-phosphate 3- 49.5 2.1E+02 0.0045 26.1 11.2 62 115-181 120-194 (220)
180 PRK12737 gatY tagatose-bisphos 48.2 2.5E+02 0.0055 26.7 11.7 125 44-179 89-229 (284)
181 PRK09282 pyruvate carboxylase 48.1 1.2E+02 0.0026 32.3 9.6 129 41-187 98-234 (592)
182 PRK14040 oxaloacetate decarbox 47.3 1.3E+02 0.0029 31.9 9.8 47 142-188 186-236 (593)
183 COG0036 Rpe Pentose-5-phosphat 46.3 2.4E+02 0.0051 25.8 10.8 63 115-181 123-196 (220)
184 PF01081 Aldolase: KDPG and KH 43.4 2.4E+02 0.0053 25.2 12.1 111 38-183 19-129 (196)
185 PF01116 F_bP_aldolase: Fructo 43.4 1.9E+02 0.0041 27.6 9.4 123 44-178 88-231 (287)
186 COG0800 Eda 2-keto-3-deoxy-6-p 42.6 2.6E+02 0.0057 25.4 10.1 91 130-257 39-131 (211)
187 PRK12857 fructose-1,6-bisphosp 42.2 3.1E+02 0.0068 26.1 11.2 123 45-179 90-229 (284)
188 PRK12331 oxaloacetate decarbox 41.7 2.1E+02 0.0046 29.2 9.9 46 142-187 185-234 (448)
189 PF07908 D-aminoacyl_C: D-amin 41.5 27 0.00059 23.5 2.4 15 403-417 18-32 (48)
190 TIGR01108 oadA oxaloacetate de 40.4 2E+02 0.0044 30.4 9.9 47 142-188 180-230 (582)
191 PRK07709 fructose-bisphosphate 38.0 3.7E+02 0.0079 25.7 12.5 124 45-179 93-230 (285)
192 COG0352 ThiE Thiamine monophos 36.7 24 0.00051 32.1 2.0 44 213-256 79-128 (211)
193 KOG4549|consensus 36.6 78 0.0017 26.2 4.7 49 11-59 14-67 (144)
194 PRK09140 2-dehydro-3-deoxy-6-p 36.3 3.2E+02 0.007 24.6 11.3 90 130-257 36-129 (206)
195 PRK08392 hypothetical protein; 35.7 1.5E+02 0.0032 26.8 7.2 32 18-57 1-32 (215)
196 PF02811 PHP: PHP domain; Int 35.5 39 0.00085 28.8 3.2 34 18-57 1-34 (175)
197 TIGR03151 enACPred_II putative 35.2 4.1E+02 0.009 25.5 12.5 106 44-180 27-134 (307)
198 TIGR00167 cbbA ketose-bisphosp 35.2 4.1E+02 0.0088 25.4 11.4 125 44-179 92-233 (288)
199 TIGR01496 DHPS dihydropteroate 34.4 53 0.0011 30.8 4.1 40 143-184 64-104 (257)
200 TIGR03849 arch_ComA phosphosul 33.2 1.6E+02 0.0034 27.4 6.7 46 115-161 12-62 (237)
201 PRK14057 epimerase; Provisiona 33.1 4.2E+02 0.009 24.9 10.7 63 115-181 146-220 (254)
202 PRK07998 gatY putative fructos 32.0 4.6E+02 0.0099 25.0 12.2 125 45-180 90-227 (283)
203 PRK12656 fructose-6-phosphate 30.4 2.2E+02 0.0048 26.1 7.2 44 142-186 94-137 (222)
204 PRK08005 epimerase; Validated 28.5 4.5E+02 0.0097 23.8 11.5 63 115-181 120-190 (210)
205 PRK08610 fructose-bisphosphate 28.4 5.3E+02 0.011 24.6 12.5 124 45-179 93-230 (286)
206 TIGR01302 IMP_dehydrog inosine 27.9 1.8E+02 0.004 29.6 7.0 62 116-180 228-291 (450)
207 PTZ00314 inosine-5'-monophosph 27.4 2E+02 0.0044 29.8 7.2 40 140-180 267-308 (495)
208 PF04131 NanE: Putative N-acet 25.8 1.6E+02 0.0036 26.2 5.3 37 143-180 134-171 (192)
209 COG0191 Fba Fructose/tagatose 25.5 2.5E+02 0.0054 26.8 6.8 129 42-179 88-231 (286)
210 TIGR00875 fsa_talC_mipB fructo 25.1 1.4E+02 0.0031 27.1 5.0 43 143-186 91-133 (213)
211 PRK01362 putative translaldola 25.1 1.3E+02 0.0028 27.4 4.8 43 143-186 91-133 (214)
212 PF15581 Imm35: Immunity prote 24.6 2.7E+02 0.0059 21.4 5.5 50 358-415 42-91 (93)
213 PF03060 NMO: Nitronate monoox 24.5 3.7E+02 0.008 26.1 8.2 37 143-181 126-162 (330)
214 cd00439 Transaldolase Transald 24.0 1.5E+02 0.0031 27.8 5.0 44 143-187 129-172 (252)
215 cd04729 NanE N-acetylmannosami 24.0 5.3E+02 0.011 23.1 11.5 38 141-180 110-148 (219)
216 PF09370 TIM-br_sig_trns: TIM- 23.9 1.2E+02 0.0027 28.5 4.4 37 143-181 140-176 (268)
217 PTZ00411 transaldolase-like pr 23.6 3.1E+02 0.0067 26.8 7.3 53 135-189 143-195 (333)
218 TIGR01303 IMP_DH_rel_1 IMP deh 23.5 2.5E+02 0.0055 28.9 7.1 40 140-180 251-292 (475)
219 PRK09722 allulose-6-phosphate 23.5 5.8E+02 0.013 23.4 12.2 63 115-181 122-196 (229)
220 COG0036 Rpe Pentose-5-phosphat 22.8 2.8E+02 0.0061 25.3 6.4 65 112-181 72-137 (220)
221 PRK07807 inosine 5-monophospha 22.7 2.8E+02 0.0061 28.6 7.2 40 140-180 253-294 (479)
222 KOG2902|consensus 22.7 3.6E+02 0.0079 25.1 7.0 14 14-27 7-20 (344)
223 PRK09875 putative hydrolase; P 22.5 2.1E+02 0.0045 27.4 5.9 44 16-59 7-54 (292)
224 PF02679 ComA: (2R)-phospho-3- 22.4 1.6E+02 0.0034 27.5 4.8 68 115-183 25-105 (244)
225 cd00957 Transaldolase_TalAB Tr 22.0 1.6E+02 0.0034 28.6 4.9 53 135-189 131-183 (313)
226 cd08556 GDPD Glycerophosphodie 21.9 2E+02 0.0043 24.7 5.3 37 143-180 150-186 (189)
227 PRK12346 transaldolase A; Prov 21.7 1.9E+02 0.0041 28.1 5.4 53 135-189 132-184 (316)
228 cd08582 GDPD_like_2 Glyceropho 21.2 1.9E+02 0.0041 26.3 5.2 37 143-180 191-227 (233)
229 TIGR00874 talAB transaldolase. 21.1 1.7E+02 0.0037 28.4 4.9 50 138-189 134-183 (317)
230 PF12690 BsuPI: Intracellular 20.7 53 0.0012 24.9 1.2 26 388-413 20-45 (82)
231 cd00947 TBP_aldolase_IIB Tagat 20.7 7.3E+02 0.016 23.5 12.0 123 45-179 85-223 (276)
232 cd07937 DRE_TIM_PC_TC_5S Pyruv 20.5 7.1E+02 0.015 23.4 10.2 132 39-186 91-228 (275)
233 PRK06843 inosine 5-monophospha 20.1 3.5E+02 0.0077 27.2 7.1 64 115-181 156-221 (404)
No 1
>COG1820 NagA N-acetylglucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=8.6e-75 Score=551.44 Aligned_cols=341 Identities=40% Similarity=0.636 Sum_probs=313.5
Q ss_pred CCeEEeCCCCEeeccchhhcccCCCCCCCCCCCCCcHHHHHHHHHHHHhCCceeeeeccCCCCHHHHHHHHHHHHcCCCC
Q psy12256 2 ADFRFDCGGKLIAPGFIDIQINGGFGVDFSHDIDSVDKNVSIVARGILAHGVTSFCPTLVTSEPQVYKKVLSRLRKTPGG 81 (417)
Q Consensus 2 ~~~vID~~G~~v~PG~ID~H~H~~~g~~~~~~~~~~~~~~~~~~~~~~~~GvTt~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (417)
..++||.+|.+|+|||||+|+||++|.+|++.. ..++++++++.++++|||+|+||.+|.+.+.+.++++++++++.
T Consensus 39 ~~e~id~~G~~l~PGfID~hihG~gG~~~~D~~--~~~~l~~i~~~~~~~GtTsfLpT~iT~~~e~i~~al~~~~e~~~- 115 (380)
T COG1820 39 DAEIIDLKGALLVPGFIDLHIHGGGGADFMDAG--SVETLETMAEAHLRHGTTSFLPTLITASLEKIKAALRAIREAIA- 115 (380)
T ss_pred cceeecCCCCEecccEEEEeecCcCcccccCcc--CHHHHHHHHHHhhhcCeeeeeeecccCCHHHHHHHHHHHHHHHh-
Confidence 368999999999999999999999999998732 37789999999999999999999999999999999999998875
Q ss_pred CCCceeEEeeeeCCCCCCCCCCCCCCcccCCCc-HHHHHHHHHhCCCCCEEEEEecCCCCChHHHHHHHHHCCCeeeecC
Q psy12256 82 KHGATVLGAHVEGPFISPDKKGAHSLSKIVTFD-KGFDSVREVYGNLSNIAIITLAPELAGSMEVIDKLVEQGITVSLGH 160 (417)
Q Consensus 82 ~~~~~~~G~~leGp~~~~~~~G~~~~~~~~~~~-~~~~~~~~~~g~~~~ik~~~~~pe~~~~~~~i~~~~~~gi~v~~GH 160 (417)
..++.++|+||||||+|+.++|+|++++++.|+ +++++|++.+++ .|+++|++||.++..++++.+.++|+++|+||
T Consensus 116 ~~ga~ilGiHLEGP~ls~~kkGAh~~~~ir~~~~~~~~~~~~~a~g--~i~~vTlAPE~~~~~e~i~~l~~~giivs~GH 193 (380)
T COG1820 116 KGGAQILGIHLEGPFLSPEKKGAHNPEYIRPPDPEELEQLIAAADG--LIKLVTLAPELDGTKELIRLLANAGIVVSIGH 193 (380)
T ss_pred ccCCceEEEEeecCccCHhhccCCCHHHhCCCCHHHHHHHHhhccC--ceEEEEECCCCCCCHHHHHHHHhCCeEEEecC
Confidence 577899999999999999999999999999999 899999998653 58999999999988999999999999999999
Q ss_pred CcCCHHHHHHHHHCCCCeEeeCCCCcccccccCCceEEeecCCCCCCCceEEEEecCCCcCCHHHHHHHHhhCCCCCCCC
Q psy12256 161 SSADINIAEEAVRHGASLITHLFNAMLPFHHRDPGIIGLLSSDNIDSSKVYYGIIADGVHTHPSALRIANSTHPEGHSSA 240 (417)
Q Consensus 161 ~~~~~~~~~~a~~~G~~~i~Hl~~~~~~~~~r~~g~~~~~~~~~l~~~~~~~~~i~dg~h~~~~~~~~~~~~~~~~h~~~ 240 (417)
|+++|+++++++++|++++||+||+|++++||+||++++++.. +++|||+||||+||||..++++++.+...+
T Consensus 194 S~Atye~~~~a~~~Ga~~~THlfNaMs~l~hREPGvvGA~L~~----~~~~~eiIaDG~HVhP~~~~ia~~~kg~~~--- 266 (380)
T COG1820 194 SNATYEQARAAFEAGATFVTHLFNAMSGLHHREPGVVGAALDN----PDVYAEIIADGVHVHPAAIRLALKAKGGDK--- 266 (380)
T ss_pred ccccHHHHHHHHHhCccEEEeeccCCCCCCCCCCcccceeecC----CCeEEEEEccCcccCHHHHHHHHhccCCce---
Confidence 9999999999999999999999999999999999999998653 579999999999999999999999985444
Q ss_pred CHHHHHHHHHccceeeeccccccCCCCCCCCccccccccccccCCcceeeeeCCceeeChHHHHHHHhcCCCCeEEeeCC
Q psy12256 241 DIHIAEEAVRHGASLITHLFNAMLPFHHRDPGIIGLLSSDNIDSSKVYYGIIADGVHTHPSALRIANSTHPEGSITPFNG 320 (417)
Q Consensus 241 ~~e~~~~a~~~g~~~~td~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~i~dg~~~~~~~l~~~~~~~~~~~~~~~d~ 320 (417)
+.++||++.+. |+ +||.+..... .+.+.||
T Consensus 267 ------------i~LVTDam~a~-----------G~----------------~dg~y~lgg~-----------~V~v~~g 296 (380)
T COG1820 267 ------------IVLVTDAMAAA-----------GL----------------PDGEYILGGQ-----------TVTVADG 296 (380)
T ss_pred ------------EEEEEcccccc-----------CC----------------CCccEEECCE-----------EEEEECC
Confidence 37899999877 77 7887766554 6788888
Q ss_pred eeeeeeecccccceeeCCCCCCCCCCCchhHHHHHhhhccCCCHHHHHHHHhHHHHHHcCCCCCccccccCCCccEEEEc
Q psy12256 321 CVQFFMRSTRCSLWFDLGNCNNGGSITPFNGCVQFFMRSTRCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILD 400 (417)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~l~~~t~~pA~~l~l~~~~G~l~~G~~ADlvv~d 400 (417)
.+ ...+|+++||.++|...+++++++.+++++||++|+|+|||+.+|+.+++|+|++|++||||++|
T Consensus 297 ~~-------------~~~~GtLAGS~Ltm~~avrn~v~~~~~~~~eAv~maS~~PA~~lgl~~~~G~i~~G~~Adlvvld 363 (380)
T COG1820 297 AR-------------RLEDGTLAGSTLTMDEAVRNLVEWGGISLAEAVRMASLNPAKALGLDDRLGSIKPGKDADLVVLD 363 (380)
T ss_pred EE-------------ECCCCceeeeeeeHHHHHHHHHHHhCCCHHHHHHHhhhhHHHHhCCcCcccccCCCcccCEEEEC
Confidence 54 46899999999999999999999999999999999999999999999888999999999999999
Q ss_pred CCCceeEEEECCEEecC
Q psy12256 401 EGLHVYSTWIAGDLKLT 417 (417)
Q Consensus 401 ~~~~v~~v~~~G~~v~~ 417 (417)
.|.+|..||++|++++.
T Consensus 364 ~d~~v~~T~i~G~~~~~ 380 (380)
T COG1820 364 DDLNVKATWINGEKVFN 380 (380)
T ss_pred CCCcEEEEEECCEEeeC
Confidence 99999999999999873
No 2
>TIGR00221 nagA N-acetylglucosamine-6-phosphate deacetylase.
Probab=100.00 E-value=5.3e-68 Score=522.11 Aligned_cols=336 Identities=36% Similarity=0.566 Sum_probs=302.1
Q ss_pred CeEEeCCCCEeeccchhhcccCCCCCCCCCCCCCcHHHHHHHHHHHHhCCceeeeeccCCCCHHHHHHHHHHHHcCCCCC
Q psy12256 3 DFRFDCGGKLIAPGFIDIQINGGFGVDFSHDIDSVDKNVSIVARGILAHGVTSFCPTLVTSEPQVYKKVLSRLRKTPGGK 82 (417)
Q Consensus 3 ~~vID~~G~~v~PG~ID~H~H~~~g~~~~~~~~~~~~~~~~~~~~~~~~GvTt~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (417)
.++||++|+||+|||||+|+|+++|.++++. +.++++++++.++++|||||++|.++.+.+.+.++++.+.+..+..
T Consensus 44 ~~viD~~G~~i~PGfID~HvHg~~g~~~~~~---~~e~~~~~~~~~~~~GvTt~l~t~~t~~~~~~~~~l~~~~~~~~~~ 120 (380)
T TIGR00221 44 IKEIDLPGNVLTPGFIDIHIHGCGGVDTNDA---SFETLEIMSERLPKSGCTSFLPTLITQPDENIKQAVKNMREYLAKE 120 (380)
T ss_pred CeEEECCCCEEccceeeeeeccccCcCCCCC---CHHHHHHHHHHHHhcCeeEEeeeccCCCHHHHHHHHHHHHHHHhcc
Confidence 3789999999999999999999888887643 3688999999999999999999999999999999999887764333
Q ss_pred CCceeEEeeeeCCCCCCCCCCCCCCcccCCCc-HHHHHHHHHhCCCCCEEEEEecCCCCChHHHHHHHHHCCCeeeecCC
Q psy12256 83 HGATVLGAHVEGPFISPDKKGAHSLSKIVTFD-KGFDSVREVYGNLSNIAIITLAPELAGSMEVIDKLVEQGITVSLGHS 161 (417)
Q Consensus 83 ~~~~~~G~~leGp~~~~~~~G~~~~~~~~~~~-~~~~~~~~~~g~~~~ik~~~~~pe~~~~~~~i~~~~~~gi~v~~GH~ 161 (417)
.++.++|+|+||||+|+.++|+|++++++.|+ +++++|.+.++ +.+|+||++||+++..++|+++.++|++||+|||
T Consensus 121 ~~a~~lG~HlEGPfi~~~~~Gah~~~~i~~p~~~~~~~~~~~~~--~~i~~vTlAPE~~~~~~~i~~l~~~gi~vs~GHs 198 (380)
T TIGR00221 121 KNAQALGLHLEGPFLSPEKKGAHPPEYIREPDVELFKKFLCEAG--GVITKVTLAPEEDQHFELIRHLKDAGIIVSAGHT 198 (380)
T ss_pred CCceeeeEeeecCcCChhhcCCCCHHHhhCcCHHHHHHHHHhcC--CCEEEEEECCCCCChHHHHHHHHHCCeEEEeeCC
Confidence 56789999999999999999999999999999 89999998754 4699999999999889999999999999999999
Q ss_pred cCCHHHHHHHHHCCCCeEeeCCCCcccccccCCceEEeecCCCCCCCceEEEEecCCCcCCHHHHHHHHhhCCCCCCCCC
Q psy12256 162 SADINIAEEAVRHGASLITHLFNAMLPFHHRDPGIIGLLSSDNIDSSKVYYGIIADGVHTHPSALRIANSTHPEGHSSAD 241 (417)
Q Consensus 162 ~~~~~~~~~a~~~G~~~i~Hl~~~~~~~~~r~~g~~~~~~~~~l~~~~~~~~~i~dg~h~~~~~~~~~~~~~~~~h~~~~ 241 (417)
+++|+++.+|+++|++.+||+||+|++++||+||++++++.. +.++||+|+||+||+|++++++++.+...+
T Consensus 199 ~A~~~~~~~a~~~Ga~~~THlfNaM~~~~hR~pg~vga~l~~----~~~~~elI~Dg~Hv~p~~~~~~~r~kg~~~---- 270 (380)
T TIGR00221 199 NATYELAKAAFKAGATHATHLYNAMSPIHHREPGVIGAVLDH----DDVYTEIIADGIHIHPLNIRLAKKLKGDSK---- 270 (380)
T ss_pred CCCHHHHHHHHHcCCCeeeeeccCCCCcCCCCCcHHHHHhcC----CCcEEEEEcCCCcCCHHHHHHHHHhcCCCc----
Confidence 999999999999999999999999999999999999987643 478999999999999999999999986444
Q ss_pred HHHHHHHHHccceeeeccccccCCCCCCCCccccccccccccCCcceeeeeCCceeeChHHHHHHHhcCCCCeEEeeCCe
Q psy12256 242 IHIAEEAVRHGASLITHLFNAMLPFHHRDPGIIGLLSSDNIDSSKVYYGIIADGVHTHPSALRIANSTHPEGSITPFNGC 321 (417)
Q Consensus 242 ~e~~~~a~~~g~~~~td~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~i~dg~~~~~~~l~~~~~~~~~~~~~~~d~~ 321 (417)
+.++||++.+. |+ ++|.|.+... .+.+.|+.
T Consensus 271 -----------~~lvtDa~~~~-----------g~----------------~~G~y~l~~~-----------~v~~~~g~ 301 (380)
T TIGR00221 271 -----------LCLVTDSMAAA-----------GA----------------KDGVFIFGGK-----------TVYIREGT 301 (380)
T ss_pred -----------EEEEecccccc-----------CC----------------CCceEeECCE-----------EEEEECCE
Confidence 27899998776 55 6777765443 67778887
Q ss_pred eeeeeecccccceeeCCCCCCCCCCCchhHHHHHhhhccCCCHHHHHHHHhHHHHHHcCCCCCccccccCCCccEEEEcC
Q psy12256 322 VQFFMRSTRCSLWFDLGNCNNGGSITPFNGCVQFFMRSTRCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILDE 401 (417)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~l~~~t~~pA~~l~l~~~~G~l~~G~~ADlvv~d~ 401 (417)
+ ++ .+|+++||..+|.+.+++++++.+++++++++|+|.|||+++|+++++|+|++|+.|||+++|+
T Consensus 302 ~------------~~-~~g~LAGs~ltl~~~v~~l~~~~~~~~~eal~~aT~npA~~lgl~~~~G~i~~G~~ADlvv~d~ 368 (380)
T TIGR00221 302 C------------LD-SNGTLAGSSLTMIEGARNLVEFTNISLTDAARMSSLNPARALGIDDRLGSVTVGKDANLVVFTP 368 (380)
T ss_pred E------------Ec-CCCceechhhhHHHHHHHHHHhhCCCHHHHHHHHhHHHHHHhCCCCCCcccCCCCcCCEEEECC
Confidence 6 44 5689999999999999999998889999999999999999999986579999999999999999
Q ss_pred CCceeEEEECCE
Q psy12256 402 GLHVYSTWIAGD 413 (417)
Q Consensus 402 ~~~v~~v~~~G~ 413 (417)
+.+|..||++|+
T Consensus 369 ~~~v~~t~~~G~ 380 (380)
T TIGR00221 369 DFEVILTIVNGN 380 (380)
T ss_pred CCCEEEEEeCCC
Confidence 999999999995
No 3
>PRK11170 nagA N-acetylglucosamine-6-phosphate deacetylase; Provisional
Probab=100.00 E-value=5.1e-67 Score=516.45 Aligned_cols=339 Identities=32% Similarity=0.483 Sum_probs=301.1
Q ss_pred CeEEeCCCCEeeccchhhcccCCCCCCCCCCC-CCcHHHHHHHHHHHHhCCceeeeeccCCCCHHHHHHHHHHHHcCCCC
Q psy12256 3 DFRFDCGGKLIAPGFIDIQINGGFGVDFSHDI-DSVDKNVSIVARGILAHGVTSFCPTLVTSEPQVYKKVLSRLRKTPGG 81 (417)
Q Consensus 3 ~~vID~~G~~v~PG~ID~H~H~~~g~~~~~~~-~~~~~~~~~~~~~~~~~GvTt~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (417)
.++||++|+||+|||||+|+|+++|.++++.. ....++++.+++.++++|||+|+||.++.+.+.+.++++.+++..+.
T Consensus 41 ~~~ID~~G~~l~PG~ID~HvHG~~g~~~~~~~~~~~~~~l~~~~~~~~~~GvTt~lpT~it~~~~~~~~~l~~~~~~~~~ 120 (382)
T PRK11170 41 IEQRDLNGAILSPGFIDLQLNGCGGVQFNDTAEAISVETLEIMQKANEKSGCTSFLPTLITSSDELMKQAVRVMREYLAK 120 (382)
T ss_pred CeEEeCCCCEEccceeeeeecCccCcccccCccCCCHHHHHHHHHHHHhcCEeEEeeeccCCCHHHHHHHHHHHHHHHhc
Confidence 36899999999999999999998888876421 12467899999999999999999999999999999999888775432
Q ss_pred CCCceeEEeeeeCCCCCCCCCCCCCCcccCCCc-HHHHHHHHHhCCCCCEEEEEecCCCCChHHHHHHHHHCCCeeeecC
Q psy12256 82 KHGATVLGAHVEGPFISPDKKGAHSLSKIVTFD-KGFDSVREVYGNLSNIAIITLAPELAGSMEVIDKLVEQGITVSLGH 160 (417)
Q Consensus 82 ~~~~~~~G~~leGp~~~~~~~G~~~~~~~~~~~-~~~~~~~~~~g~~~~ik~~~~~pe~~~~~~~i~~~~~~gi~v~~GH 160 (417)
.+++++|+|+||||+|+.++|+|++++++.|+ ++++.|.+.. +.||+||++||.++ .++|++++++|+++|+||
T Consensus 121 -~~a~~~G~HlEGPfi~~~~~Gah~~~~~~~p~~~~~~~~~~~~---~~i~~iTlAPE~~~-~~~i~~l~~~gi~vs~GH 195 (382)
T PRK11170 121 -HPNQALGLHLEGPYLNLVKKGTHNPEFIRKPDAEMVDFLCENA---DVITKVTLAPEMVD-AEVIRKLVEAGIVVSAGH 195 (382)
T ss_pred -CCCeEEEEEeecCCCCcccCCCCCHHHhcCcCHHHHHHHHhcc---CCEEEEEECCCCCc-HHHHHHHHHCCcEEEeeC
Confidence 46789999999999999999999999999999 7888888763 36999999999765 599999999999999999
Q ss_pred CcCCHHHHHHHHHCCCCeEeeCCCCcccccccCCceEEeecCCCCCCCceEEEEecCCCcCCHHHHHHHHhhCCCCCCCC
Q psy12256 161 SSADINIAEEAVRHGASLITHLFNAMLPFHHRDPGIIGLLSSDNIDSSKVYYGIIADGVHTHPSALRIANSTHPEGHSSA 240 (417)
Q Consensus 161 ~~~~~~~~~~a~~~G~~~i~Hl~~~~~~~~~r~~g~~~~~~~~~l~~~~~~~~~i~dg~h~~~~~~~~~~~~~~~~h~~~ 240 (417)
|+++++++++|+++|++.+||+||+|++++||+||++++++.+ ++++||+||||+||+|++++++++.+. .+
T Consensus 196 s~A~~~~~~~a~~~Ga~~~THlfNaM~~~~hR~pg~vga~l~~----~~~~~elI~Dg~Hv~p~~~~~~~~~k~-~~--- 267 (382)
T PRK11170 196 SNATYEEAKAGFRAGITFATHLYNAMPYITGREPGLVGAILDE----PDVYCGIIADGLHVDYANIRNAKRLKG-DK--- 267 (382)
T ss_pred CcCCHHHHHHHHHcCCCEEeeccccCCcccCCCcchhhHhhcC----CCcEEEEEcCcccCCHHHHHHHHHhcC-Cc---
Confidence 9999999999999999999999999999999999999987643 478999999999999999999999986 44
Q ss_pred CHHHHHHHHHccceeeeccccccCCCCCCCCccccccccccccCCcceeeeeCCceeeChHHHHHHHhcCCCCeEEeeCC
Q psy12256 241 DIHIAEEAVRHGASLITHLFNAMLPFHHRDPGIIGLLSSDNIDSSKVYYGIIADGVHTHPSALRIANSTHPEGSITPFNG 320 (417)
Q Consensus 241 ~~e~~~~a~~~g~~~~td~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~i~dg~~~~~~~l~~~~~~~~~~~~~~~d~ 320 (417)
+.++||++.+. |+ ++|.|..... .+.++++
T Consensus 268 ------------~~lvtDa~~~~-----------G~----------------~~g~y~l~~~-----------~v~v~~g 297 (382)
T PRK11170 268 ------------LCLVTDATAPA-----------GA----------------NIEQFIFAGK-----------TIYYRDG 297 (382)
T ss_pred ------------EEEEeccccCC-----------CC----------------CCCeEEECCE-----------EEEEECC
Confidence 37899998776 55 6777655433 6777888
Q ss_pred eeeeeeecccccceeeCCCCCCCCCCCchhHHHHHhhhccCCCHHHHHHHHhHHHHHHcCCCCCccccccCCCccEEEEc
Q psy12256 321 CVQFFMRSTRCSLWFDLGNCNNGGSITPFNGCVQFFMRSTRCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILD 400 (417)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~l~~~t~~pA~~l~l~~~~G~l~~G~~ADlvv~d 400 (417)
.+ ++ .+|+++||..+|.+.+++++++.+++++++++|+|.|||+++|+++++|+|++|+.|||+++|
T Consensus 298 ~~------------~~-~~G~LAGs~l~l~~~v~~l~~~~~~~~~eal~~aT~npA~~lgl~~~~G~i~~G~~ADlvvld 364 (382)
T PRK11170 298 LC------------VD-ENGTLSGSALTMIEAVRNLVEHVGIALDEALRMATLYPARAIGVDKRLGSIEAGKVANLTAFT 364 (382)
T ss_pred EE------------EC-CCCcccccHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCCccccCCCCcCCEEEEC
Confidence 76 43 679999999999999999999889999999999999999999998767999999999999999
Q ss_pred CCCceeEEEECCEEecC
Q psy12256 401 EGLHVYSTWIAGDLKLT 417 (417)
Q Consensus 401 ~~~~v~~v~~~G~~v~~ 417 (417)
.+.++..||++|+++++
T Consensus 365 ~~~~v~~v~~~G~~~~~ 381 (382)
T PRK11170 365 RDFKITKTIVNGNEVVT 381 (382)
T ss_pred CCCcEEEEEECCEEeec
Confidence 99999999999999874
No 4
>KOG3892|consensus
Probab=100.00 E-value=4e-62 Score=434.88 Aligned_cols=351 Identities=57% Similarity=0.988 Sum_probs=317.8
Q ss_pred CCCeEEeCCCCEeeccchhhcccCCCCCCCCCCCCCcHHHHHHHHHHHHhCCceeeeeccCCCCHHHHHHHHHHHHcCCC
Q psy12256 1 MADFRFDCGGKLIAPGFIDIQINGGFGVDFSHDIDSVDKNVSIVARGILAHGVTSFCPTLVTSEPQVYKKVLSRLRKTPG 80 (417)
Q Consensus 1 ~~~~vID~~G~~v~PG~ID~H~H~~~g~~~~~~~~~~~~~~~~~~~~~~~~GvTt~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (417)
++++.||+.|+++.|||||+++++++|+||+..+..+.+.+...+++++++|||+|+||+++.|++.+-+.+..+.....
T Consensus 52 ~Ad~riDCgG~IlaPGfIDlQiNGGfGvDFS~dte~~~eGvAlVAr~ll~hGvtsf~Pt~~tsp~~~YHkilP~ip~~~~ 131 (407)
T KOG3892|consen 52 VADERIDCGGRILAPGFIDLQINGGFGVDFSQDTEDVGEGVALVARQLLSHGVTSFCPTLVTSPPEVYHKILPQIPVKSG 131 (407)
T ss_pred chhheeccCCeeecCceEEEEecCccccccccchhhhhhhHHHHHHHHHhcCCCcCCCccccCCchhhhhhccccccccC
Confidence 46789999999999999999999999999987666667888899999999999999999999999988888877765554
Q ss_pred CCCCceeEEeeeeCCCCCCCCCCCCCCcccCCCc-HHHHHHHHHhCCCCCEEEEEecCCCCChHHHHHHHHHCCCeeeec
Q psy12256 81 GKHGATVLGAHVEGPFISPDKKGAHSLSKIVTFD-KGFDSVREVYGNLSNIAIITLAPELAGSMEVIDKLVEQGITVSLG 159 (417)
Q Consensus 81 ~~~~~~~~G~~leGp~~~~~~~G~~~~~~~~~~~-~~~~~~~~~~g~~~~ik~~~~~pe~~~~~~~i~~~~~~gi~v~~G 159 (417)
...+..++|+|+||||||+.++|+|++..+++.+ +.++.+.+.||+...|+++|++||+.+..++|+.+.+.|+.|++|
T Consensus 132 ~p~GaG~LG~HlEGPFIs~~KrG~HPE~~i~s~~~~~~~~l~~tYGsleni~IvTlAPEl~~~~evi~~lv~~gitVslG 211 (407)
T KOG3892|consen 132 GPHGAGVLGLHLEGPFISREKRGAHPEAHIRSFEADAFQDLLATYGSLENIRIVTLAPELGGAQEVIRALVARGITVSLG 211 (407)
T ss_pred CCCccceeeeeccCCccChhhcCCCHHHHHhccCccHHHHHHHHhCCccceEEEEecccccCcHHHHHHHHhcceEEeec
Confidence 5678899999999999999999999999999988 679999999999999999999999988899999999999999999
Q ss_pred CCcCCHHHHHHHHHCCCCeEeeCCCCcccccccCCceEEeecCCCCCC-CceEEEEecCCCcCCHHHHHHHHhhCCCCCC
Q psy12256 160 HSSADINIAEEAVRHGASLITHLFNAMLPFHHRDPGIIGLLSSDNIDS-SKVYYGIIADGVHTHPSALRIANSTHPEGHS 238 (417)
Q Consensus 160 H~~~~~~~~~~a~~~G~~~i~Hl~~~~~~~~~r~~g~~~~~~~~~l~~-~~~~~~~i~dg~h~~~~~~~~~~~~~~~~h~ 238 (417)
|+.+++.....|+..|++.|||+||+|.++|||+||+++-+..++++. .-+|.++|+||+|-||.+++.+++..+.|
T Consensus 212 HS~A~L~~gE~AV~sGat~ITHLFNAMlpfHHRDPGlvGLLtSd~lp~gr~iyyGiIsDG~HThpaALRIAyrthpqG-- 289 (407)
T KOG3892|consen 212 HSVADLRAGEDAVWSGATFITHLFNAMLPFHHRDPGLVGLLTSDRLPAGRCIYYGIISDGTHTHPAALRIAYRTHPQG-- 289 (407)
T ss_pred cchhccCcHHHHHhccchHHHHHHHhccccccCCCceeEEeecCCCCCCCeEEEEEecCCccCChhHhhhhhhcCCCc--
Confidence 999888888899999999999999999999999999999887777763 34799999999999999999999875544
Q ss_pred CCCHHHHHHHHHccceeeeccccccCCCCCCCCccccccccccccCCcceeeeeCCceeeChHHHHHHHhcCCCCeEEee
Q psy12256 239 SADIHIAEEAVRHGASLITHLFNAMLPFHHRDPGIIGLLSSDNIDSSKVYYGIIADGVHTHPSALRIANSTHPEGSITPF 318 (417)
Q Consensus 239 ~~~~e~~~~a~~~g~~~~td~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~i~dg~~~~~~~l~~~~~~~~~~~~~~~ 318 (417)
..++||++.+. |+ .+|+|..... .+-++
T Consensus 290 --------------LvLVTDAI~AL-----------Gl----------------~~GvH~lGqq-----------~v~Vk 317 (407)
T KOG3892|consen 290 --------------LVLVTDAIPAL-----------GL----------------GNGVHTLGQQ-----------EVEVK 317 (407)
T ss_pred --------------eEEEecchhhc-----------cc----------------ccccccccce-----------eEEEc
Confidence 48999998877 66 7888876543 45555
Q ss_pred CCeeeeeeecccccceeeCCCCCCCCCCCchhHHHHHhhhccCCCHHHHHHHHhHHHHHHcCCCCCccccccCCCccEEE
Q psy12256 319 NGCVQFFMRSTRCSLWFDLGNCNNGGSITPFNGCVQFFMRSTRCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVI 398 (417)
Q Consensus 319 d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~l~~~t~~pA~~l~l~~~~G~l~~G~~ADlvv 398 (417)
...+ ++.++.+++||...|...++.+.+..|.|.+-|++.+|..||+.||+++.+|+|..|.+||||+
T Consensus 318 gl~A------------~~aGT~Tl~GSiApMd~CvRhf~kATgCs~e~AleaAtlhPAqlLg~ek~KGTLDfG~dADFVl 385 (407)
T KOG3892|consen 318 GLTA------------YVAGTKTLSGSIAPMDVCVRHFLKATGCSMESALEAATLHPAQLLGLEKSKGTLDFGADADFVL 385 (407)
T ss_pred ceEE------------EeeccccccccccCcHHHHHHHHHhcCCcHHHHHhhhccChHHhhccccccccccccccCceEE
Confidence 5555 6789999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCceeEEEECCEEecC
Q psy12256 399 LDEGLHVYSTWIAGDLKLT 417 (417)
Q Consensus 399 ~d~~~~v~~v~~~G~~v~~ 417 (417)
+|.+..|+.||+.|++||.
T Consensus 386 lDd~l~V~aT~isG~~V~~ 404 (407)
T KOG3892|consen 386 LDDSLHVQATYISGELVWQ 404 (407)
T ss_pred EccceEEEEEEEccEEEEe
Confidence 9999999999999999973
No 5
>cd00854 NagA N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate. This is the first committed step in the biosynthetic pathway to amino-sugar-nucleotides, which is needed for cell wall peptidoglycan and teichoic acid biosynthesis. Deacetylation of N-acetylglucosamine is also important in lipopolysaccharide synthesis and cell wall recycling.
Probab=100.00 E-value=2.7e-56 Score=441.83 Aligned_cols=335 Identities=42% Similarity=0.682 Sum_probs=290.2
Q ss_pred CeEEeCCCCEeeccchhhcccCCCCCCCCCCCCCcHHHHHHHHHHHHhCCceeeeeccCCCCHHHHHHHHHHHHcCCCCC
Q psy12256 3 DFRFDCGGKLIAPGFIDIQINGGFGVDFSHDIDSVDKNVSIVARGILAHGVTSFCPTLVTSEPQVYKKVLSRLRKTPGGK 82 (417)
Q Consensus 3 ~~vID~~G~~v~PG~ID~H~H~~~g~~~~~~~~~~~~~~~~~~~~~~~~GvTt~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (417)
.++||++|+||+|||||+|+|++++.+++..+ .++++..++.++++||||+++|.++.+.+.+.+.+..+++..+..
T Consensus 39 ~~vid~~g~~l~PG~iD~H~H~~~g~~~~~~~---~e~~~~~~~~~~~~GvTtv~~t~~t~~~~~~~~~l~~~~~~~~~~ 115 (374)
T cd00854 39 DEIIDLKGQYLVPGFIDIHIHGGGGADFMDGT---AEALKTIAEALAKHGTTSFLPTTVTAPPEEIAKALAAIAEAIAEG 115 (374)
T ss_pred CcEEECCCCEecccEEEeeecccCCCCCCCCC---HHHHHHHHHHHHccCcceeeccccCCCHHHHHHHHHHHHHHhhcC
Confidence 47899999999999999999998877775432 688999999999999999999999999998888888887765322
Q ss_pred CCceeEEeeeeCCCCCCCCCCCCCCcccCCCc-HHHHHHHHHhCCCCCEEEEEecCCCCChHHHHHHHHHCCCeeeecCC
Q psy12256 83 HGATVLGAHVEGPFISPDKKGAHSLSKIVTFD-KGFDSVREVYGNLSNIAIITLAPELAGSMEVIDKLVEQGITVSLGHS 161 (417)
Q Consensus 83 ~~~~~~G~~leGp~~~~~~~G~~~~~~~~~~~-~~~~~~~~~~g~~~~ik~~~~~pe~~~~~~~i~~~~~~gi~v~~GH~ 161 (417)
.+++++|+|+||||+++.++|+|+++.++.|+ ++++++.+... +.||+++++||+++..+++++++++|+++++||+
T Consensus 116 ~g~~~~g~hleGP~~~~~~~g~h~~~~~~~~~~~~~~~~~~~~~--~~ik~~tlaPE~~~~~~~i~~~~~~gi~v~~GH~ 193 (374)
T cd00854 116 QGAEILGIHLEGPFISPEKKGAHPPEYLRAPDPEELKKWLEAAG--GLIKLVTLAPELDGALELIRYLVERGIIVSIGHS 193 (374)
T ss_pred CCCeeEEEeeecCccCcccCCCCCHHHcCCcCHHHHHHHHHhcC--CCEEEEEECCCCCChHHHHHHHHHCCeEEEeeCC
Confidence 26799999999999999999999998888888 78888888643 6799999999998888999999999999999999
Q ss_pred cCCHHHHHHHHHCCCCeEeeCCCCcccccccCCceEEeecCCCCCCCceEEEEecCCCcCCHHHHHHHHhhCCCCCCCCC
Q psy12256 162 SADINIAEEAVRHGASLITHLFNAMLPFHHRDPGIIGLLSSDNIDSSKVYYGIIADGVHTHPSALRIANSTHPEGHSSAD 241 (417)
Q Consensus 162 ~~~~~~~~~a~~~G~~~i~Hl~~~~~~~~~r~~g~~~~~~~~~l~~~~~~~~~i~dg~h~~~~~~~~~~~~~~~~h~~~~ 241 (417)
+++++++++++++|++.+||++|+|++++||+||.+++++.. +.+++|+|+||+|++|+.++++.+++...+
T Consensus 194 ~a~~~~~~~a~~~G~~~~tH~~n~m~~~~~r~~~~~~a~l~~----~~~~~~li~dg~Hv~~~~~~~~~r~~g~~~---- 265 (374)
T cd00854 194 DATYEQAVAAFEAGATHVTHLFNAMSPLHHREPGVVGAALSD----DDVYAELIADGIHVHPAAVRLAYRAKGADK---- 265 (374)
T ss_pred cCCHHHHHHHHHcCCCeeeECCCCCCCcCCCCCcHHHHhhcC----CCCeEEEEcCCCcCCHHHHHHHHHhcCCCc----
Confidence 988999999999999999999999999999999999877542 468999999999999999999999875444
Q ss_pred HHHHHHHHHccceeeeccccccCCCCCCCCccccccccccccCCcceeeeeCCceeeChHHHHHHHhcCCCCeEEeeCCe
Q psy12256 242 IHIAEEAVRHGASLITHLFNAMLPFHHRDPGIIGLLSSDNIDSSKVYYGIIADGVHTHPSALRIANSTHPEGSITPFNGC 321 (417)
Q Consensus 242 ~e~~~~a~~~g~~~~td~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~i~dg~~~~~~~l~~~~~~~~~~~~~~~d~~ 321 (417)
+.++||++... |+ ++|.|..... .+.+.++.
T Consensus 266 -----------~~lvtD~~~~~-----------G~----------------~~g~y~~~~~-----------~~~~~~~~ 296 (374)
T cd00854 266 -----------IVLVTDAMAAA-----------GL----------------PDGEYELGGQ-----------TVTVKDGV 296 (374)
T ss_pred -----------EEEEecccccc-----------CC----------------CCCeEEECCE-----------EEEEECCE
Confidence 26799987654 44 4555543322 34455555
Q ss_pred eeeeeecccccceeeCCCCCCCCCCCchhHHHHHhhhccCCCHHHHHHHHhHHHHHHcCCCCCccccccCCCccEEEEcC
Q psy12256 322 VQFFMRSTRCSLWFDLGNCNNGGSITPFNGCVQFFMRSTRCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILDE 401 (417)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~l~~~t~~pA~~l~l~~~~G~l~~G~~ADlvv~d~ 401 (417)
+ ++ .+|+++|+..+|.+.+++++++.++++.++++|+|.|||+++|++++.|.|++|+.|||+++|.
T Consensus 297 ~------------~~-~~g~laG~~~~l~~~~~~l~~~~~l~~~~al~~aT~npA~~lg~~~~~G~i~~G~~ADlvv~d~ 363 (374)
T cd00854 297 A------------RL-ADGTLAGSTLTMDQAVRNMVKWGGCPLEEAVRMASLNPAKLLGLDDRKGSLKPGKDADLVVLDD 363 (374)
T ss_pred E------------Ec-CCCCeeehHhhHHHHHHHHHHhhCCCHHHHHHHHhHHHHHHcCCCCCcCCcCCCCcCCEEEECC
Confidence 4 33 5789999999999999999998789999999999999999999986689999999999999999
Q ss_pred CCceeEEEECC
Q psy12256 402 GLHVYSTWIAG 412 (417)
Q Consensus 402 ~~~v~~v~~~G 412 (417)
+.+|..||++|
T Consensus 364 ~~~v~~~~~~G 374 (374)
T cd00854 364 DLNVKATWING 374 (374)
T ss_pred CCcEEEEEeCc
Confidence 99999999987
No 6
>TIGR03583 EF_0837 probable amidohydrolase EF_0837/AHA_3915. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. These proteins resemble aminohydrolases (see pfam01979), including dihydroorotases. The function is unknown.
Probab=99.96 E-value=4.2e-28 Score=240.10 Aligned_cols=292 Identities=17% Similarity=0.218 Sum_probs=191.8
Q ss_pred CeEEeCCC-CEeeccchhhcccCCCCCCCCCCCCCcHHHHHHHHHHHHhCCceeeeeccC--CCCHHHHHHHHHHHHcCC
Q psy12256 3 DFRFDCGG-KLIAPGFIDIQINGGFGVDFSHDIDSVDKNVSIVARGILAHGVTSFCPTLV--TSEPQVYKKVLSRLRKTP 79 (417)
Q Consensus 3 ~~vID~~G-~~v~PG~ID~H~H~~~g~~~~~~~~~~~~~~~~~~~~~~~~GvTt~~~~~~--~~~~~~~~~~~~~~~~~~ 79 (417)
.++||++| +||+|||||+|+|++.+..+...+ .. +..+++|||+++++.. +.+.+.+.+ ..++..
T Consensus 37 ~~~iD~~g~~~l~PG~ID~H~H~~~~~~~~~~~------~~---~~a~~~GvTt~~~~~~~~~~~~~~~~~---~~~~~~ 104 (365)
T TIGR03583 37 KQTIDLEGETYVSAGWIDDHTHCFPKSALYYDE------PD---EIGVKTGVTTVVDAGSTGADDIDDFYR---LAQQAK 104 (365)
T ss_pred CeEEECCCCeEEecCEEEeeeccCCCcccccCC------Hh---HhhhcCceeEEEeCCCCCCCCHHHHHH---HHHhhC
Confidence 47899999 999999999999987543322211 11 2357899999998653 333333333 222221
Q ss_pred CCCCCceeEEeeeeCCCCCCCCCCCCCCc---ccCCCc-HHHHHHHHHhCC--CCCEEEEEec--CCCC-ChHHHHHHHH
Q psy12256 80 GGKHGATVLGAHVEGPFISPDKKGAHSLS---KIVTFD-KGFDSVREVYGN--LSNIAIITLA--PELA-GSMEVIDKLV 150 (417)
Q Consensus 80 ~~~~~~~~~G~~leGp~~~~~~~G~~~~~---~~~~~~-~~~~~~~~~~g~--~~~ik~~~~~--pe~~-~~~~~i~~~~ 150 (417)
.++++ +++..+.|.+++. .++.++ ++++++.+.+.. .++.++|+.+ ||.- ...+..+++.
T Consensus 105 -----~~v~~------~~~~~~~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~vv~~~~~~t~~~i~E~gl~~~~~~~~l~ 173 (365)
T TIGR03583 105 -----TNVFA------LLNISRIGLVAQDELADLSNLDASAVKQAVERYPDFIVGLKARMSKSVVGDNGIEPLEIAKQIQ 173 (365)
T ss_pred -----CcEEE------EeeehhccccChhhhhChHHhHHHHHHHHHHhCcCcEEEEEEeecccccccCCcCHHHHHHHHH
Confidence 24444 3444556765432 334445 566666664331 0112455543 5631 1334555555
Q ss_pred HCC----CeeeecCCcCCHHHHHHHHHCCCCeEeeCCCCcccccccCCceEEeecCCCCCCCceEEEEecCCC-cCCHHH
Q psy12256 151 EQG----ITVSLGHSSADINIAEEAVRHGASLITHLFNAMLPFHHRDPGIIGLLSSDNIDSSKVYYGIIADGV-HTHPSA 225 (417)
Q Consensus 151 ~~g----i~v~~GH~~~~~~~~~~a~~~G~~~i~Hl~~~~~~~~~r~~g~~~~~~~~~l~~~~~~~~~i~dg~-h~~~~~ 225 (417)
+.+ +.++++|+..+++++.+++..| +.++|+||+|+++++|++|.++..+.+ .+.+++|+|+. |+.+..
T Consensus 174 ~~~~~~pv~vH~~~a~~~~~~i~~~~~~g-~~~~H~fng~~~~~~r~~g~~~~~~~~-----~l~~G~i~d~~hg~~~~~ 247 (365)
T TIGR03583 174 QENLELPLMVHIGSAPPELDEILALMEKG-DVLTHCFNGKPNGILRETGEVKPSVLE-----AYNRGVILDVGHGTASFS 247 (365)
T ss_pred HhcCCCcEEEEeCCCccCHHHHHHHhcCC-CeeeeeecCCCCCCCCCcchHHHHHHH-----HHhCeEEEEeCCCCCCch
Confidence 543 6677778877889999888888 789999999999999999998765542 45678888854 465555
Q ss_pred HHHHHhhCCCCCCCCCHHHHHHHHHccceeeeccccccCCCCCCCCccccccccccccCCcceeeeeCCceeeChHHHHH
Q psy12256 226 LRIANSTHPEGHSSADIHIAEEAVRHGASLITHLFNAMLPFHHRDPGIIGLLSSDNIDSSKVYYGIIADGVHTHPSALRI 305 (417)
Q Consensus 226 ~~~~~~~~~~~h~~~~~e~~~~a~~~g~~~~td~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~i~dg~~~~~~~l~~ 305 (417)
++.+.+++. .+..+.||.
T Consensus 248 ~~~~~~~~~----------------~~~~~~td~---------------------------------------------- 265 (365)
T TIGR03583 248 FHVAEKAKR----------------AGIFPDTIS---------------------------------------------- 265 (365)
T ss_pred HHHHHHHHh----------------CCCCCcccc----------------------------------------------
Confidence 544333221 111112210
Q ss_pred HHhcCCCCeEEeeCCeeeeeeecccccceeeCCCCCCCCCCCchhHHHHHhhhccCCCHHHHHHHHhHHHHHHcCCCCCc
Q psy12256 306 ANSTHPEGSITPFNGCVQFFMRSTRCSLWFDLGNCNNGGSITPFNGCVQFFMRSTRCSLVHALEVASLHPAKALGLEQHK 385 (417)
Q Consensus 306 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~l~~~t~~pA~~l~l~~~~ 385 (417)
+| +.-.+.++|+..++...+++++. .|++++++++++|.|||++||+++ .
T Consensus 266 ------------~d----------------~~~~~~~~gp~~~l~~~~~~~~~-~g~~~~ea~~~~t~npa~~~gl~~-~ 315 (365)
T TIGR03583 266 ------------TD----------------IYIRNRINGPVYSLATVMSKFLA-LGYSLEEVIEKVTKNAAEILKLTQ-K 315 (365)
T ss_pred ------------cc----------------cccCCCccCccccHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHhCCCC-C
Confidence 00 01124566777789999999886 599999999999999999999975 7
Q ss_pred cccccCCCccEEEEcCC-------------------CceeEEEECCEEe
Q psy12256 386 GTLDFGADADFVILDEG-------------------LHVYSTWIAGDLK 415 (417)
Q Consensus 386 G~l~~G~~ADlvv~d~~-------------------~~v~~v~~~G~~v 415 (417)
|+|++|+.|||+++|.+ ..++.|+++|++.
T Consensus 316 g~i~~g~~ad~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 364 (365)
T TIGR03583 316 GRLQEGYDADLTIFTVKAEPKKLTDSEGDSRIAEEQIKPLAVIIGGEYY 364 (365)
T ss_pred CCcCCCCcccEEEEecCCCCceeecCCCCEEEeccccceEEEEECCEEe
Confidence 99999999999999952 4568899999864
No 7
>TIGR02033 D-hydantoinase D-hydantoinase. This model represents the D-hydantoinase (dihydropyrimidinase) which primarily converts 5,6-dihydrouracil to 3-ureidopropanoate but also acts on dihydrothymine and hydantoin. The enzyme is a metalloenzyme.
Probab=99.94 E-value=5.6e-26 Score=231.46 Aligned_cols=77 Identities=27% Similarity=0.307 Sum_probs=68.5
Q ss_pred CCCCCCCCchhHHHHHhhhccCCCHHHHHHHHhHHHHHHcCCCCCccccccCCCccEEEEcCC-----------------
Q psy12256 340 CNNGGSITPFNGCVQFFMRSTRCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILDEG----------------- 402 (417)
Q Consensus 340 ~~~~g~~~~l~~~~~~~~~~~~~~~~~~l~~~t~~pA~~l~l~~~~G~l~~G~~ADlvv~d~~----------------- 402 (417)
.+++|....+...+++++++..+++.++++|+|.|||++||+++++|+|++|++|||+++|++
T Consensus 336 ~G~~g~e~~l~~l~~~~v~~~~~~~~~~~~~~t~~pa~~~gl~~~~G~l~~G~~AD~~i~d~~~~~~~~~~~~~~~~~~~ 415 (454)
T TIGR02033 336 NGGPGVEERMTLLFDEGVATGRITLEKFVELTSTNPAKIFNMYPRKGTIAVGSDADIVIWDPNRTTVISAETHHDNADYN 415 (454)
T ss_pred CCCchHHhHHHHHHHHHHHcCCCCHHHHHHHHhhHHHHHcCCCCCCCccccCCcCCEEEEcCCcCeeechHHhhccCCCC
Confidence 447888888888888888777899999999999999999999765899999999999999964
Q ss_pred --------CceeEEEECCEEec
Q psy12256 403 --------LHVYSTWIAGDLKL 416 (417)
Q Consensus 403 --------~~v~~v~~~G~~v~ 416 (417)
.+|..||++|+++|
T Consensus 416 p~~g~~~~g~v~~t~v~G~~v~ 437 (454)
T TIGR02033 416 PFEGFKVQGAVVSVLSRGRVVV 437 (454)
T ss_pred cccCeEEeeeEEEEEECCEEEE
Confidence 36899999999987
No 8
>KOG2584|consensus
Probab=99.93 E-value=3.2e-26 Score=217.00 Aligned_cols=343 Identities=20% Similarity=0.201 Sum_probs=214.5
Q ss_pred CeEEeCCCCEeeccchhhcccCCCCCCCCCCCCCcHHHHHHHHHHHHhCCceeeeeccCCCCHHHHHHHHHHHHcCCCCC
Q psy12256 3 DFRFDCGGKLIAPGFIDIQINGGFGVDFSHDIDSVDKNVSIVARGILAHGVTSFCPTLVTSEPQVYKKVLSRLRKTPGGK 82 (417)
Q Consensus 3 ~~vID~~G~~v~PG~ID~H~H~~~g~~~~~~~~~~~~~~~~~~~~~~~~GvTt~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (417)
-++||++|++|+||.||.|+|+. ++|... ...|++..+.++.+.+|+|++.|+.++..++++.+..+.|+++++ .
T Consensus 54 ~~~ida~g~~ViPGgID~Hthlq--~p~~G~--ts~DdF~~GTkAAlaGGtTmiID~vlp~~~~slv~afe~wr~~Ad-~ 128 (522)
T KOG2584|consen 54 VKVIDATGKMVIPGGIDPHTHLQ--MPFMGM--TSVDDFFQGTKAALAGGTTMIIDFVLPDKGTSLVEAFEKWREWAD-P 128 (522)
T ss_pred ceEEecCCcEEecCccCccceec--cccCCc--cchhhhhcccHHHhcCCceEEEEEecCCCCchHHHHHHHHHhhcC-C
Confidence 47999999999999999999985 344332 247889999999999999999999999998999999999999874 3
Q ss_pred CCceeEEeeeeCCCCCCC----------CCCCCCCcccCC-------Cc-HHHHHHHHHhCCCCCEEEEEecCCC-CChH
Q psy12256 83 HGATVLGAHVEGPFISPD----------KKGAHSLSKIVT-------FD-KGFDSVREVYGNLSNIAIITLAPEL-AGSM 143 (417)
Q Consensus 83 ~~~~~~G~~leGp~~~~~----------~~G~~~~~~~~~-------~~-~~~~~~~~~~g~~~~ik~~~~~pe~-~~~~ 143 (417)
+.++.+|+|+.--++++. .+|.....++.. -+ +.++.+... ...+ .+..++.|+ +.+.
T Consensus 129 k~cCDyglhv~It~W~~~v~eem~~l~~ekGvnsF~~fmayk~~~~v~d~~lye~l~~~-~~lg--ala~vHAEngd~ia 205 (522)
T KOG2584|consen 129 KVCCDYGLHVGITWWSPSVKEEMEILVKEKGVNSFKFFMAYKDLYMVRDSELYEALKVC-AELG--ALAMVHAENGDAIA 205 (522)
T ss_pred ceeeeeeeeEeeeecCcchHHHHHHHhhhcCcceEEeeeeeccccccCHHHHHHHHHHH-hhcc--hhheehhhcchhhh
Confidence 678999999854444332 245443332221 12 233333332 2211 445678888 4456
Q ss_pred HHHHHHHHCCCeeeecCCcCCHHHHH-HHHHC---------CCCeEeeCCC--Ccccc-cccCCceEEeecCCCCCCCce
Q psy12256 144 EVIDKLVEQGITVSLGHSSADINIAE-EAVRH---------GASLITHLFN--AMLPF-HHRDPGIIGLLSSDNIDSSKV 210 (417)
Q Consensus 144 ~~i~~~~~~gi~v~~GH~~~~~~~~~-~a~~~---------G~~~i~Hl~~--~~~~~-~~r~~g~~~~~~~~~l~~~~~ 210 (417)
+-.+.+.++||..+-||..+..++.. +|+.. +.--+.|+-. +|..+ ++|..|.+.... .+
T Consensus 206 e~q~~~l~~gitgPEgh~lSRPee~EaEA~~rai~ia~~~ncPlyvvhVmsksaa~~Ia~aRk~g~~v~ge-------pi 278 (522)
T KOG2584|consen 206 EGQQRLLELGITGPEGHELSRPEELEAEATNRAITIARQANCPLYVVHVMSKSAADAIALARKKGRVVFGE-------PI 278 (522)
T ss_pred hhhhHHHHcCCcCcccccccCchhhhHHHHHHHHHHHHhcCCCcceEEEeehhHHHHHHHHHhcCceeecc-------cc
Confidence 77888999999999999987766543 23211 1111222211 11122 134445444331 23
Q ss_pred EEEEecCCCcCCHHHHHHHHhhCCCCCCCCCHHHHHHHHHccceeeeccccccCCCCCCCCccccccccccccCCcceee
Q psy12256 211 YYGIIADGVHTHPSALRIANSTHPEGHSSADIHIAEEAVRHGASLITHLFNAMLPFHHRDPGIIGLLSSDNIDSSKVYYG 290 (417)
Q Consensus 211 ~~~~i~dg~h~~~~~~~~~~~~~~~~h~~~~~e~~~~a~~~g~~~~td~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~ 290 (417)
.+.+.-||.|+-.+ .+.|. ..++ +.|+.++.|+.-.. |-..|++.++..
T Consensus 279 ta~l~~dg~hy~~~---------~w~~A--------------a~~v------~sPPlr~d~~t~~~-L~~lLa~g~L~~- 327 (522)
T KOG2584|consen 279 TASLGTDGSHYWSK---------DWDHA--------------AAFV------TSPPLRPDPTTPDG-LMDLLAEGDLQL- 327 (522)
T ss_pred hhhhcccchhhccC---------Chhhc--------------ceee------eCCCCCCCCCCHHH-HHHHHhcCccce-
Confidence 33444555555111 11110 0223 44555665533211 111223333221
Q ss_pred eeCCceee-ChHHHHHHHhcCCCCeEEeeCCeeeeeeecccccceeeCCCCCCCCCCCchhHHHHHhhhccCCCHHHHHH
Q psy12256 291 IIADGVHT-HPSALRIANSTHPEGSITPFNGCVQFFMRSTRCSLWFDLGNCNNGGSITPFNGCVQFFMRSTRCSLVHALE 369 (417)
Q Consensus 291 ~i~dg~~~-~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~l~ 369 (417)
...-|+ +...++.+ +.+.+..+ .+++.|-...|...+...+..+.|++.+.+.
T Consensus 328 --tgSdhctf~~~qKal---gKddFt~i---------------------p~GvnGvedrMsviwekgv~~G~md~~~fVa 381 (522)
T KOG2584|consen 328 --TGSDHCTFTTEQKAL---GKDDFTKI---------------------PNGVNGVEDRMSVIWEKGVHSGKMDENRFVA 381 (522)
T ss_pred --eecCCCCCCHHHHhh---ccCccccC---------------------CCccccccccceeeeehhcccCccCcccEEE
Confidence 111132 12222211 11222222 3444566667777888888888899999999
Q ss_pred HHhHHHHHHcCCCCCccccccCCCccEEEEcCC-------------------------CceeEEEECCEEecC
Q psy12256 370 VASLHPAKALGLEQHKGTLDFGADADFVILDEG-------------------------LHVYSTWIAGDLKLT 417 (417)
Q Consensus 370 ~~t~~pA~~l~l~~~~G~l~~G~~ADlvv~d~~-------------------------~~v~~v~~~G~~v~~ 417 (417)
.+|.|.|++||+.+++|+|++|++||+||||++ +.+.-|+.+||+||.
T Consensus 382 vtstnaAkifnlYprKGrIavGsDADiVIwdp~at~tIS~~th~~~~d~NifEGm~~~G~plvtIsrGriv~e 454 (522)
T KOG2584|consen 382 VTSTNAAKIFNLYPRKGRIAVGSDADIVIWDPNATKTISAKTHHSANDFNIFEGMTVHGVPLVTISRGRVVYE 454 (522)
T ss_pred EecccchhheeccCcCceecccCCCcEEEECCCcceEeccccccccccceeecCcEecceeEEEEeCCeEEEe
Confidence 999999999999999999999999999999986 568889999999984
No 9
>PRK10027 cryptic adenine deaminase; Provisional
Probab=99.91 E-value=1.3e-22 Score=208.84 Aligned_cols=131 Identities=19% Similarity=0.247 Sum_probs=102.7
Q ss_pred CCCCCCCHHHHHHHHHccceeeeccccccCCCCCCCCccccccccccccCCcceeeeeCCceeeChHHHHHHHhcCCCCe
Q psy12256 235 EGHSSADIHIAEEAVRHGASLITHLFNAMLPFHHRDPGIIGLLSSDNIDSSKVYYGIIADGVHTHPSALRIANSTHPEGS 314 (417)
Q Consensus 235 ~~h~~~~~e~~~~a~~~g~~~~td~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~i~dg~~~~~~~l~~~~~~~~~~~ 314 (417)
..|+..+.||+.+.++.|+... + |+ |++ .+..+..++...+...+++
T Consensus 233 sDHE~~t~eea~eklr~Gm~v~------i-----Re----gS~------------------~~nl~~l~~~~~~~~~~~~ 279 (588)
T PRK10027 233 NCHESYQLEEGRRKLQLGMSLM------I-----RE----GSA------------------ARNLNALAPLINEFNSPQC 279 (588)
T ss_pred CCcccCCHHHHHHHHHCCCEEE------E-----eC----Ccc------------------ccCHHHHHHHhhccCCCeE
Confidence 4588899999999999998865 2 22 221 1233455555555556789
Q ss_pred EEeeCCeeeeeeecccccceeeCCCCCCCCCCCchhHHHHHhhhccCCCHHHHHHHHhHHHHHHcCCCCCccccccCCCc
Q psy12256 315 ITPFNGCVQFFMRSTRCSLWFDLGNCNNGGSITPFNGCVQFFMRSTRCSLVHALEVASLHPAKALGLEQHKGTLDFGADA 394 (417)
Q Consensus 315 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~l~~~t~~pA~~l~l~~~~G~l~~G~~A 394 (417)
++|+|+..+. .+...| .+...++.++++.|+++++|++|+|.|||+++|+++ +|+|+||+.|
T Consensus 280 ~l~TDd~~~~----------~l~~~G-------hi~~~vr~av~~~Gi~~~~Ai~mAT~nPA~~lgl~d-~G~IapG~~A 341 (588)
T PRK10027 280 MLCTDDRNPW----------EIAHEG-------HIDALIRRLIEQHNVPLHVAYRVASWSTARHFGLNH-LGLLAPGKQA 341 (588)
T ss_pred EEEcCCCChH----------HHHhcc-------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCC-CcccCCCCcC
Confidence 9999988631 122223 478899999987899999999999999999999976 7999999999
Q ss_pred cEEEEcC--CCceeEEEECCEEec
Q psy12256 395 DFVILDE--GLHVYSTWIAGDLKL 416 (417)
Q Consensus 395 Dlvv~d~--~~~v~~v~~~G~~v~ 416 (417)
||+++|. +.++..||++|++++
T Consensus 342 Dlvvld~l~~~~v~~v~~~G~~v~ 365 (588)
T PRK10027 342 DIVLLSDARKVTVQQVLVKGEPID 365 (588)
T ss_pred CEEEEccCCCceEEEEEECCEEee
Confidence 9999995 488999999999886
No 10
>TIGR01975 isoAsp_dipep isoaspartyl dipeptidase IadA. The L-isoaspartyl derivative of Asp arises non-enzymatically over time as a form of protein damage. In this isomerization, the connectivity of the polypeptide changes to pass through the beta-carboxyl of the side chain. Much but not all of this damage can be repaired by protein-L-isoaspartate (D-aspartate) O-methyltransferase. This model describes the isoaspartyl dipeptidase IadA, apparently one of two such enzymes in E. coli, an enzyme that degrades isoaspartyl dipeptides and may unblock degradation of proteins that cannot be repaired. This model also describes closely related proteins from other species (e.g. Clostridium perfringens, Thermoanaerobacter tengcongensis) that we assume to be equivalent in function. This family shows homology to dihydroorotases.
Probab=99.91 E-value=1.6e-22 Score=200.07 Aligned_cols=306 Identities=20% Similarity=0.202 Sum_probs=175.3
Q ss_pred EEeCCCCEeeccchhhcccCCCCCCCCCCCCCcHHHHHHHHHHHHhCCceeeeeccCCCCH----HHHHHHHHHHHcCCC
Q psy12256 5 RFDCGGKLIAPGFIDIQINGGFGVDFSHDIDSVDKNVSIVARGILAHGVTSFCPTLVTSEP----QVYKKVLSRLRKTPG 80 (417)
Q Consensus 5 vID~~G~~v~PG~ID~H~H~~~g~~~~~~~~~~~~~~~~~~~~~~~~GvTt~~~~~~~~~~----~~~~~~~~~~~~~~~ 80 (417)
++|++|++|+|||||.|+|..++......... +.+..+.+++++||||++++..++.. +.+....+++.+.
T Consensus 46 i~d~~G~~v~PGlID~HvH~~~gg~~~~~~~~---~~e~~~~e~l~~GvTTv~d~~g~~~~~~~~~~~~a~~~al~~~-- 120 (389)
T TIGR01975 46 VVGLEGMIAVPGFIDQHVHIIGGGGEGGPTTR---TPELTLSDITKGGVTTVVGLLGTDGITRHMESLLAKARALEEE-- 120 (389)
T ss_pred EECCCCCEEccCEeehhhccccccccCCCccC---CHHHHHHHHHhCCcEEEecCcccCccccChhhHHHHHHHHHHh--
Confidence 45669999999999999997654221111001 12345788999999999998765333 3233333333221
Q ss_pred CCCCceeEEeeeeCCCCCCC--CCCCCCCcccCCCcHHHHHHHHHhCCCCCEEEEEe------cCCCCChHHHHHHHHHC
Q psy12256 81 GKHGATVLGAHVEGPFISPD--KKGAHSLSKIVTFDKGFDSVREVYGNLSNIAIITL------APELAGSMEVIDKLVEQ 152 (417)
Q Consensus 81 ~~~~~~~~G~~leGp~~~~~--~~G~~~~~~~~~~~~~~~~~~~~~g~~~~ik~~~~------~pe~~~~~~~i~~~~~~ 152 (417)
.+.+..+.|-|--+. --|. ...++. ..++ ..| +|-+.+ .|.......+.+.++..
T Consensus 121 -----Gir~~~~~g~~~~p~~t~t~~----~~~d~~-~~d~---iiG----~~~ia~sd~r~~~~~~~~l~~~~~~~~~~ 183 (389)
T TIGR01975 121 -----GISCYMLTGAYHVPSRTITGS----VESDLL-LIDK---VIG----VGEIAISDHRSAQPTVEHLTNMAAEARVG 183 (389)
T ss_pred -----CCEEEEEcccccCCCcccccc----hhhhee-eehh---hcc----cceEEEccCcCCCCCHHHHHHHHHHHHHH
Confidence 122222233221110 0111 011100 0111 112 221222 23333334445555555
Q ss_pred C--------CeeeecCCcCCHHHHHHHHHCCCCeEeeCCCCcccccccCCceEEeecCCCCCCCceEEEEecCCCcCCHH
Q psy12256 153 G--------ITVSLGHSSADINIAEEAVRHGASLITHLFNAMLPFHHRDPGIIGLLSSDNIDSSKVYYGIIADGVHTHPS 224 (417)
Q Consensus 153 g--------i~v~~GH~~~~~~~~~~a~~~G~~~i~Hl~~~~~~~~~r~~g~~~~~~~~~l~~~~~~~~~i~dg~h~~~~ 224 (417)
| +.+++|..+..++++.+.++.| +..+|.|+.- ...+
T Consensus 184 g~~~~~~g~~~vH~g~~~~~l~~l~~~~~~~-di~~~~f~pt-------------h~~r--------------------- 228 (389)
T TIGR01975 184 GLLGGKPGIVNFHVGDSKRALQPIYELVENT-DVPITQFLPT-------------HINR--------------------- 228 (389)
T ss_pred HHhcCCCcEEEEEeCCchhhHHHHHHHHHhc-CCChhheecC-------------ccCC---------------------
Confidence 5 4456666666777888888777 7777766321 1000
Q ss_pred HHHHHHhhCCCCCCCCCHHHHHHHHHccceeeeccccccCCCCCCCCccccccccccccCCcceeeeeCCceeeChHHHH
Q psy12256 225 ALRIANSTHPEGHSSADIHIAEEAVRHGASLITHLFNAMLPFHHRDPGIIGLLSSDNIDSSKVYYGIIADGVHTHPSALR 304 (417)
Q Consensus 225 ~~~~~~~~~~~~h~~~~~e~~~~a~~~g~~~~td~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~i~dg~~~~~~~l~ 304 (417)
+..-+++..++.+.|..+ |......+ . ++.++.+.+...++
T Consensus 229 -------------~~~l~~~~i~~~~~gg~i--Dv~~~~~~---------~---------------~l~~~~~~~~~~~~ 269 (389)
T TIGR01975 229 -------------NVPLFEAGLEFAKKGGTI--DLTSSIDP---------Q---------------FRKEGEVAPAEGIK 269 (389)
T ss_pred -------------CHHHHHHHHHHHHhCCcE--EEeCCCCc---------c---------------chhccccChHHHHH
Confidence 001134444454444332 11111100 0 00223344555677
Q ss_pred HHHhcC--CCCeEEeeCCeeeeeeecccccceeeCCCC----CCCCCCCchhHHHHHhhhccCCCHHHHHHHHhHHHHHH
Q psy12256 305 IANSTH--PEGSITPFNGCVQFFMRSTRCSLWFDLGNC----NNGGSITPFNGCVQFFMRSTRCSLVHALEVASLHPAKA 378 (417)
Q Consensus 305 ~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~----~~~g~~~~l~~~~~~~~~~~~~~~~~~l~~~t~~pA~~ 378 (417)
.+.+.+ ++++.+.||.....+ .....| .-.|+..++...++.+++..+++++++++++|.|||++
T Consensus 270 ~~~~~Gv~~~~i~isSD~~gs~p---------~~~~~g~~~~~g~g~~~sl~~~~~~lv~~g~ls~~eal~~~T~npA~~ 340 (389)
T TIGR01975 270 KALEAGVPLEKVTFSSDGNGSQP---------FFDENGELTGLGVGSFETLFEEVREAVKDGDVPLEKALRVITSNVAGV 340 (389)
T ss_pred HHHHcCCCcceEEEEeCCCCCCC---------ccccccccccCCcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 777766 567889998754211 111122 22344556788899998877799999999999999999
Q ss_pred cCCCCCccccccCCCccEEEEcCCCceeEEEECCEEec
Q psy12256 379 LGLEQHKGTLDFGADADFVILDEGLHVYSTWIAGDLKL 416 (417)
Q Consensus 379 l~l~~~~G~l~~G~~ADlvv~d~~~~v~~v~~~G~~v~ 416 (417)
||++ .+|+|++|++|||+++|.+.++..||.+|++++
T Consensus 341 Lgl~-~~G~I~~G~~ADlvild~~~~i~~v~~~G~~v~ 377 (389)
T TIGR01975 341 LNLT-GKGEISPGNDADLVVLDPDLRIHSVIARGKLMV 377 (389)
T ss_pred hCCC-CCCeECCCCcCCEEEEcCCCCEEEEEECCEEEE
Confidence 9997 489999999999999999999999999999875
No 11
>PRK13404 dihydropyrimidinase; Provisional
Probab=99.90 E-value=1.2e-22 Score=207.29 Aligned_cols=336 Identities=15% Similarity=0.123 Sum_probs=184.2
Q ss_pred CeEEeCCCCEeeccchhhcccCCCCCCCCCCCCCcHHHHHHHHHHHHhCCceeeeeccCCCCHHHHHHHHHHHHcCCCCC
Q psy12256 3 DFRFDCGGKLIAPGFIDIQINGGFGVDFSHDIDSVDKNVSIVARGILAHGVTSFCPTLVTSEPQVYKKVLSRLRKTPGGK 82 (417)
Q Consensus 3 ~~vID~~G~~v~PG~ID~H~H~~~g~~~~~~~~~~~~~~~~~~~~~~~~GvTt~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (417)
.++||++|++|+|||||+|+|++....... ...+++.+.+++++.+||||++++..+.+...+.+.++..+.....
T Consensus 42 ~~~iD~~G~~v~PG~ID~H~H~~~~~~~~~---~~~e~~~~~s~aa~~gGvTtv~~~~~~~~~~~~~~~l~~~~~~~~~- 117 (477)
T PRK13404 42 AREIDATGRLVLPGGVDSHCHIDQPSGDGI---MMADDFYTGTVSAAFGGTTTVIPFAAQHRGQSLREAVEDYHRRAAG- 117 (477)
T ss_pred CeEEECCCCEEecCEEEeEEcCCccccCCc---cccchHHHHHHHHHcCCccEEEEccCCCCCCCHHHHHHHHHHHhcc-
Confidence 578999999999999999999864210001 1246789999999999999999988776666666666665444311
Q ss_pred CCceeEEeeeeCCCCCCCCCCCCCCcccCCCcHHHHHHHHHhCCCCCEEEEEec--CCC--CChHHHHHHHHHCCCeeee
Q psy12256 83 HGATVLGAHVEGPFISPDKKGAHSLSKIVTFDKGFDSVREVYGNLSNIAIITLA--PEL--AGSMEVIDKLVEQGITVSL 158 (417)
Q Consensus 83 ~~~~~~G~~leGp~~~~~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~ik~~~~~--pe~--~~~~~~i~~~~~~gi~v~~ 158 (417)
.+...+++|..-+ . + .++.. .+++..+.+ .| ...+|++.-. +.. ....+++++++++|..+.+
T Consensus 118 ~~~vd~~~~~~~~---~---~--~~~~~---~~~v~~l~~-~G-~~~iKi~~~~~~~~~~~~~l~~~~~~a~~~g~~V~~ 184 (477)
T PRK13404 118 KAVIDYAFHLIVA---D---P--TEEVL---TEELPALIA-QG-YTSFKVFMTYDDLKLDDRQILDVLAVARRHGAMVMV 184 (477)
T ss_pred CcEEEEEEEEEec---C---C--ChhhH---HHHHHHHHH-cC-CCEEEEEecCCCCCCCHHHHHHHHHHHHhcCCEEEE
Confidence 2222344443110 0 0 00000 023455543 23 4568876421 111 2356888999999999987
Q ss_pred cCCcCCHHHH----HHHHHCCCCeEeeCCCCcccccccCCceEEeecCCCCCCCceEEEEecCCCcCCHHHHHHHHhhC-
Q psy12256 159 GHSSADINIA----EEAVRHGASLITHLFNAMLPFHHRDPGIIGLLSSDNIDSSKVYYGIIADGVHTHPSALRIANSTH- 233 (417)
Q Consensus 159 GH~~~~~~~~----~~a~~~G~~~i~Hl~~~~~~~~~r~~g~~~~~~~~~l~~~~~~~~~i~dg~h~~~~~~~~~~~~~- 233 (417)
|.. +.+-+ ..+.+.|...........+.. .... .+ ...+.++.+..
T Consensus 185 -Hae-~~~~i~~~~~~~~~~G~~~~~~~~~~rp~~-------~E~~--------~v------------~~~~~la~~~g~ 235 (477)
T PRK13404 185 -HAE-NHDMIAWLTKRLLAAGLTAPKYHAISRPML-------AERE--------AT------------HRAIALAELVDV 235 (477)
T ss_pred -EeC-CHHHHHHHHHHHHHCCCcchhhccccCCHH-------HHHH--------HH------------HHHHHHHHHhCC
Confidence 885 33332 245566654332211111110 0000 00 11222232221
Q ss_pred --CCCCCCC--CHHHHHHHHHccceeeecc-----c----------------cccCCCCCCCCccccccccccccCCcce
Q psy12256 234 --PEGHSSA--DIHIAEEAVRHGASLITHL-----F----------------NAMLPFHHRDPGIIGLLSSDNIDSSKVY 288 (417)
Q Consensus 234 --~~~h~~~--~~e~~~~a~~~g~~~~td~-----~----------------~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 288 (417)
.+.|.+. +.+.+.++.+.|..+..+. + ...||+..
T Consensus 236 ~~hi~Hvs~~~~~~~i~~~k~~g~~vt~e~~ph~L~l~~~~~~~~~~~g~~~k~~Pplr~-------------------- 295 (477)
T PRK13404 236 PILIVHVSGREAAEQIRRARGRGLKIFAETCPQYLFLTAEDLDRPGMEGAKYICSPPPRD-------------------- 295 (477)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEEChhhhccCHHHhcCccccCCceEECCCCCC--------------------
Confidence 1223221 1233444444554322110 0 00111111
Q ss_pred eeeeCCceeeChHHHHHHHhcC-CCCe-EEeeCCeeeeeeecc------cccceeeCCCCCCCCCCCchhHHHHHhhhcc
Q psy12256 289 YGIIADGVHTHPSALRIANSTH-PEGS-ITPFNGCVQFFMRST------RCSLWFDLGNCNNGGSITPFNGCVQFFMRST 360 (417)
Q Consensus 289 ~~~i~dg~~~~~~~l~~~~~~~-~~~~-~~~~d~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~ 360 (417)
+...+.+++.- ...+ ++.+|... +..... +...++.....++.|....+...++.+++..
T Consensus 296 -----------~~d~~aL~~~l~~G~id~i~sDHap-~~~~eK~~~~~~~~~~~~~~~~~G~~gie~~l~~ll~~~v~~~ 363 (477)
T PRK13404 296 -----------KANQEAIWNGLADGTFEVFSSDHAP-FRFDDTDGKLAAGANPSFKAIANGIPGIETRLPLLFSEGVVKG 363 (477)
T ss_pred -----------hHHHHHHHHHHhCCCceEEecCCCC-CCcccchhhhhccCCCCHhhCCCCcccHHHHHHHHHHHHHHcC
Confidence 11111111111 1112 34455442 211100 0000012234556677777777787777777
Q ss_pred CCCHHHHHHHHhHHHHHHcCCCCCccccccCCCccEEEEcCC-------------------------CceeEEEECCEEe
Q psy12256 361 RCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILDEG-------------------------LHVYSTWIAGDLK 415 (417)
Q Consensus 361 ~~~~~~~l~~~t~~pA~~l~l~~~~G~l~~G~~ADlvv~d~~-------------------------~~v~~v~~~G~~v 415 (417)
+++++++++++|.|||++||+.+++|+|++|++|||+++|.+ .+|..||++|+++
T Consensus 364 ~ls~~~~~~~~t~~pA~~lgl~~~~G~i~~G~~ADlvivd~~~~~~v~~~~~~~~~~~sp~~g~~~~g~v~~tiv~G~vv 443 (477)
T PRK13404 364 RISLNRFVALTSTNPAKLYGLYPRKGAIAIGADADIAIWDPDREVTITNADLHHAADYTPYEGMRVTGWPVTVLSRGRVV 443 (477)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCCCCceecCCCcCCEEEEcCCccEEEchHHhcccCCCCcccceEEeeeEEEEEECCEEE
Confidence 899999999999999999999655899999999999999964 3578999999998
Q ss_pred c
Q psy12256 416 L 416 (417)
Q Consensus 416 ~ 416 (417)
|
T Consensus 444 ~ 444 (477)
T PRK13404 444 V 444 (477)
T ss_pred E
Confidence 7
No 12
>COG0044 PyrC Dihydroorotase and related cyclic amidohydrolases [Nucleotide transport and metabolism]
Probab=99.90 E-value=3.1e-22 Score=199.38 Aligned_cols=79 Identities=29% Similarity=0.403 Sum_probs=70.7
Q ss_pred CCCCCCCCCCCchhHHHHHhhhccCCCHHHHHHHHhHHHHHHcCCCCCccccccCCCccEEEEcCC--------------
Q psy12256 337 LGNCNNGGSITPFNGCVQFFMRSTRCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILDEG-------------- 402 (417)
Q Consensus 337 ~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~l~~~t~~pA~~l~l~~~~G~l~~G~~ADlvv~d~~-------------- 402 (417)
....++.|..+.+...+. +++.+.+|+.+++++.|.|||++|||+. +|.|++|++|||+|+|.+
T Consensus 318 ~ap~G~~glE~~lpl~l~-lv~~g~lsl~~~v~~~S~nPA~ifgl~~-~g~i~~G~~ADl~lvD~~~~~~i~~~~~~sk~ 395 (430)
T COG0044 318 EAPSGIPGLETALPLLLT-LVKKGRLSLERLVELLSTNPARIFGLPP-KGAIEEGADADLVLVDPDEEWTIRAEELYSKA 395 (430)
T ss_pred hCCCCCccHHHHHHHHHH-HHHcCCcCHHHHHHHHhhCHHHHhCCCC-CCcccCCCccCEEEEcCCCCeEEchhhhcccc
Confidence 456778888888888888 8888889999999999999999999987 788999999999999965
Q ss_pred -----------CceeEEEECCEEecC
Q psy12256 403 -----------LHVYSTWIAGDLKLT 417 (417)
Q Consensus 403 -----------~~v~~v~~~G~~v~~ 417 (417)
.+|..|+++|+++|.
T Consensus 396 ~~sPf~G~~~~g~v~~Ti~rG~~v~~ 421 (430)
T COG0044 396 KNSPFEGFELKGRVVATILRGKVVYE 421 (430)
T ss_pred CCCCcCCCEEeeeEEEEEECCEEEEE
Confidence 579999999999873
No 13
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=99.90 E-value=6.5e-22 Score=194.23 Aligned_cols=168 Identities=18% Similarity=0.215 Sum_probs=98.3
Q ss_pred CeEEeCCCCEeeccchhhcccCCCCCCCCCC-----CCCcHHHHHHHHHHHHhCCceeeeeccCCCCHHHHHHHHHHHHc
Q psy12256 3 DFRFDCGGKLIAPGFIDIQINGGFGVDFSHD-----IDSVDKNVSIVARGILAHGVTSFCPTLVTSEPQVYKKVLSRLRK 77 (417)
Q Consensus 3 ~~vID~~G~~v~PG~ID~H~H~~~g~~~~~~-----~~~~~~~~~~~~~~~~~~GvTt~~~~~~~~~~~~~~~~~~~~~~ 77 (417)
+++||++|+||||||||+|+|.......... ...........++.++++||||++++....+.. ..+.+.+
T Consensus 1 ~~vID~~g~~v~PGliD~H~Hl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~g~~~~~~----~~~~~~~ 76 (342)
T cd01299 1 AQVIDLGGKTLMPGLIDAHTHLGSDPGDLPLDLALPVEYRTIRATRQARAALRAGFTTVRDAGGADYGL----LRDAIDA 76 (342)
T ss_pred CcEEeCCCCEECCCeeeeeeeccccCCCccccccCCHHHHHHHHHHHHHHHHhCCCcEEEeCCCcchHH----HHHHHHc
Confidence 4789999999999999999997542110000 000111234678889999999999976543322 2223333
Q ss_pred CCCCCCCceeEEeeeeCCCCCCCC-CCCC-----------CCcccCCCcH---HHHHHHHHhCCCCCEEEEEecC-----
Q psy12256 78 TPGGKHGATVLGAHVEGPFISPDK-KGAH-----------SLSKIVTFDK---GFDSVREVYGNLSNIAIITLAP----- 137 (417)
Q Consensus 78 ~~~~~~~~~~~G~~leGp~~~~~~-~G~~-----------~~~~~~~~~~---~~~~~~~~~g~~~~ik~~~~~p----- 137 (417)
.. ..+++++ ..||.+.... .+.. .......+++ .++++.+. +.+.||++..-.
T Consensus 77 g~--~~gPr~~---~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--G~~~iK~~~~g~~~~~~ 149 (342)
T cd01299 77 GL--IPGPRVF---ASGRALSQTGGHGDPRGLSGLFPAGGLAAVVDGVEEVRAAVREQLRR--GADQIKIMATGGVLSPG 149 (342)
T ss_pred CC--ccCCcee---ecchhhcccCCCCccccccccccccCCcceecCHHHHHHHHHHHHHh--CCCEEEEeccCCcCCCC
Confidence 21 2344443 2455443211 1100 0011222332 34444443 457889875311
Q ss_pred ------CC--CChHHHHHHHHHCCCeeeecCCcCCHHHHHHHHHCCCCeEeeCC
Q psy12256 138 ------EL--AGSMEVIDKLVEQGITVSLGHSSADINIAEEAVRHGASLITHLF 183 (417)
Q Consensus 138 ------e~--~~~~~~i~~~~~~gi~v~~GH~~~~~~~~~~a~~~G~~~i~Hl~ 183 (417)
.+ +...++++.++++|+++.+ |.. ....+..++++|.+.++|..
T Consensus 150 ~~~~~~~~~~e~l~~~~~~A~~~g~~v~~-H~~-~~~~i~~~l~~G~~~i~H~~ 201 (342)
T cd01299 150 DPPPDTQFSEEELRAIVDEAHKAGLYVAA-HAY-GAEAIRRAIRAGVDTIEHGF 201 (342)
T ss_pred CCCcccCcCHHHHHHHHHHHHHcCCEEEE-EeC-CHHHHHHHHHcCCCEEeecC
Confidence 11 1245789999999999986 884 45677788899999999965
No 14
>COG1001 AdeC Adenine deaminase [Nucleotide transport and metabolism]
Probab=99.90 E-value=5.5e-22 Score=197.51 Aligned_cols=280 Identities=22% Similarity=0.285 Sum_probs=175.8
Q ss_pred CCeEEeCCCCEeeccchhhcccCCCCCCCCCCCCCcHHHHHHHHHHHHhCCceeeeeccCCCCHHHHHHHH--HHHHcCC
Q psy12256 2 ADFRFDCGGKLIAPGFIDIQINGGFGVDFSHDIDSVDKNVSIVARGILAHGVTSFCPTLVTSEPQVYKKVL--SRLRKTP 79 (417)
Q Consensus 2 ~~~vID~~G~~v~PG~ID~H~H~~~g~~~~~~~~~~~~~~~~~~~~~~~~GvTt~~~~~~~~~~~~~~~~~--~~~~~~~ 79 (417)
+.++||+.|+||.|||||.|+|.-.. .-+...+++..+.+||||+. .+|++ +..+. +.++-..
T Consensus 64 ~~~~iDa~g~yivPGfID~H~HIESS----------m~tP~~FA~~Vlp~GtTtvV----~DPHE-IaNV~G~~Gi~~ml 128 (584)
T COG1001 64 ATEVIDAAGRYIVPGFIDAHLHIESS----------MLTPSEFARAVLPHGTTTVV----SDPHE-IANVLGEDGIRFML 128 (584)
T ss_pred cceeecCCCCEeccceeecceecccc----------ccCHHHHHHHhhccCceEEe----eCcHH-HHhhccHHHHHHHH
Confidence 46899999999999999999997321 11256778999999999995 45554 22211 1111111
Q ss_pred CCCCCceeEEeeeeCCCCCCCC----CCCCCCcccCCCcHHHHHHHHHhCCCCCEEE--EEecCCC----CChHHHHHHH
Q psy12256 80 GGKHGATVLGAHVEGPFISPDK----KGAHSLSKIVTFDKGFDSVREVYGNLSNIAI--ITLAPEL----AGSMEVIDKL 149 (417)
Q Consensus 80 ~~~~~~~~~G~~leGp~~~~~~----~G~~~~~~~~~~~~~~~~~~~~~g~~~~ik~--~~~~pe~----~~~~~~i~~~ 149 (417)
+.... ..+-+++.-|+.=|.- .|+ .+. -+.+++|.+- ...+-+ +.--|.+ +.....++.+
T Consensus 129 ~~a~~-~pl~~~~~~pScVPat~~Et~Ga----~l~--a~~i~e~~~~---p~Vigl~E~Mn~pgVi~~D~~~l~kl~a~ 198 (584)
T COG1001 129 DEAKE-TPLKVYVMLPSCVPATPFETSGA----ELT--AEDIKELLEH---PEVIGLGEMMNFPGVIEGDPDMLAKLEAA 198 (584)
T ss_pred HHHhh-CCeEEEEecccCccCCccccCCc----eec--HHHHHHHhhC---CCccchhhhcCCchhccCCHHHHHHHHHH
Confidence 10011 1222444444332211 111 010 0334444441 111110 0111211 2345667777
Q ss_pred HHCCCeeeecCCcC-CHHHHHHHHHCCCCeEeeCCCCcccccccCCceEEeecCCCCCCCceEEEEecCCCcCCHHHHHH
Q psy12256 150 VEQGITVSLGHSSA-DINIAEEAVRHGASLITHLFNAMLPFHHRDPGIIGLLSSDNIDSSKVYYGIIADGVHTHPSALRI 228 (417)
Q Consensus 150 ~~~gi~v~~GH~~~-~~~~~~~a~~~G~~~i~Hl~~~~~~~~~r~~g~~~~~~~~~l~~~~~~~~~i~dg~h~~~~~~~~ 228 (417)
++.|.++- ||.+. +-.+....+.+|+
T Consensus 199 ~~~~k~Vd-GHapgl~g~~Ln~Y~aaGi---------------------------------------------------- 225 (584)
T COG1001 199 RKAGKPVD-GHAPGLSGKELNAYIAAGI---------------------------------------------------- 225 (584)
T ss_pred HHcCCeec-ccCCCCChHHHHHHHhcCC----------------------------------------------------
Confidence 77777774 78752 1112222222221
Q ss_pred HHhhCCCCCCCCCHHHHHHHHHccceeeeccccccCCCCCCCCccccccccccccCCcceeeeeCCceeeChHHHHHHHh
Q psy12256 229 ANSTHPEGHSSADIHIAEEAVRHGASLITHLFNAMLPFHHRDPGIIGLLSSDNIDSSKVYYGIIADGVHTHPSALRIANS 308 (417)
Q Consensus 229 ~~~~~~~~h~~~~~e~~~~a~~~g~~~~td~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~i~dg~~~~~~~l~~~~~ 308 (417)
+..|...+.||+.+.++.|+...- |+ |+. .+.....++...+
T Consensus 226 -----~tDHE~~t~EEa~~klr~Gm~i~i-----------Re----GS~------------------a~dl~~l~~~i~e 267 (584)
T COG1001 226 -----STDHESTTAEEALEKLRLGMKIMI-----------RE----GSA------------------AKDLAALLPAITE 267 (584)
T ss_pred -----CcCcccCCHHHHHHHHhCCcEEEE-----------Ec----Cch------------------hhhHHHHHHHHhh
Confidence 345888999999999999988652 22 221 2344566666666
Q ss_pred cCCCCeEEeeCCeeeeeeecccccceeeCCCCCCCCCCCchhHHHHHhhhccCCCHHHHHHHHhHHHHHHcCCCCCcccc
Q psy12256 309 THPEGSITPFNGCVQFFMRSTRCSLWFDLGNCNNGGSITPFNGCVQFFMRSTRCSLVHALEVASLHPAKALGLEQHKGTL 388 (417)
Q Consensus 309 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~l~~~t~~pA~~l~l~~~~G~l 388 (417)
.+.+++++|+|+..+. .+...| .|...++.+++. |++|.+|++|+|.|||+++|+++ .|.|
T Consensus 268 ~~~~~~~lcTDD~~p~----------dl~~eG-------hld~~vR~Ai~~-Gv~p~~a~qmAtiN~A~~~gl~~-~G~i 328 (584)
T COG1001 268 LGSRRVMLCTDDRHPD----------DLLEEG-------HLDRLVRRAIEE-GVDPLDAYQMATINPAEHYGLDD-LGLI 328 (584)
T ss_pred cCCceEEEECCCCChh----------HhhhcC-------CHHHHHHHHHHc-CCCHHHHHHHHhcCHHHHcCCcc-cccc
Confidence 6668899999998731 122233 488899999974 99999999999999999999987 9999
Q ss_pred ccCCCccEEEEc--CCCceeEEEECCEEec
Q psy12256 389 DFGADADFVILD--EGLHVYSTWIAGDLKL 416 (417)
Q Consensus 389 ~~G~~ADlvv~d--~~~~v~~v~~~G~~v~ 416 (417)
+||+.|||++++ .+.++..|+++|+++.
T Consensus 329 APG~~ADlvi~~DL~~~~v~~V~~~G~~v~ 358 (584)
T COG1001 329 APGRRADLVILEDLRNFKVTSVLIKGRVVA 358 (584)
T ss_pred cCCccccEEEEcccccCceeEEEECCEEEe
Confidence 999999999998 4789999999999985
No 15
>TIGR01178 ade adenine deaminase. The family described by this model includes an experimentally characterized adenine deaminase of Bacillus subtilis. It also include a member from Methanobacterium thermoautotrophicum, in which adenine deaminase activity has been detected.
Probab=99.89 E-value=2.1e-21 Score=199.78 Aligned_cols=282 Identities=22% Similarity=0.254 Sum_probs=173.0
Q ss_pred CeEEeCCCCEeeccchhhcccCCCCCCCCCCCCCcHHHHHHHHHHHHhCCceeeeeccCCC----CHHHHHHHHHHHHcC
Q psy12256 3 DFRFDCGGKLIAPGFIDIQINGGFGVDFSHDIDSVDKNVSIVARGILAHGVTSFCPTLVTS----EPQVYKKVLSRLRKT 78 (417)
Q Consensus 3 ~~vID~~G~~v~PG~ID~H~H~~~g~~~~~~~~~~~~~~~~~~~~~~~~GvTt~~~~~~~~----~~~~~~~~~~~~~~~ 78 (417)
+++||++|+||+|||||+|+|..... . . . ..+++..+.+||||+++..... ..+.+...++..++.
T Consensus 38 ~~viDa~G~~v~PG~ID~H~Hi~~~~--~--~---~---~~~~~~al~~GvTtvv~~P~~~~~v~g~~~~~~~~~~a~~~ 107 (552)
T TIGR01178 38 VKVIDALGEYAVPGFIDAHIHIESSM--L--T---P---SEFAKLVLPHGVTTVVSDPHEIANVNGEDGINFMLNNAKKT 107 (552)
T ss_pred CeEEECCCCEEEeCeEecccccCCCC--C--C---h---hHHHHHHHCCCEEEEEcCCCCCCCCCCHHHHHHHHHHhhcC
Confidence 57899999999999999999975321 1 1 2 2345678999999999764432 233333333322211
Q ss_pred CCCCCCceeEEeeeeCCCCCCCCCCCCCCcccCCCc-HHHHHHHHHhCCCCCEEEEEecCCC----CChHHHHHHHHHCC
Q psy12256 79 PGGKHGATVLGAHVEGPFISPDKKGAHSLSKIVTFD-KGFDSVREVYGNLSNIAIITLAPEL----AGSMEVIDKLVEQG 153 (417)
Q Consensus 79 ~~~~~~~~~~G~~leGp~~~~~~~G~~~~~~~~~~~-~~~~~~~~~~g~~~~ik~~~~~pe~----~~~~~~i~~~~~~g 153 (417)
..+ ++...|...+. ..-+..-...+ ++++++.+.-+ .-.+|.+.--|.. ....+.++.+++.|
T Consensus 108 -----~~d---~~~~~~s~vp~---~~~e~~g~~~~~~~i~~~~~~~~-V~glke~m~~~~v~~~d~~~l~~i~~a~~~g 175 (552)
T TIGR01178 108 -----PLN---FYFMLPSCVPA---LQFETSGAVLTAEDIDELMELDE-VLGLAEVMDYPGVINADIEMLNKINSARKRN 175 (552)
T ss_pred -----CcE---EEEECCCCCCC---CcccCCCCccCHHHHHHHHcCCC-ccEEEEEecchhhcCCCHHHHHHHHHHHhCC
Confidence 122 34433422221 10000001112 45566654312 1124655433431 23457777888888
Q ss_pred CeeeecCCc-CCHHHHHHHHHCCCCeEeeCCCCcccccccCCceEEeecCCCCCCCceEEEEecCCCcCCHHHHHHHHhh
Q psy12256 154 ITVSLGHSS-ADINIAEEAVRHGASLITHLFNAMLPFHHRDPGIIGLLSSDNIDSSKVYYGIIADGVHTHPSALRIANST 232 (417)
Q Consensus 154 i~v~~GH~~-~~~~~~~~a~~~G~~~i~Hl~~~~~~~~~r~~g~~~~~~~~~l~~~~~~~~~i~dg~h~~~~~~~~~~~~ 232 (417)
..+. ||.+ .+..+......+|.
T Consensus 176 ~~I~-gHap~l~~~eL~~~~~aGi-------------------------------------------------------- 198 (552)
T TIGR01178 176 KVID-GHCPGLSGKLLNKYISAGI-------------------------------------------------------- 198 (552)
T ss_pred CEEE-ecCCCCCHHHHHHHHHcCC--------------------------------------------------------
Confidence 8775 6886 23333333333332
Q ss_pred CCCCCCCCCHHHHHHHHHccceeeeccccccCCCCCCCCccccccccccccCCcceeeeeCCceeeChHHHHHHHhcCCC
Q psy12256 233 HPEGHSSADIHIAEEAVRHGASLITHLFNAMLPFHHRDPGIIGLLSSDNIDSSKVYYGIIADGVHTHPSALRIANSTHPE 312 (417)
Q Consensus 233 ~~~~h~~~~~e~~~~a~~~g~~~~td~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~i~dg~~~~~~~l~~~~~~~~~ 312 (417)
...|+..+.|++.++++.|+.+.- |+ |+. .+......+...+....
T Consensus 199 -~~dHe~~s~~ea~e~~~~Gm~~~i-----------r~----gs~------------------~~n~~~~~~~~~~~~~~ 244 (552)
T TIGR01178 199 -SNDHESTSIEEAREKLRLGMKLMI-----------RE----GSA------------------AKNLEALHPLINEKNCR 244 (552)
T ss_pred -CCCcCcCCHHHHHHHHHCCCEEEE-----------eC----Ccc------------------ccCHHHHHHHHhhcCCc
Confidence 234677778899999999977651 11 110 11223333334333446
Q ss_pred CeEEeeCCeeeeeeecccccceeeCCCCCCCCCCCchhHHHHHhhhccCCCHHHHHHHHhHHHHHHcCCCCCccccccCC
Q psy12256 313 GSITPFNGCVQFFMRSTRCSLWFDLGNCNNGGSITPFNGCVQFFMRSTRCSLVHALEVASLHPAKALGLEQHKGTLDFGA 392 (417)
Q Consensus 313 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~l~~~t~~pA~~l~l~~~~G~l~~G~ 392 (417)
++.+++|+..++ .+...+ .|...++.+++. |+++.++++|+|.|||+++|+++ .|+|+||+
T Consensus 245 ~~~l~TD~~~~~----------~~~~~g-------~l~~~v~~ai~~-g~~~~~Al~maT~npA~~lgl~~-~G~I~pG~ 305 (552)
T TIGR01178 245 SLMLCTDDRHVN----------DILNEG-------HINHIVRRAIEH-GVDPFDALQMASINPAEHFGIDV-GGLIAPGD 305 (552)
T ss_pred eEEEEeCCCChh----------HHHhcC-------CHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHcCCCC-CcccCCCC
Confidence 688889865421 111222 477888888875 89999999999999999999986 79999999
Q ss_pred CccEEEEc--CCCceeEEEECCEEec
Q psy12256 393 DADFVILD--EGLHVYSTWIAGDLKL 416 (417)
Q Consensus 393 ~ADlvv~d--~~~~v~~v~~~G~~v~ 416 (417)
.|||+++| .+.++..||++|+++.
T Consensus 306 ~ADlvvl~~l~~~~v~~v~~~G~~v~ 331 (552)
T TIGR01178 306 PADFVILKDLRNFKVNKTYVKGKLLD 331 (552)
T ss_pred cCCEEEECCCCCceEEEEEECCEEEc
Confidence 99999999 5789999999999875
No 16
>PRK08417 dihydroorotase; Provisional
Probab=99.89 E-value=2.1e-21 Score=193.30 Aligned_cols=78 Identities=23% Similarity=0.402 Sum_probs=67.8
Q ss_pred CCCCCCCCCCchhHHHHHhhhccCCCHHHHHHHHhHHHHHHcCCCCCccccccCCCccEEEEcCC---------------
Q psy12256 338 GNCNNGGSITPFNGCVQFFMRSTRCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILDEG--------------- 402 (417)
Q Consensus 338 ~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~l~~~t~~pA~~l~l~~~~G~l~~G~~ADlvv~d~~--------------- 402 (417)
...++.|....+...++.+++++++++.++++++|.|||++||++ .|+|++|++|||+++|.+
T Consensus 291 a~~G~~g~e~~~~~~~~~~v~~~~~~~~~~~~~~t~~pA~~lgl~--~G~l~~G~~ADlvi~d~~~~~~~~~~~~p~~g~ 368 (386)
T PRK08417 291 AAFGIDSICEYFSLCYTYLVKEGIITWSELSRFTSYNPAQFLGLN--SGEIEVGKEADLVLFDPNESTIIDDNFSLYSGD 368 (386)
T ss_pred CCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhCCC--CCccCCCCcCCEEEEcCCCCeEeCCCCCCccCC
Confidence 455677777888888888888878999999999999999999995 399999999999999964
Q ss_pred ---CceeEEEECCEEecC
Q psy12256 403 ---LHVYSTWIAGDLKLT 417 (417)
Q Consensus 403 ---~~v~~v~~~G~~v~~ 417 (417)
.+|..||++|+++|.
T Consensus 369 ~~~g~v~~tiv~G~~v~~ 386 (386)
T PRK08417 369 ELYGKIEAVIIKGKLYLE 386 (386)
T ss_pred EEeccEEEEEECCEEEeC
Confidence 368899999999974
No 17
>PRK15446 phosphonate metabolism protein PhnM; Provisional
Probab=99.88 E-value=1.9e-20 Score=185.94 Aligned_cols=64 Identities=23% Similarity=0.376 Sum_probs=56.5
Q ss_pred HHHhhhccCCCHHHHHHHHhHHHHHHcCCCCCccccccCCCccEEEEcCC---CceeEEEECCEEecC
Q psy12256 353 VQFFMRSTRCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILDEG---LHVYSTWIAGDLKLT 417 (417)
Q Consensus 353 ~~~~~~~~~~~~~~~l~~~t~~pA~~l~l~~~~G~l~~G~~ADlvv~d~~---~~v~~v~~~G~~v~~ 417 (417)
+..+....++++.++++++|.|||+++|+++ +|+|++|++|||+++|.+ .++..||++|+++|.
T Consensus 315 ~~~~~~~~gls~~~al~~~T~npA~~lgl~~-~G~I~~G~~ADlvv~d~~~~~~~v~~v~~~G~~v~~ 381 (383)
T PRK15446 315 AFRLADDGGLDLPQAVALVTANPARAAGLDD-RGEIAPGKRADLVRVRRAGGLPVVRAVWRGGRRVFL 381 (383)
T ss_pred HHHHHHhcCCCHHHHHHHHhHHHHHHcCCCC-CcCcCCCCcCCEEEEcCCCCCcchheEEECCEEEEe
Confidence 3344445689999999999999999999976 599999999999999988 789999999999873
No 18
>TIGR02318 phosphono_phnM phosphonate metabolism protein PhnM. This family consists of proteins from in the PhnM family. PhnM is a a protein associated with phosphonate utilization in a number of bacterial species. In Pseudomonas stutzeri WM88, a protein that is part of a system for the oxidation of phosphites (another form of reduced phosphorous compound) scores between trusted and noise cutoffs.
Probab=99.87 E-value=5.9e-20 Score=181.90 Aligned_cols=65 Identities=25% Similarity=0.407 Sum_probs=55.4
Q ss_pred HHHHHhhhccCCCHHHHHHHHhHHHHHHcCCCCCccccccCCCccEEEEcCC---CceeEEEECCEEec
Q psy12256 351 GCVQFFMRSTRCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILDEG---LHVYSTWIAGDLKL 416 (417)
Q Consensus 351 ~~~~~~~~~~~~~~~~~l~~~t~~pA~~l~l~~~~G~l~~G~~ADlvv~d~~---~~v~~v~~~G~~v~ 416 (417)
..+.......++++.++++++|.|||+.+|+++ +|+|++|++|||+++|.. .++..||++|+++|
T Consensus 309 ~~~~~~~~~~gl~~~~al~~~T~npA~~lgl~~-~G~I~~G~~ADlvvvd~~~~~~~v~~v~~~G~~v~ 376 (376)
T TIGR02318 309 AAFQLADDVEGIPLPQAVKMVTKNPARAVGLSD-RGSIAPGKRADLVRVHRVDGVPRIRAVWRAGRRVY 376 (376)
T ss_pred HHHHHHHhhcCCCHHHHHHHHhHHHHHHcCCCC-CCcCCCCCcccEEEEcCCCCCccceEEEECCEEeC
Confidence 334444433479999999999999999999974 799999999999999985 37999999999986
No 19
>PRK08323 phenylhydantoinase; Validated
Probab=99.87 E-value=4.5e-21 Score=195.73 Aligned_cols=352 Identities=16% Similarity=0.140 Sum_probs=178.9
Q ss_pred CCeEEeCCCCEeeccchhhcccCCCCCCCCCCCCCcHHHHHHHHHHHHhCCceeeeeccCCCCHHHHHHHHHHHHcCCCC
Q psy12256 2 ADFRFDCGGKLIAPGFIDIQINGGFGVDFSHDIDSVDKNVSIVARGILAHGVTSFCPTLVTSEPQVYKKVLSRLRKTPGG 81 (417)
Q Consensus 2 ~~~vID~~G~~v~PG~ID~H~H~~~g~~~~~~~~~~~~~~~~~~~~~~~~GvTt~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (417)
+.++||++|++|+|||||+|+|+...... . ...++++..++.++++||||++++..+.+...+.+.++........
T Consensus 36 ~~~viD~~g~~v~PGlID~H~H~~~~~~~-~---~~~e~~~~~~~~a~~~GvTt~~d~~~~~~~~~~~~~~~~~~~~~~~ 111 (459)
T PRK08323 36 GDEVIDATGKYVMPGGIDPHTHMEMPFGG-T---VSSDDFETGTRAAACGGTTTIIDFALQPKGQSLREALEAWHGKAAG 111 (459)
T ss_pred CceEEECCCCEEeccEEeeeeccccccCC-c---cccCcHHHHHHHHHhCCCCEEEeCcCCCCCCChHHHHHHHHHHhcc
Confidence 35789999999999999999998542211 1 1245678888899999999999998776655566666555443211
Q ss_pred CCCceeEEeeeeCCCCCCCCCCCCCCcccCCCcHHHHHHHHHhCCCCCEEEEEecCC---C--CChHHHHHHHHHCCCee
Q psy12256 82 KHGATVLGAHVEGPFISPDKKGAHSLSKIVTFDKGFDSVREVYGNLSNIAIITLAPE---L--AGSMEVIDKLVEQGITV 156 (417)
Q Consensus 82 ~~~~~~~G~~leGp~~~~~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~ik~~~~~pe---~--~~~~~~i~~~~~~gi~v 156 (417)
.....+|++..... . +.+.+ ++++++.+ .| ...+|++...+. . +...++++.++++|..+
T Consensus 112 -~~~~d~~~~~~~~~-------~-~~~~~----~~~~~~~~-~g-~~~ik~~~~~~~~~~~s~~~l~~~~~~a~~~g~~v 176 (459)
T PRK08323 112 -KAVIDYGFHMIITD-------W-NEVVL----DEMPELVE-EG-ITSFKLFMAYKGALMLDDDELLRALQRAAELGALP 176 (459)
T ss_pred -CceEEEEEEEEecC-------C-cHHHH----HHHHHHHH-cC-CCEEEEEEecCCCCCCCHHHHHHHHHHHHhcCCEE
Confidence 22334455542110 0 00000 34455543 23 345676532111 1 22467888999999999
Q ss_pred eecCCcCCHHHHHHH----HHCCCCeEeeCCCCcccccccCCceEEeecCCCCCCCceEEEEecCCCcCCHHHHHHHHhh
Q psy12256 157 SLGHSSADINIAEEA----VRHGASLITHLFNAMLPFHHRDPGIIGLLSSDNIDSSKVYYGIIADGVHTHPSALRIANST 232 (417)
Q Consensus 157 ~~GH~~~~~~~~~~a----~~~G~~~i~Hl~~~~~~~~~r~~g~~~~~~~~~l~~~~~~~~~i~dg~h~~~~~~~~~~~~ 232 (417)
.. |++ +.+.+... .+.|.......... .|...... .+ .+.++++...
T Consensus 177 ~~-H~e-~~~~~~~~~~~~~~~g~~~~~~~~~~-------~p~~~e~~--------~v------------~~~~~~a~~~ 227 (459)
T PRK08323 177 MV-HAE-NGDAIAYLQAKLLAEGKTGPEYHALS-------RPPEVEGE--------AT------------NRAIMLAELA 227 (459)
T ss_pred EE-EcC-ChHHHHHHHHHHHHcCCCChhhhhcc-------CCHHHHHH--------HH------------HHHHHHHHHh
Confidence 86 874 44443322 23353322110000 01000000 00 0122222222
Q ss_pred C---CCCCC--CCCHHHHHHHHHccceee-eccccccCCCCCCCCccccccccccccCC----cceeeeeCCceeeChHH
Q psy12256 233 H---PEGHS--SADIHIAEEAVRHGASLI-THLFNAMLPFHHRDPGIIGLLSSDNIDSS----KVYYGIIADGVHTHPSA 302 (417)
Q Consensus 233 ~---~~~h~--~~~~e~~~~a~~~g~~~~-td~~~~~~~~~~r~~~~~~~~~~~~~~~~----~~~~~~i~dg~~~~~~~ 302 (417)
. -+.|. ..+.+.++.+.+.|..+. .++-. ...+... .+... .....+-+. .. ....
T Consensus 228 ~~~~~i~H~s~~~~~~~i~~ak~~g~~vt~e~~p~-~l~l~~~-----------~~~~~~~~~g~~~k~~pP-lr-~~~~ 293 (459)
T PRK08323 228 GAPLYIVHVSCKEALEAIRRARARGQRVFGETCPQ-YLLLDES-----------EYDGPDWFEGAKYVMSPP-LR-DKEH 293 (459)
T ss_pred CCCEEEEeCCCHHHHHHHHHHHHCCCeEEEEcCcc-ceeecHH-----------HhcCCccccccceEECCC-CC-ChHH
Confidence 1 12232 123345555666664432 11100 0000000 00000 000000000 00 0001
Q ss_pred HHHHHhcCC--CCeEEeeCCeeeeeeecccc--cceeeCCCCCCCCCCCchhHHHHHhhhccCCCHHHHHHHHhHHHHHH
Q psy12256 303 LRIANSTHP--EGSITPFNGCVQFFMRSTRC--SLWFDLGNCNNGGSITPFNGCVQFFMRSTRCSLVHALEVASLHPAKA 378 (417)
Q Consensus 303 l~~~~~~~~--~~~~~~~d~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~l~~~t~~pA~~ 378 (417)
...+++.-. ....+.+|+... ....... ..++.....++.|....+...++..+....++++++++++|.|||++
T Consensus 294 ~~~l~~~l~~G~i~~i~sDh~p~-~~~~~~~~~~~~~~~~p~G~~~~e~~~~~l~~~~~~~~~~~~~~~~~~~t~~pA~~ 372 (459)
T PRK08323 294 QDALWRGLQDGDLQVVATDHCPF-CFEQKKQLGRGDFTKIPNGTPGVEDRMPLLFSEGVMTGRITLNRFVELTSTNPAKI 372 (459)
T ss_pred HHHHHHHhhcCCeeEEECCCCCC-ChHHhcccccCCHhhCCCCcchHhhhHHHHHHHHHHcCCCCHHHHHHHHhhHHHHH
Confidence 111111111 123555666541 1000000 00000122344555566666666666666799999999999999999
Q ss_pred cCCCCCccccccCCCccEEEEcCC-------------------------CceeEEEECCEEec
Q psy12256 379 LGLEQHKGTLDFGADADFVILDEG-------------------------LHVYSTWIAGDLKL 416 (417)
Q Consensus 379 l~l~~~~G~l~~G~~ADlvv~d~~-------------------------~~v~~v~~~G~~v~ 416 (417)
||+.+++|+|++|+.|||++||++ .+|..||++|+++|
T Consensus 373 lgl~~~~G~l~~G~~ADlvi~d~~~~~~v~~~~~~s~~~~s~~~g~~~~g~v~~viv~G~~v~ 435 (459)
T PRK08323 373 FGLYPRKGTIAVGADADIVIWDPNATKTISASTLHSNVDYNPYEGFEVTGWPVTTLSRGEVVV 435 (459)
T ss_pred hCCCCCCcccCCCCcCCEEEEcCCcccccCHHHHhhcCCCCcccCcEEeeeEEEEEECCEEEE
Confidence 999655899999999999999964 35779999999986
No 20
>cd01314 D-HYD D-hydantoinases (D-HYD) also called dihydropyrimidases (DHPase) and related proteins; DHPases are a family of enzymes that catalyze the reversible hydrolytic ring opening of the amide bond in five- or six-membered cyclic diamides, like dihydropyrimidine or hydantoin. The hydrolysis of dihydropyrimidines is the second step of reductive catabolism of pyrimidines in human. The hydrolysis of 5-substituted hydantoins in microorganisms leads to enantiomerically pure N-carbamyl amino acids, which are used for the production of antibiotics, peptide hormones, pyrethroids, and pesticides. HYDs are classified depending on their stereoselectivity. This family also includes collapsin response regulators (CRMPs), cytosolic proteins involved in neuronal differentiation and axonal guidance which have strong homology to DHPases, but lack most of the active site residues.
Probab=99.87 E-value=1.3e-20 Score=191.69 Aligned_cols=78 Identities=29% Similarity=0.282 Sum_probs=67.0
Q ss_pred CCCCCCCCCchhHHHHHhhhccCCCHHHHHHHHhHHHHHHcCCCCCccccccCCCccEEEEcCC----------------
Q psy12256 339 NCNNGGSITPFNGCVQFFMRSTRCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILDEG---------------- 402 (417)
Q Consensus 339 ~~~~~g~~~~l~~~~~~~~~~~~~~~~~~l~~~t~~pA~~l~l~~~~G~l~~G~~ADlvv~d~~---------------- 402 (417)
..++.|....+...++.+++...++++++++++|.|||++||+.+++|+|++|++|||+|+|.+
T Consensus 333 ~~G~~g~e~~l~~l~~~~~~~~~~~~~~~~~~~t~~pA~~~gl~~~~G~l~~G~~AD~vi~d~~~~~~~~~~~~~~~~~~ 412 (447)
T cd01314 333 PNGVPGVETRMPLLWSEGVAKGRITLEKFVELTSTNPAKIFGLYPRKGTIAVGSDADLVIWDPNAEKTISADTHHHNVDY 412 (447)
T ss_pred CCCCchHhhhHHHHHHHHHHcCCCCHHHHHHHHhhHHHHHhCCCCCCCccCCCCcCCEEEEeCCcCEEecHHHhhccCCC
Confidence 4556676777777777777666799999999999999999999766899999999999999964
Q ss_pred ---------CceeEEEECCEEec
Q psy12256 403 ---------LHVYSTWIAGDLKL 416 (417)
Q Consensus 403 ---------~~v~~v~~~G~~v~ 416 (417)
.+|..||++|+++|
T Consensus 413 ~~~~g~~~~g~v~~t~v~G~~v~ 435 (447)
T cd01314 413 NIFEGMKVKGWPVVTISRGKVVV 435 (447)
T ss_pred CcccCeEEeeeEEEEEECCEEEE
Confidence 36899999999987
No 21
>COG3964 Predicted amidohydrolase [General function prediction only]
Probab=99.87 E-value=1.3e-20 Score=171.81 Aligned_cols=286 Identities=19% Similarity=0.228 Sum_probs=169.0
Q ss_pred CeEEeCCCCEeeccchhhcccCCCCCCCCCCCCCcHHHHHHHHHHHHhCCceeeeeccCCCCHHHHHHHHHHHHcCCCCC
Q psy12256 3 DFRFDCGGKLIAPGFIDIQINGGFGVDFSHDIDSVDKNVSIVARGILAHGVTSFCPTLVTSEPQVYKKVLSRLRKTPGGK 82 (417)
Q Consensus 3 ~~vID~~G~~v~PG~ID~H~H~~~g~~~~~~~~~~~~~~~~~~~~~~~~GvTt~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (417)
.++||++|++|.|||||.|+|.+++..--... ++ ...++.||||+.|....+.. ++....+.+.+.
T Consensus 45 tq~Ida~Gc~VspG~iDlHvHvy~ggt~~~v~---pd------~~ga~~GvTTvVDAGSaGaa-nf~gF~r~vie~---- 110 (386)
T COG3964 45 TQIIDADGCIVSPGLIDLHVHVYYGGTEGGVR---PD------MYGAPNGVTTVVDAGSAGAA-NFDGFYRTVIEA---- 110 (386)
T ss_pred heEEccCccEeccCeeeeeeEEecCCCccCcC---HH------HccccCCceEEEecCCcCcc-chhhHHHHhhcc----
Confidence 58999999999999999999998764322211 22 33678999999998665432 233222233332
Q ss_pred CCceeEEeeeeCCCCCCCCCCCCCCcccCCCc----HHHHHHHHHhCCCCCE---EEE--Eec-CCC--CChHHHHHHHH
Q psy12256 83 HGATVLGAHVEGPFISPDKKGAHSLSKIVTFD----KGFDSVREVYGNLSNI---AII--TLA-PEL--AGSMEVIDKLV 150 (417)
Q Consensus 83 ~~~~~~G~~leGp~~~~~~~G~~~~~~~~~~~----~~~~~~~~~~g~~~~i---k~~--~~~-pe~--~~~~~~i~~~~ 150 (417)
..-+|+. |+|-...|..-.+...+++ +.+.+..++ ..+.| |+- +.. .++ .......+.+.
T Consensus 111 Sr~RI~A------flnvs~~Gl~a~nE~~d~~nid~d~i~aa~re--h~d~ivGlKvR~s~~~~g~~GitPl~la~~ia~ 182 (386)
T COG3964 111 SRVRIKA------FLNVSPPGLTASNELYDPDNIDEDKIHAAFRE--HRDVIVGLKVRVSTEDIGEYGITPLTLALRIAN 182 (386)
T ss_pred hhheeee------eeeccCcceeeehhhCChhhCCHHHHHHHHHh--CcCcEEEEEEEeeeccccccCCchHHHHHHHHh
Confidence 1234554 2222222321222333333 222222232 23444 321 111 121 11234455555
Q ss_pred HCCCe--eeecCCcCCHHHHHHHHHCCCCeEeeCCCCcccccccCCceEEeecCCCCCCCceEEEEecCCCcCCHHHHHH
Q psy12256 151 EQGIT--VSLGHSSADINIAEEAVRHGASLITHLFNAMLPFHHRDPGIIGLLSSDNIDSSKVYYGIIADGVHTHPSALRI 228 (417)
Q Consensus 151 ~~gi~--v~~GH~~~~~~~~~~a~~~G~~~i~Hl~~~~~~~~~r~~g~~~~~~~~~l~~~~~~~~~i~dg~h~~~~~~~~ 228 (417)
..+++ +.+||.+..++|+.+-+..| +.+||+||+.+.-.-+ .||.-. ..++.
T Consensus 183 ~~klPlmvHigePp~~~dEvlerL~~G-DIitHcfngkpn~~l~-----------------------~dg~vr--~~vrr 236 (386)
T COG3964 183 DLKLPLMVHIGEPPVLMDEVLERLRRG-DIITHCFNGKPNTILT-----------------------DDGVVR--AEVRR 236 (386)
T ss_pred hcCCceEEecCCCCccHHHHHHhccCC-ceeeeeccCCCCCccc-----------------------cchhHH--HHHHH
Confidence 55554 45567666778998888888 9999999987532111 122111 22233
Q ss_pred HHhh---CCCCCC--CCCHHHHHHHHHccceeeeccccccCCCCCCCCccccccccccccCCcceeeeeCCceeeChHHH
Q psy12256 229 ANST---HPEGHS--SADIHIAEEAVRHGASLITHLFNAMLPFHHRDPGIIGLLSSDNIDSSKVYYGIIADGVHTHPSAL 303 (417)
Q Consensus 229 ~~~~---~~~~h~--~~~~e~~~~a~~~g~~~~td~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~i~dg~~~~~~~l 303 (417)
+... ...+|. +++|..++.|+++|+.- |
T Consensus 237 a~erGV~fD~ghG~asfsf~vAr~aia~GllP--~--------------------------------------------- 269 (386)
T COG3964 237 ARERGVIFDAGHGRASFSFNVARRAIANGLLP--D--------------------------------------------- 269 (386)
T ss_pred HHhcceEEEccCCcceeeHHHHHHHHhcCCCc--c---------------------------------------------
Confidence 3322 256775 56667788888777431 1
Q ss_pred HHHHhcCCCCeEEeeCCeeeeeeecccccceeeCCCCCCCCCCCchhHHHHHhhhccCCCHHHHHHHHhHHHHHHcCCCC
Q psy12256 304 RIANSTHPEGSITPFNGCVQFFMRSTRCSLWFDLGNCNNGGSITPFNGCVQFFMRSTRCSLVHALEVASLHPAKALGLEQ 383 (417)
Q Consensus 304 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~l~~~t~~pA~~l~l~~ 383 (417)
++.||-. +...+.|..+++...+.++.. .||++.++++.+|.|||..+++..
T Consensus 270 -----------~ISSDlh----------------~~~~~n~Pv~dla~~mSKlla-lgmpl~~Vi~avT~npA~~i~l~~ 321 (386)
T COG3964 270 -----------IISSDLH----------------TITKLNGPVYDLAWIMSKLLA-LGMPLTDVINAVTHNPAVLIGLAE 321 (386)
T ss_pred -----------eeeccce----------------eeeecCchHHHHHHHHHHHHH-cCCcHHHHHHHHhcCHHHHhCccc
Confidence 1112211 112344556677788888886 599999999999999999999985
Q ss_pred CccccccCCCccEEEEc-CCCceeEEEECC
Q psy12256 384 HKGTLDFGADADFVILD-EGLHVYSTWIAG 412 (417)
Q Consensus 384 ~~G~l~~G~~ADlvv~d-~~~~v~~v~~~G 412 (417)
+|+|+||..|||++|+ .+..++.|=.+|
T Consensus 322 -~gtLa~G~~aD~tvf~lk~~~~e~vDa~g 350 (386)
T COG3964 322 -IGTLAPGAFADITVFKLKNRHVEFVDAHG 350 (386)
T ss_pred -cCccCCCcccceEEEEeccCceEEEeccC
Confidence 9999999999999999 445555555444
No 22
>PRK09236 dihydroorotase; Reviewed
Probab=99.87 E-value=2.4e-20 Score=189.23 Aligned_cols=76 Identities=21% Similarity=0.279 Sum_probs=61.6
Q ss_pred CCCCCCCCCchhHHHHHhhhccCCCHHHHHHHHhHHHHHHcCCCCCccccccCCCccEEEEcCC----------------
Q psy12256 339 NCNNGGSITPFNGCVQFFMRSTRCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILDEG---------------- 402 (417)
Q Consensus 339 ~~~~~g~~~~l~~~~~~~~~~~~~~~~~~l~~~t~~pA~~l~l~~~~G~l~~G~~ADlvv~d~~---------------- 402 (417)
..++.|....+...++ .+.+.+++++++++++|.|||++||+++ +|+|++|++|||+++|++
T Consensus 326 ~~G~~~~e~~l~~l~~-~v~~~~~~~~~~~~~~t~~pA~~lgl~~-~G~l~~G~~ADlvi~d~~~~~~~~~~~~~s~~~~ 403 (444)
T PRK09236 326 PSGLPLVQHALPALLE-LVHEGKLSLEKVVEKTSHAPAILFDIKE-RGFIREGYWADLVLVDLNSPWTVTKENILYKCGW 403 (444)
T ss_pred CCCcccHHHHHHHHHH-HHHhcCCCHHHHHHHHHHhHHHhcCCCC-CCccccCCcCCEEEEcCCCCEEEchHHhcccCCC
Confidence 3445555555555554 4555689999999999999999999964 799999999999999964
Q ss_pred ---------CceeEEEECCEEec
Q psy12256 403 ---------LHVYSTWIAGDLKL 416 (417)
Q Consensus 403 ---------~~v~~v~~~G~~v~ 416 (417)
.+|..||++|+++|
T Consensus 404 sp~~g~~~~g~v~~t~v~G~~v~ 426 (444)
T PRK09236 404 SPFEGRTFRSRVATTFVNGQLVY 426 (444)
T ss_pred CCCCCCEEeeeEEEEEECCEEEE
Confidence 26899999999987
No 23
>PRK12394 putative metallo-dependent hydrolase; Provisional
Probab=99.86 E-value=2.5e-19 Score=178.22 Aligned_cols=70 Identities=21% Similarity=0.259 Sum_probs=59.6
Q ss_pred CchhHHHHHhhhccCCCHHHHHHHHhHHHHHHcCCCCCccccccCCCccEEEEcCC-------------------CceeE
Q psy12256 347 TPFNGCVQFFMRSTRCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILDEG-------------------LHVYS 407 (417)
Q Consensus 347 ~~l~~~~~~~~~~~~~~~~~~l~~~t~~pA~~l~l~~~~G~l~~G~~ADlvv~d~~-------------------~~v~~ 407 (417)
..|...++.+.+ .+++++++++|+|.|||+++|+++++|.|++|+.|||+++|.+ .+|..
T Consensus 287 ~~l~~~~~~~~~-~~~~~~~~~~~at~~~a~~~g~~~~~G~i~~G~~ADl~~~~~~~~~~~~~d~~g~~~~~~~~~~v~~ 365 (379)
T PRK12394 287 YSLPWVLSKYLA-LGMALEDVINACTHTPAVLMGMAAEIGTLAPGAFADIAIFKLKNRHVEFADIHGETLTGTHVLVPQM 365 (379)
T ss_pred chHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHhCCCCCCCccCCCCccCEEEEecCcCcceeccCCCCEEEeeeecceEE
Confidence 356666776665 5899999999999999999999745899999999999999954 26899
Q ss_pred EEECCEEecC
Q psy12256 408 TWIAGDLKLT 417 (417)
Q Consensus 408 v~~~G~~v~~ 417 (417)
||++|+++|.
T Consensus 366 t~v~G~~v~~ 375 (379)
T PRK12394 366 TIKSGEILYR 375 (379)
T ss_pred EEECCEEEEe
Confidence 9999999873
No 24
>PRK07627 dihydroorotase; Provisional
Probab=99.86 E-value=2.9e-20 Score=186.97 Aligned_cols=76 Identities=26% Similarity=0.352 Sum_probs=61.6
Q ss_pred CCCCCCCCCchhHHHHHhhhccCCCHHHHHHHHhHHHHHHcCCCCCccccccCCCccEEEEcCC----------------
Q psy12256 339 NCNNGGSITPFNGCVQFFMRSTRCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILDEG---------------- 402 (417)
Q Consensus 339 ~~~~~g~~~~l~~~~~~~~~~~~~~~~~~l~~~t~~pA~~l~l~~~~G~l~~G~~ADlvv~d~~---------------- 402 (417)
..++.|....+...+..+. ..+++++++++++|.|||+++|+ + +|+|++|++|||+++|.+
T Consensus 323 ~~G~~g~e~~~pl~~~~~~-~~~i~~~~~l~~~t~~pA~~lg~-~-~G~l~~G~~ADlvv~d~~~~~~v~~~~~~s~~~~ 399 (425)
T PRK07627 323 TPGATGLELLLPLTLKWAD-EAKVPLARALARITSAPARVLGL-P-AGRLAEGAPADLCVFDPDAHWRVEPRALKSQGKN 399 (425)
T ss_pred CCCceeHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHHhCC-C-CCcccCCCcCCEEEECCCCcEEEChhhccccCCC
Confidence 3445565555554555544 46899999999999999999999 3 699999999999999975
Q ss_pred ---------CceeEEEECCEEecC
Q psy12256 403 ---------LHVYSTWIAGDLKLT 417 (417)
Q Consensus 403 ---------~~v~~v~~~G~~v~~ 417 (417)
.+|..||++|+++|.
T Consensus 400 sp~~g~~~~g~v~~t~v~G~~v~~ 423 (425)
T PRK07627 400 TPFLGYELPGRVRATLVAGQVAFE 423 (425)
T ss_pred CCCcCCEeeeEEEEEEECCEEEee
Confidence 369999999999873
No 25
>PRK04250 dihydroorotase; Provisional
Probab=99.86 E-value=4.8e-20 Score=183.78 Aligned_cols=75 Identities=21% Similarity=0.274 Sum_probs=62.2
Q ss_pred CCCCCCCCCchhHHHHHhhhccCCCHHHHHHHHhHHHHHHcCCCCCccccccCCCccEEEEcCC----------------
Q psy12256 339 NCNNGGSITPFNGCVQFFMRSTRCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILDEG---------------- 402 (417)
Q Consensus 339 ~~~~~g~~~~l~~~~~~~~~~~~~~~~~~l~~~t~~pA~~l~l~~~~G~l~~G~~ADlvv~d~~---------------- 402 (417)
..++.|..+.+...+. +++.+.++++++++++|.|||++||+++ +| |++|++|||+++|++
T Consensus 285 ~~G~~g~e~~lpl~~~-~v~~~~lsl~~~v~~~t~npAk~lgl~~-~G-L~~G~~ADlvi~D~~~~~~v~~~~~~s~~~~ 361 (398)
T PRK04250 285 AAGIPGLETEVPLLLD-AANKGMISLFDIVEKMHDNPARIFGIKN-YG-IEEGNYANFAVFDMKKEWTIKAEELYTKAGW 361 (398)
T ss_pred CCCcchHHHHHHHHHH-HHHhcCCCHHHHHHHHHHHHHHHhCCCC-cC-ccCCCcCCEEEEcCCCcEEEChhhccccCCC
Confidence 3455666666666664 5666789999999999999999999965 79 999999999999964
Q ss_pred ---------CceeEEEECCEEec
Q psy12256 403 ---------LHVYSTWIAGDLKL 416 (417)
Q Consensus 403 ---------~~v~~v~~~G~~v~ 416 (417)
.+|..||++|+++|
T Consensus 362 sp~~g~~l~g~v~~tiv~G~~v~ 384 (398)
T PRK04250 362 TPYEGFKLKGKVIMTILRGEVVM 384 (398)
T ss_pred CCCCCCEEeeEEEEEEECCEEEE
Confidence 26789999999987
No 26
>TIGR00857 pyrC_multi dihydroorotase, multifunctional complex type. All proteins described by this model should represent active and inactive dihydroorotase per se and functionally equivalent domains of multifunctional proteins from higher eukaryotes, but exclude related proteins such as allantoinase.
Probab=99.86 E-value=6.2e-20 Score=184.37 Aligned_cols=78 Identities=26% Similarity=0.326 Sum_probs=62.5
Q ss_pred CCCCCCCCCCchhHHHHHhhhccCCCHHHHHHHHhHHHHHHcCCCCCccccccCCCccEEEEcCC---------------
Q psy12256 338 GNCNNGGSITPFNGCVQFFMRSTRCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILDEG--------------- 402 (417)
Q Consensus 338 ~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~l~~~t~~pA~~l~l~~~~G~l~~G~~ADlvv~d~~--------------- 402 (417)
...++.|....+...+..+. ..+++++++++++|.|||+++|+++ +|.|++|+.|||+++|.+
T Consensus 308 ~~~G~~g~e~~~~~~~~~~~-~~~~~~~~~~~~~t~~pa~~~g~~~-~G~l~~G~~ADlvi~d~~~~~~~~~~~~~~~~~ 385 (411)
T TIGR00857 308 APPGIPGLETALPLLLQLLV-KGLISLKDLIRMLSINPARIFGLPD-KGTLEEGNPADITVFDLKKEWTINAETFYSKAK 385 (411)
T ss_pred CCCCceeHHHHHHHHHHHHH-hCCCCHHHHHHHHhHHHHHHhCCCC-CCccCCCCcCCEEEEcCCCCEEEchHHCccCCC
Confidence 34455565565666564444 4589999999999999999999975 599999999999999964
Q ss_pred ----------CceeEEEECCEEecC
Q psy12256 403 ----------LHVYSTWIAGDLKLT 417 (417)
Q Consensus 403 ----------~~v~~v~~~G~~v~~ 417 (417)
.+|..|+++|+++|.
T Consensus 386 ~sp~~g~~~~g~v~~tiv~G~~v~~ 410 (411)
T TIGR00857 386 NTPFEGMSLKGKPIATILRGKVVYE 410 (411)
T ss_pred CCCcCCCEEEeEEEEEEECCEEEec
Confidence 268899999999874
No 27
>PLN02942 dihydropyrimidinase
Probab=99.86 E-value=6.9e-20 Score=187.67 Aligned_cols=77 Identities=23% Similarity=0.212 Sum_probs=65.5
Q ss_pred CCCCCCCCchhHHHHHhhhccCCCHHHHHHHHhHHHHHHcCCCCCccccccCCCccEEEEcCC-----------------
Q psy12256 340 CNNGGSITPFNGCVQFFMRSTRCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILDEG----------------- 402 (417)
Q Consensus 340 ~~~~g~~~~l~~~~~~~~~~~~~~~~~~l~~~t~~pA~~l~l~~~~G~l~~G~~ADlvv~d~~----------------- 402 (417)
.++.|....+...++.+++...+++.++++++|.|||++||+.+++|+|++|++|||+++|++
T Consensus 340 ~G~~g~e~~l~~~~~~~~~~~~i~~~~~l~~~t~~pA~~lgl~~~~G~l~~G~~ADlv~vd~~~~~~v~~~~~~s~~~~~ 419 (486)
T PLN02942 340 NGVNGIEERMHLVWDTMVESGQISPTDYVRVTSTECAKIFNIYPRKGAILAGSDADIIILNPNSTFTISAKTHHSRIDTN 419 (486)
T ss_pred CCcccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhCCCCCCCCcCCCCcCCEEEEcCCccEEEcHHHccccCCCC
Confidence 445555556666777777766799999999999999999999766899999999999999964
Q ss_pred --------CceeEEEECCEEec
Q psy12256 403 --------LHVYSTWIAGDLKL 416 (417)
Q Consensus 403 --------~~v~~v~~~G~~v~ 416 (417)
.+|..||++|+++|
T Consensus 420 py~g~~l~g~v~~tiv~G~~v~ 441 (486)
T PLN02942 420 VYEGRRGKGKVEVTISQGRVVW 441 (486)
T ss_pred CccCcEeeeeEEEEEECCEEEE
Confidence 47999999999987
No 28
>PRK07575 dihydroorotase; Provisional
Probab=99.85 E-value=4.3e-20 Score=186.87 Aligned_cols=75 Identities=24% Similarity=0.343 Sum_probs=62.6
Q ss_pred CCCCCCCCchhHHHHHhhhccCCCHHHHHHHHhHHHHHHcCCCCCccccccCCCccEEEEcCC-----------------
Q psy12256 340 CNNGGSITPFNGCVQFFMRSTRCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILDEG----------------- 402 (417)
Q Consensus 340 ~~~~g~~~~l~~~~~~~~~~~~~~~~~~l~~~t~~pA~~l~l~~~~G~l~~G~~ADlvv~d~~----------------- 402 (417)
..++|....+...++.+. ..++|++++++++|.|||++||+++ +|+|++|++|||+++|++
T Consensus 321 ~G~~g~e~~l~~l~~~~~-~~~lsl~~~~~~~s~npAk~lgl~~-~G~L~~G~~ADlvi~D~~~~~~v~~~~~~s~~~~s 398 (438)
T PRK07575 321 SGMPGVETSLPLMLTAAM-RGKCTVAQVVRWMSTAVARAYGIPN-KGRIAPGYDADLVLVDLNTYRPVRREELLTKCGWS 398 (438)
T ss_pred CCcccHHHHHHHHHHHHh-cCCCCHHHHHHHHhhhHHHHcCCCC-CCccCCCCcCCEEEEcCCCCEEEchHHccccCCCC
Confidence 455666666777776654 5689999999999999999999954 699999999999999964
Q ss_pred --------CceeEEEECCEEec
Q psy12256 403 --------LHVYSTWIAGDLKL 416 (417)
Q Consensus 403 --------~~v~~v~~~G~~v~ 416 (417)
.++..||++|+++|
T Consensus 399 p~~g~~~~G~v~~tiv~G~~v~ 420 (438)
T PRK07575 399 PFEGWNLTGWPVTTIVGGQIVF 420 (438)
T ss_pred CCCCCEEeeEEEEEEECCEEEE
Confidence 24789999999986
No 29
>PRK08044 allantoinase; Provisional
Probab=99.85 E-value=8.4e-20 Score=185.13 Aligned_cols=79 Identities=23% Similarity=0.270 Sum_probs=70.8
Q ss_pred CCCCCCCCCCchhHHHHHhhhccCCCHHHHHHHHhHHHHHHcCCCCCccccccCCCccEEEEcCC---------------
Q psy12256 338 GNCNNGGSITPFNGCVQFFMRSTRCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILDEG--------------- 402 (417)
Q Consensus 338 ~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~l~~~t~~pA~~l~l~~~~G~l~~G~~ADlvv~d~~--------------- 402 (417)
..++++|....+...+++++++.+++++++++++|.|||++||+++ +|+|++|++|||+++|++
T Consensus 331 ~~~g~~g~e~~l~~~~~~~v~~~~l~~~~~v~~~s~npA~~lgl~~-~G~i~~G~~ADlvi~d~~~~~~v~~~~~~s~~~ 409 (449)
T PRK08044 331 AWGGIAGLQNCMDVMFDEAVQKRGMSLPMFGKLMATNAADIFGLQQ-KGRIAPGKDADFVFIQPNSSYVLKNEDLEYRHK 409 (449)
T ss_pred CCCCceEHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhHHHHhCCCC-CCcCCCCCccCEEEECCCCcEEECHHHccccCC
Confidence 4567889888899999899988899999999999999999999964 799999999999999975
Q ss_pred ----------CceeEEEECCEEecC
Q psy12256 403 ----------LHVYSTWIAGDLKLT 417 (417)
Q Consensus 403 ----------~~v~~v~~~G~~v~~ 417 (417)
++|..|+++|+++|.
T Consensus 410 ~sp~~G~~l~G~v~~t~~~G~~v~~ 434 (449)
T PRK08044 410 VSPYVGRTIGARITKTILRGDVIYD 434 (449)
T ss_pred CCCCCCCEEeeeEEEEEECCEEEEE
Confidence 469999999999873
No 30
>PRK06189 allantoinase; Provisional
Probab=99.85 E-value=6.5e-20 Score=186.39 Aligned_cols=77 Identities=27% Similarity=0.334 Sum_probs=65.9
Q ss_pred CCCCCCCCCchhHHHHHhhhccCCCHHHHHHHHhHHHHHHcCCCCCccccccCCCccEEEEcCC----------------
Q psy12256 339 NCNNGGSITPFNGCVQFFMRSTRCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILDEG---------------- 402 (417)
Q Consensus 339 ~~~~~g~~~~l~~~~~~~~~~~~~~~~~~l~~~t~~pA~~l~l~~~~G~l~~G~~ADlvv~d~~---------------- 402 (417)
..+++|....+...++.+++..++++.++++++|.|||++||++ .+|+|++|++|||+|+|++
T Consensus 330 ~~G~~g~e~~l~~~~~~~~~~~~l~~~~~~~~~t~npA~~lgl~-~~G~l~~G~~ADlvi~d~~~~~~~~~~~~~~~~~~ 408 (451)
T PRK06189 330 WGGISGGQSTLLVMLTEGYIERGIPLETIARLLATNPAKRFGLP-QKGRLEVGADADFVLVDLDETYTLTKEDLFYRHKQ 408 (451)
T ss_pred CCCceeHHHHHHHHHHHHHhcCCCCHHHHHHHHhhhHHHHhCCC-CCCcccCCCcCCEEEEcCCCCEEECHHHhhhcCCC
Confidence 34566766777777777766678999999999999999999995 4799999999999999974
Q ss_pred ---------CceeEEEECCEEec
Q psy12256 403 ---------LHVYSTWIAGDLKL 416 (417)
Q Consensus 403 ---------~~v~~v~~~G~~v~ 416 (417)
.+|..|+++|+++|
T Consensus 409 ~p~~g~~~~g~v~~tiv~G~~v~ 431 (451)
T PRK06189 409 SPYEGRTFPGRVVATYLRGQCVY 431 (451)
T ss_pred CCcCCcEEEeEEEEEEECCEEEE
Confidence 25899999999987
No 31
>cd01308 Isoaspartyl-dipeptidase Isoaspartyl dipeptidase hydrolyzes the beta-L-isoaspartyl linkages in dipeptides, as part of the degradative pathway to eliminate proteins with beta-L-isoaspartyl peptide bonds, bonds whereby the beta-group of an aspartate forms the peptide link with the amino group of the following amino acid. Formation of this bond is a spontaneous nonenzymatic reaction in nature and can profoundly effect the function of the protein. Isoaspartyl dipeptidase is an octameric enzyme that contains a binuclear zinc center in the active site of each subunit and shows a strong preference of hydrolyzing Asp-Leu dipeptides.
Probab=99.85 E-value=5.1e-19 Score=176.65 Aligned_cols=109 Identities=26% Similarity=0.247 Sum_probs=81.7
Q ss_pred hHHHHHHHhcC--CCCeEEeeCCe--eeeeeecccccceeeCCCCCCCCCCCchhHHHHHhhhccCCCHHHHHHHHhHHH
Q psy12256 300 PSALRIANSTH--PEGSITPFNGC--VQFFMRSTRCSLWFDLGNCNNGGSITPFNGCVQFFMRSTRCSLVHALEVASLHP 375 (417)
Q Consensus 300 ~~~l~~~~~~~--~~~~~~~~d~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~l~~~t~~p 375 (417)
...++.+.+.+ .+++++++|.. .++. ...+ .+ .+..+++..++...+..+++..++|++++++++|.||
T Consensus 263 ~~~l~~~~~~g~~~d~i~l~TD~~~~~p~~-~~~g----~~--~~~g~~~~~~~~~~~~~~v~~~~i~~~~al~~~T~np 335 (387)
T cd01308 263 SEALKRLLEQGVPLERITFSSDGNGSLPKF-DENG----NL--VGLGVGSVDTLLREVREAVKCGDIPLEVALRVITSNV 335 (387)
T ss_pred HHHHHHHHHhCCCCCcEEEEECCCCCcccC-ccCC----eE--EecCcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 34555555554 46788888842 1110 0000 00 1234566667778888888877799999999999999
Q ss_pred HHHcCCCCCccccccCCCccEEEEcCCCceeEEEECCEEec
Q psy12256 376 AKALGLEQHKGTLDFGADADFVILDEGLHVYSTWIAGDLKL 416 (417)
Q Consensus 376 A~~l~l~~~~G~l~~G~~ADlvv~d~~~~v~~v~~~G~~v~ 416 (417)
|+++++++ +|+|++|++|||+++|++.++..|+++|++++
T Consensus 336 A~~lg~~~-~G~i~~G~~ADlvv~d~~~~~~~~~~~G~~v~ 375 (387)
T cd01308 336 ARILKLRK-KGEIQPGFDADLVILDKDLDINSVIAKGQIMV 375 (387)
T ss_pred HHHhCCCC-CCCcCCCCcCCEEEEcCCCCEEEEEECCEEEE
Confidence 99999976 79999999999999999999999999999876
No 32
>cd01315 L-HYD_ALN L-Hydantoinases (L-HYDs) and Allantoinase (ALN); L-Hydantoinases are a member of the dihydropyrimidinase family, which catalyzes the reversible hydrolytic ring opening of dihydropyrimidines and hydantoins (five-membered cyclic diamides used in biotechnology). But L-HYDs differ by having an L-enantio specificity and by lacking activity on possible natural substrates such as dihydropyrimidines. Allantoinase catalyzes the hydrolytic cleavage of the five-member ring of allantoin (5-ureidohydantoin) to form allantoic acid.
Probab=99.85 E-value=1.8e-19 Score=183.29 Aligned_cols=79 Identities=25% Similarity=0.284 Sum_probs=69.8
Q ss_pred CCCCCCCCCCchhHHHHHhhhccCCCHHHHHHHHhHHHHHHcCCCCCccccccCCCccEEEEcCC---------------
Q psy12256 338 GNCNNGGSITPFNGCVQFFMRSTRCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILDEG--------------- 402 (417)
Q Consensus 338 ~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~l~~~t~~pA~~l~l~~~~G~l~~G~~ADlvv~d~~--------------- 402 (417)
..++++|....|...++.+++..+++++++++++|.|||+++|+++++|+|++|++|||+++|.+
T Consensus 329 ~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~pa~~~g~~~~~G~l~~g~~Ad~~v~d~~~~~~~~~~~~~~~~~ 408 (447)
T cd01315 329 AWGGISGLQLGLPVMLTEAVNKRGLSLEDIARLMCENPAKLFGLSHQKGRIAVGYDADFVVWDPEEEFTVDAEDLYYKNK 408 (447)
T ss_pred CCCCeeEHHHhHHHHHHHHHHcCCCCHHHHHHHHhHHHHHHhCCCCCCccccCCCCCCEEEEcCCCCEEEcHHHccccCC
Confidence 45677888888888888888778999999999999999999999866899999999999999965
Q ss_pred ----------CceeEEEECCEEec
Q psy12256 403 ----------LHVYSTWIAGDLKL 416 (417)
Q Consensus 403 ----------~~v~~v~~~G~~v~ 416 (417)
.+|..||++|+++|
T Consensus 409 ~~~~~g~~~~g~v~~ti~~G~~v~ 432 (447)
T cd01315 409 ISPYVGRTLKGRVHATILRGTVVY 432 (447)
T ss_pred CCCccCeEEeeeEEEEEECCEEEE
Confidence 25889999999987
No 33
>PRK09060 dihydroorotase; Validated
Probab=99.85 E-value=8.4e-20 Score=184.97 Aligned_cols=76 Identities=26% Similarity=0.315 Sum_probs=60.8
Q ss_pred CCCCCCCCCchhHHHHHhhhccCCCHHHHHHHHhHHHHHHcCCCCCccccccCCCccEEEEcCC----------------
Q psy12256 339 NCNNGGSITPFNGCVQFFMRSTRCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILDEG---------------- 402 (417)
Q Consensus 339 ~~~~~g~~~~l~~~~~~~~~~~~~~~~~~l~~~t~~pA~~l~l~~~~G~l~~G~~ADlvv~d~~---------------- 402 (417)
..++.|....+...+ ..+..+.++++++++++|.|||++||+++ +|+|++|++|||+|+|.+
T Consensus 322 ~~G~~g~e~~~~l~~-~~v~~g~l~~~~~~~~~s~~pa~~~gl~~-~G~l~~G~~ADlvl~d~~~~~~v~~~~~~s~~~~ 399 (444)
T PRK09060 322 PSGMTGVQTLVPIML-DHVNAGRLSLERFVDLTSAGPARIFGIAG-KGRIAVGYDADFTIVDLKRRETITNEWIASRCGW 399 (444)
T ss_pred CCCcccHHHHHHHHH-HHHHcCCCCHHHHHHHHhHhHHHHhCCCC-CCcccCCCcCCEEEEcCCCCEEEChHHhcccCCC
Confidence 344555444444444 44666679999999999999999999954 799999999999999964
Q ss_pred ---------CceeEEEECCEEec
Q psy12256 403 ---------LHVYSTWIAGDLKL 416 (417)
Q Consensus 403 ---------~~v~~v~~~G~~v~ 416 (417)
.++..|+++|+++|
T Consensus 400 sp~~g~~l~g~~~~tiv~G~~v~ 422 (444)
T PRK09060 400 TPYDGKEVTGWPVGTIVRGQRVM 422 (444)
T ss_pred CCCCCCEEeeeEEEEEECCEEEE
Confidence 36789999999987
No 34
>TIGR03178 allantoinase allantoinase. This enzyme carries out the first step in the degradation of allantoin, a ring-opening hydrolysis. The seed members of this model are all in the vicinity of other genes involved in the processes of xanthine/urate/allantoin catabolism. Although not included in the seed, many eukaryotic homologs of this family are included above the trusted cutoff. Below the noise cutoff are related hydantoinases.
Probab=99.85 E-value=1.6e-19 Score=183.33 Aligned_cols=77 Identities=25% Similarity=0.336 Sum_probs=65.8
Q ss_pred CCCCCCCCCchhHHHHHhhhccCCCHHHHHHHHhHHHHHHcCCCCCccccccCCCccEEEEcCC----------------
Q psy12256 339 NCNNGGSITPFNGCVQFFMRSTRCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILDEG---------------- 402 (417)
Q Consensus 339 ~~~~~g~~~~l~~~~~~~~~~~~~~~~~~l~~~t~~pA~~l~l~~~~G~l~~G~~ADlvv~d~~---------------- 402 (417)
..+++|....+...++.+++..+++++++++++|.|||+++|++ ++|+|++|+.|||+++|.+
T Consensus 327 ~~G~~g~e~~l~~~~~~~~~~~~l~~~~~~~~~t~~pA~~~g~~-~~G~l~~G~~Ad~vi~d~~~~~~~~~~~~~~~~~~ 405 (443)
T TIGR03178 327 WGGIAGLQSTLDVMFDEAVQKRGLPLEDIARLMATNPAKRFGLA-QKGRIAPGKDADFVFVDPDESYTLTPDDLYYRHKV 405 (443)
T ss_pred CCCeeEHHHhHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHcCCC-CCCccCCCCcCCEEEEcCCCcEEEcHHHhhhcCCC
Confidence 34566666777777777777778999999999999999999995 4799999999999999974
Q ss_pred ---------CceeEEEECCEEec
Q psy12256 403 ---------LHVYSTWIAGDLKL 416 (417)
Q Consensus 403 ---------~~v~~v~~~G~~v~ 416 (417)
.+|..||++|+++|
T Consensus 406 ~p~~g~~~~g~v~~t~v~G~~v~ 428 (443)
T TIGR03178 406 SPYVGRTIGGRVRATYLRGQCIY 428 (443)
T ss_pred CCcCCcEEeeEEEEEEECCEEEE
Confidence 24899999999987
No 35
>PRK10657 isoaspartyl dipeptidase; Provisional
Probab=99.85 E-value=3.7e-19 Score=177.77 Aligned_cols=72 Identities=28% Similarity=0.387 Sum_probs=65.6
Q ss_pred CCCCchhHHHHHhhhccCCCHHHHHHHHhHHHHHHcCCCCCccccccCCCccEEEEcCCCceeEEEECCEEec
Q psy12256 344 GSITPFNGCVQFFMRSTRCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILDEGLHVYSTWIAGDLKL 416 (417)
Q Consensus 344 g~~~~l~~~~~~~~~~~~~~~~~~l~~~t~~pA~~l~l~~~~G~l~~G~~ADlvv~d~~~~v~~v~~~G~~v~ 416 (417)
++...|...++.++++.++|++++++++|.|||+++++++ +|+|++|+.|||+++|.+.++..|+++|++++
T Consensus 305 ~~~~~l~~~~~~~~~~~gis~~~~l~~aT~npA~~lg~~~-~G~l~~G~~AD~vv~~~~~~~~~~~~~G~~v~ 376 (388)
T PRK10657 305 GSVESLLEEVRELVKDEGLPLEDALKPLTSNVARFLKLNG-KGEILPGKDADLLVLDDDLRIEQVIAKGKLMV 376 (388)
T ss_pred CchhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCC-CCccCCCCccCEEEECCCCCEEEEEECCEEEE
Confidence 4556788888888866799999999999999999999976 89999999999999998899999999999886
No 36
>PRK09059 dihydroorotase; Validated
Probab=99.84 E-value=1.4e-19 Score=182.22 Aligned_cols=77 Identities=27% Similarity=0.358 Sum_probs=63.5
Q ss_pred CCCCCCCCCCchhHHHHHhhhccCCCHHHHHHHHhHHHHHHcCCCCCccccccCCCccEEEEcCC---------------
Q psy12256 338 GNCNNGGSITPFNGCVQFFMRSTRCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILDEG--------------- 402 (417)
Q Consensus 338 ~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~l~~~t~~pA~~l~l~~~~G~l~~G~~ADlvv~d~~--------------- 402 (417)
...++.|..+.+...+ .++...++++.++++++|.|||++||++ +|+|++|++|||+++|++
T Consensus 327 ~~~G~~gle~~l~~~~-~~v~~~~l~l~~~~~~~s~nPA~~~gl~--~G~l~~G~~ADlvl~d~~~~~~v~~~~~~s~~~ 403 (429)
T PRK09059 327 AAAGAIGLETLLAAAL-RLYHNGEVPLLRLIEALSTRPAEIFGLP--AGTLKPGAPADIIVIDLDEPWVVDPEDLKSRSK 403 (429)
T ss_pred CCCCcccHHHHHHHHH-HHHHcCCCCHHHHHHHHhHHHHHHhCCC--cCcccCCCcCCEEEECCCCCEEECcccCccCCC
Confidence 3455666665555555 4666678999999999999999999994 599999999999999964
Q ss_pred ----------CceeEEEECCEEecC
Q psy12256 403 ----------LHVYSTWIAGDLKLT 417 (417)
Q Consensus 403 ----------~~v~~v~~~G~~v~~ 417 (417)
++|..|+++|+++|+
T Consensus 404 ~sPf~G~~l~G~v~~ti~~G~~v~~ 428 (429)
T PRK09059 404 NTPFEEARFQGRVVRTIVAGKTVYE 428 (429)
T ss_pred CCCCCCCEEeeEEEEEEECCEEEee
Confidence 579999999999874
No 37
>PRK09237 dihydroorotase; Provisional
Probab=99.84 E-value=1.5e-18 Score=172.89 Aligned_cols=68 Identities=24% Similarity=0.328 Sum_probs=59.3
Q ss_pred CchhHHHHHhhhccCCCHHHHHHHHhHHHHHHcCCCCCccccccCCCccEEEEcCC-------------------CceeE
Q psy12256 347 TPFNGCVQFFMRSTRCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILDEG-------------------LHVYS 407 (417)
Q Consensus 347 ~~l~~~~~~~~~~~~~~~~~~l~~~t~~pA~~l~l~~~~G~l~~G~~ADlvv~d~~-------------------~~v~~ 407 (417)
..+...++.+++ .|++++++++++|.|||++|+++ .+|+|++|+.|||+++|.+ .+|+.
T Consensus 282 ~~l~~~~~~~~~-~g~~~~~al~~aT~n~A~~lgl~-~~G~l~~G~~ADlvv~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 359 (380)
T PRK09237 282 YSLATVMSKFLA-LGMPLEEVIAAVTKNAADALRLP-ELGRLQVGSDADLTLFTLKDGPFTLTDSEGDSLIGERLLTPLA 359 (380)
T ss_pred hHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHcCCC-CCCcCCCCCcCCEEEEeCCCCCccccCCCCCEEEecCCCcceE
Confidence 457777777775 58999999999999999999995 4899999999999999842 47999
Q ss_pred EEECCEEec
Q psy12256 408 TWIAGDLKL 416 (417)
Q Consensus 408 v~~~G~~v~ 416 (417)
||++||++|
T Consensus 360 ~~v~G~~~~ 368 (380)
T PRK09237 360 TVRGGKVVL 368 (380)
T ss_pred EEECCEEEE
Confidence 999999986
No 38
>PRK07369 dihydroorotase; Provisional
Probab=99.84 E-value=8e-20 Score=183.32 Aligned_cols=63 Identities=21% Similarity=0.225 Sum_probs=57.4
Q ss_pred CCCCCCCCCCchhHHHHHhhhccCCCHHHHHHHHhHHHHHHcCCCCCccccccCCCccEEEEcCC
Q psy12256 338 GNCNNGGSITPFNGCVQFFMRSTRCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILDEG 402 (417)
Q Consensus 338 ~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~l~~~t~~pA~~l~l~~~~G~l~~G~~ADlvv~d~~ 402 (417)
...++.|+.+.|...++.++++.+++++++++++|.|||++||++ .|.|++|++|||+++|++
T Consensus 323 ~~~G~~G~e~~l~~~~~~~v~~~~i~l~~~v~~~s~nPA~~lgl~--~G~i~~G~~ADlvi~d~~ 385 (418)
T PRK07369 323 APPGAIGLELALPLLWQNLVETGELSALQLWQALSTNPARCLGQE--PPSLAPGQPAELILFDPQ 385 (418)
T ss_pred CCCCceeHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhHHHHhCCC--cCcccCCCcCCEEEEcCC
Confidence 456778888899999999998889999999999999999999995 499999999999999976
No 39
>PRK09357 pyrC dihydroorotase; Validated
Probab=99.84 E-value=5.1e-20 Score=185.99 Aligned_cols=76 Identities=28% Similarity=0.346 Sum_probs=62.6
Q ss_pred CCCCCCCCchhHHHHHhhhccCCCHHHHHHHHhHHHHHHcCCCCCccccccCCCccEEEEcCC-----------------
Q psy12256 340 CNNGGSITPFNGCVQFFMRSTRCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILDEG----------------- 402 (417)
Q Consensus 340 ~~~~g~~~~l~~~~~~~~~~~~~~~~~~l~~~t~~pA~~l~l~~~~G~l~~G~~ADlvv~d~~----------------- 402 (417)
.++.|....+...+..++...+++++++++++|.|||+++|+++ |+|++|++|||+++|.+
T Consensus 322 ~G~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~t~~~A~~~g~~~--G~i~~G~~AD~~i~d~~~~~~v~~~~~~~~~~~~ 399 (423)
T PRK09357 322 FGITGLETALSLLYTTLVKTGLLDLEQLLEKMTINPARILGLPA--GPLAEGEPADLVIFDPEAEWTVDGEDFASKGKNT 399 (423)
T ss_pred CCceEHHHHHHHHHHHHHHcCCCCHHHHHHHHhHHHHHHhCCCC--CccCCCCcCCEEEEcCCCCEEEchhhcccCCCCC
Confidence 34555555566666666666689999999999999999999964 99999999999999954
Q ss_pred --------CceeEEEECCEEecC
Q psy12256 403 --------LHVYSTWIAGDLKLT 417 (417)
Q Consensus 403 --------~~v~~v~~~G~~v~~ 417 (417)
.+|..||++|++||.
T Consensus 400 p~~g~~~~g~v~~t~v~G~~v~~ 422 (423)
T PRK09357 400 PFIGMKLKGKVVYTIVDGKIVYQ 422 (423)
T ss_pred CCcCCEEeeEEEEEEECCEEEec
Confidence 368999999999974
No 40
>PRK01211 dihydroorotase; Provisional
Probab=99.83 E-value=8.2e-19 Score=175.01 Aligned_cols=76 Identities=21% Similarity=0.277 Sum_probs=63.8
Q ss_pred CCCCCCCCCCchhHHHHHhhhccCCCHHHHHHHHhHHHHHHcCCCCCccccccCCCccEEEEcCC---------------
Q psy12256 338 GNCNNGGSITPFNGCVQFFMRSTRCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILDEG--------------- 402 (417)
Q Consensus 338 ~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~l~~~t~~pA~~l~l~~~~G~l~~G~~ADlvv~d~~--------------- 402 (417)
...++.|..+.+...+ .+++.+++|++++++++|.|||++||++ +|+|++|++|||+|||++
T Consensus 290 a~~G~~gle~~lpl~~-~~v~~~~isl~~~v~~~s~nPAki~gl~--kG~l~~G~~ADlvi~D~~~~~~v~~~~~~s~~~ 366 (409)
T PRK01211 290 AKSGIIGVETRVPLFL-ALVKKKILPLDVLYKTAIERPASLFGIK--KGKIEEGYDADFMAFDFTNIKKINDKRLHSKCP 366 (409)
T ss_pred CCCCCCcHHHHHHHHH-HHHHcCCCCHHHHHHHHHHHHHHHhCCC--CCcccCCCcCCEEEEcCCCeEEEChHHhhccCC
Confidence 4556777777676666 4677778999999999999999999993 699999999999999974
Q ss_pred ---------CceeEEEECCEEec
Q psy12256 403 ---------LHVYSTWIAGDLKL 416 (417)
Q Consensus 403 ---------~~v~~v~~~G~~v~ 416 (417)
.+|..|+++|+++|
T Consensus 367 ~spf~G~~~~~v~~tiv~G~~v~ 389 (409)
T PRK01211 367 VSPFNGFDAIFPSHVIMRGEVVI 389 (409)
T ss_pred CCCCCCCEeccEEEEEECCEEEE
Confidence 14788999999986
No 41
>COG1228 HutI Imidazolonepropionase and related amidohydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.83 E-value=1.4e-19 Score=179.54 Aligned_cols=71 Identities=28% Similarity=0.348 Sum_probs=63.2
Q ss_pred CCchhHHHHHhhhccCCCHHHHHHHHhHHHHHHcCCCCCccccccCCCccEEEEcCC-----------CceeEEEECCEE
Q psy12256 346 ITPFNGCVQFFMRSTRCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILDEG-----------LHVYSTWIAGDL 414 (417)
Q Consensus 346 ~~~l~~~~~~~~~~~~~~~~~~l~~~t~~pA~~l~l~~~~G~l~~G~~ADlvv~d~~-----------~~v~~v~~~G~~ 414 (417)
...+...+..+++. |||++|+|+++|.|||++||+.++.|+|++||+|||+|||.+ .++..||++|++
T Consensus 321 ~~~l~~~m~l~~~~-gmtp~EaL~a~T~naA~alG~~~~~Gsle~Gk~ADlvv~~~dp~~~i~y~~~~~~v~~v~k~G~~ 399 (406)
T COG1228 321 HGSLALEMALAVRL-GMTPEEALKAATINAAKALGLADKVGSLEPGKDADLVVWDGDPLADIPYFLGLNKVEAVIKDGKV 399 (406)
T ss_pred hhHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHcCCccccccccCCCccCEEEEcCCChhhccccccCCceEEEEECCEE
Confidence 34567777778876 599999999999999999999999999999999999999976 479999999999
Q ss_pred ecC
Q psy12256 415 KLT 417 (417)
Q Consensus 415 v~~ 417 (417)
++.
T Consensus 400 ~~~ 402 (406)
T COG1228 400 VYE 402 (406)
T ss_pred eec
Confidence 873
No 42
>PRK06687 chlorohydrolase; Validated
Probab=99.83 E-value=3.4e-19 Score=179.75 Aligned_cols=56 Identities=34% Similarity=0.598 Sum_probs=51.3
Q ss_pred CCCHHHHHHHHhHHHHHHcCCCCCccccccCCCccEEEEcCC---------------------CceeEEEECCEEec
Q psy12256 361 RCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILDEG---------------------LHVYSTWIAGDLKL 416 (417)
Q Consensus 361 ~~~~~~~l~~~t~~pA~~l~l~~~~G~l~~G~~ADlvv~d~~---------------------~~v~~v~~~G~~v~ 416 (417)
.+++.++++|+|.|||+++|++++.|+|++|+.|||+++|.+ .+|..||++|++++
T Consensus 333 ~~~~~~~l~~aT~~gA~~lg~~~~~G~l~~G~~ADlv~~d~~~~~~~~p~~~~~~~lv~~~~~~~v~~v~v~G~~v~ 409 (419)
T PRK06687 333 QFPIETALKVLTIEGAKALGMENQIGSLEVGKQADFLVIQPQGKIHLQPQENMLSHLVYAVKSSDVDDVYIAGEQVV 409 (419)
T ss_pred cCCHHHHHHHHhHHHHHHcCCCCCCcccCCCccCCEEEECCCCCCCcCCccCHHHHhheeCCCCCccEEEECCEEEE
Confidence 389999999999999999999877899999999999999953 36999999999986
No 43
>cd01307 Met_dep_hydrolase_B Metallo-dependent hydrolases, subgroup B is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=99.82 E-value=5.3e-18 Score=166.22 Aligned_cols=290 Identities=18% Similarity=0.175 Sum_probs=154.6
Q ss_pred CeEEeCCCCEeeccchhhcccCCCCCCCCCCCCCcHHHHHHHHHHHHhCCceeeeeccCCCCHHHHHHHHHHHHcCCCCC
Q psy12256 3 DFRFDCGGKLIAPGFIDIQINGGFGVDFSHDIDSVDKNVSIVARGILAHGVTSFCPTLVTSEPQVYKKVLSRLRKTPGGK 82 (417)
Q Consensus 3 ~~vID~~G~~v~PG~ID~H~H~~~g~~~~~~~~~~~~~~~~~~~~~~~~GvTt~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (417)
+++||++|++|+|||||+|+|...... .. .+...+..+.+||||++++..+.+ ......++.+.+..
T Consensus 22 ~~~id~~g~~v~PG~iD~H~H~~~~g~-~~--------~~~~~~~a~~~GvTtvvd~~~~~~-~~~~~~~~~~~~~~--- 88 (338)
T cd01307 22 TQIVDAGGCYVSPGWIDLHVHVYQGGT-RY--------GDRPDMIGVKSGVTTVVDAGSAGA-DNIDGFRYTVIERS--- 88 (338)
T ss_pred CeEEECCCCEEecCeEEeeecCCCCCc-cc--------CCCHhHHHHcCceeEEEeCCCCCC-CCHHHHHHHHHHhh---
Confidence 589999999999999999999864211 11 123567789999999998865443 22222233332221
Q ss_pred CCceeEE---eeeeCCCCCCCCCCCCCCcccCCCc-HHHHHHHHHhC-CCCCEEEEEe-----cCCCCChHHHHHHHHHC
Q psy12256 83 HGATVLG---AHVEGPFISPDKKGAHSLSKIVTFD-KGFDSVREVYG-NLSNIAIITL-----APELAGSMEVIDKLVEQ 152 (417)
Q Consensus 83 ~~~~~~G---~~leGp~~~~~~~G~~~~~~~~~~~-~~~~~~~~~~g-~~~~ik~~~~-----~pe~~~~~~~i~~~~~~ 152 (417)
..++.. +...|.+. +. ..+ + +...+ +.+.++.+... +...+|.... .+......+.++.+.+.
T Consensus 89 -~~~v~a~~~~~~~g~~~-~~---~~~-~-~~~~~~~~l~~~~~e~~~gi~gik~~~~~~~~~~~~~~~l~~~~~~a~~~ 161 (338)
T cd01307 89 -ATRVYAFLNISRVGLVA-QD---ELP-D-PDNIDEDAVVAAAREYPDVIVGLKARASKSVVGEWGIKPLELAKKIAKEA 161 (338)
T ss_pred -hceEEEEEeeecccccc-cc---ccC-C-hhHCCHHHHHHHHHHCcCcEEEEEEEeecccccccCCcHHHHHHHHHHHc
Confidence 111121 11223221 11 011 1 21222 33333333321 1112344321 11222245777788888
Q ss_pred CCeeeecCCc---CCHHHHHHHHHCCCCeEeeCCCCcccccccCCceEEeecCCCCCCCceEEEEecCCCcCCHHHHHHH
Q psy12256 153 GITVSLGHSS---ADINIAEEAVRHGASLITHLFNAMLPFHHRDPGIIGLLSSDNIDSSKVYYGIIADGVHTHPSALRIA 229 (417)
Q Consensus 153 gi~v~~GH~~---~~~~~~~~a~~~G~~~i~Hl~~~~~~~~~r~~g~~~~~~~~~l~~~~~~~~~i~dg~h~~~~~~~~~ 229 (417)
|..+.+ |+. ...+++...++.| ..++|++++......+++|.+...+.+.+. ..++. |
T Consensus 162 ~~pi~v-H~~~~~~~~~~~~~~l~~g-~~~~H~~~g~~~~~~~~~~~~~~~~~~~~~-~G~~~----d------------ 222 (338)
T cd01307 162 DLPLMV-HIGSPPPILDEVVPLLRRG-DVLTHCFNGKPNGIVDEEGEVLPLVRRARE-RGVIF----D------------ 222 (338)
T ss_pred CCCEEE-EeCCCCCCHHHHHHHhcCC-CEEEeccCCCCCCCCCCCCcHHHHHHHHHh-CCEEE----E------------
Confidence 987776 544 4566777777777 689999998765555555443321111000 11111 1
Q ss_pred HhhCCCCCC--CCCHHHHHHHHHccceeeeccccccCCCCCCCCccccccccccccCCcceeeeeCCceeeChHHHHHHH
Q psy12256 230 NSTHPEGHS--SADIHIAEEAVRHGASLITHLFNAMLPFHHRDPGIIGLLSSDNIDSSKVYYGIIADGVHTHPSALRIAN 307 (417)
Q Consensus 230 ~~~~~~~h~--~~~~e~~~~a~~~g~~~~td~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~i~dg~~~~~~~l~~~~ 307 (417)
.+|. ..++..+.+++++|+...
T Consensus 223 -----~~~G~~~~~~~~~~~l~~~G~~~~--------------------------------------------------- 246 (338)
T cd01307 223 -----VGHGTASFSFRVARAAIAAGLLPD--------------------------------------------------- 246 (338)
T ss_pred -----eCCCCCchhHHHHHHHHHCCCCCe---------------------------------------------------
Confidence 1110 111122222222222110
Q ss_pred hcCCCCeEEeeCCeeeeeeecccccceeeCCCCCCCCCCCchhHHHHHhhhccCCCHHHHHHHHhHHHHHHcCCCCCccc
Q psy12256 308 STHPEGSITPFNGCVQFFMRSTRCSLWFDLGNCNNGGSITPFNGCVQFFMRSTRCSLVHALEVASLHPAKALGLEQHKGT 387 (417)
Q Consensus 308 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~l~~~t~~pA~~l~l~~~~G~ 387 (417)
.+.+|... .+...+....+...++.+.. .|++++++++++|.|||++|++. .+|+
T Consensus 247 -------~lstD~~~----------------~~~~~~p~~~l~~~l~~l~~-~gi~~ee~~~~~T~NpA~~lgl~-~~G~ 301 (338)
T cd01307 247 -------TISSDIHG----------------RNRTNGPVYALATTLSKLLA-LGMPLEEVIEAVTANPARMLGLA-EIGT 301 (338)
T ss_pred -------eecCCccc----------------cCCCCCccccHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCCC-CCCc
Confidence 11111111 01112333445666776644 59999999999999999999995 4899
Q ss_pred cccCCCccEEEEcCC-CceeEEEECC
Q psy12256 388 LDFGADADFVILDEG-LHVYSTWIAG 412 (417)
Q Consensus 388 l~~G~~ADlvv~d~~-~~v~~v~~~G 412 (417)
|++|+.|||++++.+ .++..+-..|
T Consensus 302 l~~G~~ad~~v~~~~~~~~~~~d~~~ 327 (338)
T cd01307 302 LAVGYDADLTVFDLKDGRVELVDSEG 327 (338)
T ss_pred cCCCCcCCEEEEeCCCCCeEEEeCCC
Confidence 999999999999965 3444333333
No 44
>PRK09228 guanine deaminase; Provisional
Probab=99.82 E-value=8.3e-19 Score=177.25 Aligned_cols=74 Identities=32% Similarity=0.422 Sum_probs=59.3
Q ss_pred CCCCchhHHHHHhhh-----ccCCCHHHHHHHHhHHHHHHcCCCCCccccccCCCccEEEEcCC----------------
Q psy12256 344 GSITPFNGCVQFFMR-----STRCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILDEG---------------- 402 (417)
Q Consensus 344 g~~~~l~~~~~~~~~-----~~~~~~~~~l~~~t~~pA~~l~l~~~~G~l~~G~~ADlvv~d~~---------------- 402 (417)
+...++...++.... ..++++.++++|+|.|||+++|++++.|+|++|++|||+++|.+
T Consensus 325 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~aT~~~A~~lg~~~~~G~l~~Gk~ADlvv~d~~~~~~~~~~~~~~~~~~ 404 (433)
T PRK09228 325 GTSFSMLQTMNEAYKVQQLQGYRLSPFQAFYLATLGGARALGLDDRIGNLAPGKEADFVVLDPAATPLLALRTARAESLE 404 (433)
T ss_pred CCCCCHHHHHHHHHHHhhcccCCCCHHHHHHHHhHHHHHHhCCCCCCcccCCCCCCCEEEEcCCCCccccchhcccCCHH
Confidence 344556665554432 24689999999999999999999876899999999999999842
Q ss_pred ------------CceeEEEECCEEecC
Q psy12256 403 ------------LHVYSTWIAGDLKLT 417 (417)
Q Consensus 403 ------------~~v~~v~~~G~~v~~ 417 (417)
..|..|||+|++++.
T Consensus 405 d~~~~lv~~~~~~~V~~v~VdG~~v~~ 431 (433)
T PRK09228 405 ELLFALMTLGDDRAVAETYVAGRPVYR 431 (433)
T ss_pred HHHHHHhhcCCccceeEEEECCEEecc
Confidence 368899999999873
No 45
>PRK07228 N-ethylammeline chlorohydrolase; Provisional
Probab=99.82 E-value=7.4e-19 Score=178.69 Aligned_cols=56 Identities=34% Similarity=0.468 Sum_probs=51.5
Q ss_pred CCCHHHHHHHHhHHHHHHcCCCCCccccccCCCccEEEEcCC----------------------CceeEEEECCEEec
Q psy12256 361 RCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILDEG----------------------LHVYSTWIAGDLKL 416 (417)
Q Consensus 361 ~~~~~~~l~~~t~~pA~~l~l~~~~G~l~~G~~ADlvv~d~~----------------------~~v~~v~~~G~~v~ 416 (417)
.+++.++++++|.|||+++|+++.+|+|++|+.|||+++|.+ .+|..||++|+++|
T Consensus 336 ~~s~~~al~~~T~~~A~~lg~~~~~G~l~~G~~ADlvvld~~~~~~~p~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~ 413 (445)
T PRK07228 336 AMPARTVFEMATLGGAKAAGFEDEIGSLEEGKKADLAILDLDGLHATPSHGVDVLSHLVYAAHGSDVETTMVDGKIVM 413 (445)
T ss_pred ccCHHHHHHHHHHHHHHHhCCCCCccccCCCCccCEEEEcCCCcccCCCcccCHHHHhheeCCCCCeeEEEECCEEEE
Confidence 589999999999999999999877899999999999999964 25899999999987
No 46
>PRK02382 dihydroorotase; Provisional
Probab=99.82 E-value=3.5e-19 Score=180.62 Aligned_cols=77 Identities=26% Similarity=0.346 Sum_probs=63.0
Q ss_pred CCCCCCCCCchhHHHHHhhhccCCCHHHHHHHHhHHHHHHcCCCCCccccccCCCccEEEEcCC----------------
Q psy12256 339 NCNNGGSITPFNGCVQFFMRSTRCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILDEG---------------- 402 (417)
Q Consensus 339 ~~~~~g~~~~l~~~~~~~~~~~~~~~~~~l~~~t~~pA~~l~l~~~~G~l~~G~~ADlvv~d~~---------------- 402 (417)
..+++|..+.+...+ .+++..+++++++++++|.|||++||++ .+|+|++|+.|||+++|.+
T Consensus 319 ~~G~~g~e~~~~~~~-~~~~~~~~~l~~~~~~~t~~pA~~~g~~-~~G~l~~G~~AD~vi~d~~~~~~~~~~~~~s~~~~ 396 (443)
T PRK02382 319 PSGVPGVETMLPLLL-AAVRKNRLPLERVRDVTAANPARIFGLD-GKGRIAEGYDADLVLVDPDAAREIRGDDLHSKAGW 396 (443)
T ss_pred CCCcccHHHHHHHHH-HHHHcCCCCHHHHHHHHhHHHHHHcCCC-CCCccCCCCcCCEEEEcCCCcEEEcHHHhcccCCC
Confidence 445666655565555 4666778999999999999999999996 4799999999999999963
Q ss_pred --------CceeEEEECCEEecC
Q psy12256 403 --------LHVYSTWIAGDLKLT 417 (417)
Q Consensus 403 --------~~v~~v~~~G~~v~~ 417 (417)
.++..|+++|+++|.
T Consensus 397 sp~~g~~~~~v~~tiv~G~~v~~ 419 (443)
T PRK02382 397 TPFEGMEGVFPELTMVRGTVVWD 419 (443)
T ss_pred CCcCCCEeceEEEEEECCEEEEE
Confidence 246899999999873
No 47
>cd01317 DHOase_IIa Dihydroorotase (DHOase), subgroup IIa; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis. This subgroup also contains proteins that lack the active site, like unc-33, a C.elegans protein involved in axon growth.
Probab=99.82 E-value=7.1e-19 Score=174.68 Aligned_cols=63 Identities=29% Similarity=0.355 Sum_probs=55.4
Q ss_pred CCCCCCCCCCchhHHHHHhhhccCCCHHHHHHHHhHHHHHHcCCCCCccccccCCCccEEEEcCC
Q psy12256 338 GNCNNGGSITPFNGCVQFFMRSTRCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILDEG 402 (417)
Q Consensus 338 ~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~l~~~t~~pA~~l~l~~~~G~l~~G~~ADlvv~d~~ 402 (417)
...+++|....+...++.+++...++++++++|+|.|||+++|+. .|.|++|++|||+++|.+
T Consensus 281 ~~~Gi~g~e~~l~~~~~~~~~~~~~~~~~~~~~~t~npA~~lgl~--~G~l~~G~~ADlvi~d~~ 343 (374)
T cd01317 281 APPGIIGLETALPLLWTLLVKGGLLTLPDLIRALSTNPAKILGLP--PGRLEVGAPADLVLFDPD 343 (374)
T ss_pred CCCcHhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhCCC--CCcccCCCcCCEEEECCC
Confidence 345577777888888888888777899999999999999999996 499999999999999976
No 48
>PRK08203 hydroxydechloroatrazine ethylaminohydrolase; Reviewed
Probab=99.82 E-value=7.9e-19 Score=178.69 Aligned_cols=55 Identities=27% Similarity=0.329 Sum_probs=50.1
Q ss_pred CCCHHHHHHHHhHHHHHHcCCCCCccccccCCCccEEEEcCC-------------------CceeEEEECCEEec
Q psy12256 361 RCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILDEG-------------------LHVYSTWIAGDLKL 416 (417)
Q Consensus 361 ~~~~~~~l~~~t~~pA~~l~l~~~~G~l~~G~~ADlvv~d~~-------------------~~v~~v~~~G~~v~ 416 (417)
.+++.++++++|.|||+++|++ .+|+|++|+.|||+++|.+ .+|..||++|+++|
T Consensus 350 ~i~~~~~l~~~T~~~A~~lg~~-~~G~l~~G~~ADlvv~d~~~~~~~~~~~p~~~l~~~~~~~v~~v~v~G~~v~ 423 (451)
T PRK08203 350 AMTAREALEWATLGGARVLGRD-DIGSLAPGKLADLALFDLDELRFAGAHDPVAALVLCGPPRADRVMVGGRWVV 423 (451)
T ss_pred CCCHHHHHHHHHHHHHHHhCCC-CCCCcCCCCccCEEEEcCCccccCCccChHHHHHccCCCCccEEEECCEEEE
Confidence 4899999999999999999997 5899999999999999953 26889999999987
No 49
>PRK00369 pyrC dihydroorotase; Provisional
Probab=99.82 E-value=1.2e-18 Score=172.98 Aligned_cols=76 Identities=22% Similarity=0.257 Sum_probs=64.0
Q ss_pred CCCCCCCCCCchhHHHHHhhhccCCCHHHHHHHHhHHHHHHcCCCCCccccccCCCccEEEEcCC---------------
Q psy12256 338 GNCNNGGSITPFNGCVQFFMRSTRCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILDEG--------------- 402 (417)
Q Consensus 338 ~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~l~~~t~~pA~~l~l~~~~G~l~~G~~ADlvv~d~~--------------- 402 (417)
...++.|..+.+...+. ++..++++++++++++|.|||++||++ .|.|++|++|||+++|++
T Consensus 275 ~~~Gi~GlE~~lpll~~-~v~~~~lsl~~~v~~~s~nPA~ilgl~--~g~i~~G~~ADlvi~d~~~~~~~~~~sk~~~sp 351 (392)
T PRK00369 275 CPPGIAALSFTPPFIYT-LVSKGILSIDRAVELISTNPARILGIP--YGEIKEGYRANFTVIQFEDWRYSTKYSKVIETP 351 (392)
T ss_pred CCCCCeeHHHHHHHHHH-HHHcCCCCHHHHHHHHHHHHHHHhCCC--CCccCCCCccCEEEEeCCceeEccccccCCCCC
Confidence 45567777777776665 555678999999999999999999995 378999999999999964
Q ss_pred -------CceeEEEECCEEec
Q psy12256 403 -------LHVYSTWIAGDLKL 416 (417)
Q Consensus 403 -------~~v~~v~~~G~~v~ 416 (417)
++|..||++|+++|
T Consensus 352 ~~G~~l~G~v~~ti~~G~~v~ 372 (392)
T PRK00369 352 LDGFELKASVYATIVQGKLAY 372 (392)
T ss_pred CCCCEeeeEEEEEEECCEEEE
Confidence 37999999999987
No 50
>PRK09045 N-ethylammeline chlorohydrolase; Provisional
Probab=99.81 E-value=9.1e-19 Score=177.79 Aligned_cols=56 Identities=38% Similarity=0.568 Sum_probs=51.9
Q ss_pred CCCHHHHHHHHhHHHHHHcCCCCCccccccCCCccEEEEcCC--------------------CceeEEEECCEEec
Q psy12256 361 RCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILDEG--------------------LHVYSTWIAGDLKL 416 (417)
Q Consensus 361 ~~~~~~~l~~~t~~pA~~l~l~~~~G~l~~G~~ADlvv~d~~--------------------~~v~~v~~~G~~v~ 416 (417)
+++++++++++|.|||+.+|+++++|+|++|+.||||++|.+ .+|..||++|+++|
T Consensus 339 ~~~~~~al~~~T~~~A~~lg~~~~~G~i~~G~~ADlvv~d~~~~~~~p~~~~~~~lv~~~~~~~v~~v~v~G~~v~ 414 (443)
T PRK09045 339 ALPAHTALRMATLNGARALGLDDEIGSLEPGKQADLVAVDLSGLETQPVYDPVSQLVYAAGREQVSHVWVAGKQLL 414 (443)
T ss_pred cCCHHHHHHHHhHHHHHHcCCCCCCcccCCCCcCCEEEEeCCCCCcCCccChHhHhhEeCCCCCccEEEECCEEEE
Confidence 589999999999999999999877899999999999999964 26999999999987
No 51
>PLN02795 allantoinase
Probab=99.81 E-value=3.8e-18 Score=175.12 Aligned_cols=76 Identities=25% Similarity=0.215 Sum_probs=62.9
Q ss_pred CCCCCCCCCchhHHHHHhhhccCCCHHHHHHHHhHHHHHHcCCCCCccccccCCCccEEEEcCC----------------
Q psy12256 339 NCNNGGSITPFNGCVQFFMRSTRCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILDEG---------------- 402 (417)
Q Consensus 339 ~~~~~g~~~~l~~~~~~~~~~~~~~~~~~l~~~t~~pA~~l~l~~~~G~l~~G~~ADlvv~d~~---------------- 402 (417)
..++.|-.+.+...++.+++ .+++++++++++|.|||++||++ .+|.|++|++|||+|+|++
T Consensus 386 ~~G~~gle~~l~~~~~~~~~-~~l~l~~~v~~~s~~pA~~~gl~-~~G~l~~G~~ADlvi~d~~~~~~v~~~~~~~s~~~ 463 (505)
T PLN02795 386 WGGISSLQFVLPATWTAGRA-YGLTLEQLARWWSERPAKLAGLD-SKGAIAPGKDADIVVWDPEAEFVLDESYPIYHKHK 463 (505)
T ss_pred CCCceeHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHhCCC-CCCccCCCCccCEEEEcCCcceEECcchhhhhcCC
Confidence 34556666667766766664 58999999999999999999995 4799999999999999853
Q ss_pred -----------CceeEEEECCEEec
Q psy12256 403 -----------LHVYSTWIAGDLKL 416 (417)
Q Consensus 403 -----------~~v~~v~~~G~~v~ 416 (417)
.+|..|+++|+++|
T Consensus 464 ~~sp~~G~~l~g~v~~tiv~G~~v~ 488 (505)
T PLN02795 464 SLSPYLGTKLSGKVIATFVRGNLVF 488 (505)
T ss_pred CcCCCCCeEEEeEEEEEEECCEEEE
Confidence 36789999999987
No 52
>PRK15493 5-methylthioadenosine/S-adenosylhomocysteine deaminase; Provisional
Probab=99.80 E-value=1.9e-18 Score=174.77 Aligned_cols=55 Identities=27% Similarity=0.458 Sum_probs=49.9
Q ss_pred CCCHHHHHHHHhHHHHHHcCCCCCccccccCCCccEEEEcCC---------------------CceeEEEECCEEec
Q psy12256 361 RCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILDEG---------------------LHVYSTWIAGDLKL 416 (417)
Q Consensus 361 ~~~~~~~l~~~t~~pA~~l~l~~~~G~l~~G~~ADlvv~d~~---------------------~~v~~v~~~G~~v~ 416 (417)
.+++.++++++|.|||+++|+++ .|+|++|+.|||+++|.+ ..|..||++|++++
T Consensus 334 ~~~~~~~l~~aT~~gA~~lg~~~-~G~l~~G~~ADlvv~d~~~~~~~~p~~d~~~~lv~~~~~~~V~~v~V~G~~v~ 409 (435)
T PRK15493 334 ALPVETALTLATKGAAEVIGMKQ-TGSLEVGKCADFITIDPSNKPHLQPADEVLSHLVYAASGKDISDVIINGKRVV 409 (435)
T ss_pred cCCHHHHHHHHhHHHHHHcCCCC-CCccCCCCcCCEEEEcCCCCCCcCCccChHHhEEEeCCCCCccEEEECCEEEE
Confidence 68999999999999999999975 899999999999999952 36899999999886
No 53
>cd01295 AdeC Adenine deaminase (AdeC) directly deaminates adenine to form hypoxanthine. This reaction is part of one of the adenine salvage pathways, as well as the degradation pathway. It is important for adenine utilization as a purine, as well as a nitrogen source in bacteria and archea.
Probab=99.80 E-value=1.2e-17 Score=168.39 Aligned_cols=67 Identities=24% Similarity=0.378 Sum_probs=57.5
Q ss_pred hhHHHHHhhhccCCCHHHHHHHHhHHHHHHcCCCCCccccccCCCccEEEEcC--CCceeEEEECCEEecC
Q psy12256 349 FNGCVQFFMRSTRCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILDE--GLHVYSTWIAGDLKLT 417 (417)
Q Consensus 349 l~~~~~~~~~~~~~~~~~~l~~~t~~pA~~l~l~~~~G~l~~G~~ADlvv~d~--~~~v~~v~~~G~~v~~ 417 (417)
+...++...+ .+++++++++++|.|||+++++ +.+|+|+||+.|||+++|. +.++..||++|+.||+
T Consensus 223 ~~~v~r~a~~-~g~s~~eal~~aT~n~A~~~gl-~~~G~i~~G~~AD~vv~~~~~~~~v~~v~~~G~~v~~ 291 (422)
T cd01295 223 LDYIVRRAIE-AGIPPEDAIQMATINPAECYGL-HDLGAIAPGRIADIVILDDLENFNITTVLAKGIAVVE 291 (422)
T ss_pred HHHHHHHHHH-cCCCHHHHHHHHhHHHHHHcCC-CCCcccCCCCcCCEEEECCCCCCceEEEEECCeEEEE
Confidence 4455555554 4899999999999999999999 4589999999999999994 6889999999998873
No 54
>cd01297 D-aminoacylase D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics.
Probab=99.80 E-value=1.8e-18 Score=174.09 Aligned_cols=67 Identities=24% Similarity=0.384 Sum_probs=56.1
Q ss_pred hhHHHHHhhhcc-CCCHHHHHHHHhHHHHHHcCCCCCccccccCCCccEEEEcCC---------------CceeEEEECC
Q psy12256 349 FNGCVQFFMRST-RCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILDEG---------------LHVYSTWIAG 412 (417)
Q Consensus 349 l~~~~~~~~~~~-~~~~~~~l~~~t~~pA~~l~l~~~~G~l~~G~~ADlvv~d~~---------------~~v~~v~~~G 412 (417)
+...+..+++.. .++++++++++|.|||++||+++ +|+|++|++|||+|||++ ..|..||++|
T Consensus 321 ~~~~l~~~~~~~~~~~~~~~~~~~t~~pA~~~gl~~-~G~l~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~v~~viv~G 399 (415)
T cd01297 321 FTRVLGHYVRERKLLSLEEAVRKMTGLPARVFGLAD-RGRIAPGYRADIVVFDPDTLADRATFTRPNQPAEGIEAVLVNG 399 (415)
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhCCCC-CceeCCCCCCCEEEEcccccccccchhhhccCCCCceEEEECC
Confidence 445555555433 49999999999999999999974 799999999999999975 2489999999
Q ss_pred EEec
Q psy12256 413 DLKL 416 (417)
Q Consensus 413 ~~v~ 416 (417)
+++|
T Consensus 400 ~~v~ 403 (415)
T cd01297 400 VPVV 403 (415)
T ss_pred EEEE
Confidence 9986
No 55
>PRK09356 imidazolonepropionase; Validated
Probab=99.80 E-value=3.2e-18 Score=172.00 Aligned_cols=69 Identities=25% Similarity=0.331 Sum_probs=58.5
Q ss_pred hhHHHHHhhhccCCCHHHHHHHHhHHHHHHcCCCCCccccccCCCccEEEEcCC-----------CceeEEEECCEEecC
Q psy12256 349 FNGCVQFFMRSTRCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILDEG-----------LHVYSTWIAGDLKLT 417 (417)
Q Consensus 349 l~~~~~~~~~~~~~~~~~~l~~~t~~pA~~l~l~~~~G~l~~G~~ADlvv~d~~-----------~~v~~v~~~G~~v~~ 417 (417)
+...++..+...++++.++++++|.|||+.+|+++++|+|++|+.|||+++|.+ .+|..||++|+++|+
T Consensus 327 ~~~~~~~~~~~~~l~~~~~l~~~T~~~A~~~g~~~~~G~i~~G~~AD~vvld~~~~~~~~~~~~~~~v~~v~v~G~~vy~ 406 (406)
T PRK09356 327 LLLAMNMACTLFRLTPEEALAAVTINAARALGRQDTHGSLEVGKKADLVIWDAPSPAELPYHFGVNPVETVVKNGEVVVD 406 (406)
T ss_pred HHHHHHHHhhhcCCCHHHHHHHHHHHHHHHhCCCCCceeeCCCCcCCEEEECCCchhhhhhhhCCCCccEEEECCEEeeC
Confidence 444443333446899999999999999999999877899999999999999975 379999999999985
No 56
>cd01298 ATZ_TRZ_like TRZ/ATZ family contains enzymes from the atrazine degradation pathway and related hydrolases. Atrazine, a chlorinated herbizide, can be catabolized by a variety of different bacteria. The first three steps of the atrazine dehalogenation pathway are catalyzed by atrazine chlorohydrolase (AtzA), hydroxyatrazine ethylaminohydrolase (AtzB), and N-isopropylammelide N-isopropylaminohydrolase (AtzC). All three enzymes belong to the superfamily of metal dependent hydrolases. AtzA and AtzB, beside other related enzymes are represented in this CD.
Probab=99.80 E-value=3.7e-18 Score=171.58 Aligned_cols=55 Identities=33% Similarity=0.511 Sum_probs=50.9
Q ss_pred CCCHHHHHHHHhHHHHHHcCCCCCccccccCCCccEEEEcCC--------------------CceeEEEECCEEec
Q psy12256 361 RCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILDEG--------------------LHVYSTWIAGDLKL 416 (417)
Q Consensus 361 ~~~~~~~l~~~t~~pA~~l~l~~~~G~l~~G~~ADlvv~d~~--------------------~~v~~v~~~G~~v~ 416 (417)
++++.++++++|.|||+++|++ .+|+|++|+.|||+++|.+ .+|..||++|+++|
T Consensus 331 ~~~~~~al~~~T~~~A~~lg~~-~~G~i~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~G~~v~ 405 (411)
T cd01298 331 ALPAEEALEMATIGGAKALGLD-EIGSLEVGKKADLILIDLDGPHLLPVHDPISHLVYSANGGDVDTVIVNGRVVM 405 (411)
T ss_pred cCCHHHHHHHHHhhHHHHhCCc-cCCCcCCCccCCEEEEeCCCCccCCccchhhHheEecCCCCeeEEEECCEEEE
Confidence 6899999999999999999998 5899999999999999964 27899999999987
No 57
>PRK08204 hypothetical protein; Provisional
Probab=99.80 E-value=1e-17 Score=170.58 Aligned_cols=57 Identities=35% Similarity=0.438 Sum_probs=52.5
Q ss_pred cCCCHHHHHHHHhHHHHHHcCCCCCccccccCCCccEEEEcCC--------------------CceeEEEECCEEec
Q psy12256 360 TRCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILDEG--------------------LHVYSTWIAGDLKL 416 (417)
Q Consensus 360 ~~~~~~~~l~~~t~~pA~~l~l~~~~G~l~~G~~ADlvv~d~~--------------------~~v~~v~~~G~~v~ 416 (417)
.++++.++++++|.|+|+.+++++++|+|++||.||||++|.+ .+|..||++|++++
T Consensus 340 ~~~~~~~al~~~T~~gA~~lg~~~~~G~le~Gk~ADlvvld~~~~~~~p~~dp~~~lv~~~~~~~v~~v~v~G~~v~ 416 (449)
T PRK08204 340 LTLTARQVLEWATIEGARALGLEDRIGSLTPGKQADLVLIDATDLNLAPVHDPVGAVVQSAHPGNVDSVMVAGRAVK 416 (449)
T ss_pred CCCCHHHHHHHHhHHHHHHcCCCCCCcccCCCCcCCEEEEcCCCccccCCcChhhhheeccCCCCceEEEECCEEEE
Confidence 4789999999999999999999877899999999999999964 47999999999986
No 58
>TIGR02967 guan_deamin guanine deaminase. This model describes guanine deaminase, which hydrolyzes guanine to xanthine and ammonia. Xanthine can then be converted to urate by xanthine dehydrogenase, and urate subsequently degraded. In some bacteria, the guanine deaminase gene is found near the xdhABC genes for xanthine dehydrogenase. Non-homologous forms of guanine deaminase also exist, as well as distantly related forms outside the scope of this model.
Probab=99.80 E-value=2.6e-17 Score=165.12 Aligned_cols=59 Identities=31% Similarity=0.434 Sum_probs=47.9
Q ss_pred CCCCchhHHHHHhhhc-----cCCCHHHHHHHHhHHHHHHcCCCCCccccccCCCccEEEEcCC
Q psy12256 344 GSITPFNGCVQFFMRS-----TRCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILDEG 402 (417)
Q Consensus 344 g~~~~l~~~~~~~~~~-----~~~~~~~~l~~~t~~pA~~l~l~~~~G~l~~G~~ADlvv~d~~ 402 (417)
+...++...++.++.. .++++.++++|+|.|||+++|+++++|+|++|+.|||+++|.+
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aT~~~A~~lg~~~~~G~i~~G~~ADlvi~d~~ 363 (401)
T TIGR02967 300 GTSFSMLQTLREAYKVSQLQGARLSPFEAFYLATLGGARALDLDDRIGNFEPGKEADFVVLDPA 363 (401)
T ss_pred CCCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHhCCcCCccccCCCCccCEEEEcCC
Confidence 3444566666654432 4689999999999999999999877899999999999999953
No 59
>PRK12393 amidohydrolase; Provisional
Probab=99.78 E-value=1.6e-17 Score=169.20 Aligned_cols=55 Identities=25% Similarity=0.350 Sum_probs=50.3
Q ss_pred CCCHHHHHHHHhHHHHHHcCCCCCccccccCCCccEEEEcCC--------------------CceeEEEECCEEec
Q psy12256 361 RCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILDEG--------------------LHVYSTWIAGDLKL 416 (417)
Q Consensus 361 ~~~~~~~l~~~t~~pA~~l~l~~~~G~l~~G~~ADlvv~d~~--------------------~~v~~v~~~G~~v~ 416 (417)
.+++.++++++|.|||+++++++ +|+|++|+.|||+++|.+ .+|..||++|+++|
T Consensus 354 ~~~~~~~l~~~T~~~A~~l~~~~-~G~l~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~ 428 (457)
T PRK12393 354 ATTVEDVVHWGTAGGARVLGLDA-IGTLAVGQAADLAIYDLDDPRFFGLHDPAIAPVACGGPAPVKALLVNGRPVV 428 (457)
T ss_pred CCCHHHHHHHHhHHHHHHhCCCC-CCCcCCCCcCCEEEEeCCCcccCCCCCchhhhhccCCCCCeeEEEECCEEEE
Confidence 38999999999999999999975 899999999999999964 36999999999986
No 60
>PRK06380 metal-dependent hydrolase; Provisional
Probab=99.78 E-value=1.7e-17 Score=167.32 Aligned_cols=54 Identities=33% Similarity=0.474 Sum_probs=48.8
Q ss_pred CCCHHHHHHHHhHHHHHHcCCCCCccccccCCCccEEEEcCC----------------------CceeEEEECCEEec
Q psy12256 361 RCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILDEG----------------------LHVYSTWIAGDLKL 416 (417)
Q Consensus 361 ~~~~~~~l~~~t~~pA~~l~l~~~~G~l~~G~~ADlvv~d~~----------------------~~v~~v~~~G~~v~ 416 (417)
.+++.++++++|.|+|++||++ .|+|++|+.|||+++|.+ .+|..||++|++++
T Consensus 324 ~~~~~~~l~~aT~~gA~~lg~~--~G~l~~G~~ADlvv~d~~~~~~~p~~~~~~~~~lv~~~~~~~v~~v~v~G~~v~ 399 (418)
T PRK06380 324 IIKAQEILDFATINAAKALELN--AGSIEVGKLADLVILDARAPNMIPTRKNNIVSNIVYSLNPLNVDHVIVNGKILK 399 (418)
T ss_pred cCCHHHHHHHHHHHHHHHhCCC--CCccCCCccCCEEEEeCCCCccCCCCccChHHheeecCCCCceeEEEECCEEEE
Confidence 3799999999999999999993 799999999999999963 26999999999986
No 61
>TIGR01224 hutI imidazolonepropionase. This enzyme catalyzes the third step in histidine degradation.
Probab=99.78 E-value=1.1e-17 Score=166.41 Aligned_cols=67 Identities=33% Similarity=0.454 Sum_probs=57.1
Q ss_pred chhHHHHHhhhccCCCHHHHHHHHhHHHHHHcCCCCCccccccCCCccEEEEcCC-----------CceeEEEECCEE
Q psy12256 348 PFNGCVQFFMRSTRCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILDEG-----------LHVYSTWIAGDL 414 (417)
Q Consensus 348 ~l~~~~~~~~~~~~~~~~~~l~~~t~~pA~~l~l~~~~G~l~~G~~ADlvv~d~~-----------~~v~~v~~~G~~ 414 (417)
.+...++......++++.++++++|.|||+++|+++++|+|++|+.||||++|.+ .+|..||++|++
T Consensus 300 ~~~~~~~~~~~~~~ls~~eal~~~T~~~A~~lg~~~~~G~l~~G~~ADlvv~d~~~~~~~~~~~~~~~v~~v~v~G~~ 377 (377)
T TIGR01224 300 SMQLIMSLACRLMKMTPEEALHAATVNAAYALGLGEERGTLEAGRDADLVILSAPSYAEIPYHYGVNHVHAVIKNGNI 377 (377)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCCceeeCCCCcCCEEEEcCCChHHhhhhcCCCCceEEEECCCC
Confidence 3445555545556899999999999999999999877899999999999999976 379999999974
No 62
>cd01296 Imidazolone-5PH Imidazolonepropionase/imidazolone-5-propionate hydrolase (Imidazolone-5PH) catalyzes the third step in the histidine degradation pathway, the hydrolysis of (S)-3-(5-oxo-4,5-dihydro-3H-imidazol-4-yl)propanoate to N-formimidoyl-L-glutamate. In bacteria, the enzyme is part of histidine utilization (hut) operon.
Probab=99.78 E-value=1.9e-17 Score=164.35 Aligned_cols=64 Identities=33% Similarity=0.396 Sum_probs=55.8
Q ss_pred hhHHHHHhhhccCCCHHHHHHHHhHHHHHHcCCCCCccccccCCCccEEEEcCC-----------CceeEEEECC
Q psy12256 349 FNGCVQFFMRSTRCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILDEG-----------LHVYSTWIAG 412 (417)
Q Consensus 349 l~~~~~~~~~~~~~~~~~~l~~~t~~pA~~l~l~~~~G~l~~G~~ADlvv~d~~-----------~~v~~v~~~G 412 (417)
+...+..++...+++++++++++|.|||+++|+++++|+|++|+.|||+++|.+ .+|..||++|
T Consensus 297 l~~~~~~~~~~~~l~~~~al~~aT~~~A~~lg~~~~~G~i~~G~~ADlvv~d~~~~~~~~~~~~~~~v~~v~~~G 371 (371)
T cd01296 297 MPLVMHLACRLMRMTPEEALTAATINAAAALGLGETVGSLEVGKQADLVILDAPSYEHLAYRFGVNLVEYVIKNG 371 (371)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCCceeeCCCCCcCEEEECCCchHhhhhhcCCCCceEEEeCc
Confidence 556666666666899999999999999999999877899999999999999976 3589999987
No 63
>PRK07213 chlorohydrolase; Provisional
Probab=99.78 E-value=4.2e-17 Score=162.03 Aligned_cols=68 Identities=22% Similarity=0.323 Sum_probs=58.8
Q ss_pred CCchhHHHHHhhhccCCCHHHHHHHHhHHHHHHcCCCCCccccccCCCccEEEEcCC------------------CceeE
Q psy12256 346 ITPFNGCVQFFMRSTRCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILDEG------------------LHVYS 407 (417)
Q Consensus 346 ~~~l~~~~~~~~~~~~~~~~~~l~~~t~~pA~~l~l~~~~G~l~~G~~ADlvv~d~~------------------~~v~~ 407 (417)
..++...++.+.+..++++.++++|+|.|+|+++|+++ .|+|++|+.|||+++|.+ ..|..
T Consensus 290 ~~~~~~e~~~~~~~~~~~~~~~l~~aT~~gA~~lg~~~-~G~l~~G~~ADlvv~d~~~~~p~~dp~~~lV~~~~~~~v~~ 368 (375)
T PRK07213 290 SPSIFREMEFIYKLYHIEPKEILKMATINGAKILGLIN-VGLIEEGFKADFTFIKPTNIKFSKNPYASIITRCESGDIVN 368 (375)
T ss_pred hHhHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHhCCCC-cCCcCCCCcccEEEEcCccccccCCchHHHhhhccCCCceE
Confidence 34577788777665689999999999999999999976 899999999999999842 47999
Q ss_pred EEECCEE
Q psy12256 408 TWIAGDL 414 (417)
Q Consensus 408 v~~~G~~ 414 (417)
||++||+
T Consensus 369 v~v~G~~ 375 (375)
T PRK07213 369 KILKGKL 375 (375)
T ss_pred EEECCcC
Confidence 9999984
No 64
>PRK09061 D-glutamate deacylase; Validated
Probab=99.78 E-value=1.5e-17 Score=170.94 Aligned_cols=69 Identities=30% Similarity=0.459 Sum_probs=59.8
Q ss_pred CchhHHHHHhhhcc-CCCHHHHHHHHhHHHHHHcC-----CCCCccccccCCCccEEEEcCC---------------Cce
Q psy12256 347 TPFNGCVQFFMRST-RCSLVHALEVASLHPAKALG-----LEQHKGTLDFGADADFVILDEG---------------LHV 405 (417)
Q Consensus 347 ~~l~~~~~~~~~~~-~~~~~~~l~~~t~~pA~~l~-----l~~~~G~l~~G~~ADlvv~d~~---------------~~v 405 (417)
..+...+++++++. .+|++++++++|.+||++|| +++ +|+|++|+.|||++||++ ..|
T Consensus 400 ~~~~~~l~~~v~~~~~isl~~ai~~~T~~pA~~lg~~~~~l~~-~G~i~~G~~ADlvv~D~~~~~~~~~~~~~~~~~~gi 478 (509)
T PRK09061 400 GTFARFLREYVRERKALSLLEAIRKCTLMPAQILEDSVPAMRR-KGRLQAGADADIVVFDPETITDRATFEDPNRPSEGV 478 (509)
T ss_pred cchHHHHHHHHhhcccCCHHHHHHHHHHHHHHHhccccccccC-CEeeCCCCCcCEEEEchhhccccccccccCCCCCCc
Confidence 46778888887764 59999999999999999999 865 799999999999999965 137
Q ss_pred eEEEECCEEec
Q psy12256 406 YSTWIAGDLKL 416 (417)
Q Consensus 406 ~~v~~~G~~v~ 416 (417)
..||++|+++|
T Consensus 479 ~~v~v~G~~v~ 489 (509)
T PRK09061 479 RHVLVNGVPVV 489 (509)
T ss_pred eEEEECCEEEE
Confidence 89999999986
No 65
>PRK13985 ureB urease subunit beta; Provisional
Probab=99.77 E-value=8.4e-17 Score=161.77 Aligned_cols=57 Identities=21% Similarity=0.325 Sum_probs=52.2
Q ss_pred CCCHHHHHHHHhHHHHHHcCCCCCccccccCCCccEEEEcCC---CceeEEEECCEEecC
Q psy12256 361 RCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILDEG---LHVYSTWIAGDLKLT 417 (417)
Q Consensus 361 ~~~~~~~l~~~t~~pA~~l~l~~~~G~l~~G~~ADlvv~d~~---~~v~~v~~~G~~v~~ 417 (417)
+++..++|++.|.|||+++|+++++|+|++||.|||||||++ .+++.||++|+++|.
T Consensus 398 nl~v~eAL~~yTin~A~A~G~e~~vGSLe~GK~ADlVv~d~d~f~~~pe~vi~~G~iv~~ 457 (568)
T PRK13985 398 NFRIKRYLSKYTINPAIAHGISEYVGSVEVGKVADLVLWSPAFFGVKPNMIIKGGFIALS 457 (568)
T ss_pred ccCHHHHHHHHhHHHHHHcCcccCceeECCCCccCEEEEcCccCCCChheEEECCEEEEc
Confidence 366779999999999999999988999999999999999986 578999999999984
No 66
>cd01318 DHOase_IIb Dihydroorotase (DHOase), subgroup IIb; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis. This group contains the archeal members of the DHOase family.
Probab=99.77 E-value=1.2e-17 Score=164.65 Aligned_cols=60 Identities=25% Similarity=0.360 Sum_probs=47.7
Q ss_pred CCCCCCCchhHHHHHhhhccCCCHHHHHHHHhHHHHHHcCCCCCccccccCCCccEEEEcCC
Q psy12256 341 NNGGSITPFNGCVQFFMRSTRCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILDEG 402 (417)
Q Consensus 341 ~~~g~~~~l~~~~~~~~~~~~~~~~~~l~~~t~~pA~~l~l~~~~G~l~~G~~ADlvv~d~~ 402 (417)
++.|....+.. +..++++.+++++++++++|.|||+++|+++ +|+|++|++|||+++|++
T Consensus 267 G~~g~e~~l~~-~~~~v~~~~l~l~~a~~~~t~nPA~~lgl~~-~G~i~~G~~ADlvv~d~~ 326 (361)
T cd01318 267 GIPGVETALPL-MLTLVNKGILSLSRVVRLTSHNPARIFGIKN-KGRIAEGYDADLTVVDLK 326 (361)
T ss_pred CCccHHHHHHH-HHHHHHcCCCCHHHHHHHHhHHHHHHhCCCC-CCccCCCCcCCEEEEeCC
Confidence 34443333333 3346666789999999999999999999975 799999999999999975
No 67
>cd01302 Cyclic_amidohydrolases Cyclic amidohydrolases, including hydantoinase, dihydropyrimidinase, allantoinase, and dihydroorotase, are involved in the metabolism of pyrimidines and purines, sharing the property of hydrolyzing the cyclic amide bond of each substrate to the corresponding N-carbamyl amino acids. Allantoinases catalyze the degradation of purines, while dihydropyrimidinases and hydantoinases, a microbial counterpart of dihydropyrimidinase, are involved in pyrimidine degradation. Dihydroorotase participates in the de novo synthesis of pyrimidines.
Probab=99.77 E-value=7.7e-17 Score=157.75 Aligned_cols=294 Identities=20% Similarity=0.182 Sum_probs=157.7
Q ss_pred CEeeccchhhcccCCCCCCCCCCCCCcHHHHHHHHHHHHhCCceeeeeccCCCCHHHHHHHHHHHHcCCCCCCCceeEEe
Q psy12256 11 KLIAPGFIDIQINGGFGVDFSHDIDSVDKNVSIVARGILAHGVTSFCPTLVTSEPQVYKKVLSRLRKTPGGKHGATVLGA 90 (417)
Q Consensus 11 ~~v~PG~ID~H~H~~~g~~~~~~~~~~~~~~~~~~~~~~~~GvTt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 90 (417)
++|+||+||+|+|+.... .. .+.+++++.+++++.+||||++++.++.|..+..+.++...+.... .+...+++
T Consensus 1 ~~vlPG~iD~HvH~r~pg-~~----~~~e~~~t~t~aA~~GG~Ttv~~mpn~~p~~~~~~~~~~~~~~a~~-~~~~d~~~ 74 (337)
T cd01302 1 LLVLPGFIDIHVHLRDPG-GT----TYKEDFESGSRAAAAGGVTTVIDMPNTGPPPIDLPAIELKIKLAEE-SSYVDFSF 74 (337)
T ss_pred CEecCCeeEeeeccCCCC-CC----CchhHHHHHHHHHHhCCCcEEEECCCCCCCCCcHHHHHHHHHHhCc-CcEeeEEE
Confidence 589999999999986311 11 1367899999999999999999998877655444555444333311 23345565
Q ss_pred eeeCCCCCCCCCCCCCCcccCCCcHHHHHHHHHhCCCCCEEEEEec--CC---C--CChHHHHHHHHHCCCeeeecCCcC
Q psy12256 91 HVEGPFISPDKKGAHSLSKIVTFDKGFDSVREVYGNLSNIAIITLA--PE---L--AGSMEVIDKLVEQGITVSLGHSSA 163 (417)
Q Consensus 91 ~leGp~~~~~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~ik~~~~~--pe---~--~~~~~~i~~~~~~gi~v~~GH~~~ 163 (417)
+..+. . + + .. +++.++.+ .|. ..+|++... +. . ....+.++.+.+.|..+.+ |.+
T Consensus 75 ~~~~~---~---~----~---~~-~el~~l~~-~Gv-~g~K~f~~~~~~~~~~~~~~~l~~~~~~~~~~g~~v~~-H~E- 136 (337)
T cd01302 75 HAGIG---P---G----D---VT-DELKKLFD-AGI-NSLKVFMNYYFGELFDVDDGTLMRTFLEIASRGGPVMV-HAE- 136 (337)
T ss_pred EEecc---C---c----c---CH-HHHHHHHH-cCC-cEEEEEEeccCCCccccCHHHHHHHHHHHHhcCCeEEE-eHH-
Confidence 54221 0 1 0 00 34555543 342 346766421 11 1 2246788888888999887 885
Q ss_pred CHHHHHHHHHCCCC-eEeeCCCCcc--ccc-ccCCceEEeecCCCCCCCceEEEEecCCCcCCHHHHHHHHhhCCCCCCC
Q psy12256 164 DINIAEEAVRHGAS-LITHLFNAML--PFH-HRDPGIIGLLSSDNIDSSKVYYGIIADGVHTHPSALRIANSTHPEGHSS 239 (417)
Q Consensus 164 ~~~~~~~a~~~G~~-~i~Hl~~~~~--~~~-~r~~g~~~~~~~~~l~~~~~~~~~i~dg~h~~~~~~~~~~~~~~~~h~~ 239 (417)
..+.-+.+.|++ ++.|+-.... .+. .++.|+ .+.+|...+ |..
T Consensus 137 --r~~~la~~~g~~l~i~Hiss~~~le~i~~ak~~g~------------~vt~ev~ph-------------------~L~ 183 (337)
T cd01302 137 --RAAQLAEEAGANVHIAHVSSGEALELIKFAKNKGV------------KVTCEVCPH-------------------HLF 183 (337)
T ss_pred --HHHHHHHHhCCcEEEEeCCCHHHHHHHHHHHHCCC------------cEEEEcChh-------------------hhe
Confidence 333344456776 4777653211 000 011111 123332211 111
Q ss_pred CCHHHHHHHHHccceeeeccccccCCCCCCCCccccccccccccCCcceeeeeCCceeeChHHHHHHHhcCCCCeEEeeC
Q psy12256 240 ADIHIAEEAVRHGASLITHLFNAMLPFHHRDPGIIGLLSSDNIDSSKVYYGIIADGVHTHPSALRIANSTHPEGSITPFN 319 (417)
Q Consensus 240 ~~~e~~~~a~~~g~~~~td~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~i~dg~~~~~~~l~~~~~~~~~~~~~~~d 319 (417)
.+.+... ..+.. +...||+..++ .. ...++. .+.+ ...++.+|
T Consensus 184 l~~~~~~---~~~~~-----~k~~Pplr~~~-~~--------------------------~~L~~~-l~~G-~id~i~sD 226 (337)
T cd01302 184 LDESMLR---LNGAW-----GKVNPPLRSKE-DR--------------------------EALWEG-VKNG-KIDTIASD 226 (337)
T ss_pred eCHHHhh---CCCce-----EEEeCCCCCHH-HH--------------------------HHHHHH-HhCC-CCCEEecC
Confidence 1111110 00001 11123322211 00 000000 0000 01244454
Q ss_pred Ceeeeeeeccc--ccceeeCCCCCCCCCCCchhHHHHHhhhccCCCHHHHHHHHhHHHHHHcCCCCCccccccCCCccEE
Q psy12256 320 GCVQFFMRSTR--CSLWFDLGNCNNGGSITPFNGCVQFFMRSTRCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFV 397 (417)
Q Consensus 320 ~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~l~~~t~~pA~~l~l~~~~G~l~~G~~ADlv 397 (417)
... +...... .+ +.....++.|....+...++.+++ .+++++++++++|.|||+++|+.+ +|+|++|++|||+
T Consensus 227 h~p-~~~~~k~~~~~--~~~a~~G~~g~e~~l~~~~~~~~~-~~i~~~~~~~~~s~~pA~~~gl~~-~g~i~~G~~ADlv 301 (337)
T cd01302 227 HAP-HSKEEKESGKD--IWKAPPGFPGLETRLPILLTEGVK-RGLSLETLVEILSENPARIFGLYP-KGTIAVGYDADLV 301 (337)
T ss_pred CCC-CCHHHhccCCC--cccCCCCcccHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHcCCCC-CCccccCCcCCEE
Confidence 432 1100000 00 112234566666777777777776 489999999999999999999976 6999999999999
Q ss_pred EEcCCC
Q psy12256 398 ILDEGL 403 (417)
Q Consensus 398 v~d~~~ 403 (417)
++|++.
T Consensus 302 i~d~~~ 307 (337)
T cd01302 302 IVDPKK 307 (337)
T ss_pred EEeCCC
Confidence 999873
No 68
>PRK13207 ureC urease subunit alpha; Reviewed
Probab=99.76 E-value=8.2e-17 Score=163.47 Aligned_cols=50 Identities=20% Similarity=0.347 Sum_probs=47.2
Q ss_pred HHHHhHHHHHHcCCCCCccccccCCCccEEEEcCCC---ceeEEEECCEEecC
Q psy12256 368 LEVASLHPAKALGLEQHKGTLDFGADADFVILDEGL---HVYSTWIAGDLKLT 417 (417)
Q Consensus 368 l~~~t~~pA~~l~l~~~~G~l~~G~~ADlvv~d~~~---~v~~v~~~G~~v~~ 417 (417)
|+++|.|||+.+|+++.+|+|++|+.||||+||++. ++..||++|+++|.
T Consensus 405 l~~~T~npA~alG~~~~vGsIe~Gk~ADlVvld~d~f~~~~~~ti~~G~iv~~ 457 (568)
T PRK13207 405 IAKYTINPAIAHGISHEVGSVEVGKLADLVLWKPAFFGVKPELVLKGGMIAWA 457 (568)
T ss_pred HHHHhHHHHHHcCCCcCccccCCCCcCCEEEECchhcCCCceEEEECCEEEEe
Confidence 899999999999999889999999999999999986 89999999999873
No 69
>cd00375 Urease_alpha Urease alpha-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, fungi and plants. Their primary role is to allow the use of external and internally generated urea as a nitrogen source. The enzyme consists of 3 subunits, alpha, beta and gamma, which can be fused and present on a single protein chain and which in turn forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=99.76 E-value=2.2e-16 Score=159.26 Aligned_cols=71 Identities=14% Similarity=0.171 Sum_probs=56.7
Q ss_pred CchhHHHHHhhhccCC--------CHHHH---HHHHhHHHHHHcCCCCCccccccCCCccEEEEcCC---CceeEEEECC
Q psy12256 347 TPFNGCVQFFMRSTRC--------SLVHA---LEVASLHPAKALGLEQHKGTLDFGADADFVILDEG---LHVYSTWIAG 412 (417)
Q Consensus 347 ~~l~~~~~~~~~~~~~--------~~~~~---l~~~t~~pA~~l~l~~~~G~l~~G~~ADlvv~d~~---~~v~~v~~~G 412 (417)
..+++...++.+..|. +...+ +++.|.|||+++|+++++|+|++||.||||||+++ .++..||++|
T Consensus 373 ~r~~q~a~k~~~~~g~~~~~~~~~~n~r~~~~L~~~Tin~A~alG~~~~vGSLe~GK~ADlVv~d~~~f~~~p~~vi~~G 452 (567)
T cd00375 373 LRTWQTAHKMKAQRGPLPEDSGDADNFRVKRYIAKYTINPAIAHGISHEVGSVEVGKLADLVLWEPAFFGVKPEMVLKGG 452 (567)
T ss_pred echHHHHHHHHHhcCCCCcccccCchHHHHHHHHHhhHHHHHHcCcccCceeeCCCCccCEEEEcCcccCCCeeEEEECC
Confidence 3455555555553442 33334 99999999999999988999999999999999986 5789999999
Q ss_pred EEecC
Q psy12256 413 DLKLT 417 (417)
Q Consensus 413 ~~v~~ 417 (417)
+++|.
T Consensus 453 ~iv~~ 457 (567)
T cd00375 453 FIAYA 457 (567)
T ss_pred EEEEe
Confidence 99984
No 70
>PRK13206 ureC urease subunit alpha; Reviewed
Probab=99.76 E-value=1.5e-16 Score=161.25 Aligned_cols=57 Identities=18% Similarity=0.311 Sum_probs=53.0
Q ss_pred CCCHHHHHHHHhHHHHHHcCCCCCccccccCCCccEEEEcCCC---ceeEEEECCEEecC
Q psy12256 361 RCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILDEGL---HVYSTWIAGDLKLT 417 (417)
Q Consensus 361 ~~~~~~~l~~~t~~pA~~l~l~~~~G~l~~G~~ADlvv~d~~~---~v~~v~~~G~~v~~ 417 (417)
.++..++|++.|.|||+++|+++.+|+|++|+.||||+||++. ++..||++|+++|.
T Consensus 403 ~~~v~~al~~yT~nPA~alG~~~~~GsLe~Gk~ADlVvld~d~f~~~~~~ti~~G~iv~~ 462 (573)
T PRK13206 403 NNRARRYVAKYTICPAVAHGIDHEIGSVEVGKLADLVLWEPAFFGVRPHAVLKGGAIAWA 462 (573)
T ss_pred chhHHHHHHHHHHHHHHHhCCCcCCcccCCCCcCCEEEECccccCCCccEEEECCEEEEe
Confidence 3789999999999999999998779999999999999999986 89999999999873
No 71
>PRK13308 ureC urease subunit alpha; Reviewed
Probab=99.76 E-value=6.4e-17 Score=163.22 Aligned_cols=50 Identities=22% Similarity=0.317 Sum_probs=47.4
Q ss_pred HHHHHhHHHHHHcCCCCCccccccCCCccEEEEcCCC---ceeEEEECCEEec
Q psy12256 367 ALEVASLHPAKALGLEQHKGTLDFGADADFVILDEGL---HVYSTWIAGDLKL 416 (417)
Q Consensus 367 ~l~~~t~~pA~~l~l~~~~G~l~~G~~ADlvv~d~~~---~v~~v~~~G~~v~ 416 (417)
.++++|.|||+++|+++++|+|++|+.||||+||++. ++..||++|+++|
T Consensus 405 ~L~~~T~npA~alGi~~~vGsLe~Gk~ADLVv~d~d~fgv~p~~ti~~G~iv~ 457 (569)
T PRK13308 405 YIAKYTINPAITFGIDDHIGSLEPGKLADIVLWRPAFFGIKPELVIKGGFPAW 457 (569)
T ss_pred HHHHHhHHHHHHcCCCCCceeeCCCCcCCEEEECCcccCCCeeEEEECCEEEE
Confidence 6999999999999998889999999999999999986 8999999999987
No 72
>cd01312 Met_dep_hydrolase_D Metallo-dependent hydrolases, subgroup D is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=99.76 E-value=4.1e-17 Score=162.08 Aligned_cols=66 Identities=24% Similarity=0.330 Sum_probs=53.6
Q ss_pred CCchhHHHHHhhhcc-----CCCHHHHHHHHhHHHHHHcCCCCCccccccCCCccEEEEcCC----------------Cc
Q psy12256 346 ITPFNGCVQFFMRST-----RCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILDEG----------------LH 404 (417)
Q Consensus 346 ~~~l~~~~~~~~~~~-----~~~~~~~l~~~t~~pA~~l~l~~~~G~l~~G~~ADlvv~d~~----------------~~ 404 (417)
..++...++.+.... .+++.++++|+|.|+|++||++ .|+|++||.||||++|.+ ..
T Consensus 295 ~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~aT~~gA~alg~~--~Gsle~Gk~ADlvv~d~~~~~~~~~~~~~~~~~~~~ 372 (381)
T cd01312 295 SLSLLDELRALLDLHPEEDLLELASELLLMATLGGARALGLN--NGEIEAGKRADFAVFELPGPGIKEQAPLQFILHAKE 372 (381)
T ss_pred CCCHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhCCC--CCccCCCCcccEEEEeCCCcCCCCccHHHHHHccCC
Confidence 345666666555422 2678999999999999999995 799999999999999953 37
Q ss_pred eeEEEECCE
Q psy12256 405 VYSTWIAGD 413 (417)
Q Consensus 405 v~~v~~~G~ 413 (417)
|..|||+||
T Consensus 373 v~~v~v~G~ 381 (381)
T cd01312 373 VRHLFISGK 381 (381)
T ss_pred CCEEEecCC
Confidence 999999996
No 73
>cd01303 GDEase Guanine deaminase (GDEase). Guanine deaminase is an aminohydrolase responsible for the conversion of guanine to xanthine and ammonia, the first step to utilize guanine as a nitrogen source. This reaction also removes the guanine base from the pool and therefore can play a role in the regulation of cellular GTP and the guanylate nucleotide pool.
Probab=99.76 E-value=1.2e-16 Score=161.37 Aligned_cols=42 Identities=33% Similarity=0.536 Sum_probs=39.0
Q ss_pred CCCHHHHHHHHhHHHHHHcCCCCCccccccCCCccEEEEcCC
Q psy12256 361 RCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILDEG 402 (417)
Q Consensus 361 ~~~~~~~l~~~t~~pA~~l~l~~~~G~l~~G~~ADlvv~d~~ 402 (417)
++++.++++|+|.|||+++|+++++|+|++||+|||+++|.+
T Consensus 350 ~~~~~~al~~aT~~gA~~lg~~~~~Gsle~Gk~ADlvvld~~ 391 (429)
T cd01303 350 KLSPAEAFYLATLGGAEALGLDDKIGNFEVGKEFDAVVIDPS 391 (429)
T ss_pred CCCHHHHHHHHhhHHHHHcCCCCCCcCcCCCCccCEEEEcCC
Confidence 479999999999999999999877899999999999999854
No 74
>PLN02303 urease
Probab=99.75 E-value=7.1e-17 Score=167.94 Aligned_cols=56 Identities=18% Similarity=0.300 Sum_probs=52.0
Q ss_pred CCHHHHHHHHhHHHHHHcCCCCCccccccCCCccEEEEcCC---CceeEEEECCEEecC
Q psy12256 362 CSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILDEG---LHVYSTWIAGDLKLT 417 (417)
Q Consensus 362 ~~~~~~l~~~t~~pA~~l~l~~~~G~l~~G~~ADlvv~d~~---~~v~~v~~~G~~v~~ 417 (417)
.+..++|++.|.|||+++|+++++|+|++||.||||||+++ .++..||++|+++|.
T Consensus 668 ~rv~~aL~~~TiN~A~AlG~~~~vGSLe~GK~ADlVvw~~~~fg~~~~~vi~~G~ivy~ 726 (837)
T PLN02303 668 FRIKRYIAKYTINPAIAHGMSHFVGSVEVGKLADLVLWKPAFFGAKPEMVIKGGQIAWA 726 (837)
T ss_pred cCHHHHHHHHhHHHHHHCCcccCceeeCCCcccCEEEecccccCCCeeEEEECCEEEEc
Confidence 45699999999999999999998999999999999999986 579999999999984
No 75
>PRK07203 putative chlorohydrolase/aminohydrolase; Validated
Probab=99.75 E-value=2.8e-17 Score=166.86 Aligned_cols=55 Identities=22% Similarity=0.246 Sum_probs=47.9
Q ss_pred CCHHHHHHHHhHHHHHHcC--CCCCccccccCCCccEEEEcCC--------------------CceeEEEECCEEec
Q psy12256 362 CSLVHALEVASLHPAKALG--LEQHKGTLDFGADADFVILDEG--------------------LHVYSTWIAGDLKL 416 (417)
Q Consensus 362 ~~~~~~l~~~t~~pA~~l~--l~~~~G~l~~G~~ADlvv~d~~--------------------~~v~~v~~~G~~v~ 416 (417)
+++.++++|+|.|+|++++ +.++.|+|++|+.|||+++|.+ ..|..||++|++++
T Consensus 338 ~~~~~~~~~aT~~gA~~lg~~~~~~~G~l~~G~~ADlvv~d~~~~~~~~~~~~~~~~v~~~~~~~v~~v~v~G~~v~ 414 (442)
T PRK07203 338 VGWPESPAMLFENNNKIAERYFGAKFGILEEGAKADLIIVDYNPPTPLNEDNINGHILFGMNGGSVDTTIVNGKVVM 414 (442)
T ss_pred CCHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCccCEEEEcCCCCeecCccccccceEeecCCCceEEEEECCEEEE
Confidence 3478999999999999999 4556899999999999999953 46889999999986
No 76
>TIGR03121 one_C_dehyd_A formylmethanofuran dehydrogenase subunit A. Members of this largely archaeal protein family are subunit A of the formylmethanofuran dehydrogenase. Nomenclature in some bacteria may reflect inclusion of the formyltransferase described by TIGR03119 as part of the complex, and therefore call this protein formyltransferase/hydrolase complex Fhc subunit A. Note that this model does not distinguish tungsten (FwdA) from molybdenum-containing (FmdA) forms of this enzyme; a single gene from this family is expressed constitutively in Methanobacterium thermoautotrophicum, which has both tungsten and molybdenum forms and may work interchangeably.
Probab=99.75 E-value=1.3e-17 Score=168.53 Aligned_cols=56 Identities=30% Similarity=0.460 Sum_probs=50.6
Q ss_pred cCCCHHHHHHHHhHHHHHHcCCCCCccccccCCCccEEEEcCC---------------CceeEEEECCEEec
Q psy12256 360 TRCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILDEG---------------LHVYSTWIAGDLKL 416 (417)
Q Consensus 360 ~~~~~~~~l~~~t~~pA~~l~l~~~~G~l~~G~~ADlvv~d~~---------------~~v~~v~~~G~~v~ 416 (417)
.++|++++++|+|.|||++||+.+ +|.|++|+.|||+|+|.+ .++..||++|++++
T Consensus 428 Re~sL~EI~~mtTanPAkaLGL~d-kG~L~pGa~ADIaI~D~~~~~~~~~~~~v~~~~~~v~~Tik~G~vV~ 498 (556)
T TIGR03121 428 REYSLYEIAIMTRAGPAKLLGLTD-RGHLGVGADADIAVYDINPDDVDTDYADVEKAFSTALYVFKDGEIVV 498 (556)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCC-CCCcCCCCcCCEEEEeCcccccCCchHHHhhccCCccEEEECCEEEE
Confidence 469999999999999999999976 799999999999999852 45899999999986
No 77
>PRK14085 imidazolonepropionase; Provisional
Probab=99.74 E-value=3.3e-16 Score=156.09 Aligned_cols=64 Identities=28% Similarity=0.353 Sum_probs=52.4
Q ss_pred hhHHHHHhhhccCCCHHHHHHHHhHHHHHHcCCCCCccccccCCCccEEEEcCCCceeEEEECCE
Q psy12256 349 FNGCVQFFMRSTRCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILDEGLHVYSTWIAGD 413 (417)
Q Consensus 349 l~~~~~~~~~~~~~~~~~~l~~~t~~pA~~l~l~~~~G~l~~G~~ADlvv~d~~~~v~~v~~~G~ 413 (417)
+...+...+...++++.++++++|.|||+++|+++ .|+|++|+.|||+++|.+.....+++.|.
T Consensus 311 ~~~~~~~~~~~~~l~~~~al~~aT~~~A~~lg~~~-~G~l~~G~~ADlvv~d~~~~~~~~~~~g~ 374 (382)
T PRK14085 311 MPFCVALAVRQMGMTPAEAVWAATAGGARALRRDD-VGVLAVGARADLHVLDAPSHLHLAYRPGV 374 (382)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCC-CCCcCCCCCCCEEEEcCCCCceeeEeCCC
Confidence 33444444555689999999999999999999975 89999999999999998766666777664
No 78
>COG3454 Metal-dependent hydrolase involved in phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=99.74 E-value=4.1e-16 Score=144.10 Aligned_cols=67 Identities=25% Similarity=0.372 Sum_probs=54.2
Q ss_pred hhHHHHHhhhc-cCCCHHHHHHHHhHHHHHHcCCCCCccccccCCCccEEEEcCC---CceeEEEECCEEec
Q psy12256 349 FNGCVQFFMRS-TRCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILDEG---LHVYSTWIAGDLKL 416 (417)
Q Consensus 349 l~~~~~~~~~~-~~~~~~~~l~~~t~~pA~~l~l~~~~G~l~~G~~ADlvv~d~~---~~v~~v~~~G~~v~ 416 (417)
|......+... ..+++.+|++|.|.|||+.+|+.+ +|+|+||++|||+.+..+ ..|..||+.||.|+
T Consensus 307 Ll~A~F~La~~~~~~~lpqAvalvt~nPA~algl~D-RG~Ia~GlrADlv~v~~~~~vp~ir~vwr~G~rv~ 377 (377)
T COG3454 307 LLHAAFRLADLGSNISLPQAVALVTKNPARALGLTD-RGRIAPGLRADLVRVRRDGGVPVIRTVWRAGKRVA 377 (377)
T ss_pred HHHHHHHHhhhhcccCHHHHHHHhccCHHHhcCCCc-ccccccccccceEEEecCCCCceeeeeeecceecC
Confidence 33433333333 345999999999999999999996 899999999999977654 67999999999875
No 79
>cd01293 Bact_CD Bacterial cytosine deaminase and related metal-dependent hydrolases. Cytosine deaminases (CDs) catalyze the deamination of cytosine, producing uracil and ammonia. They play an important role in pyrimidine salvage. CDs are present in prokaryotes and fungi, but not mammalian cells. The bacterial enzymes, but not the fungal enzymes, are related to the adenosine deaminases (ADA). The bacterial enzymes are iron dependent and hexameric.
Probab=99.73 E-value=3.3e-16 Score=156.74 Aligned_cols=66 Identities=21% Similarity=0.245 Sum_probs=53.0
Q ss_pred chhHHHHHhhhccCCCH----HHHHHHHhHHHHHHcCCCCCccccccCCCccEEEEcCC---------CceeEEEECCEE
Q psy12256 348 PFNGCVQFFMRSTRCSL----VHALEVASLHPAKALGLEQHKGTLDFGADADFVILDEG---------LHVYSTWIAGDL 414 (417)
Q Consensus 348 ~l~~~~~~~~~~~~~~~----~~~l~~~t~~pA~~l~l~~~~G~l~~G~~ADlvv~d~~---------~~v~~v~~~G~~ 414 (417)
++...++.+....+++. .++++++|.|+|+++|+ + .|+|++||.||||++|.+ .++..||++|++
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~al~~aT~~~A~~lg~-~-~G~l~~Gk~ADlv~~d~~~~~~~~~~~~~~~~v~~~G~~ 397 (398)
T cd01293 320 DMLEVANLAAHIAQLGTPEDLALALDLITGNAARALGL-E-DYGIKVGCPADLVLLDAEDVAEAVARQPPRRVVIRKGRV 397 (398)
T ss_pred CHHHHHHHHHHHHcCCChhhHHHHHHhcChhhhhhcCC-c-CcccccCCcceEEEECCCCHHHHHhcCCCccEEEECCEE
Confidence 45566655443345533 68999999999999999 4 799999999999999975 379999999987
Q ss_pred e
Q psy12256 415 K 415 (417)
Q Consensus 415 v 415 (417)
+
T Consensus 398 ~ 398 (398)
T cd01293 398 V 398 (398)
T ss_pred C
Confidence 4
No 80
>PRK06151 N-ethylammeline chlorohydrolase; Provisional
Probab=99.73 E-value=2.9e-16 Score=161.25 Aligned_cols=55 Identities=31% Similarity=0.475 Sum_probs=50.5
Q ss_pred CCCHHHHHHHHhHHHHHHcCCCCCccccccCCCccEEEEcCC--------------------CceeEEEECCEEec
Q psy12256 361 RCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILDEG--------------------LHVYSTWIAGDLKL 416 (417)
Q Consensus 361 ~~~~~~~l~~~t~~pA~~l~l~~~~G~l~~G~~ADlvv~d~~--------------------~~v~~v~~~G~~v~ 416 (417)
.+++.++++++|.|||+++|+++ +|+|++|+.|||+++|.+ .+|..||++|+++|
T Consensus 363 ~~~~~~al~~aT~~~A~~lg~~~-~G~I~~G~~ADlvvld~~~~~~~~~~d~~~~lv~~~~~~~v~~v~v~G~~v~ 437 (488)
T PRK06151 363 AASAADLFDAATLGGARALGRDD-LGRLAPGAKADIVVFDLDGLHMGPVFDPIRTLVTGGSGRDVRAVFVDGRVVM 437 (488)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCC-CcccCCCCcCCEEEEeCCccccCCccCHHHHHHhhCCCCCccEEEECCEEEE
Confidence 37999999999999999999976 799999999999999964 26999999999987
No 81
>cd01313 Met_dep_hydrolase_E Metallo-dependent hydrolases, subgroup D is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=99.72 E-value=2.8e-16 Score=158.29 Aligned_cols=51 Identities=35% Similarity=0.413 Sum_probs=45.8
Q ss_pred CCCHHHHHHHHhHHHHHHcCCCCCccccccCCCccEEEEcCC----------------------CceeEEEECCE
Q psy12256 361 RCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILDEG----------------------LHVYSTWIAGD 413 (417)
Q Consensus 361 ~~~~~~~l~~~t~~pA~~l~l~~~~G~l~~G~~ADlvv~d~~----------------------~~v~~v~~~G~ 413 (417)
.+++.++++|+|.|+|+++|++ .|+|++||.|||+++|.+ ..|..|||+|+
T Consensus 346 ~~~~~~~l~~~T~~gA~alg~~--~Gsle~Gk~ADlvvld~~~~~~~p~~~~~~~~~lv~~~~~~~V~~v~V~G~ 418 (418)
T cd01313 346 GSSARALLDAALAGGAQALGLA--TGALEAGARADLLSLDLDHPSLAGALPDTLLDAWVFAAGDREVRDVVVGGR 418 (418)
T ss_pred CCCHHHHHHHHHHHHHHHhCCC--CCeECCCCccCEEEEcCCCccccCCCchhHHHHHeecCCCCceeEEEeCCC
Confidence 6899999999999999999995 799999999999999953 35888888885
No 82
>PRK08418 chlorohydrolase; Provisional
Probab=99.71 E-value=4.6e-16 Score=156.09 Aligned_cols=70 Identities=23% Similarity=0.190 Sum_probs=55.1
Q ss_pred CCCchhHHHHHhhhc-cC----CCHHHHHHHHhHHHHHHcCCCCCccccccCCCccEEEEcCC-----------------
Q psy12256 345 SITPFNGCVQFFMRS-TR----CSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILDEG----------------- 402 (417)
Q Consensus 345 ~~~~l~~~~~~~~~~-~~----~~~~~~l~~~t~~pA~~l~l~~~~G~l~~G~~ADlvv~d~~----------------- 402 (417)
...++..+++..... .+ .++.++++|+|.|+|+++|++ .|+|++|+.|||+++|.+
T Consensus 317 ~~~~~~~em~~~~~~~~~~~~~~~~~~~l~~aT~~gA~alg~~--~G~l~~G~~ADlv~~d~~~~~~~~~~~~~~~~~~~ 394 (408)
T PRK08418 317 ISLSLLDELRAALLTHANMPLLELAKILLLSATRYGAKALGLN--NGEIKEGKDADLSVFELPEECTKKEQLPLQFILHA 394 (408)
T ss_pred CCcCHHHHHHHHHHHhccCCccccHHHHHHHHHHHHHHHhCCC--CccccCCCccCEEEEeCCCCCCChhHhHHHHHhcc
Confidence 345677777654321 12 236899999999999999995 699999999999999964
Q ss_pred CceeEEEECCEEec
Q psy12256 403 LHVYSTWIAGDLKL 416 (417)
Q Consensus 403 ~~v~~v~~~G~~v~ 416 (417)
..|..||++|+++.
T Consensus 395 ~~v~~v~v~G~~v~ 408 (408)
T PRK08418 395 KEVKKLFIGGKEVK 408 (408)
T ss_pred CccceEEECCEEcC
Confidence 25899999999873
No 83
>PRK09229 N-formimino-L-glutamate deiminase; Validated
Probab=99.71 E-value=5.4e-16 Score=158.01 Aligned_cols=54 Identities=33% Similarity=0.431 Sum_probs=48.5
Q ss_pred CCCHHHHHHHHhHHHHHHcCCCCCccccccCCCccEEEEcCC----------------------CceeEEEECCEEec
Q psy12256 361 RCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILDEG----------------------LHVYSTWIAGDLKL 416 (417)
Q Consensus 361 ~~~~~~~l~~~t~~pA~~l~l~~~~G~l~~G~~ADlvv~d~~----------------------~~v~~v~~~G~~v~ 416 (417)
.+++.++++|+|.|+|+++|+ + +|+|++||.|||+++|.+ .+|..||++|+++|
T Consensus 356 ~~~~~~~l~~aT~~gA~alg~-~-~GsLe~Gk~ADlvvld~~~~~~~~~~~~~~~~~lv~~~~~~~V~~v~V~G~~v~ 431 (456)
T PRK09229 356 PSVGRRLFDAALAGGAQALGR-A-IGGLAVGARADLVVLDLDHPALAGREGDALLDRWVFAGGDAAVRDVWVAGRWVV 431 (456)
T ss_pred cchHHHHHHHHHHHHHHHhCC-C-cCCcCCCCccCEEEEeCCCccccCCChhhHHHHHhhcCCCCCeeEEEECCEEEE
Confidence 457889999999999999999 4 899999999999999943 36889999999987
No 84
>TIGR01792 urease_alph urease, alpha subunit. This model describes the urease alpha subunit UreC (designated beta or B chain, UreB in Helicobacter species). Accessory proteins for incorporation of the nickel cofactor are usually found in addition to the urease alpha, beta, and gamma subunits. The trusted cutoff is set above the scores of many reported fragments and of a putative second urease alpha chain in Streptomyces coelicolor.
Probab=99.70 E-value=8.5e-16 Score=156.33 Aligned_cols=49 Identities=18% Similarity=0.327 Sum_probs=46.2
Q ss_pred HHHHhHHHHHHcCCCCCccccccCCCccEEEEcCC---CceeEEEECCEEec
Q psy12256 368 LEVASLHPAKALGLEQHKGTLDFGADADFVILDEG---LHVYSTWIAGDLKL 416 (417)
Q Consensus 368 l~~~t~~pA~~l~l~~~~G~l~~G~~ADlvv~d~~---~~v~~v~~~G~~v~ 416 (417)
|++.|.|||+++|+++++|+|++||.|||||||++ .+++.||++|+++|
T Consensus 404 L~~yT~n~A~a~g~~~~~GsLe~Gk~ADlVv~~~d~f~~~p~~v~~~G~i~~ 455 (567)
T TIGR01792 404 VAKYTINPAITHGISDYIGSIEVGKLADLVLWEPAFFGVKPDMVLKGGLIAW 455 (567)
T ss_pred HHHHhHHHHHHcCcccCceeeCCCCccCEEEEcCcccCCChheEEECCEEEE
Confidence 89999999999999988999999999999999987 46899999999987
No 85
>PRK06038 N-ethylammeline chlorohydrolase; Provisional
Probab=99.70 E-value=2.9e-16 Score=158.83 Aligned_cols=55 Identities=35% Similarity=0.465 Sum_probs=49.7
Q ss_pred cCCCHHHHHHHHhHHHHHHcCCCCCccccccCCCccEEEEcCC--------------------CceeEEEECCEEec
Q psy12256 360 TRCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILDEG--------------------LHVYSTWIAGDLKL 416 (417)
Q Consensus 360 ~~~~~~~~l~~~t~~pA~~l~l~~~~G~l~~G~~ADlvv~d~~--------------------~~v~~v~~~G~~v~ 416 (417)
.++++.++++|+|.|||+++|++ .|+|++|+.|||+++|.+ .+|..||++|+++|
T Consensus 326 ~~~~~~~al~~aT~~gA~~lg~~--~G~l~~G~~ADlvvld~~~~~~~p~~~~~~~~v~~~~~~~v~~v~v~G~~v~ 400 (430)
T PRK06038 326 TALPARQVLEMATVNGAKALGIN--TGMLKEGYLADIIIVDMNKPHLTPVRDVPSHLVYSASGSDVDTTIVDGRILM 400 (430)
T ss_pred CcCCHHHHHHHHhHHHHHHhCCC--CCccCCCcccCEEEEeCCCCccCCCCChHHheeEeCCCCceeEEEECCEEEE
Confidence 36899999999999999999995 599999999999999964 26999999999986
No 86
>TIGR03314 Se_ssnA putative selenium metabolism protein SsnA. Members of this protein family are found exclusively in genomes that contain putative set of labile selenium-dependent enzyme accessory proteins as well as homologs of a labile selenium-dependent purine hydroxylase. A mutant in this gene in Escherichia coli had improved stationary phase viability. The function is unknown.
Probab=99.70 E-value=2.9e-16 Score=159.15 Aligned_cols=54 Identities=22% Similarity=0.255 Sum_probs=46.6
Q ss_pred CHHHHHHHHhHHHHHHcC--CCCCccccccCCCccEEEEcCC--------------------CceeEEEECCEEec
Q psy12256 363 SLVHALEVASLHPAKALG--LEQHKGTLDFGADADFVILDEG--------------------LHVYSTWIAGDLKL 416 (417)
Q Consensus 363 ~~~~~l~~~t~~pA~~l~--l~~~~G~l~~G~~ADlvv~d~~--------------------~~v~~v~~~G~~v~ 416 (417)
.+.++++|+|.++|++++ +..+.|+|++|+.|||+++|.+ .+|..||++|++++
T Consensus 338 ~~~~~~~~aT~~ga~al~~~l~~~~G~Le~G~~ADlvv~d~~~~~~~~~~~~~~~lv~~~~~~~V~~v~V~G~~v~ 413 (441)
T TIGR03314 338 AWPESPAMLFENNNEIAERNFGAKFGRLEPGAKADLIIVDYNAPTPLTADNINGHILFGMNGGSVDSTMVNGKVVM 413 (441)
T ss_pred cHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcccEEEEcCCCCeeechhhccccceecCCCCeeEEEEECCEEEE
Confidence 467899999999999986 4445899999999999999953 46899999999986
No 87
>TIGR02022 hutF formiminoglutamate deiminase. In some species, histidine utilization goes via urocanate to glutamate in four step, the last being removal of formamide. This model describes an alternate fourth step, formiminoglutamate hydrolase, which leads to N-formyl-L-glutamate. This product may be acted on by formylglutamate amidohydrolase (TIGR02017) and bypass glutamate as a product during its degradation. Alternatively, removal of formate (by EC 3.5.1.68) would yield glutamate.
Probab=99.70 E-value=9.4e-16 Score=156.04 Aligned_cols=54 Identities=35% Similarity=0.477 Sum_probs=47.8
Q ss_pred CCCHHHHHHHHhHHHHHHcCCCCCccccccCCCccEEEEcCC----------------------CceeEEEECCEEec
Q psy12256 361 RCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILDEG----------------------LHVYSTWIAGDLKL 416 (417)
Q Consensus 361 ~~~~~~~l~~~t~~pA~~l~l~~~~G~l~~G~~ADlvv~d~~----------------------~~v~~v~~~G~~v~ 416 (417)
.+++.++++|+|.|+|+++|+ + .|+|++||.||||++|.+ .+|..||++|++++
T Consensus 356 ~~~~~~~l~~aT~~gAralg~-~-~GsLe~Gk~ADlvvld~~~~~~~~~~~~~~~~~lv~~~~~~~V~~v~V~G~~v~ 431 (455)
T TIGR02022 356 PSVGRALYDAALLGGAQALGL-A-TGGLRAGARADFLTLDGDHPYLAGALGDSLLDRWLFAGGGAAVRDVWVGGRWVV 431 (455)
T ss_pred cchHHHHHHHHHHHHHHHhCC-C-CCccCCCCCcCEEEEeCCCcccCCCCchhHHHHHhhcCCCCCccEEEECCEEEE
Confidence 456788999999999999999 4 899999999999999943 35889999999986
No 88
>PRK08393 N-ethylammeline chlorohydrolase; Provisional
Probab=99.70 E-value=6.3e-16 Score=156.13 Aligned_cols=53 Identities=28% Similarity=0.396 Sum_probs=48.0
Q ss_pred CCHHHHHHHHhHHHHHHcCCCCCccccccCCCccEEEEcCC--------------------CceeEEEECCEEec
Q psy12256 362 CSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILDEG--------------------LHVYSTWIAGDLKL 416 (417)
Q Consensus 362 ~~~~~~l~~~t~~pA~~l~l~~~~G~l~~G~~ADlvv~d~~--------------------~~v~~v~~~G~~v~ 416 (417)
+++.++++++|.|||+++|++ .|+|++|+.||||++|.+ .+|..||++|+++|
T Consensus 327 ~~~~~al~~aT~~~A~~lg~~--~G~l~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~ 399 (424)
T PRK08393 327 ADAETVFRMATQNGAKALGLK--AGVIKEGYLADIAVIDFNRPHLRPINNPISHLVYSANGNDVETTIVDGKIVM 399 (424)
T ss_pred CCHHHHHHHHHHHHHHHhCCC--CCccCCCCccCEEEEeCCCCCcCCCCChHHHeeeeCCCCCeeEEEECCEEEE
Confidence 578999999999999999995 599999999999999853 37999999999986
No 89
>cd01306 PhnM PhnM is believed to be a subunit of the membrane associated C-P lyase complex. C-P lyase is thought to catalyze the direct cleavage of inactivated C-P bonds to yield inorganic phosphate and the corresponding hydrocarbons. It is responsible for cleavage of alkylphosphonates, which are utilized as sole phosphorus sources by many bacteria.
Probab=99.69 E-value=7.4e-15 Score=141.59 Aligned_cols=61 Identities=28% Similarity=0.453 Sum_probs=52.8
Q ss_pred HHHHHhhhccCCCHHHHHHHHhHHHHHHcCCCCCccccccCCCccEEEEcCCC---ceeEEEECC
Q psy12256 351 GCVQFFMRSTRCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILDEGL---HVYSTWIAG 412 (417)
Q Consensus 351 ~~~~~~~~~~~~~~~~~l~~~t~~pA~~l~l~~~~G~l~~G~~ADlvv~d~~~---~v~~v~~~G 412 (417)
..+..+....++++.++++++|.|||+++|+++ +|+|++|+.||||++|.+. .|..||++|
T Consensus 262 ~~~~~la~~~gl~l~eAl~~aT~nPA~~lGl~d-~G~I~~G~~ADlvvvd~~~~~p~v~~v~~~G 325 (325)
T cd01306 262 HAAFRLADLGGWSLPEAVALVSANPARAVGLTD-RGSIAPGKRADLILVDDMDGVPVVRTVWRGG 325 (325)
T ss_pred HHHHHHHHHcCCCHHHHHHHHhHHHHHHcCCCC-CCCcCCCCCCCEEEEeCCCCCCccceEEeCc
Confidence 334445556789999999999999999999985 7999999999999999864 799999987
No 90
>COG1820 NagA N-acetylglucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism]
Probab=99.69 E-value=2e-16 Score=151.94 Aligned_cols=186 Identities=29% Similarity=0.437 Sum_probs=131.0
Q ss_pred HHHHHHHH---HhCCCCCE-EEEEecCCC-CChHHHHHHHHHCCCeeeec-CCcCCHHHHHHHHHCCCCeEeeCCCCc--
Q psy12256 115 KGFDSVRE---VYGNLSNI-AIITLAPEL-AGSMEVIDKLVEQGITVSLG-HSSADINIAEEAVRHGASLITHLFNAM-- 186 (417)
Q Consensus 115 ~~~~~~~~---~~g~~~~i-k~~~~~pe~-~~~~~~i~~~~~~gi~v~~G-H~~~~~~~~~~a~~~G~~~i~Hl~~~~-- 186 (417)
+.++.+.+ +.|.+.++ ..||..+|. ..+.+.++++.+++....+| |.+-.|-... +.|+...+++.-.-
T Consensus 74 ~~l~~i~~~~~~~GtTsfLpT~iT~~~e~i~~al~~~~e~~~~~ga~ilGiHLEGP~ls~~---kkGAh~~~~ir~~~~~ 150 (380)
T COG1820 74 ETLETMAEAHLRHGTTSFLPTLITASLEKIKAALRAIREAIAKGGAQILGIHLEGPFLSPE---KKGAHNPEYIRPPDPE 150 (380)
T ss_pred HHHHHHHHHhhhcCeeeeeeecccCCHHHHHHHHHHHHHHHhccCCceEEEEeecCccCHh---hccCCCHHHhCCCCHH
Confidence 33544444 45655555 566666664 44556666666543322245 8873333322 24775555543211
Q ss_pred --ccccccCCceE--EeecCCCCCCCceEEEEecCCCcCCHHHHHHHHhh---CCCCCCCCCHHHHHHHHHccceeeecc
Q psy12256 187 --LPFHHRDPGII--GLLSSDNIDSSKVYYGIIADGVHTHPSALRIANST---HPEGHSSADIHIAEEAVRHGASLITHL 259 (417)
Q Consensus 187 --~~~~~r~~g~~--~~~~~~~l~~~~~~~~~i~dg~h~~~~~~~~~~~~---~~~~h~~~~~e~~~~a~~~g~~~~td~ 259 (417)
..+.+...|.+ .++++|... +++.++...+. .++|||++++|++.+|+++|++.+||+
T Consensus 151 ~~~~~~~~a~g~i~~vTlAPE~~~---------------~~e~i~~l~~~giivs~GHS~Atye~~~~a~~~Ga~~~THl 215 (380)
T COG1820 151 ELEQLIAAADGLIKLVTLAPELDG---------------TKELIRLLANAGIVVSIGHSNATYEQARAAFEAGATFVTHL 215 (380)
T ss_pred HHHHHHhhccCceEEEEECCCCCC---------------CHHHHHHHHhCCeEEEecCccccHHHHHHHHHhCccEEEee
Confidence 12223334333 456665321 25777776663 489999999999999999999999999
Q ss_pred ccccCCCCCCCCccccccccccccCCcceeeeeCCceeeChHHHHHHHhcC-CCCeEEeeCCee
Q psy12256 260 FNAMLPFHHRDPGIIGLLSSDNIDSSKVYYGIIADGVHTHPSALRIANSTH-PEGSITPFNGCV 322 (417)
Q Consensus 260 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~i~dg~~~~~~~l~~~~~~~-~~~~~~~~d~~~ 322 (417)
||+|+|++||+||++|. .+.+++.|+|+|+||+|+.+.+++++++.. ++++++++|.+.
T Consensus 216 fNaMs~l~hREPGvvGA----~L~~~~~~~eiIaDG~HVhP~~~~ia~~~kg~~~i~LVTDam~ 275 (380)
T COG1820 216 FNAMSGLHHREPGVVGA----ALDNPDVYAEIIADGVHVHPAAIRLALKAKGGDKIVLVTDAMA 275 (380)
T ss_pred ccCCCCCCCCCCcccce----eecCCCeEEEEEccCcccCHHHHHHHHhccCCceEEEEEcccc
Confidence 99999999999999999 677889999999999999999999999987 899999999876
No 91
>PRK07572 cytosine deaminase; Validated
Probab=99.68 E-value=2.1e-15 Score=152.42 Aligned_cols=69 Identities=19% Similarity=0.311 Sum_probs=52.2
Q ss_pred CchhHHHHHhhhccCCCH----HHHHHHHhHHHHHHcCCCCCccccccCCCccEEEEcC-C--------CceeEEEECCE
Q psy12256 347 TPFNGCVQFFMRSTRCSL----VHALEVASLHPAKALGLEQHKGTLDFGADADFVILDE-G--------LHVYSTWIAGD 413 (417)
Q Consensus 347 ~~l~~~~~~~~~~~~~~~----~~~l~~~t~~pA~~l~l~~~~G~l~~G~~ADlvv~d~-~--------~~v~~v~~~G~ 413 (417)
.++.+.++......++++ .++++++|.|||++||+++ .| |++|+.||||++|. + .++..||++|+
T Consensus 321 ~~~~e~~~~~~~~~~~~~~~~l~~~l~~aT~~~A~~lgl~~-~g-i~~G~~ADlvl~d~~~p~e~i~~~~~~~~V~~~G~ 398 (426)
T PRK07572 321 GDMLEVAHMGLHVAQMTGQDAMRACFDAVTVNPARIMGLEG-YG-LEPGCNADLVLLQARDPIEAIRLRAARLAVIRRGK 398 (426)
T ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcchHHhhCCCC-cC-CCCCCcCCEEEEeCCCHHHHHHhcCCceEEEECCE
Confidence 345555444333334543 4556799999999999987 67 99999999999994 4 46889999999
Q ss_pred EecC
Q psy12256 414 LKLT 417 (417)
Q Consensus 414 ~v~~ 417 (417)
+++.
T Consensus 399 ~v~~ 402 (426)
T PRK07572 399 VIAR 402 (426)
T ss_pred EEec
Confidence 9863
No 92
>PF01979 Amidohydro_1: Amidohydrolase family; InterPro: IPR006680 This group of enzymes represents a large metal dependent hydrolase superfamily []. The family includes adenine deaminase (3.5.4.2 from EC) that hydrolyses adenine to form hypoxanthine and ammonia. The adenine deaminase reaction is important for adenine utilization as a purine and also as a nitrogen source []. This family also includes dihydroorotase and N-acetylglucosamine-6-phosphate deacetylases (3.5.1.25 from EC). These enzymes catalyse the reaction: N-acetyl-D-glucosamine 6-phosphate + H2O = D-glucosamine 6-phosphate + acetateThis family includes dihydroorotase and urease which belong to MEROPS peptidase family M38 (beta-aspartyl dipeptidase, clan MJ), where they are classified as non-peptidase homologs. ; GO: 0016787 hydrolase activity; PDB: 1O12_A 2KAU_C 1FWD_C 1A5M_C 1FWC_C 1FWI_C 1EJV_C 1FWH_C 1A5L_C 1KRA_C ....
Probab=99.66 E-value=1.8e-17 Score=161.60 Aligned_cols=49 Identities=43% Similarity=0.716 Sum_probs=42.9
Q ss_pred HHHHHhhhccCCCHHHHHHHHhHHHHHHcCCCCCccccccCCCccEEEEc
Q psy12256 351 GCVQFFMRSTRCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILD 400 (417)
Q Consensus 351 ~~~~~~~~~~~~~~~~~l~~~t~~pA~~l~l~~~~G~l~~G~~ADlvv~d 400 (417)
+.++.+++. ++++.++++|+|.|||++||+++++|+|++||+|||||+|
T Consensus 285 ~~l~~~~~~-~~~~~~~l~~aT~n~Ak~lg~~~~~G~i~~G~~ADlvv~D 333 (333)
T PF01979_consen 285 EELKLFVRL-GISPEEALKMATINPAKILGLDDDKGSIEPGKDADLVVLD 333 (333)
T ss_dssp HHHHHHHHH-HSHHHHHHHHHTHHHHHHTTSTTTSSSSSTTSB--EEEEE
T ss_pred ccccccccc-cccccccccccchhHHHHcCCCCCEEEeCcCCCcCEEEeC
Confidence 677777765 5999999999999999999998779999999999999997
No 93
>cd01304 FMDH_A Formylmethanofuran dehydrogenase (FMDH) subunit A; Methanogenic bacteria and archea derive the energy for autotrophic growth from methanogenesis, the reduction of CO2 with molecular hydrogen as the electron donor. FMDH catalyzes the first step in methanogenesis, the formyl-methanofuran synthesis. In this step, CO2 is bound to methanofuran and subsequently reduced to the formyl state with electrons derived from hydrogen.
Probab=99.66 E-value=1.9e-14 Score=145.07 Aligned_cols=55 Identities=35% Similarity=0.477 Sum_probs=49.8
Q ss_pred CCCHHHHHHHHhHHHHHHcCCCCCccccccCCCccEEEEcCC----------------CceeEEEECCEEec
Q psy12256 361 RCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILDEG----------------LHVYSTWIAGDLKL 416 (417)
Q Consensus 361 ~~~~~~~l~~~t~~pA~~l~l~~~~G~l~~G~~ADlvv~d~~----------------~~v~~v~~~G~~v~ 416 (417)
.+|++++++++|.|||++||+++ +|.|++|+.|||+|+|.+ .+|..||++|++++
T Consensus 426 eLSLeei~~mtT~nPAKiLGL~~-kG~L~~G~~ADLvIfD~n~~~v~~~dl~s~~~~~gkV~~Tiv~GkvVv 496 (541)
T cd01304 426 EYSLYEIAIMTRAGPAKLLGLSD-KGHLGVGADADIAIYDDDPDQVDPSDYEKVEKAFSRAAYVLKDGEIVV 496 (541)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCC-CCccCCCCcCCEEEEeCCcCccCchhhcCceeecCcEEEEEECCEEEE
Confidence 46999999999999999999974 799999999999999954 37889999999986
No 94
>cd01316 CAD_DHOase The eukaryotic CAD protein is a trifunctional enzyme of carbamoylphosphate synthetase-aspartate transcarbamoylase-dihydroorotase, which catalyzes the first three steps of de novo pyrimidine nucleotide biosynthesis. Dihydroorotase (DHOase) catalyzes the third step, the reversible interconversion of carbamoyl aspartate to dihydroorotate.
Probab=99.65 E-value=6.9e-15 Score=143.72 Aligned_cols=69 Identities=13% Similarity=0.158 Sum_probs=55.1
Q ss_pred CCCCCCCCCchhHHHHHhhhccCCCHHHHHHHHhHHHHHHcCCCCCccccccCCCccEEEEcCC----------------
Q psy12256 339 NCNNGGSITPFNGCVQFFMRSTRCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILDEG---------------- 402 (417)
Q Consensus 339 ~~~~~g~~~~l~~~~~~~~~~~~~~~~~~l~~~t~~pA~~l~l~~~~G~l~~G~~ADlvv~d~~---------------- 402 (417)
..+++|....+...+. +++.+++++.++++++|.|||++||++.. .+||+++|++
T Consensus 239 ~~G~~g~e~~lpl~~~-~v~~~~i~l~~l~~~~s~nPAk~~gl~~~--------~~~lvi~d~~~~~~v~~~~~~s~~~~ 309 (344)
T cd01316 239 PPGFPGVETSLPLLLT-AVHEGRLTIEDIVDRLHTNPKRIFNLPPQ--------SDTYVEVDLDEEWTIPKNPLQSKKGW 309 (344)
T ss_pred CCCcccHHHHHHHHHH-HHHcCCCCHHHHHHHHHHhHHHHhCCCCC--------CCCEEEEeCCCcEEEChhhccccCCC
Confidence 3456666666666665 67777899999999999999999999642 3379999964
Q ss_pred ---------CceeEEEECCEEec
Q psy12256 403 ---------LHVYSTWIAGDLKL 416 (417)
Q Consensus 403 ---------~~v~~v~~~G~~v~ 416 (417)
++|..|+++|+++|
T Consensus 310 sp~~G~~l~G~v~~ti~rG~~v~ 332 (344)
T cd01316 310 TPFEGKKVKGKVQRVVLRGETAF 332 (344)
T ss_pred CCCCCCEEeeEEEEEEECCEEEE
Confidence 58999999999987
No 95
>PRK13309 ureC urease subunit alpha; Reviewed
Probab=99.65 E-value=5.5e-14 Score=143.33 Aligned_cols=57 Identities=16% Similarity=0.283 Sum_probs=52.5
Q ss_pred CCCHHHHHHHHhHHHHHHcCCCCCccccccCCCccEEEEcCC---CceeEEEECCEEecC
Q psy12256 361 RCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILDEG---LHVYSTWIAGDLKLT 417 (417)
Q Consensus 361 ~~~~~~~l~~~t~~pA~~l~l~~~~G~l~~G~~ADlvv~d~~---~~v~~v~~~G~~v~~ 417 (417)
.+++.++|++.|.|||+++++++++|+|++||.|||+|+|++ .++..||++|+++|.
T Consensus 402 ~~~v~~aL~~yT~n~A~a~g~e~~~GsLe~Gk~ADlvvld~d~f~~~~~~vi~~G~iv~~ 461 (572)
T PRK13309 402 NFRVLRYVAKITINPAITQGVSHVIGSVEVGKMADLVLWEPRFFGAKPKMVIKGGMINWA 461 (572)
T ss_pred cccHHHHHHHHhHHHHHHcCcccCccccCCCCcCCEEEEchhhcCCCccEEEECCEEEEe
Confidence 467888999999999999999988999999999999999987 578999999999983
No 96
>PRK07583 cytosine deaminase-like protein; Validated
Probab=99.63 E-value=1.5e-14 Score=146.56 Aligned_cols=55 Identities=22% Similarity=0.218 Sum_probs=50.0
Q ss_pred CCCHHHHHHHHhHHHHHHcCCCCCccccccCCCccEEEEcCC---------CceeEEEECCEEec
Q psy12256 361 RCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILDEG---------LHVYSTWIAGDLKL 416 (417)
Q Consensus 361 ~~~~~~~l~~~t~~pA~~l~l~~~~G~l~~G~~ADlvv~d~~---------~~v~~v~~~G~~v~ 416 (417)
+.++.++++++|.|||+++|+++ +|+|++|+.|||+++|.+ ..+..||++|++++
T Consensus 359 ~~~~~~al~~~T~~~A~~lg~~~-~G~i~~G~~ADlvv~d~~~~~~~~~~~~~~~~V~~~G~~v~ 422 (438)
T PRK07583 359 DHPYDDWPAAVTTTPADIMGLPD-LGRIAVGAPADLVLFKARSFSELLSRPQSDRIVLRAGKPID 422 (438)
T ss_pred CCcHHHHHHHHhHHHHHHcCCCC-CCCcCCCCCCCEEEEcCCCHHHHHhcCCCccEEEECCEEec
Confidence 67899999999999999999986 899999999999999976 35778999999875
No 97
>cd01309 Met_dep_hydrolase_C Metallo-dependent hydrolases, subgroup C is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=99.63 E-value=2.4e-14 Score=141.32 Aligned_cols=67 Identities=30% Similarity=0.418 Sum_probs=57.8
Q ss_pred hhHHHHHhhhccCCCHHHHHHHHhHHHHHHcCCCCCccccccCCCccEEEEcCC-----CceeEEEECCEEec
Q psy12256 349 FNGCVQFFMRSTRCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILDEG-----LHVYSTWIAGDLKL 416 (417)
Q Consensus 349 l~~~~~~~~~~~~~~~~~~l~~~t~~pA~~l~l~~~~G~l~~G~~ADlvv~d~~-----~~v~~v~~~G~~v~ 416 (417)
+...+..++. .++++.++++++|.|||+++|+++++|+|++|+.|||+++|.+ .+|..||++|+++|
T Consensus 288 l~~~~~~a~~-~gl~~~~al~~~T~n~A~~lg~~~~~G~l~~G~~ADlvv~d~dpl~~~~~v~~v~i~G~~v~ 359 (359)
T cd01309 288 LNLEAAKAVK-YGLSYEEALKAITINPAKILGIEDRVGSLEPGKDADLVVWNGDPLEPTSKPEQVYIDGRLVY 359 (359)
T ss_pred HHHHHHHHHH-cCCCHHHHHHHHHHHHHHHhCCCCCcccCCCCCccCEEEECCCcccccCcccEEEECCEEeC
Confidence 3343444444 5899999999999999999999887899999999999999976 47999999999987
No 98
>COG0402 SsnA Cytosine deaminase and related metal-dependent hydrolases [Nucleotide transport and metabolism / General function prediction only]
Probab=99.61 E-value=1e-14 Score=147.20 Aligned_cols=49 Identities=43% Similarity=0.653 Sum_probs=44.5
Q ss_pred HHHHHhHHHHHHcCCCCCccccccCCCccEEEEcCC-------------------CceeEEEECCEEec
Q psy12256 367 ALEVASLHPAKALGLEQHKGTLDFGADADFVILDEG-------------------LHVYSTWIAGDLKL 416 (417)
Q Consensus 367 ~l~~~t~~pA~~l~l~~~~G~l~~G~~ADlvv~d~~-------------------~~v~~v~~~G~~v~ 416 (417)
+++|+|.|+|++||+ .+.|+|++|+.|||+++|.+ ..|..|+++|+.++
T Consensus 341 ~l~~aT~~gA~alg~-~~~G~le~G~~ADlvvld~~~~~~~~~~~~~~~v~~~~~~~v~~v~~~g~~v~ 408 (421)
T COG0402 341 ALDMATLGGAKALGL-DDIGSLEVGKKADLVVLDASAPHLAPLRPVSRLVFAAGGKDVDRVLVDGRLVM 408 (421)
T ss_pred HHHHHHhhHHHHcCC-cccCCcccccccCEEEEcCCCCccccccHHHHHHHhcCCCceeEEEECCEEEE
Confidence 899999999999998 45999999999999999965 37999999999875
No 99
>PRK09230 cytosine deaminase; Provisional
Probab=99.61 E-value=7.5e-14 Score=140.81 Aligned_cols=52 Identities=23% Similarity=0.418 Sum_probs=46.9
Q ss_pred HHHHHHHHhHHHHHHcCCCCCccccccCCCccEEEEcCC---------CceeEEEECCEEecC
Q psy12256 364 LVHALEVASLHPAKALGLEQHKGTLDFGADADFVILDEG---------LHVYSTWIAGDLKLT 417 (417)
Q Consensus 364 ~~~~l~~~t~~pA~~l~l~~~~G~l~~G~~ADlvv~d~~---------~~v~~v~~~G~~v~~ 417 (417)
+.++++|+|.|||++||+++ .| |++|+.||||++|.+ ..+..|+++|++|+.
T Consensus 346 ~~~~l~maT~~gA~alg~~~-~g-le~G~~ADlv~~~~~~~~~~~~~~~~~~~v~~~G~~v~~ 406 (426)
T PRK09230 346 INDGLNLITTHSARTLNLQD-YG-IEVGNPANLIILPAENGFDAVRRQVPVRYSIRHGKVIAE 406 (426)
T ss_pred HHHHHHHHhcchhHHhCCCC-cC-CCCCCcCCEEEEeCCCHHHHHhccCCceEEEECCEEEec
Confidence 68999999999999999986 78 999999999999963 468999999999873
No 100
>PRK05985 cytosine deaminase; Provisional
Probab=99.60 E-value=2.8e-13 Score=135.50 Aligned_cols=53 Identities=34% Similarity=0.394 Sum_probs=45.9
Q ss_pred CHHHHHHHHhHHHHHHcCCCCCccccccCCCccEEEEcCC---------CceeEEEECCEEecC
Q psy12256 363 SLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILDEG---------LHVYSTWIAGDLKLT 417 (417)
Q Consensus 363 ~~~~~l~~~t~~pA~~l~l~~~~G~l~~G~~ADlvv~d~~---------~~v~~v~~~G~~v~~ 417 (417)
++.++++|+|.|+|+++|+++ . .|++|+.||||++|.+ ..+..||++|++||.
T Consensus 328 ~~~~al~~~T~~~A~~lg~~~-~-~l~~G~~ADlvvld~~~~~~~~~~~~~~~~v~~~G~~v~~ 389 (391)
T PRK05985 328 ELAAALDCVTHGGARALGLED-Y-GLAVGARADFVLVDAETVAEAVVAVPVRRLVVRGGRIVAR 389 (391)
T ss_pred HHHHHHHHHcchhHHHhCCcc-c-CCCCCCcCCEEEECCCCHHHHHhhCCcceEEEECCEEEec
Confidence 456899999999999999975 3 5999999999999976 346779999999974
No 101
>PF13147 Amidohydro_4: Amidohydrolase; PDB: 3SFW_B 2FTW_A 2PUZ_B 2GOK_B 3HM7_E 3D6N_A 1XRT_A 1XRF_A 1YNY_B 1K1D_F ....
Probab=99.59 E-value=6.4e-16 Score=147.19 Aligned_cols=53 Identities=36% Similarity=0.531 Sum_probs=44.3
Q ss_pred CCCCchhHHHHHhhhccCCCHHHHHHHHhHHHHHHcCCCCCccccccCCCccEE
Q psy12256 344 GSITPFNGCVQFFMRSTRCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFV 397 (417)
Q Consensus 344 g~~~~l~~~~~~~~~~~~~~~~~~l~~~t~~pA~~l~l~~~~G~l~~G~~ADlv 397 (417)
++...+...+..+++ .|++++++++++|.|||++||+++++|+|++|++||||
T Consensus 252 ~~~~~~~~~~~~~~~-~gl~~~~al~~~T~~pA~~lgl~~~~G~i~~G~~ADlv 304 (304)
T PF13147_consen 252 GSGDLLHEAMRLAVR-AGLSPEEALRAATSNPARILGLDDDKGSIAPGKDADLV 304 (304)
T ss_dssp CTTTHHHHHHHHHHH-TSSTHHHHHHHHTHHHHHHTTBTTTSSSTSTTSB-EEE
T ss_pred cccccchhhhhHHhh-cCCCHHHHHHHHHHHHHHHhCCCCCCccCCCCCCCCcC
Confidence 444556666666665 69999999999999999999997679999999999997
No 102
>KOG3968|consensus
Probab=99.58 E-value=2.2e-14 Score=137.42 Aligned_cols=58 Identities=31% Similarity=0.465 Sum_probs=53.7
Q ss_pred cCCCHHHHHHHHhHHHHHHcCCCCCccccccCCCccEEEEcCC-------------------------CceeEEEECCEE
Q psy12256 360 TRCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILDEG-------------------------LHVYSTWIAGDL 414 (417)
Q Consensus 360 ~~~~~~~~l~~~t~~pA~~l~l~~~~G~l~~G~~ADlvv~d~~-------------------------~~v~~v~~~G~~ 414 (417)
.++|+++++.+||.|+|++||+.+..|++++||.+|++++|.+ .+|..||++||.
T Consensus 356 ~~Ls~~e~L~lATi~GA~aLg~d~~~Gs~eVGK~fDai~id~s~~~~~l~~~~~~~~lI~~~v~~g~drni~~V~V~Gk~ 435 (439)
T KOG3968|consen 356 MKLSMEEALYLATIGGAKALGRDDTHGSLEVGKYFDAIIIDLSAPESPLYRFSGHHDLISKVVYNGDDRNIAEVFVAGKL 435 (439)
T ss_pred ccCCHHHHHHHHhccchhhccCCCcccceecccccceEEEeCCCCcchhhhccchHHHHHHHHhcCCCCceEEEEEccEE
Confidence 5799999999999999999999988999999999999999964 489999999999
Q ss_pred ecC
Q psy12256 415 KLT 417 (417)
Q Consensus 415 v~~ 417 (417)
++.
T Consensus 436 v~~ 438 (439)
T KOG3968|consen 436 VKQ 438 (439)
T ss_pred ecc
Confidence 863
No 103
>PRK06846 putative deaminase; Validated
Probab=99.51 E-value=9.9e-13 Score=132.31 Aligned_cols=70 Identities=20% Similarity=0.177 Sum_probs=53.1
Q ss_pred CchhHHHHHhhhccCC----CHHHHHHHHhHHHHHHcCCCCCccccccCCCccEEEEcCC---------CceeEEEECCE
Q psy12256 347 TPFNGCVQFFMRSTRC----SLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILDEG---------LHVYSTWIAGD 413 (417)
Q Consensus 347 ~~l~~~~~~~~~~~~~----~~~~~l~~~t~~pA~~l~l~~~~G~l~~G~~ADlvv~d~~---------~~v~~v~~~G~ 413 (417)
.+|.+.++.+....++ ++.++++|+|.++ +.+++++.+|+|+||+.|||+++|.+ ..+..||++|+
T Consensus 323 ~d~~~~~~~~~~~~~~~~~~~~~~~l~~~T~~a-~~l~~~~~~G~l~~G~~ADlvlld~~~~~~~~~~~~~v~~v~~~G~ 401 (410)
T PRK06846 323 GDMLEKANLLAELYRWSDERSLSRSLALATGGV-LPLNDEGERVWPKVGDEASFVLVDASCSAEAVARQSPRTAVFHKGQ 401 (410)
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHcCCc-cccccCCCccCCCCCCcccEEEEeCCChHHHHHhcCCceEEEECCE
Confidence 3466666655432233 3457889999884 56887666899999999999999964 47999999999
Q ss_pred EecC
Q psy12256 414 LKLT 417 (417)
Q Consensus 414 ~v~~ 417 (417)
++|.
T Consensus 402 ~v~~ 405 (410)
T PRK06846 402 LVAG 405 (410)
T ss_pred EEee
Confidence 9873
No 104
>COG1574 Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=99.49 E-value=8.9e-13 Score=134.32 Aligned_cols=57 Identities=35% Similarity=0.387 Sum_probs=53.9
Q ss_pred CCCHHHHHHHHhHHHHHHcCCCCCccccccCCCccEEEEcCC-----------CceeEEEECCEEecC
Q psy12256 361 RCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILDEG-----------LHVYSTWIAGDLKLT 417 (417)
Q Consensus 361 ~~~~~~~l~~~t~~pA~~l~l~~~~G~l~~G~~ADlvv~d~~-----------~~v~~v~~~G~~v~~ 417 (417)
.+|++++|++.|.|+|.+.+.++.+|+|++|+.|||+|+|.| .+|..|+++||+||.
T Consensus 466 ~L~~~eAL~~yT~~~A~a~~~e~~~G~Le~G~~AD~~Vld~d~f~~~~~~i~~~~v~~T~~~Gk~VY~ 533 (535)
T COG1574 466 RLTREEALRAYTEGGAYASGAEGEKGSLEPGKLADFAVLDRDPFTVDPDSIKDTKVVLTIVAGKVVYR 533 (535)
T ss_pred ccCHHHHHHHHhhhhHHhhhccccccccccCceeeEEEecCCcccCChHHhccceEEEEEEcCeEeec
Confidence 599999999999999999999889999999999999999985 689999999999984
No 105
>PRK11170 nagA N-acetylglucosamine-6-phosphate deacetylase; Provisional
Probab=99.46 E-value=1.5e-13 Score=136.28 Aligned_cols=95 Identities=32% Similarity=0.491 Sum_probs=86.0
Q ss_pred HHHHHHHhh---CCCCCCCCCHHHHHHHHHccceeeeccccccCCCCCCCCccccccccccccCCcceeeeeCCceeeCh
Q psy12256 224 SALRIANST---HPEGHSSADIHIAEEAVRHGASLITHLFNAMLPFHHRDPGIIGLLSSDNIDSSKVYYGIIADGVHTHP 300 (417)
Q Consensus 224 ~~~~~~~~~---~~~~h~~~~~e~~~~a~~~g~~~~td~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~i~dg~~~~~ 300 (417)
+.++.+.+. .++|||++++|++++|+++|+..+||+||+|||++||+||+++. .+.++++++|+|+||+|+.+
T Consensus 179 ~~i~~l~~~gi~vs~GHs~A~~~~~~~a~~~Ga~~~THlfNaM~~~~hR~pg~vga----~l~~~~~~~elI~Dg~Hv~p 254 (382)
T PRK11170 179 EVIRKLVEAGIVVSAGHSNATYEEAKAGFRAGITFATHLYNAMPYITGREPGLVGA----ILDEPDVYCGIIADGLHVDY 254 (382)
T ss_pred HHHHHHHHCCcEEEeeCCcCCHHHHHHHHHcCCCEEeeccccCCcccCCCcchhhH----hhcCCCcEEEEEcCcccCCH
Confidence 566666553 48999999999999999999999999999999999999999998 56678999999999999999
Q ss_pred HHHHHHHhcCCCCeEEeeCCee
Q psy12256 301 SALRIANSTHPEGSITPFNGCV 322 (417)
Q Consensus 301 ~~l~~~~~~~~~~~~~~~d~~~ 322 (417)
.+++++++...++++++||...
T Consensus 255 ~~~~~~~~~k~~~~~lvtDa~~ 276 (382)
T PRK11170 255 ANIRNAKRLKGDKLCLVTDATA 276 (382)
T ss_pred HHHHHHHHhcCCcEEEEecccc
Confidence 9999999987788999999775
No 106
>TIGR00221 nagA N-acetylglucosamine-6-phosphate deacetylase.
Probab=99.43 E-value=2.5e-13 Score=134.31 Aligned_cols=95 Identities=37% Similarity=0.633 Sum_probs=86.2
Q ss_pred HHHHHHHhh---CCCCCCCCCHHHHHHHHHccceeeeccccccCCCCCCCCccccccccccccCCcceeeeeCCceeeCh
Q psy12256 224 SALRIANST---HPEGHSSADIHIAEEAVRHGASLITHLFNAMLPFHHRDPGIIGLLSSDNIDSSKVYYGIIADGVHTHP 300 (417)
Q Consensus 224 ~~~~~~~~~---~~~~h~~~~~e~~~~a~~~g~~~~td~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~i~dg~~~~~ 300 (417)
+.++.+.+. ++.|||++++|++.+|+++|+..+||+||+|||++||+||++++ .+.++++++|+|+||+|+.+
T Consensus 181 ~~i~~l~~~gi~vs~GHs~A~~~~~~~a~~~Ga~~~THlfNaM~~~~hR~pg~vga----~l~~~~~~~elI~Dg~Hv~p 256 (380)
T TIGR00221 181 ELIRHLKDAGIIVSAGHTNATYELAKAAFKAGATHATHLYNAMSPIHHREPGVIGA----VLDHDDVYTEIIADGIHIHP 256 (380)
T ss_pred HHHHHHHHCCeEEEeeCCCCCHHHHHHHHHcCCCeeeeeccCCCCcCCCCCcHHHH----HhcCCCcEEEEEcCCCcCCH
Confidence 667666653 48999999999999999999999999999999999999999998 56678999999999999999
Q ss_pred HHHHHHHhcC-CCCeEEeeCCee
Q psy12256 301 SALRIANSTH-PEGSITPFNGCV 322 (417)
Q Consensus 301 ~~l~~~~~~~-~~~~~~~~d~~~ 322 (417)
.+++++++.. +++++++||...
T Consensus 257 ~~~~~~~r~kg~~~~~lvtDa~~ 279 (380)
T TIGR00221 257 LNIRLAKKLKGDSKLCLVTDSMA 279 (380)
T ss_pred HHHHHHHHhcCCCcEEEEecccc
Confidence 9999999987 689999999775
No 107
>cd01300 YtcJ_like YtcJ_like metal dependent amidohydrolases. YtcJ is a Bacillus subtilis ORF of unknown function. The Arabidopsis homolog LAF3 has been identified as a factor required for photochrome A signalling.
Probab=99.19 E-value=1.2e-09 Score=112.31 Aligned_cols=39 Identities=44% Similarity=0.572 Sum_probs=36.7
Q ss_pred cCCCHHHHHHHHhHHHHHHcCCCCCccccccCCCccEEE
Q psy12256 360 TRCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVI 398 (417)
Q Consensus 360 ~~~~~~~~l~~~t~~pA~~l~l~~~~G~l~~G~~ADlvv 398 (417)
.++|+.++++++|.|||+++|+++++|+|++||.|||+|
T Consensus 441 ~~ls~~~al~~~T~~~A~~lg~e~~~GsLe~Gk~ADlvv 479 (479)
T cd01300 441 ERLSLEEALRAYTIGAAYAIGEEDEKGSLEPGKLADFVV 479 (479)
T ss_pred ccCCHHHHHHHHHHHHHHHhccccccccccCCcccceeC
Confidence 368999999999999999999988899999999999986
No 108
>KOG3892|consensus
Probab=99.15 E-value=3.8e-11 Score=108.66 Aligned_cols=101 Identities=53% Similarity=0.916 Sum_probs=90.9
Q ss_pred HHHHHHHHh---hCCCCCCCCCHHHHHHHHHccceeeeccccccCCCCCCCCccccccccccccCCc-ceeeeeCCceee
Q psy12256 223 PSALRIANS---THPEGHSSADIHIAEEAVRHGASLITHLFNAMLPFHHRDPGIIGLLSSDNIDSSK-VYYGIIADGVHT 298 (417)
Q Consensus 223 ~~~~~~~~~---~~~~~h~~~~~e~~~~a~~~g~~~~td~~~~~~~~~~r~~~~~~~~~~~~~~~~~-~~~~~i~dg~~~ 298 (417)
++.++.... .++.||+++.....+.|.-.|+.++||+||+|.|||||.||.+|++.|+.+..+. +|+++|.||+|.
T Consensus 195 ~evi~~lv~~gitVslGHS~A~L~~gE~AV~sGat~ITHLFNAMlpfHHRDPGlvGLLtSd~lp~gr~iyyGiIsDG~HT 274 (407)
T KOG3892|consen 195 QEVIRALVARGITVSLGHSVADLRAGEDAVWSGATFITHLFNAMLPFHHRDPGLVGLLTSDRLPAGRCIYYGIISDGTHT 274 (407)
T ss_pred HHHHHHHHhcceEEeeccchhccCcHHHHHhccchHHHHHHHhccccccCCCceeEEeecCCCCCCCeEEEEEecCCccC
Confidence 677765443 3589999999999999999999999999999999999999999998888887665 999999999999
Q ss_pred ChHHHHHHHhcCCCCeEEeeCCeee
Q psy12256 299 HPSALRIANSTHPEGSITPFNGCVQ 323 (417)
Q Consensus 299 ~~~~l~~~~~~~~~~~~~~~d~~~~ 323 (417)
.+..++++++..|...++++|....
T Consensus 275 hpaALRIAyrthpqGLvLVTDAI~A 299 (407)
T KOG3892|consen 275 HPAALRIAYRTHPQGLVLVTDAIPA 299 (407)
T ss_pred ChhHhhhhhhcCCCceEEEecchhh
Confidence 9999999999999999999998873
No 109
>COG3653 N-acyl-D-aspartate/D-glutamate deacylase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.05 E-value=5.4e-09 Score=100.53 Aligned_cols=53 Identities=26% Similarity=0.362 Sum_probs=43.8
Q ss_pred hhHHHHHhhhc----cCCCHHHHHHHHhHHHHHHcCCCCCccccccCCCccEEEEcCC
Q psy12256 349 FNGCVQFFMRS----TRCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILDEG 402 (417)
Q Consensus 349 l~~~~~~~~~~----~~~~~~~~l~~~t~~pA~~l~l~~~~G~l~~G~~ADlvv~d~~ 402 (417)
....+....++ .-++++.+++..|..+|+.+||.+ +|.+++|.+|||+|+|+.
T Consensus 457 ~~rvL~~~~rer~~gp~l~Le~av~rmT~~~Ae~~GL~d-rGlvreG~rADl~viDp~ 513 (579)
T COG3653 457 FPRVLKRYRRERRAGPLLSLERAVRRMTGELAEWFGLGD-RGLVREGDRADLVVIDPH 513 (579)
T ss_pred chHHHHHHHhhhccCCcccHHHHHHHHhccHHHHhCccc-ccccccccccceEEEccc
Confidence 34445444443 249999999999999999999986 899999999999999974
No 110
>PF13594 Amidohydro_5: Amidohydrolase; PDB: 4F0R_A 4F0S_A 1NFG_C 2FVM_A 2FVK_A 2FTY_D 1YBQ_B 1POJ_B 1ONW_A 2AQO_B ....
Probab=99.05 E-value=1.7e-10 Score=85.54 Aligned_cols=47 Identities=34% Similarity=0.355 Sum_probs=31.5
Q ss_pred CeEEeCCCCEeeccchhhcccCCCCCCCCCCCCCcHHHHHHHHHHHHhCCceee
Q psy12256 3 DFRFDCGGKLIAPGFIDIQINGGFGVDFSHDIDSVDKNVSIVARGILAHGVTSF 56 (417)
Q Consensus 3 ~~vID~~G~~v~PG~ID~H~H~~~g~~~~~~~~~~~~~~~~~~~~~~~~GvTt~ 56 (417)
.++||++|+||+|||||+|+|++....... ......+..+++|||||
T Consensus 22 ~~viD~~g~~v~PG~ID~H~H~~~~~~~~~-------~~~~~~~~~l~~GvTTV 68 (68)
T PF13594_consen 22 AEVIDAKGKYVMPGFIDMHTHLGEPGWQSL-------DPETEAAAALAGGVTTV 68 (68)
T ss_dssp CEEEEETTCEEEE-EEEEEE-TTTTCEGGC-------TCHHHHHHHHHTTEEEE
T ss_pred CEEEECCCCEEeCCeEeeeecccccccccc-------chhhHHHHHHCcceeeC
Confidence 578999999999999999999762111111 11334555679999996
No 111
>cd01294 DHOase Dihydroorotase (DHOase) catalyzes the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in the pyrimidine biosynthesis. In contrast to the large polyfunctional CAD proteins of higher organisms, this group of DHOases is monofunctional and mainly dimeric.
Probab=99.02 E-value=3.4e-09 Score=103.86 Aligned_cols=121 Identities=8% Similarity=0.046 Sum_probs=66.8
Q ss_pred eccchhhcccCCCCCCCCCCCCCcHHHHHHHHHHHHhCCceeeeeccCCCCHHHHHHHHH-HHHcCCCCCC-CceeEEee
Q psy12256 14 APGFIDIQINGGFGVDFSHDIDSVDKNVSIVARGILAHGVTSFCPTLVTSEPQVYKKVLS-RLRKTPGGKH-GATVLGAH 91 (417)
Q Consensus 14 ~PG~ID~H~H~~~g~~~~~~~~~~~~~~~~~~~~~~~~GvTt~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~G~~ 91 (417)
+||+||+|+|...+ +++.+.++++.++| |+++++.++.|..+....+. ...+..+. . ..++.+ +
T Consensus 3 ~Pg~iD~h~h~~~~-----------~~~~~~~~aa~~gG-Ttvv~mpnt~P~~~~~~~~~~~~~~~~~~-~~~~~~~~-~ 68 (335)
T cd01294 3 IPRPDDMHLHLRDG-----------AMLKLVLPYTARGF-SRAIVMPNLKPPVTTTADALAYRERILAA-DPGPNFTP-L 68 (335)
T ss_pred CCCcceeEecCCCc-----------hHHHHHHHHHHhCC-CEEEECCCCCCCCCCHHHHHHHHHHHHhc-CCCCcEEE-E
Confidence 79999999998531 46889999999999 99999987755422212121 12121110 1 112221 1
Q ss_pred eeCCCCCCCCCCCCCCcccCCCcHHHHHHHHHhCCCCCEEEEEe----cCCC-----CChHHHHHHHHHCCCeeeecCCc
Q psy12256 92 VEGPFISPDKKGAHSLSKIVTFDKGFDSVREVYGNLSNIAIITL----APEL-----AGSMEVIDKLVEQGITVSLGHSS 162 (417)
Q Consensus 92 leGp~~~~~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~ik~~~~----~pe~-----~~~~~~i~~~~~~gi~v~~GH~~ 162 (417)
..- +... +. ..++++++.+..|-. .+|+.+- .+.. ....++++.+.+.|+.+.+ |++
T Consensus 69 ~~i-~~~~---~~--------~~~el~~~~~~~G~~-g~Klf~~~~~~~~~~~~~d~~~l~~~~e~~~~~g~~V~v-HaE 134 (335)
T cd01294 69 MTL-YLTE---NT--------TPEELREAKKKGGIR-GVKLYPAGATTNSQGGVTDLEKIYPVLEAMQKLGMPLLV-HGE 134 (335)
T ss_pred EEE-eccC---CC--------CHHHHHHHHHhCCce-EEEEecCCCccCCCCCcCCHHHHHHHHHHHHHcCCeEEE-ecC
Confidence 110 0000 00 014566665543422 3676531 1111 2346888889999999988 876
No 112
>cd00854 NagA N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate. This is the first committed step in the biosynthetic pathway to amino-sugar-nucleotides, which is needed for cell wall peptidoglycan and teichoic acid biosynthesis. Deacetylation of N-acetylglucosamine is also important in lipopolysaccharide synthesis and cell wall recycling.
Probab=98.77 E-value=2.1e-08 Score=99.77 Aligned_cols=95 Identities=37% Similarity=0.636 Sum_probs=84.5
Q ss_pred HHHHHHHhh---CCCCCCCCCHHHHHHHHHccceeeeccccccCCCCCCCCccccccccccccCCcceeeeeCCceeeCh
Q psy12256 224 SALRIANST---HPEGHSSADIHIAEEAVRHGASLITHLFNAMLPFHHRDPGIIGLLSSDNIDSSKVYYGIIADGVHTHP 300 (417)
Q Consensus 224 ~~~~~~~~~---~~~~h~~~~~e~~~~a~~~g~~~~td~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~i~dg~~~~~ 300 (417)
+.++.+.+. .+.||+.++++++.+|+++|+..+||++|+|++++||+|+.++. .++++++++++|.||.|+.+
T Consensus 176 ~~i~~~~~~gi~v~~GH~~a~~~~~~~a~~~G~~~~tH~~n~m~~~~~r~~~~~~a----~l~~~~~~~~li~dg~Hv~~ 251 (374)
T cd00854 176 ELIRYLVERGIIVSIGHSDATYEQAVAAFEAGATHVTHLFNAMSPLHHREPGVVGA----ALSDDDVYAELIADGIHVHP 251 (374)
T ss_pred HHHHHHHHCCeEEEeeCCcCCHHHHHHHHHcCCCeeeECCCCCCCcCCCCCcHHHH----hhcCCCCeEEEEcCCCcCCH
Confidence 566666664 36799999999999999999999999999999999999999988 56678899999999999999
Q ss_pred HHHHHHHhcC-CCCeEEeeCCee
Q psy12256 301 SALRIANSTH-PEGSITPFNGCV 322 (417)
Q Consensus 301 ~~l~~~~~~~-~~~~~~~~d~~~ 322 (417)
..++++.+.. ++++++++|...
T Consensus 252 ~~~~~~~r~~g~~~~~lvtD~~~ 274 (374)
T cd00854 252 AAVRLAYRAKGADKIVLVTDAMA 274 (374)
T ss_pred HHHHHHHHhcCCCcEEEEecccc
Confidence 9999999986 599999999764
No 113
>cd01305 archeal_chlorohydrolases Predicted chlorohydrolases. These metallo-dependent hydrolases from archea are part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. They have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. Some members of this subgroup are predicted to be chlorohyrolases.
Probab=98.69 E-value=6e-07 Score=84.89 Aligned_cols=32 Identities=19% Similarity=0.291 Sum_probs=24.9
Q ss_pred CchhHHHHHhhhccCC----CHHHHHHHHhHHHHHH
Q psy12256 347 TPFNGCVQFFMRSTRC----SLVHALEVASLHPAKA 378 (417)
Q Consensus 347 ~~l~~~~~~~~~~~~~----~~~~~l~~~t~~pA~~ 378 (417)
.++.+.++.++...++ ++.++++++|.|+|++
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~aT~~gA~~ 263 (263)
T cd01305 228 PDMWAEMEFLAKYSRLQGYLSPLEILRMATVNAAEF 263 (263)
T ss_pred CCHHHHHHHHHHHhcccccCCHHHHHHHHhhccccC
Confidence 4677777776654444 9999999999999974
No 114
>COG0804 UreC Urea amidohydrolase (urease) alpha subunit [Amino acid transport and metabolism]
Probab=98.68 E-value=2.5e-07 Score=88.53 Aligned_cols=52 Identities=19% Similarity=0.323 Sum_probs=45.5
Q ss_pred HHHHHHHhHHHHHHcCCCCCccccccCCCccEEEEcCC---CceeEEEECCEEec
Q psy12256 365 VHALEVASLHPAKALGLEQHKGTLDFGADADFVILDEG---LHVYSTWIAGDLKL 416 (417)
Q Consensus 365 ~~~l~~~t~~pA~~l~l~~~~G~l~~G~~ADlvv~d~~---~~v~~v~~~G~~v~ 416 (417)
..-+...|.|||-.-|+....|++++||.||||+|++- -++..|++.|-+.|
T Consensus 402 kRYiaKyTINPAIthGis~~vGSvEvGK~ADlVLW~PaFFGvKP~~vlkgG~ia~ 456 (568)
T COG0804 402 KRYIAKYTINPAITHGISHEVGSVEVGKLADLVLWDPAFFGVKPELVLKGGMIAW 456 (568)
T ss_pred hhhhhheecCHHHhcccchhccceeccceeeeeeechhhcCCCcceEEecceeee
Confidence 33466789999999999999999999999999999985 68899999997765
No 115
>COG1229 FwdA Formylmethanofuran dehydrogenase subunit A [Energy production and conversion]
Probab=98.54 E-value=1.2e-05 Score=77.26 Aligned_cols=55 Identities=35% Similarity=0.473 Sum_probs=47.1
Q ss_pred CCCHHHHHHHHhHHHHHHcCCCCCccccccCCCccEEEEcCC-----------------CceeEEEECCEEe
Q psy12256 361 RCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILDEG-----------------LHVYSTWIAGDLK 415 (417)
Q Consensus 361 ~~~~~~~l~~~t~~pA~~l~l~~~~G~l~~G~~ADlvv~d~~-----------------~~v~~v~~~G~~v 415 (417)
.+++.++..|.-.|||+.||+..++|.|.+|.+||+.|.|-+ .+-..|+++|++|
T Consensus 437 E~t~~eia~~TRa~~ak~lgl~e~kGhLg~GadadIaiYdlnP~~vDps~dye~v~kaf~~A~ytlK~GeIv 508 (575)
T COG1229 437 ELTLYELAIMTRANPAKVLGLSERKGHLGVGADADIAIYDLNPEQVDPSNDYEKVEKAFRKAAYTLKGGEIV 508 (575)
T ss_pred cccHHHHHHHHhcChhhhcccccccCccCcCccCceEEEecChhhcCCcccHHHHHHHHhheeEEecCceEE
Confidence 489999999999999999999988999999999999999854 3455667777665
No 116
>TIGR00856 pyrC_dimer dihydroorotase, homodimeric type. This homodimeric form of dihydroorotase is less common in microbial genomes than a related dihydroorotase that appears in a complex with aspartyltranscarbamoylase or as a homologous domain in multifunctional proteins of pyrimidine biosynthesis in higher eukaryotes.
Probab=98.16 E-value=3.9e-05 Score=75.19 Aligned_cols=57 Identities=9% Similarity=0.031 Sum_probs=41.0
Q ss_pred CCCCCCCCchhHHHHHhhhccCCCHHHHHHHHhHHHHHHcCCCCCccccccCCCccEEEEcCCCcee
Q psy12256 340 CNNGGSITPFNGCVQFFMRSTRCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILDEGLHVY 406 (417)
Q Consensus 340 ~~~~g~~~~l~~~~~~~~~~~~~~~~~~l~~~t~~pA~~l~l~~~~G~l~~G~~ADlvv~d~~~~v~ 406 (417)
.++.|....+...+ .+++. +++++++++++|.|||++||+ + .| +|||+++|..+.|.
T Consensus 261 ~G~~g~e~~l~~~~-~~~~~-~~~l~~~v~~~s~nPAk~~gl-~-~~------dAdi~~~~~~~~i~ 317 (341)
T TIGR00856 261 AGCFSAPTALPSYA-EVFEE-MNALENLEAFCSDNGPQFYGL-P-VN------STKIELVKKEQQIP 317 (341)
T ss_pred CCcccHHHHHHHHH-HHHhc-CCCHHHHHHHHhHhHHHHhCC-C-CC------CceEEEEeccEEeC
Confidence 34555555455444 34444 799999999999999999999 3 34 79999997654444
No 117
>TIGR00010 hydrolase, TatD family. Several genomes have multiple paralogs related to this family. However, a set of 17 proteins can be found, one each from 17 of the first 20 genomes, such that each member forms a bidirectional best hit across genomes with all other members of the set. This core set (and one other near-perfect member), but not the other paralogs, form the seed for this model. Additionally, members of the seed alignment and all trusted hits, but not all paralogs, have a conserved motif DxHxH near the amino end. The member from E. coli was recently shown to have DNase activity.
Probab=97.87 E-value=0.005 Score=57.37 Aligned_cols=33 Identities=9% Similarity=0.145 Sum_probs=24.9
Q ss_pred hhHHHHHhhhccCCCHHHHHHHHhHHHHHHcCC
Q psy12256 349 FNGCVQFFMRSTRCSLVHALEVASLHPAKALGL 381 (417)
Q Consensus 349 l~~~~~~~~~~~~~~~~~~l~~~t~~pA~~l~l 381 (417)
+...+..+.+..|++++++.++++.||+++|++
T Consensus 220 i~~~~~~~a~~~g~~~~~~~~~~~~N~~~~~~~ 252 (252)
T TIGR00010 220 VRYTVEAIAEIKGMDVEELAQITTKNAKRLFGL 252 (252)
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHHHHHHhCc
Confidence 333343344345999999999999999999975
No 118
>PF07969 Amidohydro_3: Amidohydrolase family; InterPro: IPR013108 Amidohydrolases are a diverse superfamily of enzymes which catalyse the hydrolysis of amide or amine bonds in a large number of different substrates including urea, cytosine, AMP, formylmethanofuran, etc [, ]. Also included in this superfamily are the phopshotriesterase enzymes, which hydrolyse P-O bonds. Members participate in a large number of processes including nucleotide metabolism, detoxification and neuronal development. They use a variety of divalent metal cofactors for catalysis: for example adenosine deaminase binds a single zinc ion, phopsphotriesterase binds two, while urease binds nickel. It has been postulated that since some of these proteins, such as those some of those involved in neuronal devlopment, appear to have lost their metal-binding centres, their function may simply be to bind, but not hydrolyse, their target molecules. This entry represents a subset of amidohydrolase domains that participate in different functions including cytosine degradation, atrazine degradation and other metabolic processes. The structure of the domain from Escherichia coli has been studied, and like other amidohydrolases it forms a classical alpha-beta TIM-barrel fold []. The active site is located in the mouth of the enzyme barrel and contains a bound iron ion that coordinates a hydroxyl nucleophile. Substrate binding involves a significant conformational change that sequesters the reaction complex from solvent.; PDB: 4F0R_A 4F0S_A 1V4Y_A 1M7J_A 1RK5_A 1RJP_A 1RJR_A 1RJQ_A 1RK6_A 1V51_A ....
Probab=97.80 E-value=1.4e-05 Score=80.24 Aligned_cols=39 Identities=51% Similarity=0.727 Sum_probs=35.2
Q ss_pred cCCCHHHHHHHHhHHHHHHcCCCCCccccccCCCccEEE
Q psy12256 360 TRCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVI 398 (417)
Q Consensus 360 ~~~~~~~~l~~~t~~pA~~l~l~~~~G~l~~G~~ADlvv 398 (417)
..+|++++++++|.|||+.+++++++|+|++||.|||||
T Consensus 366 ~~ls~~eAl~~~T~~~A~~~g~~~~~Gsl~~Gk~AD~vV 404 (404)
T PF07969_consen 366 QRLSLEEALRAYTSNPARALGLEDRKGSLEPGKLADFVV 404 (404)
T ss_dssp GSSHHHHHHHHTTHHHHHHTT-TTTSSSSSTTSBS-EEE
T ss_pred ccCCHHHHHHHHhHHHHHHcCCCCCcceECCCCCcCeEC
Confidence 479999999999999999999999779999999999997
No 119
>cd01292 metallo-dependent_hydrolases Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The family includes urease alpha, adenosine deaminase, phosphotriesterase dihydroorotases, allantoinases, hydantoinases, AMP-, adenine and cytosine deaminases, imidazolonepropionase, aryldialkylphosphatase, chlorohydrolases, formylmethanofuran dehydrogenases and others.
Probab=97.58 E-value=0.0017 Score=60.56 Aligned_cols=32 Identities=28% Similarity=0.460 Sum_probs=23.6
Q ss_pred CchhHHHHHhhhcc--CCCHHHHHHHHhHHHHHH
Q psy12256 347 TPFNGCVQFFMRST--RCSLVHALEVASLHPAKA 378 (417)
Q Consensus 347 ~~l~~~~~~~~~~~--~~~~~~~l~~~t~~pA~~ 378 (417)
..+...++.+++.. ++++.++++++|.|||++
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~n~a~~ 275 (275)
T cd01292 242 TDLLALLRLLLKVLRLGLSLEEALRLATINPARA 275 (275)
T ss_pred CCHHHHHHHHHHHHhcCCCHHHHHHHHhccccCC
Confidence 34666666655433 379999999999999973
No 120
>PLN02599 dihydroorotase
Probab=97.29 E-value=0.024 Score=56.03 Aligned_cols=126 Identities=10% Similarity=0.077 Sum_probs=69.4
Q ss_pred CEeeccchhhcccCCCCCCCCCCCCCcHHHHHHHHHHHHhCCceeeeeccCCCCHHHHHHHHHHHHcCCCCC-CCceeEE
Q psy12256 11 KLIAPGFIDIQINGGFGVDFSHDIDSVDKNVSIVARGILAHGVTSFCPTLVTSEPQVYKKVLSRLRKTPGGK-HGATVLG 89 (417)
Q Consensus 11 ~~v~PG~ID~H~H~~~g~~~~~~~~~~~~~~~~~~~~~~~~GvTt~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~G 89 (417)
.+.+|=--|+|+|...|. +....--+.++|+|+++++.++.|+.+..+.++.+++..... .....++
T Consensus 22 ~~~~~~~~d~h~hlr~~~------------~~~~~~~~~~gg~t~~i~MPn~~Ppv~~~~~~~~~~~~~~~~~~~~vdf~ 89 (364)
T PLN02599 22 ELTITRPDDWHLHLRDGA------------KLAAVVPHSARHFGRAIVMPNLKPPVTTTARALAYRERIMKALPPGSSFE 89 (364)
T ss_pred eEEecCCcceeeEccCcH------------HHHhhhHHhcCCcCEEEECCCCCCCcCCHHHHHHHHHHHhhhcCCCcceE
Confidence 356888899999986431 333344467889999999987766554445554554433110 0112445
Q ss_pred eeeeCCCCCCCCCCCCCCcccCCCcHHHHHHHHHhCCCCCEEEEEe----cCC--C---CChHHHHHHHHHCCCeeeecC
Q psy12256 90 AHVEGPFISPDKKGAHSLSKIVTFDKGFDSVREVYGNLSNIAIITL----APE--L---AGSMEVIDKLVEQGITVSLGH 160 (417)
Q Consensus 90 ~~leGp~~~~~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~ik~~~~----~pe--~---~~~~~~i~~~~~~gi~v~~GH 160 (417)
++... ++.. . ... ++++++.+ .|-.-.+|++.. ... . ....++++.+.+.|+.+.+ |
T Consensus 90 ~~~~l-~lt~--------~--~~l-~Ei~~~~~-~Gvv~gfKlyp~~~tt~s~~gv~d~~~l~~~le~~~e~G~~L~v-H 155 (364)
T PLN02599 90 PLMTL-YLTD--------N--TTP-EEIKAAKA-SGVVFAVKLYPAGATTNSQAGVTDLGKCLPVLEEMAEQGMPLLV-H 155 (364)
T ss_pred EEEEE-ecCC--------C--CCH-HHHHHHHH-CCCcEEEEECcccCcCCCccccCCHHHHHHHHHHHHhcCCEEEE-e
Confidence 44321 1110 0 011 45666633 342203565421 111 1 1245888999999999988 8
Q ss_pred Cc
Q psy12256 161 SS 162 (417)
Q Consensus 161 ~~ 162 (417)
.+
T Consensus 156 ~E 157 (364)
T PLN02599 156 GE 157 (364)
T ss_pred cC
Confidence 86
No 121
>cd01310 TatD_DNAse TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.
Probab=97.27 E-value=0.16 Score=47.12 Aligned_cols=35 Identities=11% Similarity=0.082 Sum_probs=27.8
Q ss_pred CCchhHHHHHhhhccCCCHHHHHHHHhHHHHHHcC
Q psy12256 346 ITPFNGCVQFFMRSTRCSLVHALEVASLHPAKALG 380 (417)
Q Consensus 346 ~~~l~~~~~~~~~~~~~~~~~~l~~~t~~pA~~l~ 380 (417)
...+...+..+.+..|++.+++.++.+.||+++|+
T Consensus 217 ~~~~~~~~~~la~~~gl~~e~~~~~~~~N~~~ll~ 251 (251)
T cd01310 217 PAYVKHVAEKIAELKGISVEEVAEVTTENAKRLFG 251 (251)
T ss_pred ChhHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhC
Confidence 34456666666555699999999999999999985
No 122
>PRK10812 putative DNAse; Provisional
Probab=96.67 E-value=0.44 Score=45.00 Aligned_cols=35 Identities=9% Similarity=0.113 Sum_probs=27.5
Q ss_pred chhHHHHHhhhccCCCHHHHHHHHhHHHHHHcCCC
Q psy12256 348 PFNGCVQFFMRSTRCSLVHALEVASLHPAKALGLE 382 (417)
Q Consensus 348 ~l~~~~~~~~~~~~~~~~~~l~~~t~~pA~~l~l~ 382 (417)
.+...+..+.+..|++.+++.+.++.|+.++|++.
T Consensus 223 ~i~~v~~~ia~l~g~~~eei~~~~~~N~~~lf~~~ 257 (265)
T PRK10812 223 MVRDVAEYMAVLKGVSVEELAQVTTDNFARLFHID 257 (265)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCC
Confidence 34454555545568999999999999999999985
No 123
>PRK06886 hypothetical protein; Validated
Probab=96.44 E-value=1 Score=43.97 Aligned_cols=36 Identities=22% Similarity=0.262 Sum_probs=26.1
Q ss_pred CchhHHHHHhhhcc-CCCHHHHHHHHhHHHHHHcCCC
Q psy12256 347 TPFNGCVQFFMRST-RCSLVHALEVASLHPAKALGLE 382 (417)
Q Consensus 347 ~~l~~~~~~~~~~~-~~~~~~~l~~~t~~pA~~l~l~ 382 (417)
.+|.+.++.+.... -.++.++++|+|.|+|+.+|++
T Consensus 292 ~Dmle~~~l~~~~~~~~~~~~~l~maT~~gAraLgl~ 328 (329)
T PRK06886 292 GDMWQELSLLAAGCRFYDLDEMVNIASINGRKVLGLE 328 (329)
T ss_pred CCHHHHHHHHHHHcCCCCHHHHHHHHhhhHHHHhCCC
Confidence 45655555444322 2478999999999999999984
No 124
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=96.43 E-value=0.82 Score=42.86 Aligned_cols=34 Identities=12% Similarity=0.116 Sum_probs=27.0
Q ss_pred chhHHHHHhhhccCCCHHHHHHHHhHHHHHHcCC
Q psy12256 348 PFNGCVQFFMRSTRCSLVHALEVASLHPAKALGL 381 (417)
Q Consensus 348 ~l~~~~~~~~~~~~~~~~~~l~~~t~~pA~~l~l 381 (417)
.+...+..+.+..|++++++.+..|.|.-++|++
T Consensus 223 ~v~~v~~~iAelk~~~~eeva~~t~~N~~~lf~~ 256 (256)
T COG0084 223 YVRHVAEKLAELKGISAEEVAEITTENAKRLFGL 256 (256)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcC
Confidence 3455556666666999999999999999999874
No 125
>PRK11449 putative deoxyribonuclease YjjV; Provisional
Probab=96.08 E-value=1.3 Score=41.68 Aligned_cols=34 Identities=6% Similarity=-0.093 Sum_probs=26.8
Q ss_pred chhHHHHHhhhccCCCHHHHHHHHhHHHHHHcCC
Q psy12256 348 PFNGCVQFFMRSTRCSLVHALEVASLHPAKALGL 381 (417)
Q Consensus 348 ~l~~~~~~~~~~~~~~~~~~l~~~t~~pA~~l~l 381 (417)
.+...+..+.+..+++++++.+..+.|..++|++
T Consensus 225 ~~~~~~~~ia~l~~~~~~el~~~~~~N~~~lf~~ 258 (258)
T PRK11449 225 QAARVFDVLCELRPEPADEIAEVLLNNTYTLFNV 258 (258)
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhCc
Confidence 4555566655666899999999999999999874
No 126
>cd00530 PTE Phosphotriesterase (PTE) catalyzes the hydrolysis of organophosphate nerve agents, including the chemical warfare agents VX, soman, and sarin as well as the insecticide paraoxon. PTE exists as a homodimer with one active site per monomer. The active site is located next to a binuclear metal center, at the C-terminal end of a TIM alpha- beta barrel motif. The native enzyme contains two zinc ions at the active site however these can be replaced with other metals such as cobalt, cadmium, nickel or manganese and the enzyme remains active.
Probab=96.02 E-value=1.4 Score=41.95 Aligned_cols=30 Identities=13% Similarity=-0.022 Sum_probs=23.8
Q ss_pred hHHHHHhhhccCCCHHHHHHHHhHHHHHHc
Q psy12256 350 NGCVQFFMRSTRCSLVHALEVASLHPAKAL 379 (417)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~l~~~t~~pA~~l 379 (417)
...+....+..|++.+++.++++.||+++|
T Consensus 264 ~~~~~~~~~~~g~~~e~i~~~~~~N~~~lf 293 (293)
T cd00530 264 LTRFIPRLRERGVTEEQLDTILVENPARFL 293 (293)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHCHHHhC
Confidence 344445555679999999999999999875
No 127
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=95.51 E-value=1.8 Score=39.18 Aligned_cols=67 Identities=13% Similarity=0.005 Sum_probs=47.4
Q ss_pred ceeeChHHHHHHHhcCCCCeEEeeCCeeeeeeecccccceeeCCCCCCCCCCCchhHHHHHhhhccCCCHHHHHHHHhHH
Q psy12256 295 GVHTHPSALRIANSTHPEGSITPFNGCVQFFMRSTRCSLWFDLGNCNNGGSITPFNGCVQFFMRSTRCSLVHALEVASLH 374 (417)
Q Consensus 295 g~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~l~~~t~~ 374 (417)
|.-.+..+.++..+++.+++++-||.-. . . .-.+..++....+-+ .|+.-+++-+.+-.|
T Consensus 187 gKlt~~eAveIV~ey~~~r~ilnSD~~s-------------~-~-----sd~lavprtal~m~~-~gv~~~~i~kV~~~N 246 (254)
T COG1099 187 GKLTVEEAVEIVREYGAERIILNSDAGS-------------A-A-----SDPLAVPRTALEMEE-RGVGEEEIEKVVREN 246 (254)
T ss_pred CcCCHHHHHHHHHHhCcceEEEeccccc-------------c-c-----ccchhhhHHHHHHHH-hcCCHHHHHHHHHHH
Confidence 4445567888888888888888887442 1 1 112345665555543 599999999999999
Q ss_pred HHHHcCC
Q psy12256 375 PAKALGL 381 (417)
Q Consensus 375 pA~~l~l 381 (417)
+-+++|+
T Consensus 247 A~~~~~l 253 (254)
T COG1099 247 ALSFYGL 253 (254)
T ss_pred HHHHhCc
Confidence 9999886
No 128
>PRK09875 putative hydrolase; Provisional
Probab=95.32 E-value=1.7 Score=41.71 Aligned_cols=31 Identities=6% Similarity=0.044 Sum_probs=23.4
Q ss_pred hhHHHHHhhhccCCCHHHHHHHHhHHHHHHcC
Q psy12256 349 FNGCVQFFMRSTRCSLVHALEVASLHPAKALG 380 (417)
Q Consensus 349 l~~~~~~~~~~~~~~~~~~l~~~t~~pA~~l~ 380 (417)
+...+-.+. ..|++.+++=+|...||+++|.
T Consensus 262 ~~~~ip~L~-~~Gvse~~I~~m~~~NP~r~~~ 292 (292)
T PRK09875 262 LTTFIPQLR-QSGFSQADVDVMLRENPSQFFQ 292 (292)
T ss_pred HHHHHHHHH-HcCCCHHHHHHHHHHCHHHHhC
Confidence 333343444 4699999999999999999874
No 129
>PF12890 DHOase: Dihydro-orotase-like; InterPro: IPR024403 This entry represents a small family of dihydro-orotase-like proteins from bacteria.
Probab=94.54 E-value=0.022 Score=46.97 Aligned_cols=16 Identities=44% Similarity=0.912 Sum_probs=14.7
Q ss_pred CCEeeccchhhcccCC
Q psy12256 10 GKLIAPGFIDIQINGG 25 (417)
Q Consensus 10 G~~v~PG~ID~H~H~~ 25 (417)
|++++|||||+|+|..
T Consensus 1 ~kli~~g~vd~hVhlr 16 (142)
T PF12890_consen 1 GKLILPGLVDVHVHLR 16 (142)
T ss_pred Cceeehhhhhhhhhhh
Confidence 6899999999999975
No 130
>PRK10425 DNase TatD; Provisional
Probab=94.01 E-value=5.4 Score=37.46 Aligned_cols=35 Identities=9% Similarity=-0.011 Sum_probs=28.5
Q ss_pred CchhHHHHHhhhccCCCHHHHHHHHhHHHHHHcCC
Q psy12256 347 TPFNGCVQFFMRSTRCSLVHALEVASLHPAKALGL 381 (417)
Q Consensus 347 ~~l~~~~~~~~~~~~~~~~~~l~~~t~~pA~~l~l 381 (417)
..+...+..+.+..+++.+++.+.++.|.-++|++
T Consensus 224 ~~i~~v~~~iA~l~~~~~~~v~~~~~~N~~~lf~~ 258 (258)
T PRK10425 224 AFLPHILQRIAHWRGEDAAWLAATTDANARTLFGL 258 (258)
T ss_pred HHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhCc
Confidence 34666677777667999999999999999999874
No 131
>PRK05451 dihydroorotase; Provisional
Probab=93.99 E-value=0.056 Score=53.17 Aligned_cols=30 Identities=23% Similarity=0.231 Sum_probs=28.2
Q ss_pred CCHHHHHHHHhHHHHHHcCCCCCccccccC
Q psy12256 362 CSLVHALEVASLHPAKALGLEQHKGTLDFG 391 (417)
Q Consensus 362 ~~~~~~l~~~t~~pA~~l~l~~~~G~l~~G 391 (417)
.+++++++++|.|||++||+.+++|+|.+|
T Consensus 284 ~~l~~~v~~~s~nPAkifGl~~~KG~i~~~ 313 (345)
T PRK05451 284 GALDKLEAFASLNGPDFYGLPRNTDTITLV 313 (345)
T ss_pred CCHHHHHHHHhHHHHHHhCCCCCCCeEEEE
Confidence 499999999999999999998889999888
No 132
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=92.34 E-value=0.44 Score=42.78 Aligned_cols=59 Identities=19% Similarity=0.130 Sum_probs=39.5
Q ss_pred chhhcccCCCCCCCCCCCCCcHHHHHHHHHHHHhCCceeeeecc------CCCCHHHHHHHHHHHHcC
Q psy12256 17 FIDIQINGGFGVDFSHDIDSVDKNVSIVARGILAHGVTSFCPTL------VTSEPQVYKKVLSRLRKT 78 (417)
Q Consensus 17 ~ID~H~H~~~g~~~~~~~~~~~~~~~~~~~~~~~~GvTt~~~~~------~~~~~~~~~~~~~~~~~~ 78 (417)
|||+|.|.--++|-.. ...+....++++.-+.|||++..|. ..++.+.+......+++.
T Consensus 1 MIDIH~HIlp~iDDGp---~s~eesl~ml~~A~~qGvt~iVaTsHh~~g~y~n~~~~v~~~~~~ln~~ 65 (254)
T COG4464 1 MIDIHSHILPDIDDGP---KSLEESLAMLREAVRQGVTKIVATSHHLHGRYENPIEKVKEKANQLNEI 65 (254)
T ss_pred CccccccccCCCCCCC---CcHHHHHHHHHHHHHcCceEEeecccccCCccCChHHHHHHHHHHHHHH
Confidence 6999999865554322 2345566788889999999999873 234455566555555544
No 133
>TIGR03583 EF_0837 probable amidohydrolase EF_0837/AHA_3915. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. These proteins resemble aminohydrolases (see pfam01979), including dihydroorotases. The function is unknown.
Probab=91.25 E-value=0.11 Score=51.54 Aligned_cols=66 Identities=20% Similarity=0.232 Sum_probs=47.5
Q ss_pred CCCCCCCCHHHHHHHHHccceeeeccccccCCCCCCCCccccccccccccCCcceeeeeCCcee-eChHHHHH
Q psy12256 234 PEGHSSADIHIAEEAVRHGASLITHLFNAMLPFHHRDPGIIGLLSSDNIDSSKVYYGIIADGVH-THPSALRI 305 (417)
Q Consensus 234 ~~~h~~~~~e~~~~a~~~g~~~~td~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~i~dg~~-~~~~~l~~ 305 (417)
..+|+...++++.++++.| ..++|+||+|+++++|+++.++..+ ...+..++|.|..| ..+..++.
T Consensus 184 H~~~a~~~~~~i~~~~~~g-~~~~H~fng~~~~~~r~~g~~~~~~-----~~~l~~G~i~d~~hg~~~~~~~~ 250 (365)
T TIGR03583 184 HIGSAPPELDEILALMEKG-DVLTHCFNGKPNGILRETGEVKPSV-----LEAYNRGVILDVGHGTASFSFHV 250 (365)
T ss_pred EeCCCccCHHHHHHHhcCC-CeeeeeecCCCCCCCCCcchHHHHH-----HHHHhCeEEEEeCCCCCCchHHH
Confidence 4667788889999999888 6899999999999999998876532 12455566666543 44444343
No 134
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=89.57 E-value=4.9 Score=39.75 Aligned_cols=132 Identities=21% Similarity=0.292 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHhCCceeeeeccCCCCHHHHHHHHHHHHcCCCCCCCceeEEe-ee-eCCCCCCCCCCCCCCcccCCCcH
Q psy12256 38 DKNVSIVARGILAHGVTSFCPTLVTSEPQVYKKVLSRLRKTPGGKHGATVLGA-HV-EGPFISPDKKGAHSLSKIVTFDK 115 (417)
Q Consensus 38 ~~~~~~~~~~~~~~GvTt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~-~l-eGp~~~~~~~G~~~~~~~~~~~~ 115 (417)
.|-++.+.+...++|++.|+-+.--++.-++..++++.++. |....|. .. ..| +|+-+.+. +
T Consensus 97 DDvVe~Fv~ka~~nGidvfRiFDAlND~RNl~~ai~a~kk~-----G~h~q~~i~YT~sP--------vHt~e~yv---~ 160 (472)
T COG5016 97 DDVVEKFVEKAAENGIDVFRIFDALNDVRNLKTAIKAAKKH-----GAHVQGTISYTTSP--------VHTLEYYV---E 160 (472)
T ss_pred hHHHHHHHHHHHhcCCcEEEechhccchhHHHHHHHHHHhc-----CceeEEEEEeccCC--------cccHHHHH---H
Confidence 34577888889999999998443334444566666666553 2333332 11 222 34433222 2
Q ss_pred HHHHHHHHhCCCCCEEEEEecCCC--CChHHHHHHHHHC-CCeeeec-CCcCCHH--HHHHHHHCCCCeEeeCCCCcc
Q psy12256 116 GFDSVREVYGNLSNIAIITLAPEL--AGSMEVIDKLVEQ-GITVSLG-HSSADIN--IAEEAVRHGASLITHLFNAML 187 (417)
Q Consensus 116 ~~~~~~~~~g~~~~ik~~~~~pe~--~~~~~~i~~~~~~-gi~v~~G-H~~~~~~--~~~~a~~~G~~~i~Hl~~~~~ 187 (417)
..+++.+. | .++|.+-..+.-+ ..+.+.++.+++. ++.+.++ |..+... .-..|+++|+|.+.-..+-|+
T Consensus 161 ~akel~~~-g-~DSIciKDmaGlltP~~ayelVk~iK~~~~~pv~lHtH~TsG~a~m~ylkAvEAGvD~iDTAisp~S 236 (472)
T COG5016 161 LAKELLEM-G-VDSICIKDMAGLLTPYEAYELVKAIKKELPVPVELHTHATSGMAEMTYLKAVEAGVDGIDTAISPLS 236 (472)
T ss_pred HHHHHHHc-C-CCEEEeecccccCChHHHHHHHHHHHHhcCCeeEEecccccchHHHHHHHHHHhCcchhhhhhcccc
Confidence 33444443 3 4666544433322 2346888888875 6777663 4443333 335789999999988666555
No 135
>PF07969 Amidohydro_3: Amidohydrolase family; InterPro: IPR013108 Amidohydrolases are a diverse superfamily of enzymes which catalyse the hydrolysis of amide or amine bonds in a large number of different substrates including urea, cytosine, AMP, formylmethanofuran, etc [, ]. Also included in this superfamily are the phopshotriesterase enzymes, which hydrolyse P-O bonds. Members participate in a large number of processes including nucleotide metabolism, detoxification and neuronal development. They use a variety of divalent metal cofactors for catalysis: for example adenosine deaminase binds a single zinc ion, phopsphotriesterase binds two, while urease binds nickel. It has been postulated that since some of these proteins, such as those some of those involved in neuronal devlopment, appear to have lost their metal-binding centres, their function may simply be to bind, but not hydrolyse, their target molecules. This entry represents a subset of amidohydrolase domains that participate in different functions including cytosine degradation, atrazine degradation and other metabolic processes. The structure of the domain from Escherichia coli has been studied, and like other amidohydrolases it forms a classical alpha-beta TIM-barrel fold []. The active site is located in the mouth of the enzyme barrel and contains a bound iron ion that coordinates a hydroxyl nucleophile. Substrate binding involves a significant conformational change that sequesters the reaction complex from solvent.; PDB: 4F0R_A 4F0S_A 1V4Y_A 1M7J_A 1RK5_A 1RJP_A 1RJR_A 1RJQ_A 1RK6_A 1V51_A ....
Probab=89.51 E-value=0.11 Score=51.91 Aligned_cols=14 Identities=36% Similarity=0.636 Sum_probs=11.5
Q ss_pred EeeccchhhcccCC
Q psy12256 12 LIAPGFIDIQINGG 25 (417)
Q Consensus 12 ~v~PG~ID~H~H~~ 25 (417)
+|+|||||.|+|..
T Consensus 1 ~v~PGfiD~H~H~~ 14 (404)
T PF07969_consen 1 TVMPGFIDSHTHLD 14 (404)
T ss_dssp EEEE-EEEEEEEHT
T ss_pred CCccChhHHhhChH
Confidence 68999999999954
No 136
>PF01026 TatD_DNase: TatD related DNase The Pfam entry finds members not in the Prosite definition.; InterPro: IPR001130 This family of proteins are related to a large superfamily of metalloenzymes []. TatD, a member of this family has been shown experimentally to be a DNase enzyme []. Allantoinase 3.5.2.5 from EC, N-isopropylammelide isopropyl amidohydrolase 3.5.1 from EC and the SCN1 protein from fission yeast belong to this family.; GO: 0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters; PDB: 3E2V_B 1XWY_A 3GUW_D 3RCM_A 1ZZM_A 2XIO_A 1J6O_A 2GZX_A 3IPW_A 2Y1H_A ....
Probab=89.47 E-value=18 Score=33.71 Aligned_cols=33 Identities=12% Similarity=0.096 Sum_probs=27.5
Q ss_pred chhHHHHHhhhccCCCHHHHHHHHhHHHHHHcC
Q psy12256 348 PFNGCVQFFMRSTRCSLVHALEVASLHPAKALG 380 (417)
Q Consensus 348 ~l~~~~~~~~~~~~~~~~~~l~~~t~~pA~~l~ 380 (417)
.+...++.+.+..+++++++.+....|..++||
T Consensus 223 ~i~~~~~~la~~~~~~~e~~~~~~~~N~~r~f~ 255 (255)
T PF01026_consen 223 NIPKVAQALAEIKGISLEELAQIIYENAKRLFG 255 (255)
T ss_dssp GHHHHHHHHHHHHTSTHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhC
Confidence 466667777766789999999999999999886
No 137
>TIGR01430 aden_deam adenosine deaminase. This family includes the experimentally verified adenosine deaminases of mammals and E. coli. Other members of this family are predicted also to be adenosine deaminase, an enzyme of nucleotide degradation. This family is distantly related to AMP deaminase.
Probab=89.36 E-value=3.2 Score=40.29 Aligned_cols=34 Identities=6% Similarity=-0.073 Sum_probs=30.1
Q ss_pred chhHHHHHhhhccCCCHHHHHHHHhHHHHHHcCCC
Q psy12256 348 PFNGCVQFFMRSTRCSLVHALEVASLHPAKALGLE 382 (417)
Q Consensus 348 ~l~~~~~~~~~~~~~~~~~~l~~~t~~pA~~l~l~ 382 (417)
+|...+..+++..|+++.+ ++++|.|+++..-++
T Consensus 280 ~l~~e~~~a~~~~~l~~~e-l~~~~~na~~~~f~~ 313 (324)
T TIGR01430 280 YLTEEYEIAAKHAGLTEEE-LKQLARNALEGSFLS 313 (324)
T ss_pred CHHHHHHHHHHHcCCCHHH-HHHHHHHHHHHhCCC
Confidence 7889999998878999999 779999999988765
No 138
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=84.14 E-value=20 Score=41.02 Aligned_cols=141 Identities=16% Similarity=0.186 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHhCCceeeeeccCCCCHHHHHHHHHHHHcCCCCCCCceeE-EeeeeCCCCCCCCCCCCCCcccCCCcHH
Q psy12256 38 DKNVSIVARGILAHGVTSFCPTLVTSEPQVYKKVLSRLRKTPGGKHGATVL-GAHVEGPFISPDKKGAHSLSKIVTFDKG 116 (417)
Q Consensus 38 ~~~~~~~~~~~~~~GvTt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~~leGp~~~~~~~G~~~~~~~~~~~~~ 116 (417)
.+-++.+.+...++|+..|+-+..-+....+..+.+..++. +...- .+..+|+.+++... .++.+++. +.
T Consensus 624 d~vv~~f~~~~~~~GidifrifD~lN~~~n~~~~~~~~~~~-----g~~~~~~i~yt~~~~d~~~~-~~~l~y~~---~~ 694 (1143)
T TIGR01235 624 DNVVKYFVKQAAQGGIDIFRVFDSLNWVENMRVGMDAVAEA-----GKVVEAAICYTGDILDPARP-KYDLKYYT---NL 694 (1143)
T ss_pred HHHHHHHHHHHHHcCCCEEEECccCcCHHHHHHHHHHHHHc-----CCEEEEEEEEeccCCCcCCC-CCCHHHHH---HH
Confidence 34577788888999999998554444455666666666553 22222 35667777665432 22322221 22
Q ss_pred HHHHHHHhCCCCCEEEEEecCCC--CChHHHHHHHHHC-CCeeeec-CCcC--CHHHHHHHHHCCCCeEeeCCCCcccc
Q psy12256 117 FDSVREVYGNLSNIAIITLAPEL--AGSMEVIDKLVEQ-GITVSLG-HSSA--DINIAEEAVRHGASLITHLFNAMLPF 189 (417)
Q Consensus 117 ~~~~~~~~g~~~~ik~~~~~pe~--~~~~~~i~~~~~~-gi~v~~G-H~~~--~~~~~~~a~~~G~~~i~Hl~~~~~~~ 189 (417)
.+++.+ .| .+.|.+-..+--. ..+.+.++.+++. ++.+.++ |... .......|+++|++.+.-..++|.+.
T Consensus 695 ak~l~~-~G-ad~I~ikDt~Gll~P~~~~~Lv~~lk~~~~~pi~~H~Hdt~Gla~an~laA~eaGad~vD~ai~gl~G~ 771 (1143)
T TIGR01235 695 AVELEK-AG-AHILGIKDMAGLLKPAAAKLLIKALREKTDLPIHFHTHDTSGIAVASMLAAVEAGVDVVDVAVDSMSGL 771 (1143)
T ss_pred HHHHHH-cC-CCEEEECCCcCCcCHHHHHHHHHHHHHhcCCeEEEEECCCCCcHHHHHHHHHHhCCCEEEecchhhcCC
Confidence 333333 34 2333322222111 1245667777664 6766663 5542 23456788999999999988887644
No 139
>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.
Probab=82.64 E-value=13 Score=35.89 Aligned_cols=35 Identities=9% Similarity=-0.045 Sum_probs=28.3
Q ss_pred CchhHHHHHhhhccCCCHHHHHHHHhHHHHHHcCCC
Q psy12256 347 TPFNGCVQFFMRSTRCSLVHALEVASLHPAKALGLE 382 (417)
Q Consensus 347 ~~l~~~~~~~~~~~~~~~~~~l~~~t~~pA~~l~l~ 382 (417)
.+|...++.+++..++++.++ ..+|.|++++..+.
T Consensus 280 ~~~~~e~~~~~~~~~l~~~el-~~~~~na~~~~f~~ 314 (325)
T cd01320 280 TYLTDEYELLAEAFGLTEEEL-KKLARNAVEASFLS 314 (325)
T ss_pred CCHHHHHHHHHHHcCCCHHHH-HHHHHHHHHHhCCC
Confidence 468888888887779999995 56889999987764
No 140
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=82.09 E-value=19 Score=32.38 Aligned_cols=89 Identities=18% Similarity=0.266 Sum_probs=59.7
Q ss_pred EEEEEecCCCCChHHHHHHHHHC--CCeeeecCCcCCHHHHHHHHHCCCCeEeeCCCCcccccccCCceEEeecCCCCCC
Q psy12256 130 IAIITLAPELAGSMEVIDKLVEQ--GITVSLGHSSADINIAEEAVRHGASLITHLFNAMLPFHHRDPGIIGLLSSDNIDS 207 (417)
Q Consensus 130 ik~~~~~pe~~~~~~~i~~~~~~--gi~v~~GH~~~~~~~~~~a~~~G~~~i~Hl~~~~~~~~~r~~g~~~~~~~~~l~~ 207 (417)
++.+-++=..+...+.|++++++ ++.+..| +--+.+++++++++|++.+-- |
T Consensus 30 i~~iEit~~tp~a~~~I~~l~~~~~~~~vGAG-TVl~~e~a~~ai~aGA~FivS------------P------------- 83 (201)
T PRK06015 30 LPAIEITLRTPAALDAIRAVAAEVEEAIVGAG-TILNAKQFEDAAKAGSRFIVS------------P------------- 83 (201)
T ss_pred CCEEEEeCCCccHHHHHHHHHHHCCCCEEeeE-eCcCHHHHHHHHHcCCCEEEC------------C-------------
Confidence 55554443345566788887765 4556555 446899999999999854422 0
Q ss_pred CceEEEEecCCCcCCHHHHHHHHhhC-CCCCCCCCHHHHHHHHHccceee
Q psy12256 208 SKVYYGIIADGVHTHPSALRIANSTH-PEGHSSADIHIAEEAVRHGASLI 256 (417)
Q Consensus 208 ~~~~~~~i~dg~h~~~~~~~~~~~~~-~~~h~~~~~e~~~~a~~~g~~~~ 256 (417)
+++++.++.+.+.. ..-....+..|+..|++.|+..+
T Consensus 84 ------------~~~~~vi~~a~~~~i~~iPG~~TptEi~~A~~~Ga~~v 121 (201)
T PRK06015 84 ------------GTTQELLAAANDSDVPLLPGAATPSEVMALREEGYTVL 121 (201)
T ss_pred ------------CCCHHHHHHHHHcCCCEeCCCCCHHHHHHHHHCCCCEE
Confidence 22467777776653 33356678899999999998876
No 141
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=81.50 E-value=14 Score=33.63 Aligned_cols=90 Identities=23% Similarity=0.230 Sum_probs=60.3
Q ss_pred hHHHHHHHHHCCCeeeecCCcCCHHHHHHHHHCCCCeEeeCCCCcccccccCCceEEeecCCCCCCCceEEEEecCCCcC
Q psy12256 142 SMEVIDKLVEQGITVSLGHSSADINIAEEAVRHGASLITHLFNAMLPFHHRDPGIIGLLSSDNIDSSKVYYGIIADGVHT 221 (417)
Q Consensus 142 ~~~~i~~~~~~gi~v~~GH~~~~~~~~~~a~~~G~~~i~Hl~~~~~~~~~r~~g~~~~~~~~~l~~~~~~~~~i~dg~h~ 221 (417)
..++++.+.+.|+++.++-. -+.+++..+.++|++.+....|-|... |. ||+-+
T Consensus 90 gl~ai~~L~~~gi~v~~T~V-~s~~Qa~~Aa~AGA~yvsP~vgR~~~~-----g~--------------------dg~~~ 143 (211)
T cd00956 90 GLKAIKKLSEEGIKTNVTAI-FSAAQALLAAKAGATYVSPFVGRIDDL-----GG--------------------DGMEL 143 (211)
T ss_pred HHHHHHHHHHcCCceeeEEe-cCHHHHHHHHHcCCCEEEEecChHhhc-----CC--------------------CHHHH
Confidence 46899999999999987544 678999999999998888877665321 11 22211
Q ss_pred CHHHHHHHHhhC-C---CCCCCCCHHHHHHHHHccceeee
Q psy12256 222 HPSALRIANSTH-P---EGHSSADIHIAEEAVRHGASLIT 257 (417)
Q Consensus 222 ~~~~~~~~~~~~-~---~~h~~~~~e~~~~a~~~g~~~~t 257 (417)
-.+..+...+.. . ..-+..+.+++.+|...|+..+|
T Consensus 144 i~~i~~~~~~~~~~tkil~As~r~~~ei~~a~~~Gad~vT 183 (211)
T cd00956 144 IREIRTIFDNYGFDTKILAASIRNPQHVIEAALAGADAIT 183 (211)
T ss_pred HHHHHHHHHHcCCCceEEecccCCHHHHHHHHHcCCCEEE
Confidence 122333332221 2 33456678899999999998875
No 142
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=79.54 E-value=21 Score=37.79 Aligned_cols=134 Identities=22% Similarity=0.237 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHhCCceeeeeccCCCCHHHHHHHHHHHHcCCCCCCCceeEE-eeeeCCCCCCCCCCCCCCcccCCCcHHH
Q psy12256 39 KNVSIVARGILAHGVTSFCPTLVTSEPQVYKKVLSRLRKTPGGKHGATVLG-AHVEGPFISPDKKGAHSLSKIVTFDKGF 117 (417)
Q Consensus 39 ~~~~~~~~~~~~~GvTt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G-~~leGp~~~~~~~G~~~~~~~~~~~~~~ 117 (417)
+-++...+...++|+..|+-+.--+....+...++..++. +....| +.+.+ ++ .|+.+++. +..
T Consensus 96 ~vv~~~v~~a~~~Gidv~Rifd~lnd~~n~~~~i~~~k~~-----G~~~~~~i~yt~---sp----~~t~e~~~---~~a 160 (596)
T PRK14042 96 DVVRAFVKLAVNNGVDVFRVFDALNDARNLKVAIDAIKSH-----KKHAQGAICYTT---SP----VHTLDNFL---ELG 160 (596)
T ss_pred HHHHHHHHHHHHcCCCEEEEcccCcchHHHHHHHHHHHHc-----CCEEEEEEEecC---CC----CCCHHHHH---HHH
Confidence 3466788888999999998544334455566666666553 222223 23322 11 23332221 223
Q ss_pred HHHHHHhCCCCCEEEEEecCCC--CChHHHHHHHHHC-CCeeeec-CCcCC--HHHHHHHHHCCCCeEeeCCCCcccc
Q psy12256 118 DSVREVYGNLSNIAIITLAPEL--AGSMEVIDKLVEQ-GITVSLG-HSSAD--INIAEEAVRHGASLITHLFNAMLPF 189 (417)
Q Consensus 118 ~~~~~~~g~~~~ik~~~~~pe~--~~~~~~i~~~~~~-gi~v~~G-H~~~~--~~~~~~a~~~G~~~i~Hl~~~~~~~ 189 (417)
+++.+ +| .+.|.+-..+--. ..+.+.++.+++. ++.+.++ |.... ......|+++|++.+.-..++|.+.
T Consensus 161 k~l~~-~G-ad~I~IkDtaG~l~P~~v~~lv~alk~~~~ipi~~H~Hnt~Gla~an~laAieaGad~iD~ai~glGg~ 236 (596)
T PRK14042 161 KKLAE-MG-CDSIAIKDMAGLLTPTVTVELYAGLKQATGLPVHLHSHSTSGLASICHYEAVLAGCNHIDTAISSFSGG 236 (596)
T ss_pred HHHHH-cC-CCEEEeCCcccCCCHHHHHHHHHHHHhhcCCEEEEEeCCCCCcHHHHHHHHHHhCCCEEEeccccccCC
Confidence 33333 34 2334332222111 1245667776654 6666653 55422 3456788999999999888877643
No 143
>PRK09358 adenosine deaminase; Provisional
Probab=78.91 E-value=39 Score=32.88 Aligned_cols=35 Identities=11% Similarity=-0.082 Sum_probs=27.9
Q ss_pred CchhHHHHHhhhccCCCHHHHHHHHhHHHHHHcCCC
Q psy12256 347 TPFNGCVQFFMRSTRCSLVHALEVASLHPAKALGLE 382 (417)
Q Consensus 347 ~~l~~~~~~~~~~~~~~~~~~l~~~t~~pA~~l~l~ 382 (417)
.+|...++.+.+..|+++.++ ..++.|+.+.--++
T Consensus 289 ~~l~~e~~~~~~~~~l~~~el-~~l~~nai~~sf~~ 323 (340)
T PRK09358 289 TTLTEEYEALAEAFGLSDEDL-AQLARNALEAAFLS 323 (340)
T ss_pred CCHHHHHHHHHHHhCCCHHHH-HHHHHHHHHHHCCC
Confidence 578899998888779999995 56678888876554
No 144
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=74.66 E-value=40 Score=30.49 Aligned_cols=89 Identities=17% Similarity=0.208 Sum_probs=57.6
Q ss_pred EEEEEecCCCCChHHHHHHHHHC--CCeeeecCCcCCHHHHHHHHHCCCCeEeeCCCCcccccccCCceEEeecCCCCCC
Q psy12256 130 IAIITLAPELAGSMEVIDKLVEQ--GITVSLGHSSADINIAEEAVRHGASLITHLFNAMLPFHHRDPGIIGLLSSDNIDS 207 (417)
Q Consensus 130 ik~~~~~pe~~~~~~~i~~~~~~--gi~v~~GH~~~~~~~~~~a~~~G~~~i~Hl~~~~~~~~~r~~g~~~~~~~~~l~~ 207 (417)
++.+-++=..+...+.|++++++ ++.+..|.. -+.+++++++++|++.+-- |
T Consensus 34 i~~iEit~~t~~a~~~i~~l~~~~~~~~vGAGTV-l~~~~a~~a~~aGA~Fivs------------P------------- 87 (204)
T TIGR01182 34 LRVLEVTLRTPVALDAIRLLRKEVPDALIGAGTV-LNPEQLRQAVDAGAQFIVS------------P------------- 87 (204)
T ss_pred CCEEEEeCCCccHHHHHHHHHHHCCCCEEEEEeC-CCHHHHHHHHHcCCCEEEC------------C-------------
Confidence 54443333334456788888765 355655544 7899999999999866521 1
Q ss_pred CceEEEEecCCCcCCHHHHHHHHhhC-CCCCCCCCHHHHHHHHHccceee
Q psy12256 208 SKVYYGIIADGVHTHPSALRIANSTH-PEGHSSADIHIAEEAVRHGASLI 256 (417)
Q Consensus 208 ~~~~~~~i~dg~h~~~~~~~~~~~~~-~~~h~~~~~e~~~~a~~~g~~~~ 256 (417)
+++++.++.+.+.. ..-....+..|+..|++.|+..+
T Consensus 88 ------------~~~~~v~~~~~~~~i~~iPG~~TptEi~~A~~~Ga~~v 125 (204)
T TIGR01182 88 ------------GLTPELAKHAQDHGIPIIPGVATPSEIMLALELGITAL 125 (204)
T ss_pred ------------CCCHHHHHHHHHcCCcEECCCCCHHHHHHHHHCCCCEE
Confidence 11356666666542 33345677889999999998876
No 145
>PRK05451 dihydroorotase; Provisional
Probab=74.50 E-value=14 Score=36.31 Aligned_cols=42 Identities=14% Similarity=-0.076 Sum_probs=26.4
Q ss_pred EeeccchhhcccCCCCCCCCCCCCCcHHHHHHHHHHHHhCCceeeeeccCCCCH
Q psy12256 12 LIAPGFIDIQINGGFGVDFSHDIDSVDKNVSIVARGILAHGVTSFCPTLVTSEP 65 (417)
Q Consensus 12 ~v~PG~ID~H~H~~~g~~~~~~~~~~~~~~~~~~~~~~~~GvTt~~~~~~~~~~ 65 (417)
+-+|--||+|+|...+ . . ..++...++ .++|+++++..+.|.
T Consensus 5 ~~~~~~~d~h~hl~~~----~-~---~~~~~~~~~----~~~t~~v~mPnt~P~ 46 (345)
T PRK05451 5 LTIRRPDDWHLHLRDG----A-M---LKAVVPYTA----RQFGRAIVMPNLVPP 46 (345)
T ss_pred EEecCcceEEEecCCc----h-H---HHHHHHHHH----HhcCEEEECCCCCCC
Confidence 4467789999998743 1 0 113333333 569999988766544
No 146
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=73.33 E-value=70 Score=28.81 Aligned_cols=111 Identities=15% Similarity=0.215 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHhCCceeeeeccCCCCHHHHHHHHHHHHcCCCCCCCceeEEeeeeCCCCCCCCCCCCCCcccCCCcHHH
Q psy12256 38 DKNVSIVARGILAHGVTSFCPTLVTSEPQVYKKVLSRLRKTPGGKHGATVLGAHVEGPFISPDKKGAHSLSKIVTFDKGF 117 (417)
Q Consensus 38 ~~~~~~~~~~~~~~GvTt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~leGp~~~~~~~G~~~~~~~~~~~~~~ 117 (417)
.+.....++++.++|++.+==|..+ +. -.+.++.+++.. . ..+.|.. .-+ ++ +.+
T Consensus 15 ~~~a~~ia~al~~gGi~~iEit~~t-p~--a~~~I~~l~~~~---~-~~~vGAG---TVl--------------~~-e~a 69 (201)
T PRK06015 15 VEHAVPLARALAAGGLPAIEITLRT-PA--ALDAIRAVAAEV---E-EAIVGAG---TIL--------------NA-KQF 69 (201)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCC-cc--HHHHHHHHHHHC---C-CCEEeeE---eCc--------------CH-HHH
Confidence 5678889999999999976544332 21 224444444332 1 1233321 111 11 234
Q ss_pred HHHHHHhCCCCCEEEEEecCCCCChHHHHHHHHHCCCeeeecCCcCCHHHHHHHHHCCCCeEeeCC
Q psy12256 118 DSVREVYGNLSNIAIITLAPELAGSMEVIDKLVEQGITVSLGHSSADINIAEEAVRHGASLITHLF 183 (417)
Q Consensus 118 ~~~~~~~g~~~~ik~~~~~pe~~~~~~~i~~~~~~gi~v~~GH~~~~~~~~~~a~~~G~~~i~Hl~ 183 (417)
++..+ +|. ++ .++|.+. .++++.++++|+...-|= .+..|+..+.++|++.+--+.
T Consensus 70 ~~ai~-aGA-~F----ivSP~~~--~~vi~~a~~~~i~~iPG~--~TptEi~~A~~~Ga~~vK~FP 125 (201)
T PRK06015 70 EDAAK-AGS-RF----IVSPGTT--QELLAAANDSDVPLLPGA--ATPSEVMALREEGYTVLKFFP 125 (201)
T ss_pred HHHHH-cCC-CE----EECCCCC--HHHHHHHHHcCCCEeCCC--CCHHHHHHHHHCCCCEEEECC
Confidence 45444 343 33 4788866 589999999999886653 468999999999998776544
No 147
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=72.52 E-value=40 Score=30.97 Aligned_cols=114 Identities=17% Similarity=0.292 Sum_probs=58.1
Q ss_pred HHHHHHHHHhCCceeeeeccCCCCHHHHHHHHHHHHcCCCCCCCceeEEeeeeCCCCCCCCCCCCCCcccCCCcHHHHHH
Q psy12256 41 VSIVARGILAHGVTSFCPTLVTSEPQVYKKVLSRLRKTPGGKHGATVLGAHVEGPFISPDKKGAHSLSKIVTFDKGFDSV 120 (417)
Q Consensus 41 ~~~~~~~~~~~GvTt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~leGp~~~~~~~G~~~~~~~~~~~~~~~~~ 120 (417)
.+...+.+.+.|+..+.=+.-+.. ..+.+.++.+++. ....|+-+- | . .+.+.++.+
T Consensus 77 p~~~i~~~~~~Gad~itvH~ea~~-~~~~~~l~~ik~~------G~~~gval~-p------------~---t~~e~l~~~ 133 (228)
T PTZ00170 77 PEKWVDDFAKAGASQFTFHIEATE-DDPKAVARKIREA------GMKVGVAIK-P------------K---TPVEVLFPL 133 (228)
T ss_pred HHHHHHHHHHcCCCEEEEeccCCc-hHHHHHHHHHHHC------CCeEEEEEC-C------------C---CCHHHHHHH
Confidence 344557777888876654443322 2255666666553 134454431 1 0 111334444
Q ss_pred HHHhCCCCCEEEEEecCCCCC------hHHHHHHHHHC--CCeeee-cCCcCCHHHHHHHHHCCCCeEe
Q psy12256 121 REVYGNLSNIAIITLAPELAG------SMEVIDKLVEQ--GITVSL-GHSSADINIAEEAVRHGASLIT 180 (417)
Q Consensus 121 ~~~~g~~~~ik~~~~~pe~~~------~~~~i~~~~~~--gi~v~~-GH~~~~~~~~~~a~~~G~~~i~ 180 (417)
.+. ...+.+.++++.|...+ ..+.++++++. ...+.+ |-. +.+.+..++++|++.+-
T Consensus 134 l~~-~~vD~Vl~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~I~VdGGI--~~~ti~~~~~aGad~iV 199 (228)
T PTZ00170 134 IDT-DLVDMVLVMTVEPGFGGQSFMHDMMPKVRELRKRYPHLNIQVDGGI--NLETIDIAADAGANVIV 199 (228)
T ss_pred Hcc-chhhhHHhhhcccCCCCcEecHHHHHHHHHHHHhcccCeEEECCCC--CHHHHHHHHHcCCCEEE
Confidence 311 12334556677776432 23455666554 233333 333 46778888888987663
No 148
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=70.97 E-value=64 Score=29.35 Aligned_cols=90 Identities=23% Similarity=0.280 Sum_probs=57.4
Q ss_pred EEEEEecCCCCChHHHHHHHHHC-----CCeeeecCCcCCHHHHHHHHHCCCCeEeeCCCCcccccccCCceEEeecCCC
Q psy12256 130 IAIITLAPELAGSMEVIDKLVEQ-----GITVSLGHSSADINIAEEAVRHGASLITHLFNAMLPFHHRDPGIIGLLSSDN 204 (417)
Q Consensus 130 ik~~~~~pe~~~~~~~i~~~~~~-----gi~v~~GH~~~~~~~~~~a~~~G~~~i~Hl~~~~~~~~~r~~g~~~~~~~~~ 204 (417)
++.+-++=-.+...+.|+.++++ ++.+..| +--+.+++++++++|++.+-- |
T Consensus 39 i~~iEit~~~~~a~~~i~~l~~~~~~~p~~~vGaG-TV~~~~~~~~a~~aGA~Fivs------------P---------- 95 (213)
T PRK06552 39 IKAIEVTYTNPFASEVIKELVELYKDDPEVLIGAG-TVLDAVTARLAILAGAQFIVS------------P---------- 95 (213)
T ss_pred CCEEEEECCCccHHHHHHHHHHHcCCCCCeEEeee-eCCCHHHHHHHHHcCCCEEEC------------C----------
Confidence 55543332234456788887654 2566665 447899999999999854431 0
Q ss_pred CCCCceEEEEecCCCcCCHHHHHHHHhhC-CCCCCCCCHHHHHHHHHccceeee
Q psy12256 205 IDSSKVYYGIIADGVHTHPSALRIANSTH-PEGHSSADIHIAEEAVRHGASLIT 257 (417)
Q Consensus 205 l~~~~~~~~~i~dg~h~~~~~~~~~~~~~-~~~h~~~~~e~~~~a~~~g~~~~t 257 (417)
++.|+.++.+.+.. ..-....+.+|+.+|.+.|+.++.
T Consensus 96 ---------------~~~~~v~~~~~~~~i~~iPG~~T~~E~~~A~~~Gad~vk 134 (213)
T PRK06552 96 ---------------SFNRETAKICNLYQIPYLPGCMTVTEIVTALEAGSEIVK 134 (213)
T ss_pred ---------------CCCHHHHHHHHHcCCCEECCcCCHHHHHHHHHcCCCEEE
Confidence 12356666666542 333445678999999999988774
No 149
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=70.90 E-value=65 Score=29.18 Aligned_cols=110 Identities=20% Similarity=0.223 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHhCCceeeeeccCCCCHHHHHHHHHHHHcCCCCCCCceeEEeeeeCCCCCCCCCCCCCCcccCCCcHHH
Q psy12256 38 DKNVSIVARGILAHGVTSFCPTLVTSEPQVYKKVLSRLRKTPGGKHGATVLGAHVEGPFISPDKKGAHSLSKIVTFDKGF 117 (417)
Q Consensus 38 ~~~~~~~~~~~~~~GvTt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~leGp~~~~~~~G~~~~~~~~~~~~~~ 117 (417)
.+.....++++..+|++++==|..+.... ++++.+.+.. . ..+.| .|--++ | +-+
T Consensus 24 ~e~a~~~a~Ali~gGi~~IEITl~sp~a~---e~I~~l~~~~---p-~~lIG---AGTVL~--------------~-~q~ 78 (211)
T COG0800 24 VEEALPLAKALIEGGIPAIEITLRTPAAL---EAIRALAKEF---P-EALIG---AGTVLN--------------P-EQA 78 (211)
T ss_pred HHHHHHHHHHHHHcCCCeEEEecCCCCHH---HHHHHHHHhC---c-ccEEc---cccccC--------------H-HHH
Confidence 56778889999999999886555544332 2333333332 1 12222 222222 1 224
Q ss_pred HHHHHHhCCCCCEEEEEecCCCCChHHHHHHHHHCCCeeeecCCcCCHHHHHHHHHCCCCeEeeC
Q psy12256 118 DSVREVYGNLSNIAIITLAPELAGSMEVIDKLVEQGITVSLGHSSADINIAEEAVRHGASLITHL 182 (417)
Q Consensus 118 ~~~~~~~g~~~~ik~~~~~pe~~~~~~~i~~~~~~gi~v~~GH~~~~~~~~~~a~~~G~~~i~Hl 182 (417)
++..+ +|. ++ -++|... .++++.++.+|+.+.-|= .+..|+..+.++|++.+.-+
T Consensus 79 ~~a~~-aGa-~f----iVsP~~~--~ev~~~a~~~~ip~~PG~--~TptEi~~Ale~G~~~lK~F 133 (211)
T COG0800 79 RQAIA-AGA-QF----IVSPGLN--PEVAKAANRYGIPYIPGV--ATPTEIMAALELGASALKFF 133 (211)
T ss_pred HHHHH-cCC-CE----EECCCCC--HHHHHHHHhCCCcccCCC--CCHHHHHHHHHcChhheeec
Confidence 44444 343 33 3678876 589999999999987663 46889999999998666543
No 150
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=70.36 E-value=30 Score=31.02 Aligned_cols=89 Identities=21% Similarity=0.274 Sum_probs=54.6
Q ss_pred EEEEEecCCCCChHHHHHHHHHC--CCeeeecCCcCCHHHHHHHHHCCCCeEeeCCCCcccccccCCceEEeecCCCCCC
Q psy12256 130 IAIITLAPELAGSMEVIDKLVEQ--GITVSLGHSSADINIAEEAVRHGASLITHLFNAMLPFHHRDPGIIGLLSSDNIDS 207 (417)
Q Consensus 130 ik~~~~~pe~~~~~~~i~~~~~~--gi~v~~GH~~~~~~~~~~a~~~G~~~i~Hl~~~~~~~~~r~~g~~~~~~~~~l~~ 207 (417)
++.+-++=..+...+.|+.++++ ++.+..|-. -+.+++++++++|++.+---
T Consensus 34 i~~iEiT~~t~~a~~~I~~l~~~~p~~~vGAGTV-~~~e~a~~a~~aGA~FivSP------------------------- 87 (196)
T PF01081_consen 34 IRAIEITLRTPNALEAIEALRKEFPDLLVGAGTV-LTAEQAEAAIAAGAQFIVSP------------------------- 87 (196)
T ss_dssp --EEEEETTSTTHHHHHHHHHHHHTTSEEEEES---SHHHHHHHHHHT-SEEEES-------------------------
T ss_pred CCEEEEecCCccHHHHHHHHHHHCCCCeeEEEec-cCHHHHHHHHHcCCCEEECC-------------------------
Confidence 66665543334556777766654 677776544 78999999999998544320
Q ss_pred CceEEEEecCCCcCCHHHHHHHHhhC-CCCCCCCCHHHHHHHHHccceee
Q psy12256 208 SKVYYGIIADGVHTHPSALRIANSTH-PEGHSSADIHIAEEAVRHGASLI 256 (417)
Q Consensus 208 ~~~~~~~i~dg~h~~~~~~~~~~~~~-~~~h~~~~~e~~~~a~~~g~~~~ 256 (417)
+++|+.++.+.+.. ..-....+..|+..|++.|+..+
T Consensus 88 ------------~~~~~v~~~~~~~~i~~iPG~~TptEi~~A~~~G~~~v 125 (196)
T PF01081_consen 88 ------------GFDPEVIEYAREYGIPYIPGVMTPTEIMQALEAGADIV 125 (196)
T ss_dssp ------------S--HHHHHHHHHHTSEEEEEESSHHHHHHHHHTT-SEE
T ss_pred ------------CCCHHHHHHHHHcCCcccCCcCCHHHHHHHHHCCCCEE
Confidence 22467777766653 33344577889999999998876
No 151
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=70.04 E-value=85 Score=28.36 Aligned_cols=111 Identities=18% Similarity=0.217 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHhCCceeeeeccCCCCHHHHHHHHHHHHcCCCCCCCceeEEeeeeCCCCCCCCCCCCCCcccCCCcHHH
Q psy12256 38 DKNVSIVARGILAHGVTSFCPTLVTSEPQVYKKVLSRLRKTPGGKHGATVLGAHVEGPFISPDKKGAHSLSKIVTFDKGF 117 (417)
Q Consensus 38 ~~~~~~~~~~~~~~GvTt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~leGp~~~~~~~G~~~~~~~~~~~~~~ 117 (417)
.+.....++++.++|++.+-=|..+.. -.+.++.+++.. . ..+.|.. .-+ ++ +.+
T Consensus 19 ~e~a~~~~~al~~~Gi~~iEit~~t~~---a~~~i~~l~~~~---~-~~~vGAG---TVl--------------~~-~~a 73 (204)
T TIGR01182 19 VDDALPLAKALIEGGLRVLEVTLRTPV---ALDAIRLLRKEV---P-DALIGAG---TVL--------------NP-EQL 73 (204)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcc---HHHHHHHHHHHC---C-CCEEEEE---eCC--------------CH-HHH
Confidence 667888899999999997754443322 223444444332 1 1233321 111 11 334
Q ss_pred HHHHHHhCCCCCEEEEEecCCCCChHHHHHHHHHCCCeeeecCCcCCHHHHHHHHHCCCCeEeeCC
Q psy12256 118 DSVREVYGNLSNIAIITLAPELAGSMEVIDKLVEQGITVSLGHSSADINIAEEAVRHGASLITHLF 183 (417)
Q Consensus 118 ~~~~~~~g~~~~ik~~~~~pe~~~~~~~i~~~~~~gi~v~~GH~~~~~~~~~~a~~~G~~~i~Hl~ 183 (417)
++..+ +|. ++ -++|... .++++.++++|+...-|= .+..|+..|.++|++.+--+.
T Consensus 74 ~~a~~-aGA-~F----ivsP~~~--~~v~~~~~~~~i~~iPG~--~TptEi~~A~~~Ga~~vKlFP 129 (204)
T TIGR01182 74 RQAVD-AGA-QF----IVSPGLT--PELAKHAQDHGIPIIPGV--ATPSEIMLALELGITALKLFP 129 (204)
T ss_pred HHHHH-cCC-CE----EECCCCC--HHHHHHHHHcCCcEECCC--CCHHHHHHHHHCCCCEEEECC
Confidence 55555 343 34 3788865 589999999999886653 468899999999998776544
No 152
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=69.41 E-value=80 Score=29.35 Aligned_cols=60 Identities=20% Similarity=0.252 Sum_probs=38.9
Q ss_pred HHHHHHhCCCCCEEEE------EecCCCCChHHHHHHHHHCCCeee-ecCCcCCHHHHHHHHHCCCCeE
Q psy12256 118 DSVREVYGNLSNIAII------TLAPELAGSMEVIDKLVEQGITVS-LGHSSADINIAEEAVRHGASLI 179 (417)
Q Consensus 118 ~~~~~~~g~~~~ik~~------~~~pe~~~~~~~i~~~~~~gi~v~-~GH~~~~~~~~~~a~~~G~~~i 179 (417)
.++....++.++||+= ++-|+.....++.+++.+.|..+. + +..+...++...+.|++.+
T Consensus 82 a~lare~~~~~~iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~vlpy--c~dd~~~ar~l~~~G~~~v 148 (248)
T cd04728 82 ARLAREALGTDWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFTVLPY--CTDDPVLAKRLEDAGCAAV 148 (248)
T ss_pred HHHHHHHhCCCeEEEEEecCccccccCHHHHHHHHHHHHHCCCEEEEE--eCCCHHHHHHHHHcCCCEe
Confidence 4444555567788863 223333333455666666699876 4 4467889999888999888
No 153
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=69.33 E-value=9.5 Score=35.06 Aligned_cols=38 Identities=32% Similarity=0.386 Sum_probs=34.1
Q ss_pred HHHHHHHHHCCCeeeecCCcCCHHHHHHHHHCCCCeEee
Q psy12256 143 MEVIDKLVEQGITVSLGHSSADINIAEEAVRHGASLITH 181 (417)
Q Consensus 143 ~~~i~~~~~~gi~v~~GH~~~~~~~~~~a~~~G~~~i~H 181 (417)
..+++.+++.||+||+ -..++.+++..+.+.|++.++=
T Consensus 113 ~~~i~~l~~~gI~VSL-FiDP~~~qi~~A~~~GAd~VEL 150 (237)
T TIGR00559 113 CELVKRFHAAGIEVSL-FIDADKDQISAAAEVGADRIEI 150 (237)
T ss_pred HHHHHHHHHCCCEEEE-EeCCCHHHHHHHHHhCcCEEEE
Confidence 4779999999999999 6778999999999999998875
No 154
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=68.10 E-value=10 Score=34.72 Aligned_cols=38 Identities=32% Similarity=0.402 Sum_probs=34.2
Q ss_pred HHHHHHHHHCCCeeeecCCcCCHHHHHHHHHCCCCeEee
Q psy12256 143 MEVIDKLVEQGITVSLGHSSADINIAEEAVRHGASLITH 181 (417)
Q Consensus 143 ~~~i~~~~~~gi~v~~GH~~~~~~~~~~a~~~G~~~i~H 181 (417)
..+++.+++.||+||+ -..++.+++..+.+.|++.++=
T Consensus 113 ~~~i~~l~~~gI~VSL-FiDPd~~qi~~A~~~GAd~VEL 150 (234)
T cd00003 113 KPIIERLKDAGIRVSL-FIDPDPEQIEAAKEVGADRVEL 150 (234)
T ss_pred HHHHHHHHHCCCEEEE-EeCCCHHHHHHHHHhCcCEEEE
Confidence 4779999999999999 6779999999999999998875
No 155
>COG0854 PdxJ Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]
Probab=67.85 E-value=8.9 Score=34.75 Aligned_cols=39 Identities=31% Similarity=0.347 Sum_probs=34.6
Q ss_pred hHHHHHHHHHCCCeeeecCCcCCHHHHHHHHHCCCCeEee
Q psy12256 142 SMEVIDKLVEQGITVSLGHSSADINIAEEAVRHGASLITH 181 (417)
Q Consensus 142 ~~~~i~~~~~~gi~v~~GH~~~~~~~~~~a~~~G~~~i~H 181 (417)
..+++++++..|++||+ ...++.+++..+.+.|++.|+-
T Consensus 113 l~~~v~~L~~~GirVSL-FiD~d~~qi~aa~~~gA~~IEL 151 (243)
T COG0854 113 LRDAVRRLKNAGIRVSL-FIDPDPEQIEAAAEVGAPRIEL 151 (243)
T ss_pred HHHHHHHHHhCCCeEEE-EeCCCHHHHHHHHHhCCCEEEE
Confidence 35889999999999999 6778999999999999998875
No 156
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=67.48 E-value=65 Score=28.68 Aligned_cols=114 Identities=18% Similarity=0.182 Sum_probs=64.9
Q ss_pred HHHHHHHhCCceeeeeccCCCCHHHHHHHHHHHHcCCCCCCCceeEEeeeeCCCCCCCCCCCCCCcccCCCc-HHHHHHH
Q psy12256 43 IVARGILAHGVTSFCPTLVTSEPQVYKKVLSRLRKTPGGKHGATVLGAHVEGPFISPDKKGAHSLSKIVTFD-KGFDSVR 121 (417)
Q Consensus 43 ~~~~~~~~~GvTt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~leGp~~~~~~~G~~~~~~~~~~~-~~~~~~~ 121 (417)
.++++...+|-..++.- ..++++. +++.. ..-+.|+.= +.-.+.+.+-+|+ ++++.+.
T Consensus 3 ~mA~Aa~~gGA~giR~~----~~~dI~a----ik~~v----~lPIIGi~K---------~~y~~~~V~ITPT~~ev~~l~ 61 (192)
T PF04131_consen 3 RMAKAAEEGGAVGIRAN----GVEDIRA----IKKAV----DLPIIGIIK---------RDYPDSDVYITPTLKEVDALA 61 (192)
T ss_dssp HHHHHHHHCT-SEEEEE----SHHHHHH----HHTTB-----S-EEEE-B----------SBTTSS--BS-SHHHHHHHH
T ss_pred HHHHHHHHCCceEEEcC----CHHHHHH----HHHhc----CCCEEEEEe---------ccCCCCCeEECCCHHHHHHHH
Confidence 56788889999998742 3455543 33332 133446432 2222445677888 7888888
Q ss_pred HHhCCCCCEEEE-Ee--cCCCCChHHHHHHHHHCCCeeeecCCcCCHHHHHHHHHCCCCeEeeCC
Q psy12256 122 EVYGNLSNIAII-TL--APELAGSMEVIDKLVEQGITVSLGHSSADINIAEEAVRHGASLITHLF 183 (417)
Q Consensus 122 ~~~g~~~~ik~~-~~--~pe~~~~~~~i~~~~~~gi~v~~GH~~~~~~~~~~a~~~G~~~i~Hl~ 183 (417)
+. | .+.|.+= |. .| ....+++++.++++..+.. -. ++++++..+.+.|+|.+.-..
T Consensus 62 ~a-G-adIIAlDaT~R~Rp--~~l~~li~~i~~~~~l~MA-Di-st~ee~~~A~~~G~D~I~TTL 120 (192)
T PF04131_consen 62 EA-G-ADIIALDATDRPRP--ETLEELIREIKEKYQLVMA-DI-STLEEAINAAELGFDIIGTTL 120 (192)
T ss_dssp HC-T--SEEEEE-SSSS-S--S-HHHHHHHHHHCTSEEEE-E--SSHHHHHHHHHTT-SEEE-TT
T ss_pred Hc-C-CCEEEEecCCCCCC--cCHHHHHHHHHHhCcEEee-ec-CCHHHHHHHHHcCCCEEEccc
Confidence 74 4 2333221 11 24 3357899999999955553 45 689999999999999986643
No 157
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=67.37 E-value=11 Score=34.70 Aligned_cols=38 Identities=34% Similarity=0.373 Sum_probs=34.1
Q ss_pred HHHHHHHHHCCCeeeecCCcCCHHHHHHHHHCCCCeEee
Q psy12256 143 MEVIDKLVEQGITVSLGHSSADINIAEEAVRHGASLITH 181 (417)
Q Consensus 143 ~~~i~~~~~~gi~v~~GH~~~~~~~~~~a~~~G~~~i~H 181 (417)
..+++++++.||+||+ -..++.+++..+.+.|++.++=
T Consensus 116 ~~~i~~L~~~gIrVSL-FidP~~~qi~~A~~~GAd~VEL 153 (239)
T PRK05265 116 KPAIARLKDAGIRVSL-FIDPDPEQIEAAAEVGADRIEL 153 (239)
T ss_pred HHHHHHHHHCCCEEEE-EeCCCHHHHHHHHHhCcCEEEE
Confidence 4779999999999999 6779999999999999998875
No 158
>PRK00208 thiG thiazole synthase; Reviewed
Probab=67.15 E-value=78 Score=29.48 Aligned_cols=60 Identities=15% Similarity=0.223 Sum_probs=37.8
Q ss_pred HHHHHHhCCCCCEEEEEe------cCCCCChHHHHHHHHHCCCeee-ecCCcCCHHHHHHHHHCCCCeE
Q psy12256 118 DSVREVYGNLSNIAIITL------APELAGSMEVIDKLVEQGITVS-LGHSSADINIAEEAVRHGASLI 179 (417)
Q Consensus 118 ~~~~~~~g~~~~ik~~~~------~pe~~~~~~~i~~~~~~gi~v~-~GH~~~~~~~~~~a~~~G~~~i 179 (417)
.++.....+.++||+=-+ -|+.....++.+++.+.|..+. + +..+...++...+.|++.+
T Consensus 82 a~lare~~~~~~iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~vlpy--c~~d~~~ak~l~~~G~~~v 148 (250)
T PRK00208 82 ARLAREALGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPY--CTDDPVLAKRLEEAGCAAV 148 (250)
T ss_pred HHHHHHHhCCCeEEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEEEEE--eCCCHHHHHHHHHcCCCEe
Confidence 444444556678886322 2222223455555555699876 4 4467888998888999888
No 159
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=66.81 E-value=87 Score=28.44 Aligned_cols=89 Identities=13% Similarity=0.177 Sum_probs=55.7
Q ss_pred EEEEEecCCCCChHHHHHHHHHC--CCeeeecCCcCCHHHHHHHHHCCCCeEeeCCCCcccccccCCceEEeecCCCCCC
Q psy12256 130 IAIITLAPELAGSMEVIDKLVEQ--GITVSLGHSSADINIAEEAVRHGASLITHLFNAMLPFHHRDPGIIGLLSSDNIDS 207 (417)
Q Consensus 130 ik~~~~~pe~~~~~~~i~~~~~~--gi~v~~GH~~~~~~~~~~a~~~G~~~i~Hl~~~~~~~~~r~~g~~~~~~~~~l~~ 207 (417)
++++-+.=..+...+.|+.+++. ++.+..| +--+.++++.++++|++.+.-..
T Consensus 41 i~~iEitl~~~~~~~~I~~l~~~~p~~~IGAG-TVl~~~~a~~a~~aGA~FivsP~------------------------ 95 (212)
T PRK05718 41 LPVLEVTLRTPAALEAIRLIAKEVPEALIGAG-TVLNPEQLAQAIEAGAQFIVSPG------------------------ 95 (212)
T ss_pred CCEEEEecCCccHHHHHHHHHHHCCCCEEEEe-eccCHHHHHHHHHcCCCEEECCC------------------------
Confidence 44443332223456778887765 4555554 43667899999999986665411
Q ss_pred CceEEEEecCCCcCCHHHHHHHHhhC-CCCCCCCCHHHHHHHHHccceee
Q psy12256 208 SKVYYGIIADGVHTHPSALRIANSTH-PEGHSSADIHIAEEAVRHGASLI 256 (417)
Q Consensus 208 ~~~~~~~i~dg~h~~~~~~~~~~~~~-~~~h~~~~~e~~~~a~~~g~~~~ 256 (417)
++++.++.+.+.. ..-....+..|+.+|.+.|+..+
T Consensus 96 -------------~~~~vi~~a~~~~i~~iPG~~TptEi~~a~~~Ga~~v 132 (212)
T PRK05718 96 -------------LTPPLLKAAQEGPIPLIPGVSTPSELMLGMELGLRTF 132 (212)
T ss_pred -------------CCHHHHHHHHHcCCCEeCCCCCHHHHHHHHHCCCCEE
Confidence 1356666666542 22234466778999999998876
No 160
>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D ....
Probab=66.16 E-value=10 Score=34.93 Aligned_cols=38 Identities=34% Similarity=0.386 Sum_probs=30.8
Q ss_pred HHHHHHHHHCCCeeeecCCcCCHHHHHHHHHCCCCeEee
Q psy12256 143 MEVIDKLVEQGITVSLGHSSADINIAEEAVRHGASLITH 181 (417)
Q Consensus 143 ~~~i~~~~~~gi~v~~GH~~~~~~~~~~a~~~G~~~i~H 181 (417)
..+++++++.||+||+ -..++.+++..|.+.|++.++=
T Consensus 114 ~~~i~~L~~~gIrvSL-FiDP~~~qi~~A~~~Gad~VEL 151 (239)
T PF03740_consen 114 KPVIKRLKDAGIRVSL-FIDPDPEQIEAAKELGADRVEL 151 (239)
T ss_dssp HHHHHHHHHTT-EEEE-EE-S-HHHHHHHHHTT-SEEEE
T ss_pred HHHHHHHHhCCCEEEE-EeCCCHHHHHHHHHcCCCEEEE
Confidence 5889999999999999 6778999999999999998875
No 161
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=65.47 E-value=63 Score=33.46 Aligned_cols=131 Identities=17% Similarity=0.272 Sum_probs=68.9
Q ss_pred HHHHHHHHHHhCCceeeeeccCCCCHHHHHHHHHHHHcCCCCCCCceeEE-eeeeCCCCCCCCCCCCCCcccCCCcHHHH
Q psy12256 40 NVSIVARGILAHGVTSFCPTLVTSEPQVYKKVLSRLRKTPGGKHGATVLG-AHVEGPFISPDKKGAHSLSKIVTFDKGFD 118 (417)
Q Consensus 40 ~~~~~~~~~~~~GvTt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G-~~leGp~~~~~~~G~~~~~~~~~~~~~~~ 118 (417)
-.+...+...++|+..|+=+.-.+....+..+++.+++.. ....+ +...+ ++ .++.+++. +..+
T Consensus 98 vv~~fv~~a~~~Gidi~RIfd~lndv~nl~~ai~~vk~ag-----~~~~~~i~yt~---sp----~~t~e~~~---~~a~ 162 (499)
T PRK12330 98 VVDRFVEKSAENGMDVFRVFDALNDPRNLEHAMKAVKKVG-----KHAQGTICYTV---SP----IHTVEGFV---EQAK 162 (499)
T ss_pred HHHHHHHHHHHcCCCEEEEEecCChHHHHHHHHHHHHHhC-----CeEEEEEEEec---CC----CCCHHHHH---HHHH
Confidence 4566677788899998874433444455666666665542 12211 22221 11 12222211 1223
Q ss_pred HHHHHhCCCCCEEEEEecCCC--CChHHHHHHHHHC---CCeeeec-CCcC--CHHHHHHHHHCCCCeEeeCCCCcc
Q psy12256 119 SVREVYGNLSNIAIITLAPEL--AGSMEVIDKLVEQ---GITVSLG-HSSA--DINIAEEAVRHGASLITHLFNAML 187 (417)
Q Consensus 119 ~~~~~~g~~~~ik~~~~~pe~--~~~~~~i~~~~~~---gi~v~~G-H~~~--~~~~~~~a~~~G~~~i~Hl~~~~~ 187 (417)
++.+ .| .+.|.+-..+--. ..+.+.++.+++. ++.+.++ |... .......|+++|++.+.-..++|.
T Consensus 163 ~l~~-~G-ad~I~IkDtaGll~P~~~~~LV~~Lk~~~~~~ipI~~H~Hnt~GlA~An~laAieAGad~vDtai~Glg 237 (499)
T PRK12330 163 RLLD-MG-ADSICIKDMAALLKPQPAYDIVKGIKEACGEDTRINLHCHSTTGVTLVSLMKAIEAGVDVVDTAISSMS 237 (499)
T ss_pred HHHH-cC-CCEEEeCCCccCCCHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCcHHHHHHHHHHcCCCEEEeeccccc
Confidence 3333 34 2333332222111 1345777777775 4666663 5542 244667899999999998887774
No 162
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=65.25 E-value=1.1e+02 Score=27.83 Aligned_cols=111 Identities=12% Similarity=0.111 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHhCCceeeeeccCCCCHHHHHHHHHHHHcCCCCCCC-ceeEEeeeeCCCCCCCCCCCCCCcccCCCcHH
Q psy12256 38 DKNVSIVARGILAHGVTSFCPTLVTSEPQVYKKVLSRLRKTPGGKHG-ATVLGAHVEGPFISPDKKGAHSLSKIVTFDKG 116 (417)
Q Consensus 38 ~~~~~~~~~~~~~~GvTt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~G~~leGp~~~~~~~G~~~~~~~~~~~~~ 116 (417)
.+.....++++.++|++.+==|..+.. -.+.++.+++... .. .-++|.. .-+ ++ +.
T Consensus 24 ~~~a~~~~~al~~~Gi~~iEit~~~~~---a~~~i~~l~~~~~--~~p~~~vGaG---TV~--------------~~-~~ 80 (213)
T PRK06552 24 KEEALKISLAVIKGGIKAIEVTYTNPF---ASEVIKELVELYK--DDPEVLIGAG---TVL--------------DA-VT 80 (213)
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCCcc---HHHHHHHHHHHcC--CCCCeEEeee---eCC--------------CH-HH
Confidence 667888999999999997754443322 2234444443221 11 1233421 111 11 23
Q ss_pred HHHHHHHhCCCCCEEEEEecCCCCChHHHHHHHHHCCCeeeecCCcCCHHHHHHHHHCCCCeEee
Q psy12256 117 FDSVREVYGNLSNIAIITLAPELAGSMEVIDKLVEQGITVSLGHSSADINIAEEAVRHGASLITH 181 (417)
Q Consensus 117 ~~~~~~~~g~~~~ik~~~~~pe~~~~~~~i~~~~~~gi~v~~GH~~~~~~~~~~a~~~G~~~i~H 181 (417)
+++..+ +|. ++ -++|.+. .++++.++++|+...-|= .+..++.++.++|++.+--
T Consensus 81 ~~~a~~-aGA-~F----ivsP~~~--~~v~~~~~~~~i~~iPG~--~T~~E~~~A~~~Gad~vkl 135 (213)
T PRK06552 81 ARLAIL-AGA-QF----IVSPSFN--RETAKICNLYQIPYLPGC--MTVTEIVTALEAGSEIVKL 135 (213)
T ss_pred HHHHHH-cCC-CE----EECCCCC--HHHHHHHHHcCCCEECCc--CCHHHHHHHHHcCCCEEEE
Confidence 444444 343 33 4688765 589999999999886662 3478899999999988773
No 163
>KOG3111|consensus
Probab=60.66 E-value=1.3e+02 Score=27.01 Aligned_cols=53 Identities=21% Similarity=0.386 Sum_probs=33.3
Q ss_pred CCCEEEEEecCCCCC------hHHHHHHHHHCCCeeee---cCCcCCHHHHHHHHHCCCCeEee
Q psy12256 127 LSNIAIITLAPELAG------SMEVIDKLVEQGITVSL---GHSSADINIAEEAVRHGASLITH 181 (417)
Q Consensus 127 ~~~ik~~~~~pe~~~------~~~~i~~~~~~gi~v~~---GH~~~~~~~~~~a~~~G~~~i~H 181 (417)
.+.+.+||+.|..-+ .+.-+++++++.-..-+ |- -..+.+..+.++|++.+--
T Consensus 135 ~D~vLvMtVePGFGGQkFme~mm~KV~~lR~kyp~l~ievDGG--v~~~ti~~~a~AGAN~iVa 196 (224)
T KOG3111|consen 135 VDMVLVMTVEPGFGGQKFMEDMMPKVEWLREKYPNLDIEVDGG--VGPSTIDKAAEAGANMIVA 196 (224)
T ss_pred ccEEEEEEecCCCchhhhHHHHHHHHHHHHHhCCCceEEecCC--cCcchHHHHHHcCCCEEEe
Confidence 467789999997522 34667788865432222 22 2356666788889877654
No 164
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=59.93 E-value=1.4e+02 Score=27.33 Aligned_cols=63 Identities=14% Similarity=0.291 Sum_probs=38.1
Q ss_pred HHHHHHHHHhCCCCCEEEEEecCCCCC------hHHHHHHHHHC----C--CeeeecCCcCCHHHHHHHHHCCCCeEee
Q psy12256 115 KGFDSVREVYGNLSNIAIITLAPELAG------SMEVIDKLVEQ----G--ITVSLGHSSADINIAEEAVRHGASLITH 181 (417)
Q Consensus 115 ~~~~~~~~~~g~~~~ik~~~~~pe~~~------~~~~i~~~~~~----g--i~v~~GH~~~~~~~~~~a~~~G~~~i~H 181 (417)
+.++.+... .+.|.+||+.|.-.+ ..+-++++++. + ..+.+.-. -+.+.+.+..++|++.+--
T Consensus 124 ~~i~~~l~~---vD~VlvMtV~PGf~GQ~fi~~~l~KI~~l~~~~~~~~~~~~IeVDGG-I~~eti~~l~~aGaDi~V~ 198 (223)
T PRK08745 124 DILDWVLPE---LDLVLVMSVNPGFGGQAFIPSALDKLRAIRKKIDALGKPIRLEIDGG-VKADNIGAIAAAGADTFVA 198 (223)
T ss_pred HHHHHHHhh---cCEEEEEEECCCCCCccccHHHHHHHHHHHHHHHhcCCCeeEEEECC-CCHHHHHHHHHcCCCEEEE
Confidence 445555553 567899999997422 23445554443 3 33444322 3578888888999876643
No 165
>PRK12999 pyruvate carboxylase; Reviewed
Probab=59.52 E-value=1.3e+02 Score=34.89 Aligned_cols=139 Identities=18% Similarity=0.222 Sum_probs=74.7
Q ss_pred HHHHHHHHHhCCceeeeeccCCCCHHHHHHHHHHHHcCCCCCCCceeEEeeeeCCCCCCCCCCCCCCcccCCCcHHHHHH
Q psy12256 41 VSIVARGILAHGVTSFCPTLVTSEPQVYKKVLSRLRKTPGGKHGATVLGAHVEGPFISPDKKGAHSLSKIVTFDKGFDSV 120 (417)
Q Consensus 41 ~~~~~~~~~~~GvTt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~leGp~~~~~~~G~~~~~~~~~~~~~~~~~ 120 (417)
.+.+.+...++|+..|+=+...+..+.+..+.+..++. .......+..+|-.+++.. ..++.+++. +..+++
T Consensus 629 ~~~~i~~a~~~Gid~~rifd~lnd~~~~~~~i~~vk~~----g~~~~~~i~ytg~~~d~~~-~~~~~~~~~---~~a~~l 700 (1146)
T PRK12999 629 VRAFVREAAAAGIDVFRIFDSLNWVENMRVAIDAVRET----GKIAEAAICYTGDILDPAR-AKYDLDYYV---DLAKEL 700 (1146)
T ss_pred HHHHHHHHHHcCCCEEEEeccCChHHHHHHHHHHHHHc----CCeEEEEEEEEecCCCCCC-CCCCHHHHH---HHHHHH
Confidence 44457788999999988543333344555555555443 1112234566776555443 223333222 122333
Q ss_pred HHHhCCCCCEEEEEecCCC--CChHHHHHHHHHC-CCeeeec-CCcCC--HHHHHHHHHCCCCeEeeCCCCcccc
Q psy12256 121 REVYGNLSNIAIITLAPEL--AGSMEVIDKLVEQ-GITVSLG-HSSAD--INIAEEAVRHGASLITHLFNAMLPF 189 (417)
Q Consensus 121 ~~~~g~~~~ik~~~~~pe~--~~~~~~i~~~~~~-gi~v~~G-H~~~~--~~~~~~a~~~G~~~i~Hl~~~~~~~ 189 (417)
.+ +| .+.|.+-..+--. ..+.+.++.+++. ++.+.++ |.... ......|+++|++.+.-..++|.+.
T Consensus 701 ~~-~G-a~~i~ikDt~G~l~P~~~~~lv~~lk~~~~ipi~~H~Hnt~Gla~an~laA~~aGad~vD~av~glg~~ 773 (1146)
T PRK12999 701 EK-AG-AHILAIKDMAGLLKPAAAYELVSALKEEVDLPIHLHTHDTSGNGLATYLAAAEAGVDIVDVAVASMSGL 773 (1146)
T ss_pred HH-cC-CCEEEECCccCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCchHHHHHHHHHHhCCCEEEecchhhcCC
Confidence 33 34 2333332222111 1245667777664 6666653 55432 3356788999999999988877643
No 166
>cd01311 PDC_hydrolase 2-pyrone-4,6-dicarboxylic acid (PDC) hydrolase hydrolyzes PDC to yield 4-oxalomesaconic acid (OMA) or its tautomer, 4-carboxy-2-hydroxymuconic acid (CHM). This reaction is part of the protocatechuate (PCA) 4,5-cleavage pathway. PCA is one of the most important intermediate metabolites in the bacterial pathways for various phenolic compounds, including lignin, which is the most abundant aromatic material in nature.
Probab=59.15 E-value=1.5e+02 Score=27.51 Aligned_cols=20 Identities=20% Similarity=0.174 Sum_probs=16.0
Q ss_pred hHHHHHHHHHCCCeeeecCCc
Q psy12256 142 SMEVIDKLVEQGITVSLGHSS 162 (417)
Q Consensus 142 ~~~~i~~~~~~gi~v~~GH~~ 162 (417)
..+.++.+.++|..+.+ |+.
T Consensus 112 ~~~~~~~~~~~gl~v~~-~~~ 131 (263)
T cd01311 112 LDEIAKRAAELGWHVQV-YFD 131 (263)
T ss_pred HHHHHHHHHHcCCEEEE-EeC
Confidence 35788889999999988 664
No 167
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=56.66 E-value=2e+02 Score=29.58 Aligned_cols=132 Identities=20% Similarity=0.242 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHhCCceeeeeccCCCCHHHHHHHHHHHHcCCCCCCCcee-EEeeeeCCCCCCCCCCCCCCcccCCCcHHH
Q psy12256 39 KNVSIVARGILAHGVTSFCPTLVTSEPQVYKKVLSRLRKTPGGKHGATV-LGAHVEGPFISPDKKGAHSLSKIVTFDKGF 117 (417)
Q Consensus 39 ~~~~~~~~~~~~~GvTt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~leGp~~~~~~~G~~~~~~~~~~~~~~ 117 (417)
+-++.+.+...++|+..|+-+.--+..+.+...++..++. +... ..+..++ ++ .++.+++. +..
T Consensus 105 dvv~~fv~~a~~~Gidi~Rifd~lnd~~n~~~ai~~ak~~-----G~~~~~~i~yt~---sp----~~t~~y~~---~~a 169 (468)
T PRK12581 105 DIVDKFISLSAQNGIDVFRIFDALNDPRNIQQALRAVKKT-----GKEAQLCIAYTT---SP----VHTLNYYL---SLV 169 (468)
T ss_pred hHHHHHHHHHHHCCCCEEEEcccCCCHHHHHHHHHHHHHc-----CCEEEEEEEEEe---CC----cCcHHHHH---HHH
Confidence 3366678888899999998654444556666666665553 1111 2222222 11 11211111 123
Q ss_pred HHHHHHhCCCCCEEEEEecCCC--CChHHHHHHHHHC-CCeeeec-CCcC--CHHHHHHHHHCCCCeEeeCCCCcc
Q psy12256 118 DSVREVYGNLSNIAIITLAPEL--AGSMEVIDKLVEQ-GITVSLG-HSSA--DINIAEEAVRHGASLITHLFNAML 187 (417)
Q Consensus 118 ~~~~~~~g~~~~ik~~~~~pe~--~~~~~~i~~~~~~-gi~v~~G-H~~~--~~~~~~~a~~~G~~~i~Hl~~~~~ 187 (417)
+++.+ +| .+.|.+-..+--. ..+.+.++.+++. ++.+.++ |... .......|+++|++.+.-..+.|.
T Consensus 170 ~~l~~-~G-ad~I~IkDtaG~l~P~~v~~Lv~alk~~~~~pi~~H~Hnt~GlA~An~laAieAGad~vD~ai~g~g 243 (468)
T PRK12581 170 KELVE-MG-ADSICIKDMAGILTPKAAKELVSGIKAMTNLPLIVHTHATSGISQMTYLAAVEAGADRIDTALSPFS 243 (468)
T ss_pred HHHHH-cC-CCEEEECCCCCCcCHHHHHHHHHHHHhccCCeEEEEeCCCCccHHHHHHHHHHcCCCEEEeeccccC
Confidence 33333 34 2333332222111 1235667777664 4555552 6553 244667899999999888776554
No 168
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=56.63 E-value=1.6e+02 Score=28.04 Aligned_cols=125 Identities=14% Similarity=0.087 Sum_probs=60.0
Q ss_pred HHHHHHhCCceeeeeccCCCCHH-HHHHHHHHHHcCCCCCCCceeEEeeeeC--CCCCCCCCCC---CCCcccCCCcHHH
Q psy12256 44 VARGILAHGVTSFCPTLVTSEPQ-VYKKVLSRLRKTPGGKHGATVLGAHVEG--PFISPDKKGA---HSLSKIVTFDKGF 117 (417)
Q Consensus 44 ~~~~~~~~GvTt~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~G~~leG--p~~~~~~~G~---~~~~~~~~~~~~~ 117 (417)
..+.+++.|.||+.=-...-|.+ .++...+..+-+ .-.|+.+|| ..+....-+. .....+.+| ++.
T Consensus 87 ~i~~ai~~GFtSVM~DgS~lp~eeNi~~T~~vv~~A-------h~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~p-eea 158 (282)
T TIGR01858 87 DIRQKVHAGVRSAMIDGSHFPFAQNVKLVKEVVDFC-------HRQDCSVEAELGRLGGVEDDLSVDEEDALYTDP-QEA 158 (282)
T ss_pred HHHHHHHcCCCEEeecCCCCCHHHHHHHHHHHHHHH-------HHcCCeEEEEEEecCCccCCCccccchhccCCH-HHH
Confidence 35667899999997222333433 444333333222 223444443 1221111110 011224445 456
Q ss_pred HHHHHHhCCCCCEEE--------EEecCCCCChHHHHHHHHHC-CCeeee-cCCcCCHHHHHHHHHCCCCeE
Q psy12256 118 DSVREVYGNLSNIAI--------ITLAPELAGSMEVIDKLVEQ-GITVSL-GHSSADINIAEEAVRHGASLI 179 (417)
Q Consensus 118 ~~~~~~~g~~~~ik~--------~~~~pe~~~~~~~i~~~~~~-gi~v~~-GH~~~~~~~~~~a~~~G~~~i 179 (417)
.+|.+.-| .|.+.+ +.-.|.+. .+.++++++. +++..+ |-|..+.++.+++++.|+.-+
T Consensus 159 ~~Fv~~Tg-vD~LAvaiGt~HG~yk~~p~Ld--f~~L~~I~~~~~iPLVlHGgSG~~~e~~~~ai~~Gi~Ki 227 (282)
T TIGR01858 159 KEFVEATG-VDSLAVAIGTAHGLYKKTPKLD--FDRLAEIREVVDVPLVLHGASDVPDEDVRRTIELGICKV 227 (282)
T ss_pred HHHHHHHC-cCEEecccCccccCcCCCCccC--HHHHHHHHHHhCCCeEEecCCCCCHHHHHHHHHcCCeEE
Confidence 66666543 344432 12235443 3455554443 665555 333345778999999997444
No 169
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=56.22 E-value=1.7e+02 Score=27.87 Aligned_cols=125 Identities=15% Similarity=0.130 Sum_probs=59.5
Q ss_pred HHHHHHhCCceeeeeccCCCCHH-HHHHHHHHHHcCCCCCCCceeEEeeeeCC--CCCCCCCC---CCCCcccCCCcHHH
Q psy12256 44 VARGILAHGVTSFCPTLVTSEPQ-VYKKVLSRLRKTPGGKHGATVLGAHVEGP--FISPDKKG---AHSLSKIVTFDKGF 117 (417)
Q Consensus 44 ~~~~~~~~GvTt~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~G~~leGp--~~~~~~~G---~~~~~~~~~~~~~~ 117 (417)
..+.+++.|.||+.=-...-|.+ .++...+..+-+ .-+|+.+||- .+....-+ ......+.+| ++.
T Consensus 89 ~i~~ai~~GFtSVM~DgS~lp~eeNi~~T~evv~~A-------h~~gv~VEaElG~igg~ed~~~~~~~~~~~T~p-eea 160 (286)
T PRK12738 89 DIRRKVHAGVRSAMIDGSHFPFAENVKLVKSVVDFC-------HSQDCSVEAELGRLGGVEDDMSVDAESAFLTDP-QEA 160 (286)
T ss_pred HHHHHHHcCCCeEeecCCCCCHHHHHHHHHHHHHHH-------HHcCCeEEEEEEeeCCccCCcccccchhcCCCH-HHH
Confidence 45567789999997222333443 444433333222 2234444431 22111111 0011224445 455
Q ss_pred HHHHHHhCCCCCEEEE--E------ecCCCCChHHHHHHHHHC-CCeeee-cCCcCCHHHHHHHHHCCCCeE
Q psy12256 118 DSVREVYGNLSNIAII--T------LAPELAGSMEVIDKLVEQ-GITVSL-GHSSADINIAEEAVRHGASLI 179 (417)
Q Consensus 118 ~~~~~~~g~~~~ik~~--~------~~pe~~~~~~~i~~~~~~-gi~v~~-GH~~~~~~~~~~a~~~G~~~i 179 (417)
.+|.+.-| .|.+.+- | -.|.++ .+.++++++. +++..+ |-|....++.+++++.|+.-+
T Consensus 161 ~~Fv~~Tg-vD~LAvaiGt~HG~Y~~~p~Ld--fd~l~~I~~~~~vPLVLHGgSG~~~e~~~kai~~GI~Ki 229 (286)
T PRK12738 161 KRFVELTG-VDSLAVAIGTAHGLYSKTPKID--FQRLAEIREVVDVPLVLHGASDVPDEFVRRTIELGVTKV 229 (286)
T ss_pred HHHHHHhC-CCEEEeccCcccCCCCCCCcCC--HHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHcCCeEE
Confidence 66666543 4544321 1 235543 3445544444 665545 333345778899999997444
No 170
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=55.54 E-value=1.7e+02 Score=26.84 Aligned_cols=89 Identities=20% Similarity=0.326 Sum_probs=56.7
Q ss_pred EEEEEecCCCCChHHHHHHHH----HC--CCeeeecCCcCCHHHHHHHHHCCCCeEeeCCCCcccccccCCceEEeecCC
Q psy12256 130 IAIITLAPELAGSMEVIDKLV----EQ--GITVSLGHSSADINIAEEAVRHGASLITHLFNAMLPFHHRDPGIIGLLSSD 203 (417)
Q Consensus 130 ik~~~~~pe~~~~~~~i~~~~----~~--gi~v~~GH~~~~~~~~~~a~~~G~~~i~Hl~~~~~~~~~r~~g~~~~~~~~ 203 (417)
|+.+-++=..+...+.|+.+. +. ++.+..| +--+.+++++++++|++.+-- |
T Consensus 41 i~~iEiT~~tp~a~~~i~~l~~~~~~~~p~~~vGaG-TVl~~e~a~~a~~aGA~FiVs------------P--------- 98 (222)
T PRK07114 41 ARVFEFTNRGDFAHEVFAELVKYAAKELPGMILGVG-SIVDAATAALYIQLGANFIVT------------P--------- 98 (222)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHHHHhhCCCeEEeeE-eCcCHHHHHHHHHcCCCEEEC------------C---------
Confidence 555544333344566776664 22 2566665 446899999999999754322 0
Q ss_pred CCCCCceEEEEecCCCcCCHHHHHHHHhhC-CCCCCCCCHHHHHHHHHccceee
Q psy12256 204 NIDSSKVYYGIIADGVHTHPSALRIANSTH-PEGHSSADIHIAEEAVRHGASLI 256 (417)
Q Consensus 204 ~l~~~~~~~~~i~dg~h~~~~~~~~~~~~~-~~~h~~~~~e~~~~a~~~g~~~~ 256 (417)
+++|+.++.+.+.. ..-....+..|+..|++.|+..+
T Consensus 99 ----------------~~~~~v~~~~~~~~i~~iPG~~TpsEi~~A~~~Ga~~v 136 (222)
T PRK07114 99 ----------------LFNPDIAKVCNRRKVPYSPGCGSLSEIGYAEELGCEIV 136 (222)
T ss_pred ----------------CCCHHHHHHHHHcCCCEeCCCCCHHHHHHHHHCCCCEE
Confidence 22366777666642 33355678899999999998876
No 171
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=55.22 E-value=84 Score=34.31 Aligned_cols=139 Identities=17% Similarity=0.215 Sum_probs=80.1
Q ss_pred HHHHHHHHHHhCCceeeeeccCCCCHHHHHHHHHHHHcCCCCCCCceeEEeeeeCCCCCCCCCCCCCCcccCCCcHHHHH
Q psy12256 40 NVSIVARGILAHGVTSFCPTLVTSEPQVYKKVLSRLRKTPGGKHGATVLGAHVEGPFISPDKKGAHSLSKIVTFDKGFDS 119 (417)
Q Consensus 40 ~~~~~~~~~~~~GvTt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~leGp~~~~~~~G~~~~~~~~~~~~~~~~ 119 (417)
-+..+.++..++||--|+=+..-+--+.++-+++++++.- .-.-..+..+|..+++.++-- +-+++. +..++
T Consensus 631 Vi~~Fvkqaa~~GIDvFRiFDsLNwv~~M~vaidAV~e~g----kv~EatiCYTGDildp~r~kY-~L~YY~---~lA~e 702 (1149)
T COG1038 631 VIREFVKQAAKSGIDVFRIFDSLNWVEQMRVAIDAVREAG----KVAEATICYTGDILDPGRKKY-TLDYYV---KLAKE 702 (1149)
T ss_pred HHHHHHHHHHhcCccEEEeehhhcchhhhhhHHHHHHhcC----CeEEEEEEeccccCCCCcccc-cHHHHH---HHHHH
Confidence 3678889999999998874322233456666666665541 111223566888887765321 111111 12233
Q ss_pred HHHHhCCCCCE-EEEEecCCCC--ChHHHHHHHHHC-CCeeeecCCc--C--CHHHHHHHHHCCCCeEeeCCCCccccc
Q psy12256 120 VREVYGNLSNI-AIITLAPELA--GSMEVIDKLVEQ-GITVSLGHSS--A--DINIAEEAVRHGASLITHLFNAMLPFH 190 (417)
Q Consensus 120 ~~~~~g~~~~i-k~~~~~pe~~--~~~~~i~~~~~~-gi~v~~GH~~--~--~~~~~~~a~~~G~~~i~Hl~~~~~~~~ 190 (417)
+. ..|. +| .+-.++.-+. .+..++..+++. ++++++ |+- + .......|+++|+|.+.-..+.|++..
T Consensus 703 l~-~~Ga--HIlaIKDMAGLLKP~AA~~Li~aLr~~~dlPIHl-HTHDTsG~~~at~~aA~~AGvDivD~A~~smsG~T 777 (1149)
T COG1038 703 LE-KAGA--HILAIKDMAGLLKPAAAYRLISALRETVDLPIHL-HTHDTSGNGVATYLAAVEAGVDIVDVAMASMSGLT 777 (1149)
T ss_pred HH-hcCC--cEEEehhhhhccCHHHHHHHHHHHHHhcCCceEE-eccCCCccHHHHHHHHHHcCCchhhhhhhhccCCC
Confidence 33 3342 34 3323343332 345777777765 677776 443 2 133456788999999999888888654
No 172
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=54.18 E-value=1.6e+02 Score=26.61 Aligned_cols=109 Identities=23% Similarity=0.265 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHhCCceeeeeccCCCCHHHHHHHHHHHHcCCCCCCCceeEEeeeeCCCCCCCCCCCCCCcccCCCcHHH
Q psy12256 38 DKNVSIVARGILAHGVTSFCPTLVTSEPQVYKKVLSRLRKTPGGKHGATVLGAHVEGPFISPDKKGAHSLSKIVTFDKGF 117 (417)
Q Consensus 38 ~~~~~~~~~~~~~~GvTt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~leGp~~~~~~~G~~~~~~~~~~~~~~ 117 (417)
.+.....++++.++|++.+==+. .++ + -.+.++.+.+.. ......|. |..++ + +.+
T Consensus 21 ~~~~~~~~~a~~~gGi~~iEvt~-~~~-~-~~~~i~~l~~~~---~~~~~iGa---GTV~~--------------~-~~~ 76 (206)
T PRK09140 21 PDEALAHVGALIEAGFRAIEIPL-NSP-D-PFDSIAALVKAL---GDRALIGA---GTVLS--------------P-EQV 76 (206)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeC-CCc-c-HHHHHHHHHHHc---CCCcEEeE---EecCC--------------H-HHH
Confidence 66788889999999999764332 222 1 223444444332 11123342 21221 1 223
Q ss_pred HHHHHHhCCCCCEEEEEecCCCCChHHHHHHHHHCCCeeeecCCcCCHHHHHHHHHCCCCeEe
Q psy12256 118 DSVREVYGNLSNIAIITLAPELAGSMEVIDKLVEQGITVSLGHSSADINIAEEAVRHGASLIT 180 (417)
Q Consensus 118 ~~~~~~~g~~~~ik~~~~~pe~~~~~~~i~~~~~~gi~v~~GH~~~~~~~~~~a~~~G~~~i~ 180 (417)
+...+ +| .++ -+.|..+ .+.++.+++.|+.+..| . .+.+++.++.++|++.+.
T Consensus 77 ~~a~~-aG-A~f----ivsp~~~--~~v~~~~~~~~~~~~~G-~-~t~~E~~~A~~~Gad~vk 129 (206)
T PRK09140 77 DRLAD-AG-GRL----IVTPNTD--PEVIRRAVALGMVVMPG-V-ATPTEAFAALRAGAQALK 129 (206)
T ss_pred HHHHH-cC-CCE----EECCCCC--HHHHHHHHHCCCcEEcc-c-CCHHHHHHHHHcCCCEEE
Confidence 34333 34 233 3557655 47888899999988777 2 457889999999998887
No 173
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=52.30 E-value=90 Score=32.08 Aligned_cols=46 Identities=20% Similarity=0.324 Sum_probs=31.0
Q ss_pred hHHHHHHHHHC-CCeeeec-CCcC--CHHHHHHHHHCCCCeEeeCCCCcc
Q psy12256 142 SMEVIDKLVEQ-GITVSLG-HSSA--DINIAEEAVRHGASLITHLFNAML 187 (417)
Q Consensus 142 ~~~~i~~~~~~-gi~v~~G-H~~~--~~~~~~~a~~~G~~~i~Hl~~~~~ 187 (417)
+.+.++.+++. ++.+.++ |... .......|+++|++.+.-..+.|.
T Consensus 184 v~~Lv~~lk~~~~vpI~~H~Hnt~GlA~AN~laAieaGad~vD~sv~~~g 233 (467)
T PRK14041 184 AYELVKALKKKFGVPVEVHSHCTTGLASLAYLAAVEAGADMFDTAISPFS 233 (467)
T ss_pred HHHHHHHHHHhcCCceEEEecCCCCcHHHHHHHHHHhCCCEEEeeccccC
Confidence 45677777654 5655552 5542 344677899999999988777664
No 174
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=51.42 E-value=2.2e+02 Score=27.10 Aligned_cols=125 Identities=14% Similarity=0.109 Sum_probs=59.4
Q ss_pred HHHHHHhCCceeeeeccCCCCH-HHHHHHHHHHHcCCCCCCCceeEEeeeeC--CCCCCCCCCC---CCCcccCCCcHHH
Q psy12256 44 VARGILAHGVTSFCPTLVTSEP-QVYKKVLSRLRKTPGGKHGATVLGAHVEG--PFISPDKKGA---HSLSKIVTFDKGF 117 (417)
Q Consensus 44 ~~~~~~~~GvTt~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~G~~leG--p~~~~~~~G~---~~~~~~~~~~~~~ 117 (417)
.++.+++.|.||+.=-...-|. +.++...+..+-+ .-.|+.+|+ ..+....-+. .....+.+| ++.
T Consensus 89 ~i~~Ai~~GftSVM~DgS~l~~eeNi~~T~~vv~~A-------h~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~p-eea 160 (284)
T PRK09195 89 DIAQKVRSGVRSVMIDGSHLPFAQNISLVKEVVDFC-------HRFDVSVEAELGRLGGQEDDLQVDEADALYTDP-AQA 160 (284)
T ss_pred HHHHHHHcCCCEEEeCCCCCCHHHHHHHHHHHHHHH-------HHcCCEEEEEEecccCcccCcccccccccCCCH-HHH
Confidence 4666778999999722223343 3444333333222 223444432 1221111110 011223444 456
Q ss_pred HHHHHHhCCCCCEEE--------EEecCCCCChHHHHHHHHHC-CCeeee-cCCcCCHHHHHHHHHCCCCeE
Q psy12256 118 DSVREVYGNLSNIAI--------ITLAPELAGSMEVIDKLVEQ-GITVSL-GHSSADINIAEEAVRHGASLI 179 (417)
Q Consensus 118 ~~~~~~~g~~~~ik~--------~~~~pe~~~~~~~i~~~~~~-gi~v~~-GH~~~~~~~~~~a~~~G~~~i 179 (417)
.+|.+.-| .|.+.+ +.-.|.++ .+.++++++. +++..+ |-|.-..++.+++++.|+.-+
T Consensus 161 ~~Fv~~Tg-vD~LAvaiGt~HG~y~~~p~Ld--~~~L~~I~~~~~vPLVLHGgSG~~~e~~~~ai~~Gi~Ki 229 (284)
T PRK09195 161 REFVEATG-IDSLAVAIGTAHGMYKGEPKLD--FDRLENIRQWVNIPLVLHGASGLPTKDIQQTIKLGICKV 229 (284)
T ss_pred HHHHHHHC-cCEEeeccCccccccCCCCcCC--HHHHHHHHHHhCCCeEEecCCCCCHHHHHHHHHcCCeEE
Confidence 66666544 344422 12235443 3444544443 565544 333345678999999997544
No 175
>COG1735 Php Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=51.18 E-value=2e+02 Score=27.71 Aligned_cols=25 Identities=8% Similarity=0.034 Sum_probs=20.4
Q ss_pred hhccCCCHHHHHHHHhHHHHHHcCC
Q psy12256 357 MRSTRCSLVHALEVASLHPAKALGL 381 (417)
Q Consensus 357 ~~~~~~~~~~~l~~~t~~pA~~l~l 381 (417)
.++.|++-+++=+|.-.||+++|..
T Consensus 290 Lk~~Gvde~~i~~mlvdNP~r~f~~ 314 (316)
T COG1735 290 LKRHGVDEETIDTMLVDNPARLFTA 314 (316)
T ss_pred HHHcCCCHHHHHHHHhhCHHHHhcc
Confidence 3456999788888889999999875
No 176
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=51.12 E-value=2.3e+02 Score=27.51 Aligned_cols=108 Identities=17% Similarity=0.178 Sum_probs=61.6
Q ss_pred HHHHHHHhCCCCCEEEEEecCCC----CCh---HHHHHHHHHCCCee-eecCCcCCHHHHHHHHHCCCCeEeeCCCCccc
Q psy12256 117 FDSVREVYGNLSNIAIITLAPEL----AGS---MEVIDKLVEQGITV-SLGHSSADINIAEEAVRHGASLITHLFNAMLP 188 (417)
Q Consensus 117 ~~~~~~~~g~~~~ik~~~~~pe~----~~~---~~~i~~~~~~gi~v-~~GH~~~~~~~~~~a~~~G~~~i~Hl~~~~~~ 188 (417)
..++.+..++.++||+ -+-||. +.. .++.+++.+.|..+ .+ +..+...++...+.|+..+..+
T Consensus 155 ~a~lare~~~~~~iKl-Evi~e~~~llpd~~~~v~aa~~L~~~Gf~v~~y--c~~d~~~a~~l~~~g~~avmPl------ 225 (326)
T PRK11840 155 TLRLAREAGGWDLVKL-EVLGDAKTLYPDMVETLKATEILVKEGFQVMVY--CSDDPIAAKRLEDAGAVAVMPL------ 225 (326)
T ss_pred HHHHHHHhcCCCeEEE-EEcCCCCCcccCHHHHHHHHHHHHHCCCEEEEE--eCCCHHHHHHHHhcCCEEEeec------
Confidence 3445555566778886 333332 223 45555555559988 54 4467888888888887333221
Q ss_pred ccccCCceEEeecCCCCCCCceEEEEecCCCcC-CHHHHHHHHhhCC----CCCCCCCHHHHHHHHHccceee
Q psy12256 189 FHHRDPGIIGLLSSDNIDSSKVYYGIIADGVHT-HPSALRIANSTHP----EGHSSADIHIAEEAVRHGASLI 256 (417)
Q Consensus 189 ~~~r~~g~~~~~~~~~l~~~~~~~~~i~dg~h~-~~~~~~~~~~~~~----~~h~~~~~e~~~~a~~~g~~~~ 256 (417)
.++|.-|.-+ .|+.++......+ .+=...+.+++..|++-|+.-+
T Consensus 226 -----------------------~~pIGsg~gv~~p~~i~~~~e~~~vpVivdAGIg~~sda~~AmelGadgV 275 (326)
T PRK11840 226 -----------------------GAPIGSGLGIQNPYTIRLIVEGATVPVLVDAGVGTASDAAVAMELGCDGV 275 (326)
T ss_pred -----------------------cccccCCCCCCCHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHcCCCEE
Confidence 2223332223 4677776655421 1122355788888998887754
No 177
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=51.04 E-value=2e+02 Score=26.36 Aligned_cols=114 Identities=13% Similarity=0.104 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHhCCceeeeeccCCCCHHHHHHHHHHHHcCCCCCCCc-eeEEeeeeCCCCCCCCCCCCCCcccCCCcHH
Q psy12256 38 DKNVSIVARGILAHGVTSFCPTLVTSEPQVYKKVLSRLRKTPGGKHGA-TVLGAHVEGPFISPDKKGAHSLSKIVTFDKG 116 (417)
Q Consensus 38 ~~~~~~~~~~~~~~GvTt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~G~~leGp~~~~~~~G~~~~~~~~~~~~~ 116 (417)
.+.....++++.++|++.+==|..+... .+.++.+++.... +.+ .++|.. .-+ ++ +.
T Consensus 26 ~~~a~~~~~al~~gGi~~iEiT~~tp~a---~~~i~~l~~~~~~-~~p~~~vGaG---TVl--------------~~-e~ 83 (222)
T PRK07114 26 VEVAKKVIKACYDGGARVFEFTNRGDFA---HEVFAELVKYAAK-ELPGMILGVG---SIV--------------DA-AT 83 (222)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCCCcH---HHHHHHHHHHHHh-hCCCeEEeeE---eCc--------------CH-HH
Confidence 5677888999999999976544433222 2233333211100 111 233321 111 11 23
Q ss_pred HHHHHHHhCCCCCEEEEEecCCCCChHHHHHHHHHCCCeeeecCCcCCHHHHHHHHHCCCCeEeeCC
Q psy12256 117 FDSVREVYGNLSNIAIITLAPELAGSMEVIDKLVEQGITVSLGHSSADINIAEEAVRHGASLITHLF 183 (417)
Q Consensus 117 ~~~~~~~~g~~~~ik~~~~~pe~~~~~~~i~~~~~~gi~v~~GH~~~~~~~~~~a~~~G~~~i~Hl~ 183 (417)
+++..+ +|. ++ .++|.+. .++++.++++|+...-|= .+..|+.+|.++|++.+--+.
T Consensus 84 a~~a~~-aGA-~F----iVsP~~~--~~v~~~~~~~~i~~iPG~--~TpsEi~~A~~~Ga~~vKlFP 140 (222)
T PRK07114 84 AALYIQ-LGA-NF----IVTPLFN--PDIAKVCNRRKVPYSPGC--GSLSEIGYAEELGCEIVKLFP 140 (222)
T ss_pred HHHHHH-cCC-CE----EECCCCC--HHHHHHHHHcCCCEeCCC--CCHHHHHHHHHCCCCEEEECc
Confidence 444444 343 33 4788866 589999999999886653 468999999999997765543
No 178
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=50.98 E-value=2e+02 Score=26.44 Aligned_cols=62 Identities=15% Similarity=0.266 Sum_probs=37.5
Q ss_pred HHHHHHHHHhCCCCCEEEEEecCCCCC------hHHHHHHHHH----CCCe--eeecCCcCCHHHHHHHHHCCCCeEe
Q psy12256 115 KGFDSVREVYGNLSNIAIITLAPELAG------SMEVIDKLVE----QGIT--VSLGHSSADINIAEEAVRHGASLIT 180 (417)
Q Consensus 115 ~~~~~~~~~~g~~~~ik~~~~~pe~~~------~~~~i~~~~~----~gi~--v~~GH~~~~~~~~~~a~~~G~~~i~ 180 (417)
+.++.+... .+.+.+||+.|.-.+ ..+-|+++++ +|.. +.+.-. -+.+.+.+..++|++.+-
T Consensus 132 ~~i~~~l~~---vD~VLiMtV~PGfgGQ~f~~~~l~KI~~lr~~~~~~~~~~~IeVDGG-I~~~ti~~l~~aGaD~~V 205 (228)
T PRK08091 132 SLLEPYLDQ---IDLIQILTLDPRTGTKAPSDLILDRVIQVENRLGNRRVEKLISIDGS-MTLELASYLKQHQIDWVV 205 (228)
T ss_pred HHHHHHHhh---cCEEEEEEECCCCCCccccHHHHHHHHHHHHHHHhcCCCceEEEECC-CCHHHHHHHHHCCCCEEE
Confidence 445555543 567899999997422 3344555443 3432 333222 357888889999998663
No 179
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=49.54 E-value=2.1e+02 Score=26.13 Aligned_cols=62 Identities=15% Similarity=0.358 Sum_probs=38.6
Q ss_pred HHHHHHHHHhCCCCCEEEEEecCCCCC------hHHHHHHHHHC----C--Cee-eecCCcCCHHHHHHHHHCCCCeEee
Q psy12256 115 KGFDSVREVYGNLSNIAIITLAPELAG------SMEVIDKLVEQ----G--ITV-SLGHSSADINIAEEAVRHGASLITH 181 (417)
Q Consensus 115 ~~~~~~~~~~g~~~~ik~~~~~pe~~~------~~~~i~~~~~~----g--i~v-~~GH~~~~~~~~~~a~~~G~~~i~H 181 (417)
+.++.+... .+.+.+|++.|..-+ ..+.++++++. | +.+ ..|-. +.+.+.+.+++|++.+.-
T Consensus 120 ~~i~~~l~~---~D~vlvMtV~PGfgGq~fi~~~lekI~~l~~~~~~~~~~~~I~vdGGI--~~eni~~l~~aGAd~vVv 194 (220)
T PRK08883 120 HHLEYIMDK---VDLILLMSVNPGFGGQSFIPHTLDKLRAVRKMIDESGRDIRLEIDGGV--KVDNIREIAEAGADMFVA 194 (220)
T ss_pred HHHHHHHHh---CCeEEEEEecCCCCCceecHhHHHHHHHHHHHHHhcCCCeeEEEECCC--CHHHHHHHHHcCCCEEEE
Confidence 455666553 467899999987522 23445555443 3 434 34544 378888888999877643
No 180
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=48.17 E-value=2.5e+02 Score=26.75 Aligned_cols=125 Identities=15% Similarity=0.123 Sum_probs=59.9
Q ss_pred HHHHHHhCCceeeeeccCCCCH-HHHHHHHHHHHcCCCCCCCceeEEeeeeC--CCCCCCCCC---CCCCcccCCCcHHH
Q psy12256 44 VARGILAHGVTSFCPTLVTSEP-QVYKKVLSRLRKTPGGKHGATVLGAHVEG--PFISPDKKG---AHSLSKIVTFDKGF 117 (417)
Q Consensus 44 ~~~~~~~~GvTt~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~G~~leG--p~~~~~~~G---~~~~~~~~~~~~~~ 117 (417)
..+.+++.|.||+.=-...-|. +.++...+..+-+ .-.|+.+|+ ..+....-+ ......+.+| ++.
T Consensus 89 ~i~~ai~~GftSVMiDgS~lp~eeNi~~T~~vv~~A-------h~~gvsVEaElG~igg~e~~~~~~~~~~~~T~p-eeA 160 (284)
T PRK12737 89 DIKKKVRAGIRSVMIDGSHLSFEENIAIVKEVVEFC-------HRYDASVEAELGRLGGQEDDLVVDEKDAMYTNP-DAA 160 (284)
T ss_pred HHHHHHHcCCCeEEecCCCCCHHHHHHHHHHHHHHH-------HHcCCEEEEEEeeccCccCCcccccccccCCCH-HHH
Confidence 4566789999999722223343 3444433333222 223444432 222111111 1111234445 456
Q ss_pred HHHHHHhCCCCCEEE--------EEecCCCCChHHHHHHHHHC-CCeeee-cCCcCCHHHHHHHHHCCCCeE
Q psy12256 118 DSVREVYGNLSNIAI--------ITLAPELAGSMEVIDKLVEQ-GITVSL-GHSSADINIAEEAVRHGASLI 179 (417)
Q Consensus 118 ~~~~~~~g~~~~ik~--------~~~~pe~~~~~~~i~~~~~~-gi~v~~-GH~~~~~~~~~~a~~~G~~~i 179 (417)
.+|.+.-| .|.+.+ +.-.|.++ .+.++++++. +++..+ |-|.-..++.+++++.|+.-+
T Consensus 161 ~~Fv~~Tg-vD~LAvaiGt~HG~y~~~p~Ld--~~~L~~I~~~~~iPLVlHGgSG~~~e~~~kai~~Gi~Ki 229 (284)
T PRK12737 161 AEFVERTG-IDSLAVAIGTAHGLYKGEPKLD--FERLAEIREKVSIPLVLHGASGVPDEDVKKAISLGICKV 229 (284)
T ss_pred HHHHHHhC-CCEEeeccCccccccCCCCcCC--HHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHCCCeEE
Confidence 66666543 344432 11234443 3455555553 565444 333345778999999997544
No 181
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=48.15 E-value=1.2e+02 Score=32.25 Aligned_cols=129 Identities=22% Similarity=0.297 Sum_probs=65.1
Q ss_pred HHHHHHHHHhCCceeeeeccCCCCHHHHHHHHHHHHcCCCCCCCceeEE-eee-eCCCCCCCCCCCCCCcccCCCcHHHH
Q psy12256 41 VSIVARGILAHGVTSFCPTLVTSEPQVYKKVLSRLRKTPGGKHGATVLG-AHV-EGPFISPDKKGAHSLSKIVTFDKGFD 118 (417)
Q Consensus 41 ~~~~~~~~~~~GvTt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G-~~l-eGp~~~~~~~G~~~~~~~~~~~~~~~ 118 (417)
.+...+...++|+..|.-....++...+....+..++. +..+.+ +.. .+|+ ++.+++. +..+
T Consensus 98 v~~~v~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~-----G~~v~~~i~~t~~p~--------~t~~~~~---~~a~ 161 (592)
T PRK09282 98 VEKFVEKAAENGIDIFRIFDALNDVRNMEVAIKAAKKA-----GAHVQGTISYTTSPV--------HTIEKYV---ELAK 161 (592)
T ss_pred hHHHHHHHHHCCCCEEEEEEecChHHHHHHHHHHHHHc-----CCEEEEEEEeccCCC--------CCHHHHH---HHHH
Confidence 45566777889999877443334444555555444432 222221 211 1221 1211111 2233
Q ss_pred HHHHHhCCCCCEEEEEecCCC--CChHHHHHHHHHC-CCeeeec-CCcC--CHHHHHHHHHCCCCeEeeCCCCcc
Q psy12256 119 SVREVYGNLSNIAIITLAPEL--AGSMEVIDKLVEQ-GITVSLG-HSSA--DINIAEEAVRHGASLITHLFNAML 187 (417)
Q Consensus 119 ~~~~~~g~~~~ik~~~~~pe~--~~~~~~i~~~~~~-gi~v~~G-H~~~--~~~~~~~a~~~G~~~i~Hl~~~~~ 187 (417)
++.+ .| .+.|.+-...--. ..+.+.++.+++. ++.+.++ |... .......|+++|++.+.-..+.|.
T Consensus 162 ~l~~-~G-ad~I~i~Dt~G~~~P~~~~~lv~~lk~~~~~pi~~H~Hnt~Gla~An~laAv~aGad~vD~ai~g~g 234 (592)
T PRK09282 162 ELEE-MG-CDSICIKDMAGLLTPYAAYELVKALKEEVDLPVQLHSHCTSGLAPMTYLKAVEAGVDIIDTAISPLA 234 (592)
T ss_pred HHHH-cC-CCEEEECCcCCCcCHHHHHHHHHHHHHhCCCeEEEEEcCCCCcHHHHHHHHHHhCCCEEEeeccccC
Confidence 4433 34 3333332222111 1245677777664 5555552 5553 244667899999999988887765
No 182
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=47.33 E-value=1.3e+02 Score=31.94 Aligned_cols=47 Identities=13% Similarity=0.287 Sum_probs=31.6
Q ss_pred hHHHHHHHHHC-CCeeeec-CCcCC--HHHHHHHHHCCCCeEeeCCCCccc
Q psy12256 142 SMEVIDKLVEQ-GITVSLG-HSSAD--INIAEEAVRHGASLITHLFNAMLP 188 (417)
Q Consensus 142 ~~~~i~~~~~~-gi~v~~G-H~~~~--~~~~~~a~~~G~~~i~Hl~~~~~~ 188 (417)
+.+.++.+++. ++.+.++ |.... ......|+++|++.+.-..++|..
T Consensus 186 ~~~lv~~lk~~~~~pi~~H~Hnt~GlA~An~laAieAGa~~vD~ai~glG~ 236 (593)
T PRK14040 186 AYELVSRIKKRVDVPLHLHCHATTGLSTATLLKAIEAGIDGVDTAISSMSM 236 (593)
T ss_pred HHHHHHHHHHhcCCeEEEEECCCCchHHHHHHHHHHcCCCEEEeccccccc
Confidence 35667766654 5555542 65532 335678999999999998887764
No 183
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=46.28 E-value=2.4e+02 Score=25.84 Aligned_cols=63 Identities=14% Similarity=0.323 Sum_probs=38.4
Q ss_pred HHHHHHHHHhCCCCCEEEEEecCCCCC------hHHHHHHHHHCC-----CeeeecCCcCCHHHHHHHHHCCCCeEee
Q psy12256 115 KGFDSVREVYGNLSNIAIITLAPELAG------SMEVIDKLVEQG-----ITVSLGHSSADINIAEEAVRHGASLITH 181 (417)
Q Consensus 115 ~~~~~~~~~~g~~~~ik~~~~~pe~~~------~~~~i~~~~~~g-----i~v~~GH~~~~~~~~~~a~~~G~~~i~H 181 (417)
+.++.+.+. .+.+.+||+.|..-+ ..+-++++++.- +.+-+.-. -+.+.+.++.++|++.+--
T Consensus 123 ~~i~~~l~~---vD~VllMsVnPGfgGQ~Fi~~~l~Ki~~lr~~~~~~~~~~IeVDGG-I~~~t~~~~~~AGad~~Va 196 (220)
T COG0036 123 EALEPVLDD---VDLVLLMSVNPGFGGQKFIPEVLEKIRELRAMIDERLDILIEVDGG-INLETIKQLAAAGADVFVA 196 (220)
T ss_pred HHHHHHHhh---CCEEEEEeECCCCcccccCHHHHHHHHHHHHHhcccCCeEEEEeCC-cCHHHHHHHHHcCCCEEEE
Confidence 456666654 467899999997522 345555555542 22333222 3577888888899876643
No 184
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=43.40 E-value=2.4e+02 Score=25.22 Aligned_cols=111 Identities=21% Similarity=0.254 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHhCCceeeeeccCCCCHHHHHHHHHHHHcCCCCCCCceeEEeeeeCCCCCCCCCCCCCCcccCCCcHHH
Q psy12256 38 DKNVSIVARGILAHGVTSFCPTLVTSEPQVYKKVLSRLRKTPGGKHGATVLGAHVEGPFISPDKKGAHSLSKIVTFDKGF 117 (417)
Q Consensus 38 ~~~~~~~~~~~~~~GvTt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~leGp~~~~~~~G~~~~~~~~~~~~~~ 117 (417)
.+.....++++.++|+..+==|..+.. -.+.++.+++.. . .-++|.. .-+ ++ +..
T Consensus 19 ~~~a~~~~~al~~gGi~~iEiT~~t~~---a~~~I~~l~~~~---p-~~~vGAG---TV~--------------~~-e~a 73 (196)
T PF01081_consen 19 PEDAVPIAEALIEGGIRAIEITLRTPN---ALEAIEALRKEF---P-DLLVGAG---TVL--------------TA-EQA 73 (196)
T ss_dssp GGGHHHHHHHHHHTT--EEEEETTSTT---HHHHHHHHHHHH---T-TSEEEEE---S----------------SH-HHH
T ss_pred HHHHHHHHHHHHHCCCCEEEEecCCcc---HHHHHHHHHHHC---C-CCeeEEE---ecc--------------CH-HHH
Confidence 456788899999999997654444322 234444444432 1 1233421 111 11 334
Q ss_pred HHHHHHhCCCCCEEEEEecCCCCChHHHHHHHHHCCCeeeecCCcCCHHHHHHHHHCCCCeEeeCC
Q psy12256 118 DSVREVYGNLSNIAIITLAPELAGSMEVIDKLVEQGITVSLGHSSADINIAEEAVRHGASLITHLF 183 (417)
Q Consensus 118 ~~~~~~~g~~~~ik~~~~~pe~~~~~~~i~~~~~~gi~v~~GH~~~~~~~~~~a~~~G~~~i~Hl~ 183 (417)
++..+. |. ++ -++|... .++++.++++|+...-|= .+..|+..|.++|++.+--+.
T Consensus 74 ~~a~~a-GA-~F----ivSP~~~--~~v~~~~~~~~i~~iPG~--~TptEi~~A~~~G~~~vK~FP 129 (196)
T PF01081_consen 74 EAAIAA-GA-QF----IVSPGFD--PEVIEYAREYGIPYIPGV--MTPTEIMQALEAGADIVKLFP 129 (196)
T ss_dssp HHHHHH-T--SE----EEESS----HHHHHHHHHHTSEEEEEE--SSHHHHHHHHHTT-SEEEETT
T ss_pred HHHHHc-CC-CE----EECCCCC--HHHHHHHHHcCCcccCCc--CCHHHHHHHHHCCCCEEEEec
Confidence 555553 43 33 4678765 589999999999886653 468999999999998776655
No 185
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=43.39 E-value=1.9e+02 Score=27.62 Aligned_cols=123 Identities=18% Similarity=0.175 Sum_probs=57.9
Q ss_pred HHHHHHhCCceeeeeccCCCCH-HHHHHHHHHHHcCCCCCCCceeEEeeeeC--CCCCCCCCCCCC----CcccCCCcHH
Q psy12256 44 VARGILAHGVTSFCPTLVTSEP-QVYKKVLSRLRKTPGGKHGATVLGAHVEG--PFISPDKKGAHS----LSKIVTFDKG 116 (417)
Q Consensus 44 ~~~~~~~~GvTt~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~G~~leG--p~~~~~~~G~~~----~~~~~~~~~~ 116 (417)
..+.+++.|.||+.=-...-|. +.++...+..+-+ .-.|+.+|| ..+...-.+... ...+.+| ++
T Consensus 88 ~i~~ai~~GftSVM~DgS~l~~eeNi~~T~~vv~~a-------h~~gv~VEaElG~i~g~ed~~~~~~~~~~~~TdP-~~ 159 (287)
T PF01116_consen 88 DIKRAIDAGFTSVMIDGSALPFEENIAITREVVEYA-------HAYGVSVEAELGHIGGKEDGIESEEETESLYTDP-EE 159 (287)
T ss_dssp HHHHHHHHTSSEEEEE-TTS-HHHHHHHHHHHHHHH-------HHTT-EEEEEESBSSSSCTTCSSSTT-TTCSSSH-HH
T ss_pred HHHHHHHhCcccccccCCcCCHHHHHHHHHHHHHhh-------hhhCCEEEEEeeeeeccCCCccccccccccccCH-HH
Confidence 3566778899999722223333 3444444333222 222344432 233211112211 2344455 45
Q ss_pred HHHHHHHhCCCCCEEEE--------Ee--cCCCCChHHHHHHHHHC--CCeeeecCCc--CCHHHHHHHHHCCCCe
Q psy12256 117 FDSVREVYGNLSNIAII--------TL--APELAGSMEVIDKLVEQ--GITVSLGHSS--ADINIAEEAVRHGASL 178 (417)
Q Consensus 117 ~~~~~~~~g~~~~ik~~--------~~--~pe~~~~~~~i~~~~~~--gi~v~~GH~~--~~~~~~~~a~~~G~~~ 178 (417)
..+|.+.-| .|.+.+- .- .|+++ .+.++++++. +++..+ |.. -..++.+++++.|+.-
T Consensus 160 a~~Fv~~Tg-vD~LAvaiGt~HG~y~~~~~p~Ld--~~~L~~I~~~~~~iPLVl-HGgSG~~~e~~~~ai~~Gi~K 231 (287)
T PF01116_consen 160 AKEFVEETG-VDALAVAIGTAHGMYKGGKKPKLD--FDRLKEIREAVPDIPLVL-HGGSGLPDEQIRKAIKNGISK 231 (287)
T ss_dssp HHHHHHHHT-TSEEEE-SSSBSSSBSSSSSTC----HHHHHHHHHHHHTSEEEE-SSCTTS-HHHHHHHHHTTEEE
T ss_pred HHHHHHHhC-CCEEEEecCccccccCCCCCcccC--HHHHHHHHHhcCCCCEEE-ECCCCCCHHHHHHHHHcCceE
Confidence 566666544 4554431 22 34432 3555555554 677666 443 4466889999998633
No 186
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=42.57 E-value=2.6e+02 Score=25.35 Aligned_cols=91 Identities=22% Similarity=0.238 Sum_probs=58.6
Q ss_pred EEEEEecCCCCChHHHHHHHHHCCCeeeec-CCcCCHHHHHHHHHCCCCeEeeCCCCcccccccCCceEEeecCCCCCCC
Q psy12256 130 IAIITLAPELAGSMEVIDKLVEQGITVSLG-HSSADINIAEEAVRHGASLITHLFNAMLPFHHRDPGIIGLLSSDNIDSS 208 (417)
Q Consensus 130 ik~~~~~pe~~~~~~~i~~~~~~gi~v~~G-H~~~~~~~~~~a~~~G~~~i~Hl~~~~~~~~~r~~g~~~~~~~~~l~~~ 208 (417)
++.+-+.=..+...+.|+.+.++--.+.+| -+--+.+++.+++++|++.+-- +
T Consensus 39 i~~IEITl~sp~a~e~I~~l~~~~p~~lIGAGTVL~~~q~~~a~~aGa~fiVs--------------------------P 92 (211)
T COG0800 39 IPAIEITLRTPAALEAIRALAKEFPEALIGAGTVLNPEQARQAIAAGAQFIVS--------------------------P 92 (211)
T ss_pred CCeEEEecCCCCHHHHHHHHHHhCcccEEccccccCHHHHHHHHHcCCCEEEC--------------------------C
Confidence 444433333345567888877762233344 2335688999999999744322 0
Q ss_pred ceEEEEecCCCcCCHHHHHHHHhhC-CCCCCCCCHHHHHHHHHccceeee
Q psy12256 209 KVYYGIIADGVHTHPSALRIANSTH-PEGHSSADIHIAEEAVRHGASLIT 257 (417)
Q Consensus 209 ~~~~~~i~dg~h~~~~~~~~~~~~~-~~~h~~~~~e~~~~a~~~g~~~~t 257 (417)
+++++.++.+.+.. ..-....+.-|+..|++.|+..+.
T Consensus 93 -----------~~~~ev~~~a~~~~ip~~PG~~TptEi~~Ale~G~~~lK 131 (211)
T COG0800 93 -----------GLNPEVAKAANRYGIPYIPGVATPTEIMAALELGASALK 131 (211)
T ss_pred -----------CCCHHHHHHHHhCCCcccCCCCCHHHHHHHHHcChhhee
Confidence 23567887777653 555667889999999999988663
No 187
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=42.24 E-value=3.1e+02 Score=26.12 Aligned_cols=123 Identities=17% Similarity=0.180 Sum_probs=58.6
Q ss_pred HHHHHhCCceeee-eccCCCCH-HHHHHHHHHHHcCCCCCCCceeEEeeeeC--CCCCCCCCCC---CCCcccCCCcHHH
Q psy12256 45 ARGILAHGVTSFC-PTLVTSEP-QVYKKVLSRLRKTPGGKHGATVLGAHVEG--PFISPDKKGA---HSLSKIVTFDKGF 117 (417)
Q Consensus 45 ~~~~~~~GvTt~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~G~~leG--p~~~~~~~G~---~~~~~~~~~~~~~ 117 (417)
.+.+++.|.||+. |. ..-|. +.++...+..+-+ .-.|+.+|+ ..+....-+. .....+.+| ++.
T Consensus 90 i~~ai~~GftSVM~Dg-S~lp~eeNi~~T~~vv~~A-------h~~gvsVEaElG~vgg~e~~~~~~~~~~~~T~p-e~a 160 (284)
T PRK12857 90 VMKCIRNGFTSVMIDG-SKLPLEENIALTKKVVEIA-------HAVGVSVEAELGKIGGTEDDITVDEREAAMTDP-EEA 160 (284)
T ss_pred HHHHHHcCCCeEEEeC-CCCCHHHHHHHHHHHHHHH-------HHcCCEEEEEeeecCCccCCCCcccchhhcCCH-HHH
Confidence 5567788999997 43 23343 3444444333222 223444432 1221111110 011224445 455
Q ss_pred HHHHHHhCCCCCEEE--------EEecCCCCChHHHHHHHHHC-CCeeee-cCCcCCHHHHHHHHHCCCCeE
Q psy12256 118 DSVREVYGNLSNIAI--------ITLAPELAGSMEVIDKLVEQ-GITVSL-GHSSADINIAEEAVRHGASLI 179 (417)
Q Consensus 118 ~~~~~~~g~~~~ik~--------~~~~pe~~~~~~~i~~~~~~-gi~v~~-GH~~~~~~~~~~a~~~G~~~i 179 (417)
.+|.+.-| .|.+.+ +.-.|++. .+.++++++. +++..+ |-|.-..++.+++++.|+.-+
T Consensus 161 ~~Fv~~Tg-vD~LAvaiGt~HG~y~~~p~Ld--~~~L~~i~~~~~vPLVlHGgSG~~~e~~~~ai~~Gi~Ki 229 (284)
T PRK12857 161 RRFVEETG-VDALAIAIGTAHGPYKGEPKLD--FDRLAKIKELVNIPIVLHGSSGVPDEAIRKAISLGVRKV 229 (284)
T ss_pred HHHHHHHC-CCEEeeccCccccccCCCCcCC--HHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHcCCeEE
Confidence 66665433 344432 12235543 3455555544 554444 333345678899999997544
No 188
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=41.69 E-value=2.1e+02 Score=29.25 Aligned_cols=46 Identities=15% Similarity=0.322 Sum_probs=30.7
Q ss_pred hHHHHHHHHHC-CCeeeec-CCcC--CHHHHHHHHHCCCCeEeeCCCCcc
Q psy12256 142 SMEVIDKLVEQ-GITVSLG-HSSA--DINIAEEAVRHGASLITHLFNAML 187 (417)
Q Consensus 142 ~~~~i~~~~~~-gi~v~~G-H~~~--~~~~~~~a~~~G~~~i~Hl~~~~~ 187 (417)
+.+.++.+++. ++.+.++ |... .......|+++|++.+.-..+.|.
T Consensus 185 v~~lv~alk~~~~~pi~~H~Hnt~GlA~AN~laAieaGad~vD~sv~glg 234 (448)
T PRK12331 185 AYELVKRIKEAVTVPLEVHTHATSGIAEMTYLKAIEAGADIIDTAISPFA 234 (448)
T ss_pred HHHHHHHHHHhcCCeEEEEecCCCCcHHHHHHHHHHcCCCEEEeeccccC
Confidence 35667776654 5666552 5542 244677899999999988777653
No 189
>PF07908 D-aminoacyl_C: D-aminoacylase, C-terminal region; InterPro: IPR012855 D-aminoacylase (Q9AGH8 from SWISSPROT, 3.5.1.81 from EC) hydrolyses a wide variety of N-acyl derivatives of neutral D-amino acids, in a zinc-dependent manner. The enzyme is composed of a small beta-barrel domain and a larger catalytic alpha/beta-barrel that contains a short alpha/beta insert. The overall structure shares significant similarity to the alpha/beta-barrel amidohydrolase superfamily, in which the beta-strands in both barrels superimpose well []. The C-terminal region featured in this entry forms part of the beta-barrel domain, together with a short N-terminal segment. This domain does not seem to contribute to the substrate-binding site or to be involved in the catalytic process.; GO: 0008270 zinc ion binding, 0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides; PDB: 3GIQ_B 3GIP_B 1V4Y_A 1M7J_A 1RK5_A 1RJP_A 1RJR_A 1RJQ_A 1RK6_A 1V51_A.
Probab=41.52 E-value=27 Score=23.50 Aligned_cols=15 Identities=7% Similarity=0.244 Sum_probs=12.5
Q ss_pred CceeEEEECCEEecC
Q psy12256 403 LHVYSTWIAGDLKLT 417 (417)
Q Consensus 403 ~~v~~v~~~G~~v~~ 417 (417)
.-|..||+||++++.
T Consensus 18 ~GI~~V~VNG~~vv~ 32 (48)
T PF07908_consen 18 EGIDYVFVNGQIVVE 32 (48)
T ss_dssp BSEEEEEETTEEEEC
T ss_pred CCEEEEEECCEEEEE
Confidence 469999999998863
No 190
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=40.35 E-value=2e+02 Score=30.45 Aligned_cols=47 Identities=23% Similarity=0.334 Sum_probs=31.8
Q ss_pred hHHHHHHHHHC-CCeeeec-CCcCC--HHHHHHHHHCCCCeEeeCCCCccc
Q psy12256 142 SMEVIDKLVEQ-GITVSLG-HSSAD--INIAEEAVRHGASLITHLFNAMLP 188 (417)
Q Consensus 142 ~~~~i~~~~~~-gi~v~~G-H~~~~--~~~~~~a~~~G~~~i~Hl~~~~~~ 188 (417)
+.+.++.+++. ++.+.++ |.... ......|+++|++.+.-..++|..
T Consensus 180 v~~lv~~lk~~~~~pi~~H~Hnt~Gla~An~laAveaGa~~vd~ai~GlG~ 230 (582)
T TIGR01108 180 AYELVSALKKRFGLPVHLHSHATTGMAEMALLKAIEAGADGIDTAISSMSG 230 (582)
T ss_pred HHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHhCCCEEEeccccccc
Confidence 45677777664 5555542 55432 346678999999999988887753
No 191
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=37.97 E-value=3.7e+02 Score=25.68 Aligned_cols=124 Identities=15% Similarity=0.170 Sum_probs=59.7
Q ss_pred HHHHHhCCceeeeeccCCCCH-HHHHHHHHHHHcCCCCCCCceeEEeeeeC--CCCCCCCCCCCC-CcccCCCcHHHHHH
Q psy12256 45 ARGILAHGVTSFCPTLVTSEP-QVYKKVLSRLRKTPGGKHGATVLGAHVEG--PFISPDKKGAHS-LSKIVTFDKGFDSV 120 (417)
Q Consensus 45 ~~~~~~~GvTt~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~G~~leG--p~~~~~~~G~~~-~~~~~~~~~~~~~~ 120 (417)
++.+++.|.||+.=-...-|. +.+....+..+- +.-.|+.+|+ ..+....-+... ...+.+| ++..+|
T Consensus 93 i~~ai~~GftSVM~DgS~lp~eeNi~~Trevv~~-------Ah~~gv~VEaElG~igg~ed~~~~~~~~yT~p-eeA~~F 164 (285)
T PRK07709 93 CKEAIDAGFTSVMIDASHHPFEENVETTKKVVEY-------AHARNVSVEAELGTVGGQEDDVIAEGVIYADP-AECKHL 164 (285)
T ss_pred HHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHH-------HHHcCCEEEEEEeccCCccCCcccccccCCCH-HHHHHH
Confidence 456788999999722223343 344433333322 2233444443 222111111111 1223444 456666
Q ss_pred HHHhCCCCCEEEE--Ee------cCCCCChHHHHHHHHHC-CCeeee-cCCcCCHHHHHHHHHCCCCeE
Q psy12256 121 REVYGNLSNIAII--TL------APELAGSMEVIDKLVEQ-GITVSL-GHSSADINIAEEAVRHGASLI 179 (417)
Q Consensus 121 ~~~~g~~~~ik~~--~~------~pe~~~~~~~i~~~~~~-gi~v~~-GH~~~~~~~~~~a~~~G~~~i 179 (417)
.+.-| .|.+.+- ++ .|++. .+.++++++. +++..+ |-|....++.+++++.|+.-+
T Consensus 165 v~~Tg-vD~LAvaiGt~HG~Y~~~p~L~--~~~L~~I~~~~~iPLVLHGgSG~~~e~~~~ai~~Gi~Ki 230 (285)
T PRK07709 165 VEATG-IDCLAPALGSVHGPYKGEPNLG--FAEMEQVRDFTGVPLVLHGGTGIPTADIEKAISLGTSKI 230 (285)
T ss_pred HHHhC-CCEEEEeecccccCcCCCCccC--HHHHHHHHHHHCCCEEEeCCCCCCHHHHHHHHHcCCeEE
Confidence 66544 3544321 22 25543 2444444443 676555 223245678999999997544
No 192
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=36.73 E-value=24 Score=32.11 Aligned_cols=44 Identities=34% Similarity=0.321 Sum_probs=30.1
Q ss_pred EEecCCCcCCHHH--HHHHHhhC----CCCCCCCCHHHHHHHHHccceee
Q psy12256 213 GIIADGVHTHPSA--LRIANSTH----PEGHSSADIHIAEEAVRHGASLI 256 (417)
Q Consensus 213 ~~i~dg~h~~~~~--~~~~~~~~----~~~h~~~~~e~~~~a~~~g~~~~ 256 (417)
++-+||+|+.++- +..+.+.. -+|-+..+.|++.+|.+.|+.++
T Consensus 79 ~~~AdGVHlGq~D~~~~~ar~~~~~~~iIG~S~h~~eea~~A~~~g~DYv 128 (211)
T COG0352 79 AVGADGVHLGQDDMPLAEARELLGPGLIIGLSTHDLEEALEAEELGADYV 128 (211)
T ss_pred hCCCCEEEcCCcccchHHHHHhcCCCCEEEeecCCHHHHHHHHhcCCCEE
Confidence 3457888887663 33444432 25556678999999999987776
No 193
>KOG4549|consensus
Probab=36.56 E-value=78 Score=26.24 Aligned_cols=49 Identities=14% Similarity=0.060 Sum_probs=30.8
Q ss_pred CEeeccchhhcccCCCCCCCCCCC-----CCcHHHHHHHHHHHHhCCceeeeec
Q psy12256 11 KLIAPGFIDIQINGGFGVDFSHDI-----DSVDKNVSIVARGILAHGVTSFCPT 59 (417)
Q Consensus 11 ~~v~PG~ID~H~H~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~GvTt~~~~ 59 (417)
..|.|-+||+|.|.-.-.--.+++ ..--+++...+..+...|||-+...
T Consensus 14 ytiwP~~vdthl~~pfkP~k~~~g~~g~e~~fY~Di~rIL~dLk~~GVtl~~AS 67 (144)
T KOG4549|consen 14 YTIWPRLVDTHLDYPFKPFKCECGSKGEEMIFYDDIRRILVDLKKLGVTLIHAS 67 (144)
T ss_pred ceeeeEEEEecccccccccccCcccCcceeeeccchhHHHHHHHhcCcEEEEec
Confidence 579999999999964210001111 0011246777888999999987653
No 194
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=36.29 E-value=3.2e+02 Score=24.55 Aligned_cols=90 Identities=21% Similarity=0.206 Sum_probs=54.9
Q ss_pred EEEEEecCCCCChHHHHHHHHH-CC--CeeeecCCcCCHHHHHHHHHCCCCeEeeCCCCcccccccCCceEEeecCCCCC
Q psy12256 130 IAIITLAPELAGSMEVIDKLVE-QG--ITVSLGHSSADINIAEEAVRHGASLITHLFNAMLPFHHRDPGIIGLLSSDNID 206 (417)
Q Consensus 130 ik~~~~~pe~~~~~~~i~~~~~-~g--i~v~~GH~~~~~~~~~~a~~~G~~~i~Hl~~~~~~~~~r~~g~~~~~~~~~l~ 206 (417)
++++-+.-..+...+.++.+.+ ++ +.+..|.. -+.+++..++++|++.+ |..
T Consensus 36 i~~iEvt~~~~~~~~~i~~l~~~~~~~~~iGaGTV-~~~~~~~~a~~aGA~fi-vsp----------------------- 90 (206)
T PRK09140 36 FRAIEIPLNSPDPFDSIAALVKALGDRALIGAGTV-LSPEQVDRLADAGGRLI-VTP----------------------- 90 (206)
T ss_pred CCEEEEeCCCccHHHHHHHHHHHcCCCcEEeEEec-CCHHHHHHHHHcCCCEE-ECC-----------------------
Confidence 6666554333445567777765 44 55666555 67889999999998443 211
Q ss_pred CCceEEEEecCCCcCCHHHHHHHHhhC-CCCCCCCCHHHHHHHHHccceeee
Q psy12256 207 SSKVYYGIIADGVHTHPSALRIANSTH-PEGHSSADIHIAEEAVRHGASLIT 257 (417)
Q Consensus 207 ~~~~~~~~i~dg~h~~~~~~~~~~~~~-~~~h~~~~~e~~~~a~~~g~~~~t 257 (417)
+.+++.++...... ....+..+.+|+.+|.+.|+.++.
T Consensus 91 -------------~~~~~v~~~~~~~~~~~~~G~~t~~E~~~A~~~Gad~vk 129 (206)
T PRK09140 91 -------------NTDPEVIRRAVALGMVVMPGVATPTEAFAALRAGAQALK 129 (206)
T ss_pred -------------CCCHHHHHHHHHCCCcEEcccCCHHHHHHHHHcCCCEEE
Confidence 11234444444332 233445678999999999988875
No 195
>PRK08392 hypothetical protein; Provisional
Probab=35.73 E-value=1.5e+02 Score=26.77 Aligned_cols=32 Identities=13% Similarity=0.051 Sum_probs=22.7
Q ss_pred hhhcccCCCCCCCCCCCCCcHHHHHHHHHHHHhCCceeee
Q psy12256 18 IDIQINGGFGVDFSHDIDSVDKNVSIVARGILAHGVTSFC 57 (417)
Q Consensus 18 ID~H~H~~~g~~~~~~~~~~~~~~~~~~~~~~~~GvTt~~ 57 (417)
||.|+|-... + . ..+++...+.+.+.|++.+.
T Consensus 1 ~D~H~HT~~s-d----~---~~~~~e~v~~A~~~Gl~~i~ 32 (215)
T PRK08392 1 MDLHTHTVYS-D----G---IGSVRDNIAEAERKGLRLVG 32 (215)
T ss_pred CccccCCCCc-C----C---cCCHHHHHHHHHHcCCCEEE
Confidence 7999997543 2 1 12366778888899999775
No 196
>PF02811 PHP: PHP domain; InterPro: IPR004013 The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain. This family is often associated with an N-terminal region IPR003141 from INTERPRO.; GO: 0003824 catalytic activity; PDB: 2WJE_A 3QY8_A 2WJD_A 2WJF_A 1PB0_B 1M68_A 1M65_A 3E38_B 2W9M_A 3E0F_A ....
Probab=35.53 E-value=39 Score=28.77 Aligned_cols=34 Identities=9% Similarity=0.198 Sum_probs=21.5
Q ss_pred hhhcccCCCCCCCCCCCCCcHHHHHHHHHHHHhCCceeee
Q psy12256 18 IDIQINGGFGVDFSHDIDSVDKNVSIVARGILAHGVTSFC 57 (417)
Q Consensus 18 ID~H~H~~~g~~~~~~~~~~~~~~~~~~~~~~~~GvTt~~ 57 (417)
||.|+|-.+... + . ..+++.+.+.+.+.|++++.
T Consensus 1 iDlH~HT~~s~~--d-g---~~~~~e~v~~A~~~Gl~~i~ 34 (175)
T PF02811_consen 1 IDLHVHTKYSIL--D-G---KDSPEEYVEQAKEKGLDAIA 34 (175)
T ss_dssp EEEEB--TTTSS--T-S---SSSHHHHHHHHHHTTESEEE
T ss_pred CCccccccCcch--h-h---cCCHHHHHHHHHHcCCCEEE
Confidence 799999765411 1 1 11366777888999999876
No 197
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=35.24 E-value=4.1e+02 Score=25.51 Aligned_cols=106 Identities=18% Similarity=0.254 Sum_probs=63.3
Q ss_pred HHHHHHhCCceeeeeccCCCCHHHHHHHHHHHHcCCCCCCCceeEEeeeeCCCCCCCCCCCCCCcccCCCc--HHHHHHH
Q psy12256 44 VARGILAHGVTSFCPTLVTSEPQVYKKVLSRLRKTPGGKHGATVLGAHVEGPFISPDKKGAHSLSKIVTFD--KGFDSVR 121 (417)
Q Consensus 44 ~~~~~~~~GvTt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~leGp~~~~~~~G~~~~~~~~~~~--~~~~~~~ 121 (417)
++.+..+.|--.+++... .+++.+++.++.+++.. ...+|+.+- ++ .|. +.++.+.
T Consensus 27 la~avs~aGglG~l~~~~-~~~~~l~~~i~~~~~~t-----~~pfgvn~~--~~--------------~~~~~~~~~~~~ 84 (307)
T TIGR03151 27 LAAAVSNAGGLGIIGAGN-APPDVVRKEIRKVKELT-----DKPFGVNIM--LL--------------SPFVDELVDLVI 84 (307)
T ss_pred HHHHHHhCCCcceecccc-CCHHHHHHHHHHHHHhc-----CCCcEEeee--cC--------------CCCHHHHHHHHH
Confidence 445555666666666533 35677777777776642 234455542 11 112 2234343
Q ss_pred HHhCCCCCEEEEEecCCCCChHHHHHHHHHCCCeeeecCCcCCHHHHHHHHHCCCCeEe
Q psy12256 122 EVYGNLSNIAIITLAPELAGSMEVIDKLVEQGITVSLGHSSADINIAEEAVRHGASLIT 180 (417)
Q Consensus 122 ~~~g~~~~ik~~~~~pe~~~~~~~i~~~~~~gi~v~~GH~~~~~~~~~~a~~~G~~~i~ 180 (417)
+. + ++++.++-..+ .+.+++++++|+++. +...+.++++.+.++|+|.+.
T Consensus 85 ~~-~----v~~v~~~~g~p--~~~i~~lk~~g~~v~--~~v~s~~~a~~a~~~GaD~Iv 134 (307)
T TIGR03151 85 EE-K----VPVVTTGAGNP--GKYIPRLKENGVKVI--PVVASVALAKRMEKAGADAVI 134 (307)
T ss_pred hC-C----CCEEEEcCCCc--HHHHHHHHHcCCEEE--EEcCCHHHHHHHHHcCCCEEE
Confidence 42 2 44444443323 368999999999885 333678889999999999885
No 198
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=35.16 E-value=4.1e+02 Score=25.39 Aligned_cols=125 Identities=14% Similarity=0.168 Sum_probs=58.9
Q ss_pred HHHHHHhCCceeeeeccCCCCH-HHHHHHHHHHHcCCCCCCCceeEEeeeeC--CCCCCCCCC---CCCCcccCCCcHHH
Q psy12256 44 VARGILAHGVTSFCPTLVTSEP-QVYKKVLSRLRKTPGGKHGATVLGAHVEG--PFISPDKKG---AHSLSKIVTFDKGF 117 (417)
Q Consensus 44 ~~~~~~~~GvTt~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~G~~leG--p~~~~~~~G---~~~~~~~~~~~~~~ 117 (417)
..+..++.|.||+.=-...-|. +.++...+..+-+ .-.|+.+|| ..+....-+ ......+.+| ++.
T Consensus 92 ~i~~ai~~GftSVMiDgS~lp~eeNi~~T~~vv~~A-------h~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~p-eea 163 (288)
T TIGR00167 92 DCAQAVKAGFSSVMIDGSHEPFEENIELTKKVVERA-------HKMGVSVEAELGTLGGEEDGVSVADESALYTDP-EEA 163 (288)
T ss_pred HHHHHHHcCCCEEEecCCCCCHHHHHHHHHHHHHHH-------HHcCCEEEEEEeeccCccCCcccccccccCCCH-HHH
Confidence 3556678899999722222333 3444443333222 222444432 122111111 1111234444 466
Q ss_pred HHHHHHhCCCCCEEE--------EEecCC-CCChHHHHHHHHHC-CCeeee-cCCcCCHHHHHHHHHCCCCeE
Q psy12256 118 DSVREVYGNLSNIAI--------ITLAPE-LAGSMEVIDKLVEQ-GITVSL-GHSSADINIAEEAVRHGASLI 179 (417)
Q Consensus 118 ~~~~~~~g~~~~ik~--------~~~~pe-~~~~~~~i~~~~~~-gi~v~~-GH~~~~~~~~~~a~~~G~~~i 179 (417)
++|.+.-| .|.+.+ +.-.|. ++ .+.++++++. +++..+ |-|....++.+++++.|+.-+
T Consensus 164 ~~Fv~~Tg-vD~LAvaiGt~HG~y~~~p~~Ld--~~~L~~I~~~v~vPLVlHGgSG~~~e~~~~ai~~Gi~Ki 233 (288)
T TIGR00167 164 KEFVKLTG-VDSLAAAIGNVHGVYKGEPKGLD--FERLEEIQKYVNLPLVLHGGSGIPDEEIKKAISLGVVKV 233 (288)
T ss_pred HHHHhccC-CcEEeeccCccccccCCCCCccC--HHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHcCCeEE
Confidence 66666533 344432 111355 43 3455555443 565555 333345678999999997444
No 199
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=34.38 E-value=53 Score=30.80 Aligned_cols=40 Identities=25% Similarity=0.436 Sum_probs=30.8
Q ss_pred HHHHHHHHHC-CCeeeecCCcCCHHHHHHHHHCCCCeEeeCCC
Q psy12256 143 MEVIDKLVEQ-GITVSLGHSSADINIAEEAVRHGASLITHLFN 184 (417)
Q Consensus 143 ~~~i~~~~~~-gi~v~~GH~~~~~~~~~~a~~~G~~~i~Hl~~ 184 (417)
..+++.+++. ++++++ |+ ...+.++.++++|++.+.+...
T Consensus 64 ~~~v~~~~~~~~~plsi-DT-~~~~vi~~al~~G~~iINsis~ 104 (257)
T TIGR01496 64 VPVIKALRDQPDVPISV-DT-YRAEVARAALEAGADIINDVSG 104 (257)
T ss_pred HHHHHHHHhcCCCeEEE-eC-CCHHHHHHHHHcCCCEEEECCC
Confidence 3556666666 888988 77 5678888899999999988654
No 200
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=33.20 E-value=1.6e+02 Score=27.35 Aligned_cols=46 Identities=22% Similarity=0.244 Sum_probs=32.5
Q ss_pred HHHHHHHHHhCC-CCCEEE----EEecCCCCChHHHHHHHHHCCCeeeecCC
Q psy12256 115 KGFDSVREVYGN-LSNIAI----ITLAPELAGSMEVIDKLVEQGITVSLGHS 161 (417)
Q Consensus 115 ~~~~~~~~~~g~-~~~ik~----~~~~pe~~~~~~~i~~~~~~gi~v~~GH~ 161 (417)
..++++.+.+|. .+.+|+ ..+.|+ .-..+.|+.++++|+.++.|++
T Consensus 12 ~~~~d~Le~~g~yID~lKfg~Gt~~l~~~-~~l~eki~la~~~~V~v~~GGt 62 (237)
T TIGR03849 12 KFVEDYLKVCGDYITFVKFGWGTSALIDR-DIVKEKIEMYKDYGIKVYPGGT 62 (237)
T ss_pred HHHHHHHHHhhhheeeEEecCceEeeccH-HHHHHHHHHHHHcCCeEeCCcc
Confidence 457777777664 445564 244564 2346899999999999999964
No 201
>PRK14057 epimerase; Provisional
Probab=33.06 E-value=4.2e+02 Score=24.86 Aligned_cols=63 Identities=10% Similarity=0.170 Sum_probs=38.2
Q ss_pred HHHHHHHHHhCCCCCEEEEEecCCCCC------hHHHHHHHH----HCC--CeeeecCCcCCHHHHHHHHHCCCCeEee
Q psy12256 115 KGFDSVREVYGNLSNIAIITLAPELAG------SMEVIDKLV----EQG--ITVSLGHSSADINIAEEAVRHGASLITH 181 (417)
Q Consensus 115 ~~~~~~~~~~g~~~~ik~~~~~pe~~~------~~~~i~~~~----~~g--i~v~~GH~~~~~~~~~~a~~~G~~~i~H 181 (417)
+.++.+... .+.|.+|++.|...+ ..+-|++++ ++| ..+.+.-. -+.+.+.+.+++|++.+.-
T Consensus 146 e~i~~~l~~---vD~VLvMtV~PGfgGQ~Fi~~~l~KI~~lr~~~~~~~~~~~IeVDGG-I~~~ti~~l~~aGad~~V~ 220 (254)
T PRK14057 146 DVIIPILSD---VEVIQLLAVNPGYGSKMRSSDLHERVAQLLCLLGDKREGKIIVIDGS-LTQDQLPSLIAQGIDRVVS 220 (254)
T ss_pred HHHHHHHHh---CCEEEEEEECCCCCchhccHHHHHHHHHHHHHHHhcCCCceEEEECC-CCHHHHHHHHHCCCCEEEE
Confidence 455666553 567899999997522 233444433 334 33444322 3577888899999976644
No 202
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=32.03 E-value=4.6e+02 Score=25.02 Aligned_cols=125 Identities=13% Similarity=0.107 Sum_probs=60.7
Q ss_pred HHHHHhCCceeeeeccCCCCH-HHHHHHHHHHHcCCCCCCCceeEEeeeeC--CCCCCCCCCCC-CCcccCCCcHHHHHH
Q psy12256 45 ARGILAHGVTSFCPTLVTSEP-QVYKKVLSRLRKTPGGKHGATVLGAHVEG--PFISPDKKGAH-SLSKIVTFDKGFDSV 120 (417)
Q Consensus 45 ~~~~~~~GvTt~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~G~~leG--p~~~~~~~G~~-~~~~~~~~~~~~~~~ 120 (417)
.+.+++.|.||+.=-...-|. +.+....+..+.+ .-+|+.+|+ ..+....-+.. ....+.+| ++..+|
T Consensus 90 i~~Ai~~GftSVM~DgS~l~~eeNi~~T~~vve~A-------h~~gv~VEaElG~vgg~ed~~~~~~~~~T~p-e~a~~F 161 (283)
T PRK07998 90 VKQAVRAGFTSVMIDGAALPFEENIAFTKEAVDFA-------KSYGVPVEAELGAILGKEDDHVSEADCKTEP-EKVKDF 161 (283)
T ss_pred HHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHH-------HHcCCEEEEEeccCCCccccccccccccCCH-HHHHHH
Confidence 445678899999732233344 3554444444332 223444432 22211111111 11234445 455666
Q ss_pred HHHhCCCCCEEEE--Eec-----CCCCChHHHHHHHHHC-CCeeee-cCCcCCHHHHHHHHHCCCCeEe
Q psy12256 121 REVYGNLSNIAII--TLA-----PELAGSMEVIDKLVEQ-GITVSL-GHSSADINIAEEAVRHGASLIT 180 (417)
Q Consensus 121 ~~~~g~~~~ik~~--~~~-----pe~~~~~~~i~~~~~~-gi~v~~-GH~~~~~~~~~~a~~~G~~~i~ 180 (417)
.+.-| .|.+++- +++ |.+. .+.++++++. ++++.+ |-|..+.++.+++++.|+.-+-
T Consensus 162 v~~Tg-vD~LAvaiGt~HG~Y~~p~l~--~~~l~~I~~~~~vPLVlHGgSG~~~e~~~~ai~~Gi~KiN 227 (283)
T PRK07998 162 VERTG-CDMLAVSIGNVHGLEDIPRID--IPLLKRIAEVSPVPLVIHGGSGIPPEILRSFVNYKVAKVN 227 (283)
T ss_pred HHHhC-cCeeehhccccccCCCCCCcC--HHHHHHHHhhCCCCEEEeCCCCCCHHHHHHHHHcCCcEEE
Confidence 66543 3444321 111 5543 3555555554 665555 3333456788999999975543
No 203
>PRK12656 fructose-6-phosphate aldolase; Reviewed
Probab=30.41 E-value=2.2e+02 Score=26.08 Aligned_cols=44 Identities=18% Similarity=0.306 Sum_probs=35.8
Q ss_pred hHHHHHHHHHCCCeeeecCCcCCHHHHHHHHHCCCCeEeeCCCCc
Q psy12256 142 SMEVIDKLVEQGITVSLGHSSADINIAEEAVRHGASLITHLFNAM 186 (417)
Q Consensus 142 ~~~~i~~~~~~gi~v~~GH~~~~~~~~~~a~~~G~~~i~Hl~~~~ 186 (417)
..++++.+.++|+++-+ -.-.+.+|+..+.++|++-+..+.|-|
T Consensus 94 Gl~Ai~~L~~~Gi~vn~-T~ifs~~Qa~~Aa~aGa~yvsPyvgRi 137 (222)
T PRK12656 94 GLAAIKTLKAEGYHITA-TAIYTVFQGLLAIEAGADYLAPYYNRM 137 (222)
T ss_pred HHHHHHHHHHCCCceEE-eeeCCHHHHHHHHHCCCCEEecccchh
Confidence 36899999999999975 233678999999999998888877655
No 204
>PRK08005 epimerase; Validated
Probab=28.55 E-value=4.5e+02 Score=23.82 Aligned_cols=63 Identities=14% Similarity=0.086 Sum_probs=38.9
Q ss_pred HHHHHHHHHhCCCCCEEEEEecCCCC------ChHHHHHHHHHCC--CeeeecCCcCCHHHHHHHHHCCCCeEee
Q psy12256 115 KGFDSVREVYGNLSNIAIITLAPELA------GSMEVIDKLVEQG--ITVSLGHSSADINIAEEAVRHGASLITH 181 (417)
Q Consensus 115 ~~~~~~~~~~g~~~~ik~~~~~pe~~------~~~~~i~~~~~~g--i~v~~GH~~~~~~~~~~a~~~G~~~i~H 181 (417)
+.++.+... .+.+.+|++.|.-. ...+-++++++.- ..+.+.-. -+.+.+.+.+++|++.+--
T Consensus 120 ~~i~~~l~~---vD~VlvMsV~PGf~GQ~f~~~~~~KI~~l~~~~~~~~I~VDGG-I~~~~i~~l~~aGad~~V~ 190 (210)
T PRK08005 120 LPYRYLALQ---LDALMIMTSEPDGRGQQFIAAMCEKVSQSREHFPAAECWADGG-ITLRAARLLAAAGAQHLVI 190 (210)
T ss_pred HHHHHHHHh---cCEEEEEEecCCCccceecHHHHHHHHHHHHhcccCCEEEECC-CCHHHHHHHHHCCCCEEEE
Confidence 455555553 56789999999752 2345666666542 12333222 3578888899999976643
No 205
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=28.37 E-value=5.3e+02 Score=24.61 Aligned_cols=124 Identities=15% Similarity=0.180 Sum_probs=59.0
Q ss_pred HHHHHhCCceeeeeccCCCCH-HHHHHHHHHHHcCCCCCCCceeEEeeeeC--CCCCCCCCCCCC-CcccCCCcHHHHHH
Q psy12256 45 ARGILAHGVTSFCPTLVTSEP-QVYKKVLSRLRKTPGGKHGATVLGAHVEG--PFISPDKKGAHS-LSKIVTFDKGFDSV 120 (417)
Q Consensus 45 ~~~~~~~GvTt~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~G~~leG--p~~~~~~~G~~~-~~~~~~~~~~~~~~ 120 (417)
.+.+++.|.||+.=-...-|. +.++...+..+-+ .-.|+.+|| ..+....-+... ...+.+| ++..+|
T Consensus 93 i~~ai~~GftSVM~DgS~l~~eeNi~~T~~vve~A-------h~~gv~VEaElG~vgg~ed~~~~~~~~yT~p-eea~~F 164 (286)
T PRK08610 93 CKEAIDAGFTSVMIDASHSPFEENVATTKKVVEYA-------HEKGVSVEAELGTVGGQEDDVVADGIIYADP-KECQEL 164 (286)
T ss_pred HHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHH-------HHcCCEEEEEEeccCCccCCCCCcccccCCH-HHHHHH
Confidence 455788899999722222333 3444444444322 233444443 222111111111 1223344 556666
Q ss_pred HHHhCCCCCEEEE--Ee------cCCCCChHHHHHHHHHC-CCeeee-cCCcCCHHHHHHHHHCCCCeE
Q psy12256 121 REVYGNLSNIAII--TL------APELAGSMEVIDKLVEQ-GITVSL-GHSSADINIAEEAVRHGASLI 179 (417)
Q Consensus 121 ~~~~g~~~~ik~~--~~------~pe~~~~~~~i~~~~~~-gi~v~~-GH~~~~~~~~~~a~~~G~~~i 179 (417)
.+.-| .|.+.+- |+ .|.+. .+.++++++. +++..+ |-|....++.+++++.|+.-+
T Consensus 165 v~~Tg-vD~LAvaiGt~HG~Y~~~p~Ld--~~~L~~I~~~~~vPLVLHGgSG~~~e~~~~ai~~GI~Ki 230 (286)
T PRK08610 165 VEKTG-IDALAPALGSVHGPYKGEPKLG--FKEMEEIGLSTGLPLVLHGGTGIPTKDIQKAIPFGTAKI 230 (286)
T ss_pred HHHHC-CCEEEeeccccccccCCCCCCC--HHHHHHHHHHHCCCEEEeCCCCCCHHHHHHHHHCCCeEE
Confidence 66544 3444321 22 25443 2444444443 676555 223245678999999997444
No 206
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=27.94 E-value=1.8e+02 Score=29.63 Aligned_cols=62 Identities=15% Similarity=0.200 Sum_probs=41.3
Q ss_pred HHHHHHHHhCCCCCEEEEEecCCCCChHHHHHHHHHC--CCeeeecCCcCCHHHHHHHHHCCCCeEe
Q psy12256 116 GFDSVREVYGNLSNIAIITLAPELAGSMEVIDKLVEQ--GITVSLGHSSADINIAEEAVRHGASLIT 180 (417)
Q Consensus 116 ~~~~~~~~~g~~~~ik~~~~~pe~~~~~~~i~~~~~~--gi~v~~GH~~~~~~~~~~a~~~G~~~i~ 180 (417)
..+.+.+. | .+.|.+-+.+.......+.+++++++ .+.+.+|.. .+.++++.++++|++.+-
T Consensus 228 r~~~L~~a-G-~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~G~v-~t~~~a~~l~~aGad~i~ 291 (450)
T TIGR01302 228 RAEALVKA-G-VDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIAGNV-ATAEQAKALIDAGADGLR 291 (450)
T ss_pred HHHHHHHh-C-CCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEEEeC-CCHHHHHHHHHhCCCEEE
Confidence 44555553 2 34333322233435567888888887 567767766 789999999999999984
No 207
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=27.43 E-value=2e+02 Score=29.82 Aligned_cols=40 Identities=18% Similarity=0.287 Sum_probs=32.2
Q ss_pred CChHHHHHHHHHC--CCeeeecCCcCCHHHHHHHHHCCCCeEe
Q psy12256 140 AGSMEVIDKLVEQ--GITVSLGHSSADINIAEEAVRHGASLIT 180 (417)
Q Consensus 140 ~~~~~~i~~~~~~--gi~v~~GH~~~~~~~~~~a~~~G~~~i~ 180 (417)
....+.+++++++ ++.+..|+. .+.++++.++++|++.+-
T Consensus 267 ~~~~~~i~~ik~~~~~~~v~aG~V-~t~~~a~~~~~aGad~I~ 308 (495)
T PTZ00314 267 IYQIDMIKKLKSNYPHVDIIAGNV-VTADQAKNLIDAGADGLR 308 (495)
T ss_pred hHHHHHHHHHHhhCCCceEEECCc-CCHHHHHHHHHcCCCEEE
Confidence 3446788888887 577777766 689999999999999884
No 208
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=25.76 E-value=1.6e+02 Score=26.21 Aligned_cols=37 Identities=24% Similarity=0.388 Sum_probs=27.7
Q ss_pred HHHHHHHHHCCCee-eecCCcCCHHHHHHHHHCCCCeEe
Q psy12256 143 MEVIDKLVEQGITV-SLGHSSADINIAEEAVRHGASLIT 180 (417)
Q Consensus 143 ~~~i~~~~~~gi~v-~~GH~~~~~~~~~~a~~~G~~~i~ 180 (417)
.++++++.+.++++ +-|+. .+++++.++++.|+..+.
T Consensus 134 ~~lv~~l~~~~~pvIaEGri-~tpe~a~~al~~GA~aVV 171 (192)
T PF04131_consen 134 FELVRELVQADVPVIAEGRI-HTPEQAAKALELGAHAVV 171 (192)
T ss_dssp HHHHHHHHHTTSEEEEESS---SHHHHHHHHHTT-SEEE
T ss_pred HHHHHHHHhCCCcEeecCCC-CCHHHHHHHHhcCCeEEE
Confidence 58888888888876 66877 468999999999986554
No 209
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=25.46 E-value=2.5e+02 Score=26.78 Aligned_cols=129 Identities=15% Similarity=0.210 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCceeeeeccCCCCHHHHHHHHHHHHcCCCCCCCceeEEeeee---CCCCCCCC--CCCCCCcccCCCcHH
Q psy12256 42 SIVARGILAHGVTSFCPTLVTSEPQVYKKVLSRLRKTPGGKHGATVLGAHVE---GPFISPDK--KGAHSLSKIVTFDKG 116 (417)
Q Consensus 42 ~~~~~~~~~~GvTt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~le---Gp~~~~~~--~G~~~~~~~~~~~~~ 116 (417)
...+....+.|.||+. +..+...+.+-+..-++.. .-+.-.|+.+| |-.-..+. .+...++.+..|++.
T Consensus 88 ~~~~~~ai~~GFsSvM---iDgS~~~~eENi~~tkevv---~~ah~~gvsVEaElG~~GG~Edg~~~~~~~~~~tdp~ea 161 (286)
T COG0191 88 FEDCKQAIRAGFSSVM---IDGSHLPFEENIAITKEVV---EFAHAYGVSVEAELGTLGGEEDGVVLYTDPADLTDPEEA 161 (286)
T ss_pred HHHHHHHHhcCCceEE---ecCCcCCHHHHHHHHHHHH---HHHHHcCCcEEEEeccccCccCCcccccchhhhCCHHHH
Q ss_pred HHHHHHHhCCCCCE--EEEEec-------CCC-CChHHHHHHHHHCCCeeeecCCcCCHHHHHHHHHCCCCeE
Q psy12256 117 FDSVREVYGNLSNI--AIITLA-------PEL-AGSMEVIDKLVEQGITVSLGHSSADINIAEEAVRHGASLI 179 (417)
Q Consensus 117 ~~~~~~~~g~~~~i--k~~~~~-------pe~-~~~~~~i~~~~~~gi~v~~GH~~~~~~~~~~a~~~G~~~i 179 (417)
++...+. +.|.+ .+=+++ |.+ ...++.|++.....++.. |-|-...++++++++.|+.-+
T Consensus 162 ~~fv~~t--giD~LA~aiGn~HG~Yk~~~p~L~~~~L~~i~~~~~~PlVlH-GgSGip~~eI~~aI~~GV~Kv 231 (286)
T COG0191 162 LEFVERT--GIDALAAAIGNVHGVYKPGNPKLDFDRLKEIQEAVSLPLVLH-GGSGIPDEEIREAIKLGVAKV 231 (286)
T ss_pred HHHHhcc--CcceeeeeccccccCCCCCCCCCCHHHHHHHHHHhCCCEEEe-CCCCCCHHHHHHHHHhCceEE
No 210
>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family. This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.
Probab=25.09 E-value=1.4e+02 Score=27.10 Aligned_cols=43 Identities=16% Similarity=0.274 Sum_probs=35.6
Q ss_pred HHHHHHHHHCCCeeeecCCcCCHHHHHHHHHCCCCeEeeCCCCc
Q psy12256 143 MEVIDKLVEQGITVSLGHSSADINIAEEAVRHGASLITHLFNAM 186 (417)
Q Consensus 143 ~~~i~~~~~~gi~v~~GH~~~~~~~~~~a~~~G~~~i~Hl~~~~ 186 (417)
.++++.+.+.|+++.+- .-.+..|+..+.++|++-+....|-|
T Consensus 91 l~A~~~L~~~Gi~v~~T-~vfs~~Qa~~Aa~aGa~yispyvgRi 133 (213)
T TIGR00875 91 LKAVKILKKEGIKTNVT-LVFSAAQALLAAKAGATYVSPFVGRL 133 (213)
T ss_pred HHHHHHHHHCCCceeEE-EecCHHHHHHHHHcCCCEEEeecchH
Confidence 68999999999999763 23678899999999999888877655
No 211
>PRK01362 putative translaldolase; Provisional
Probab=25.07 E-value=1.3e+02 Score=27.35 Aligned_cols=43 Identities=19% Similarity=0.318 Sum_probs=35.9
Q ss_pred HHHHHHHHHCCCeeeecCCcCCHHHHHHHHHCCCCeEeeCCCCc
Q psy12256 143 MEVIDKLVEQGITVSLGHSSADINIAEEAVRHGASLITHLFNAM 186 (417)
Q Consensus 143 ~~~i~~~~~~gi~v~~GH~~~~~~~~~~a~~~G~~~i~Hl~~~~ 186 (417)
.++++.+.++|+++.+- .-.+..|+..+.++|++-+....|-|
T Consensus 91 ~~a~~~L~~~Gi~v~~T-~vfs~~Qa~~Aa~aGa~yispyvgRi 133 (214)
T PRK01362 91 LKAVKALSKEGIKTNVT-LIFSANQALLAAKAGATYVSPFVGRL 133 (214)
T ss_pred HHHHHHHHHCCCceEEe-eecCHHHHHHHHhcCCcEEEeecchH
Confidence 68999999999999763 23678899999999999888877655
No 212
>PF15581 Imm35: Immunity protein 35
Probab=24.64 E-value=2.7e+02 Score=21.35 Aligned_cols=50 Identities=14% Similarity=0.094 Sum_probs=36.0
Q ss_pred hccCCCHHHHHHHHhHHHHHHcCCCCCccccccCCCccEEEEcCCCceeEEEECCEEe
Q psy12256 358 RSTRCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILDEGLHVYSTWIAGDLK 415 (417)
Q Consensus 358 ~~~~~~~~~~l~~~t~~pA~~l~l~~~~G~l~~G~~ADlvv~d~~~~v~~v~~~G~~v 415 (417)
+|.|||-+|+++..-..+++-- -+.+-.-+.-|++.|| .|...+..|+++
T Consensus 42 eWRGl~~~qV~~kl~ava~~~~-----~~~~vvKkE~~~Iwfd---~VrF~f~~GrL~ 91 (93)
T PF15581_consen 42 EWRGLPEEQVLYKLEAVAAKGP-----EAKIVVKKEGNIIWFD---EVRFNFDEGRLV 91 (93)
T ss_pred HHcCCCHHHHHHHHHHHHhcCC-----CcceEEEecCCeEEEc---ceeEEeccceEe
Confidence 4689999999988766665432 2445555577888886 678888888876
No 213
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=24.50 E-value=3.7e+02 Score=26.09 Aligned_cols=37 Identities=32% Similarity=0.433 Sum_probs=29.3
Q ss_pred HHHHHHHHHCCCeeeecCCcCCHHHHHHHHHCCCCeEee
Q psy12256 143 MEVIDKLVEQGITVSLGHSSADINIAEEAVRHGASLITH 181 (417)
Q Consensus 143 ~~~i~~~~~~gi~v~~GH~~~~~~~~~~a~~~G~~~i~H 181 (417)
.+.++.+++.|+++. |..++.++++.+.++|+|.+.-
T Consensus 126 ~~~i~~l~~~gi~v~--~~v~s~~~A~~a~~~G~D~iv~ 162 (330)
T PF03060_consen 126 PEVIERLHAAGIKVI--PQVTSVREARKAAKAGADAIVA 162 (330)
T ss_dssp HHHHHHHHHTT-EEE--EEESSHHHHHHHHHTT-SEEEE
T ss_pred HHHHHHHHHcCCccc--cccCCHHHHHHhhhcCCCEEEE
Confidence 478999999999885 4557899999999999988753
No 214
>cd00439 Transaldolase Transaldolase. Enzymes found in the non-oxidative branch of the pentose phosphate pathway, that catalyze the reversible transfer of a dihydroxyacetone group from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. They are members of the class I aldolases, who are characterized by using a Schiff-base mechanism for stabilization of the reaction intermediates.
Probab=24.01 E-value=1.5e+02 Score=27.80 Aligned_cols=44 Identities=20% Similarity=0.306 Sum_probs=36.7
Q ss_pred HHHHHHHHHCCCeeeecCCcCCHHHHHHHHHCCCCeEeeCCCCcc
Q psy12256 143 MEVIDKLVEQGITVSLGHSSADINIAEEAVRHGASLITHLFNAML 187 (417)
Q Consensus 143 ~~~i~~~~~~gi~v~~GH~~~~~~~~~~a~~~G~~~i~Hl~~~~~ 187 (417)
.++++.+.++||++.+ -.-.+..++..+.++|+..+..+.|-+.
T Consensus 129 l~A~~~L~~~GI~vn~-T~vfs~~Qa~~aa~Aga~~ispfvgRid 172 (252)
T cd00439 129 IPAIKDLIAAGISVNV-TLIFSIAQYEAVADAGTSVASPFVSRID 172 (252)
T ss_pred HHHHHHHHHCCCceee-eeecCHHHHHHHHHcCCCEEEEeccHHH
Confidence 6899999999999975 2336789999999999998888887664
No 215
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=24.01 E-value=5.3e+02 Score=23.11 Aligned_cols=38 Identities=18% Similarity=0.198 Sum_probs=28.1
Q ss_pred ChHHHHHHHHHCC-CeeeecCCcCCHHHHHHHHHCCCCeEe
Q psy12256 141 GSMEVIDKLVEQG-ITVSLGHSSADINIAEEAVRHGASLIT 180 (417)
Q Consensus 141 ~~~~~i~~~~~~g-i~v~~GH~~~~~~~~~~a~~~G~~~i~ 180 (417)
...+.++.+++++ +.+..+ ..+.+++..+.+.|++.+.
T Consensus 110 ~~~~~i~~~~~~g~~~iiv~--v~t~~ea~~a~~~G~d~i~ 148 (219)
T cd04729 110 TLAELIKRIHEEYNCLLMAD--ISTLEEALNAAKLGFDIIG 148 (219)
T ss_pred CHHHHHHHHHHHhCCeEEEE--CCCHHHHHHHHHcCCCEEE
Confidence 4568898999998 666543 2457788888889998873
No 216
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=23.90 E-value=1.2e+02 Score=28.47 Aligned_cols=37 Identities=24% Similarity=0.318 Sum_probs=26.4
Q ss_pred HHHHHHHHHCCCeeeecCCcCCHHHHHHHHHCCCCeEee
Q psy12256 143 MEVIDKLVEQGITVSLGHSSADINIAEEAVRHGASLITH 181 (417)
Q Consensus 143 ~~~i~~~~~~gi~v~~GH~~~~~~~~~~a~~~G~~~i~H 181 (417)
.+.|+.+++.|+... +.. .+.+++++..++|+|.+.-
T Consensus 140 Vemi~~A~~~gl~T~-~yv-f~~e~A~~M~~AGaDiiv~ 176 (268)
T PF09370_consen 140 VEMIRKAHEKGLFTT-AYV-FNEEQARAMAEAGADIIVA 176 (268)
T ss_dssp HHHHHHHHHTT-EE---EE--SHHHHHHHHHHT-SEEEE
T ss_pred HHHHHHHHHCCCeee-eee-cCHHHHHHHHHcCCCEEEe
Confidence 478999999998764 334 5688999999999998854
No 217
>PTZ00411 transaldolase-like protein; Provisional
Probab=23.59 E-value=3.1e+02 Score=26.83 Aligned_cols=53 Identities=23% Similarity=0.365 Sum_probs=40.6
Q ss_pred ecCCCCChHHHHHHHHHCCCeeeecCCcCCHHHHHHHHHCCCCeEeeCCCCcccc
Q psy12256 135 LAPELAGSMEVIDKLVEQGITVSLGHSSADINIAEEAVRHGASLITHLFNAMLPF 189 (417)
Q Consensus 135 ~~pe~~~~~~~i~~~~~~gi~v~~GH~~~~~~~~~~a~~~G~~~i~Hl~~~~~~~ 189 (417)
++.-+.+ .++++.+.+.||.+-+- .-.+..++..+.++|+..+..+.+-+.-+
T Consensus 143 IPaT~eG-i~Aa~~L~~eGI~~N~T-lvFS~~QA~aaaeAGa~~ISPfVGRi~d~ 195 (333)
T PTZ00411 143 LASTWEG-IQAAKALEKEGIHCNLT-LLFSFAQAVACAQAGVTLISPFVGRILDW 195 (333)
T ss_pred eCCCHHH-HHHHHHHHHCCCceeEe-EecCHHHHHHHHHcCCCEEEeecchHHHh
Confidence 3333455 68999999999998652 23678999999999999999988766443
No 218
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=23.53 E-value=2.5e+02 Score=28.90 Aligned_cols=40 Identities=15% Similarity=0.307 Sum_probs=33.3
Q ss_pred CChHHHHHHHHHC--CCeeeecCCcCCHHHHHHHHHCCCCeEe
Q psy12256 140 AGSMEVIDKLVEQ--GITVSLGHSSADINIAEEAVRHGASLIT 180 (417)
Q Consensus 140 ~~~~~~i~~~~~~--gi~v~~GH~~~~~~~~~~a~~~G~~~i~ 180 (417)
....+.++++++. ++.+..|.. .+.++++.++++|++.+.
T Consensus 251 ~~~~~~i~~i~~~~~~~~vi~g~~-~t~~~~~~l~~~G~d~i~ 292 (475)
T TIGR01303 251 VKMISAIKAVRALDLGVPIVAGNV-VSAEGVRDLLEAGANIIK 292 (475)
T ss_pred HHHHHHHHHHHHHCCCCeEEEecc-CCHHHHHHHHHhCCCEEE
Confidence 4457889999987 788877766 789999999999999886
No 219
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=23.46 E-value=5.8e+02 Score=23.42 Aligned_cols=63 Identities=21% Similarity=0.400 Sum_probs=37.9
Q ss_pred HHHHHHHHHhCCCCCEEEEEecCCCCC------hHHHHHHHH----HCCC--eeeecCCcCCHHHHHHHHHCCCCeEee
Q psy12256 115 KGFDSVREVYGNLSNIAIITLAPELAG------SMEVIDKLV----EQGI--TVSLGHSSADINIAEEAVRHGASLITH 181 (417)
Q Consensus 115 ~~~~~~~~~~g~~~~ik~~~~~pe~~~------~~~~i~~~~----~~gi--~v~~GH~~~~~~~~~~a~~~G~~~i~H 181 (417)
+.++.+... .+.+-+|++.|...+ ..+-|++++ ++|. .+.+.-. -+.+.+.+..++|++.+.-
T Consensus 122 ~~l~~~l~~---vD~VLvMsV~PGf~GQ~fi~~~l~KI~~lr~~~~~~~~~~~IeVDGG-I~~~~i~~~~~aGad~~V~ 196 (229)
T PRK09722 122 ESIKYYIHL---LDKITVMTVDPGFAGQPFIPEMLDKIAELKALRERNGLEYLIEVDGS-CNQKTYEKLMEAGADVFIV 196 (229)
T ss_pred HHHHHHHHh---cCEEEEEEEcCCCcchhccHHHHHHHHHHHHHHHhcCCCeEEEEECC-CCHHHHHHHHHcCCCEEEE
Confidence 455565553 467899999997532 234444444 3342 2333222 3477888889999987743
No 220
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=22.80 E-value=2.8e+02 Score=25.33 Aligned_cols=65 Identities=23% Similarity=0.215 Sum_probs=40.4
Q ss_pred CCcHHHHHHHHHhCCCCCEEEEEecCCC-CChHHHHHHHHHCCCeeeecCCcCCHHHHHHHHHCCCCeEee
Q psy12256 112 TFDKGFDSVREVYGNLSNIAIITLAPEL-AGSMEVIDKLVEQGITVSLGHSSADINIAEEAVRHGASLITH 181 (417)
Q Consensus 112 ~~~~~~~~~~~~~g~~~~ik~~~~~pe~-~~~~~~i~~~~~~gi~v~~GH~~~~~~~~~~a~~~G~~~i~H 181 (417)
+|+..++.+.++ | ..++|+++|. ....+.+.+.+++|++..+--.+.+.-+..+-+-.-++.+.-
T Consensus 72 ~p~~~i~~fa~a-g----ad~It~H~E~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp~~~i~~~l~~vD~Vll 137 (220)
T COG0036 72 NPDRYIEAFAKA-G----ADIITFHAEATEHIHRTIQLIKELGVKAGLVLNPATPLEALEPVLDDVDLVLL 137 (220)
T ss_pred CHHHHHHHHHHh-C----CCEEEEEeccCcCHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhhCCEEEE
Confidence 344556676664 3 3457999995 456799999999999886643334444444433334444443
No 221
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=22.73 E-value=2.8e+02 Score=28.64 Aligned_cols=40 Identities=15% Similarity=0.322 Sum_probs=33.0
Q ss_pred CChHHHHHHHHHC--CCeeeecCCcCCHHHHHHHHHCCCCeEe
Q psy12256 140 AGSMEVIDKLVEQ--GITVSLGHSSADINIAEEAVRHGASLIT 180 (417)
Q Consensus 140 ~~~~~~i~~~~~~--gi~v~~GH~~~~~~~~~~a~~~G~~~i~ 180 (417)
....+.++++++. ++.+..|.. .++++++.++++|++.+-
T Consensus 253 ~~~~~~i~~ik~~~p~~~v~agnv-~t~~~a~~l~~aGad~v~ 294 (479)
T PRK07807 253 EKMLEALRAVRALDPGVPIVAGNV-VTAEGTRDLVEAGADIVK 294 (479)
T ss_pred HHHHHHHHHHHHHCCCCeEEeecc-CCHHHHHHHHHcCCCEEE
Confidence 4457888998887 577777777 789999999999999885
No 222
>KOG2902|consensus
Probab=22.66 E-value=3.6e+02 Score=25.11 Aligned_cols=14 Identities=14% Similarity=0.005 Sum_probs=11.6
Q ss_pred eccchhhcccCCCC
Q psy12256 14 APGFIDIQINGGFG 27 (417)
Q Consensus 14 ~PG~ID~H~H~~~g 27 (417)
+|+.-|+|+|...|
T Consensus 7 i~~~~DmHvHlR~g 20 (344)
T KOG2902|consen 7 ITQPDDMHVHLRDG 20 (344)
T ss_pred cCCccceeEEeccC
Confidence 68889999998754
No 223
>PRK09875 putative hydrolase; Provisional
Probab=22.49 E-value=2.1e+02 Score=27.40 Aligned_cols=44 Identities=9% Similarity=0.157 Sum_probs=26.1
Q ss_pred cchhhcccCCCCCC-CCCCC---CCcHHHHHHHHHHHHhCCceeeeec
Q psy12256 16 GFIDIQINGGFGVD-FSHDI---DSVDKNVSIVARGILAHGVTSFCPT 59 (417)
Q Consensus 16 G~ID~H~H~~~g~~-~~~~~---~~~~~~~~~~~~~~~~~GvTt~~~~ 59 (417)
|+..+|=|..-..+ ..... ....+....-++.+.+.|+.|+++.
T Consensus 7 G~tl~HEHl~~~~~~~~~~~~~~l~~~~~~~~el~~~~~~Gg~tiVd~ 54 (292)
T PRK09875 7 GYTLAHEHLHIDLSGFKNNVDCRLDQYAFICQEMNDLMTRGVRNVIEM 54 (292)
T ss_pred CcceecCCeEecChhhcCCcccccccHHHHHHHHHHHHHhCCCeEEec
Confidence 88899999863221 11101 1123334444566788999999975
No 224
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=22.37 E-value=1.6e+02 Score=27.48 Aligned_cols=68 Identities=22% Similarity=0.194 Sum_probs=38.4
Q ss_pred HHHHHHHHHhCC-CCCEEEE----EecCCCCChHHHHHHHHHCCCeeeecCCc-------CCHHH-HHHHHHCCCCeEee
Q psy12256 115 KGFDSVREVYGN-LSNIAII----TLAPELAGSMEVIDKLVEQGITVSLGHSS-------ADINI-AEEAVRHGASLITH 181 (417)
Q Consensus 115 ~~~~~~~~~~g~-~~~ik~~----~~~pe~~~~~~~i~~~~~~gi~v~~GH~~-------~~~~~-~~~a~~~G~~~i~H 181 (417)
..++++.+.+|. .|.+|+- .+.|+ .-..+.|+.++++|+.++.|.+- ..+++ ...+.+.|.+.++-
T Consensus 25 ~~~~dlLe~ag~yID~~K~g~Gt~~l~~~-~~l~eki~l~~~~gV~v~~GGtl~E~a~~q~~~~~yl~~~k~lGf~~IEi 103 (244)
T PF02679_consen 25 RYLEDLLESAGDYIDFLKFGWGTSALYPE-EILKEKIDLAHSHGVYVYPGGTLFEVAYQQGKFDEYLEECKELGFDAIEI 103 (244)
T ss_dssp HHHHHHHHHHGGG-SEEEE-TTGGGGSTC-HHHHHHHHHHHCTT-EEEE-HHHHHHHHHTT-HHHHHHHHHHCT-SEEEE
T ss_pred HHHHHHHHHhhhhccEEEecCceeeecCH-HHHHHHHHHHHHcCCeEeCCcHHHHHHHhcChHHHHHHHHHHcCCCEEEe
Confidence 467888887765 4556754 33454 22468999999999999999552 12222 22344567766665
Q ss_pred CC
Q psy12256 182 LF 183 (417)
Q Consensus 182 l~ 183 (417)
-.
T Consensus 104 Sd 105 (244)
T PF02679_consen 104 SD 105 (244)
T ss_dssp --
T ss_pred cC
Confidence 33
No 225
>cd00957 Transaldolase_TalAB Transaldolases including both TalA and TalB. The enzyme catalyses the reversible transfer of a dyhydroxyacetone moiety, derived from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. The catalytic mechanism is similar to other class I aldolases. The enzyme is found in the non-oxidative branch of the pentose phosphate pathway and forms a dimer in solution.
Probab=22.03 E-value=1.6e+02 Score=28.61 Aligned_cols=53 Identities=21% Similarity=0.362 Sum_probs=40.2
Q ss_pred ecCCCCChHHHHHHHHHCCCeeeecCCcCCHHHHHHHHHCCCCeEeeCCCCcccc
Q psy12256 135 LAPELAGSMEVIDKLVEQGITVSLGHSSADINIAEEAVRHGASLITHLFNAMLPF 189 (417)
Q Consensus 135 ~~pe~~~~~~~i~~~~~~gi~v~~GH~~~~~~~~~~a~~~G~~~i~Hl~~~~~~~ 189 (417)
++.-+.+ .++++.+.+.||.+.+- .-.+..++..+.++|+..+..+.+-+.-+
T Consensus 131 IPaT~eG-i~A~~~L~~~GI~vn~T-lvFS~~Qa~~aa~AGa~~ISPfVgRi~d~ 183 (313)
T cd00957 131 IAATWEG-IQAAKQLEKEGIHCNLT-LLFSFAQAVACAEAGVTLISPFVGRILDW 183 (313)
T ss_pred eCCCHHH-HHHHHHHHHCCCceeee-eecCHHHHHHHHHcCCCEEEeecchHHHh
Confidence 3333344 58999999999998752 23678999999999999999988766543
No 226
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=21.86 E-value=2e+02 Score=24.71 Aligned_cols=37 Identities=19% Similarity=0.190 Sum_probs=30.3
Q ss_pred HHHHHHHHHCCCeeeecCCcCCHHHHHHHHHCCCCeEe
Q psy12256 143 MEVIDKLVEQGITVSLGHSSADINIAEEAVRHGASLIT 180 (417)
Q Consensus 143 ~~~i~~~~~~gi~v~~GH~~~~~~~~~~a~~~G~~~i~ 180 (417)
.+.++.++++|+.+.+ .+..+.++.+.++..|++.++
T Consensus 150 ~~~i~~~~~~g~~v~~-wtvn~~~~~~~~~~~GVdgI~ 186 (189)
T cd08556 150 PELVRAAHAAGLKVYV-WTVNDPEDARRLLALGVDGII 186 (189)
T ss_pred HHHHHHHHHcCCEEEE-EcCCCHHHHHHHHHCCCCEEe
Confidence 6889999999999876 565667788888889988775
No 227
>PRK12346 transaldolase A; Provisional
Probab=21.68 E-value=1.9e+02 Score=28.06 Aligned_cols=53 Identities=21% Similarity=0.341 Sum_probs=40.5
Q ss_pred ecCCCCChHHHHHHHHHCCCeeeecCCcCCHHHHHHHHHCCCCeEeeCCCCcccc
Q psy12256 135 LAPELAGSMEVIDKLVEQGITVSLGHSSADINIAEEAVRHGASLITHLFNAMLPF 189 (417)
Q Consensus 135 ~~pe~~~~~~~i~~~~~~gi~v~~GH~~~~~~~~~~a~~~G~~~i~Hl~~~~~~~ 189 (417)
++.-+.+ .++++.+.+.||.+-+- .-.+..++..+.++|+..|..+.+-+..+
T Consensus 132 IPaT~eG-i~A~~~L~~~GI~~n~T-liFS~~Qa~~aa~AGa~~ISPfVgRi~d~ 184 (316)
T PRK12346 132 LASTWEG-IRAAEELEKEGINCNLT-LLFSFAQARACAEAGVFLISPFVGRIYDW 184 (316)
T ss_pred eCCCHHH-HHHHHHHHHCCCceeEE-EecCHHHHHHHHHcCCCEEEecccHHHHh
Confidence 3333444 58999999999988752 23678999999999999999988766543
No 228
>cd08582 GDPD_like_2 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=21.18 E-value=1.9e+02 Score=26.26 Aligned_cols=37 Identities=22% Similarity=0.332 Sum_probs=30.3
Q ss_pred HHHHHHHHHCCCeeeecCCcCCHHHHHHHHHCCCCeEe
Q psy12256 143 MEVIDKLVEQGITVSLGHSSADINIAEEAVRHGASLIT 180 (417)
Q Consensus 143 ~~~i~~~~~~gi~v~~GH~~~~~~~~~~a~~~G~~~i~ 180 (417)
.+.++.+++.|+++.+ .+.-+.++++..++.|++.+.
T Consensus 191 ~~~v~~~~~~G~~v~~-wTvn~~~~~~~l~~~GVdgi~ 227 (233)
T cd08582 191 PAFIKALRDAGLKLNV-WTVDDAEDAKRLIELGVDSIT 227 (233)
T ss_pred HHHHHHHHHCCCEEEE-EeCCCHHHHHHHHHCCCCEEE
Confidence 5889999999999976 565667888888888987764
No 229
>TIGR00874 talAB transaldolase. This family includes the majority of known and predicted transaldolase sequences, including E. coli TalA and TalB. It excluded two other families. The first includes E. coli transaldolase-like protein TalC. The second family includes the putative transaldolases of Helicobacter pylori and Mycobacterium tuberculosis.
Probab=21.15 E-value=1.7e+02 Score=28.42 Aligned_cols=50 Identities=18% Similarity=0.282 Sum_probs=39.0
Q ss_pred CCCChHHHHHHHHHCCCeeeecCCcCCHHHHHHHHHCCCCeEeeCCCCcccc
Q psy12256 138 ELAGSMEVIDKLVEQGITVSLGHSSADINIAEEAVRHGASLITHLFNAMLPF 189 (417)
Q Consensus 138 e~~~~~~~i~~~~~~gi~v~~GH~~~~~~~~~~a~~~G~~~i~Hl~~~~~~~ 189 (417)
-+.+ .++++.+.+.||.+-+- .-.+..++..+.++|+..|..+.+-+.-+
T Consensus 134 T~eG-i~A~~~L~~~GI~vN~T-liFS~~Qa~aaa~AGa~~ISPFVgRi~dw 183 (317)
T TIGR00874 134 TWEG-IRAAEELEKEGIHCNLT-LLFSFVQAIACAEAKVTLISPFVGRILDW 183 (317)
T ss_pred CHHH-HHHHHHHHHCCCceeee-eecCHHHHHHHHHcCCCEEEeecchHhHh
Confidence 3444 58899999999998652 22678999999999999999988766443
No 230
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=20.73 E-value=53 Score=24.86 Aligned_cols=26 Identities=27% Similarity=0.418 Sum_probs=14.4
Q ss_pred cccCCCccEEEEcCCCceeEEEECCE
Q psy12256 388 LDFGADADFVILDEGLHVYSTWIAGD 413 (417)
Q Consensus 388 l~~G~~ADlvv~d~~~~v~~v~~~G~ 413 (417)
..-|..+||+|.|.+++..-.|-+|+
T Consensus 20 f~sgq~~D~~v~d~~g~~vwrwS~~~ 45 (82)
T PF12690_consen 20 FPSGQRYDFVVKDKEGKEVWRWSDGK 45 (82)
T ss_dssp ESSS--EEEEEE-TT--EEEETTTT-
T ss_pred eCCCCEEEEEEECCCCCEEEEecCCc
Confidence 45789999999998766555555544
No 231
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=20.71 E-value=7.3e+02 Score=23.52 Aligned_cols=123 Identities=17% Similarity=0.229 Sum_probs=59.7
Q ss_pred HHHHHhCCceeee-eccCCCCH-HHHHHHHHHHHcCCCCCCCceeEEeeeeC--CCCCCCCCCCCC-CcccCCCcHHHHH
Q psy12256 45 ARGILAHGVTSFC-PTLVTSEP-QVYKKVLSRLRKTPGGKHGATVLGAHVEG--PFISPDKKGAHS-LSKIVTFDKGFDS 119 (417)
Q Consensus 45 ~~~~~~~GvTt~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~G~~leG--p~~~~~~~G~~~-~~~~~~~~~~~~~ 119 (417)
....++.|.||+. |. ..-|. +.+....+..+-+ .-.|+.+|+ ..+.....+... ...+.+| ++..+
T Consensus 85 i~~ai~~GftSVMiD~-S~l~~eeNi~~t~~vv~~a-------h~~gv~VEaElG~i~g~e~~~~~~~~~~T~p-e~a~~ 155 (276)
T cd00947 85 IKRAIRAGFSSVMIDG-SHLPFEENVAKTKEVVELA-------HAYGVSVEAELGRIGGEEDGVVGDEGLLTDP-EEAEE 155 (276)
T ss_pred HHHHHHhCCCEEEeCC-CCCCHHHHHHHHHHHHHHH-------HHcCCeEEEEEeeecCccCCcccccccCCCH-HHHHH
Confidence 3456788999997 43 23333 3444444443322 222444432 122111111111 1233444 45666
Q ss_pred HHHHhCCCCCEEEE--Ee-------cCCCCChHHHHHHHHHC-CCeeee-cCCcCCHHHHHHHHHCCCCeE
Q psy12256 120 VREVYGNLSNIAII--TL-------APELAGSMEVIDKLVEQ-GITVSL-GHSSADINIAEEAVRHGASLI 179 (417)
Q Consensus 120 ~~~~~g~~~~ik~~--~~-------~pe~~~~~~~i~~~~~~-gi~v~~-GH~~~~~~~~~~a~~~G~~~i 179 (417)
|.+.-| .|.+.+- ++ .|++. .+.++++++. +++..+ |-|.-..++.+++++.|+.-+
T Consensus 156 Fv~~Tg-vD~LAvsiGt~HG~Y~~~~p~L~--~~~L~~i~~~~~vPLVlHGgSG~~~e~~~~ai~~Gi~Ki 223 (276)
T cd00947 156 FVEETG-VDALAVAIGTSHGAYKGGEPKLD--FDRLKEIAERVNVPLVLHGGSGIPDEQIRKAIKLGVCKI 223 (276)
T ss_pred HHHHHC-CCEEEeccCccccccCCCCCccC--HHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHcCCeEE
Confidence 666543 3444321 12 35543 3455555554 665555 333245678899999997544
No 232
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=20.54 E-value=7.1e+02 Score=23.35 Aligned_cols=132 Identities=19% Similarity=0.297 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhCCceeeeeccCCCCHHHHHHHHHHHHcCCCCCCCceeEEeeeeCCCCCCCCCCCCCCcccCCCcHHHH
Q psy12256 39 KNVSIVARGILAHGVTSFCPTLVTSEPQVYKKVLSRLRKTPGGKHGATVLGAHVEGPFISPDKKGAHSLSKIVTFDKGFD 118 (417)
Q Consensus 39 ~~~~~~~~~~~~~GvTt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~leGp~~~~~~~G~~~~~~~~~~~~~~~ 118 (417)
+-.+...+...++|+..+.-..-.++.+.+.+.++..++. |..+.. .++....+..+++++. +..+
T Consensus 91 ~~~~~di~~~~~~g~~~iri~~~~~~~~~~~~~i~~ak~~----------G~~v~~-~i~~~~~~~~~~~~~~---~~~~ 156 (275)
T cd07937 91 DVVELFVEKAAKNGIDIFRIFDALNDVRNLEVAIKAVKKA----------GKHVEG-AICYTGSPVHTLEYYV---KLAK 156 (275)
T ss_pred HHHHHHHHHHHHcCCCEEEEeecCChHHHHHHHHHHHHHC----------CCeEEE-EEEecCCCCCCHHHHH---HHHH
Q ss_pred HHHHHhCCCCCEEEEEecCCC--CChHHHHHHHHHC-CCeeeec-CCc--CCHHHHHHHHHCCCCeEeeCCCCc
Q psy12256 119 SVREVYGNLSNIAIITLAPEL--AGSMEVIDKLVEQ-GITVSLG-HSS--ADINIAEEAVRHGASLITHLFNAM 186 (417)
Q Consensus 119 ~~~~~~g~~~~ik~~~~~pe~--~~~~~~i~~~~~~-gi~v~~G-H~~--~~~~~~~~a~~~G~~~i~Hl~~~~ 186 (417)
++.+. +.+.|.+....--. ..+.+.++.+++. ++.+.++ |.. ........|+++|++.+.-..+++
T Consensus 157 ~~~~~--Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~l~~H~Hnd~GlA~aN~laA~~aGa~~vd~sv~Gl 228 (275)
T cd07937 157 ELEDM--GADSICIKDMAGLLTPYAAYELVKALKKEVGLPIHLHTHDTSGLAVATYLAAAEAGVDIVDTAISPL 228 (275)
T ss_pred HHHHc--CCCEEEEcCCCCCCCHHHHHHHHHHHHHhCCCeEEEEecCCCChHHHHHHHHHHhCCCEEEEecccc
No 233
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=20.07 E-value=3.5e+02 Score=27.23 Aligned_cols=64 Identities=11% Similarity=0.178 Sum_probs=41.6
Q ss_pred HHHHHHHHHhCCCCCEEEEEecCCCCChHHHHHHHHHC--CCeeeecCCcCCHHHHHHHHHCCCCeEee
Q psy12256 115 KGFDSVREVYGNLSNIAIITLAPELAGSMEVIDKLVEQ--GITVSLGHSSADINIAEEAVRHGASLITH 181 (417)
Q Consensus 115 ~~~~~~~~~~g~~~~ik~~~~~pe~~~~~~~i~~~~~~--gi~v~~GH~~~~~~~~~~a~~~G~~~i~H 181 (417)
+.++.+.++ | .+.|.+=+.++......+.++++++. +..+..|.. .++++++.++++|++.+-.
T Consensus 156 ~~v~~lv~a-G-vDvI~iD~a~g~~~~~~~~v~~ik~~~p~~~vi~g~V-~T~e~a~~l~~aGaD~I~v 221 (404)
T PRK06843 156 ERVEELVKA-H-VDILVIDSAHGHSTRIIELVKKIKTKYPNLDLIAGNI-VTKEAALDLISVGADCLKV 221 (404)
T ss_pred HHHHHHHhc-C-CCEEEEECCCCCChhHHHHHHHHHhhCCCCcEEEEec-CCHHHHHHHHHcCCCEEEE
Confidence 345666553 3 44444333344334456788888875 455555555 7899999999999999874
Done!