RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12256
(417 letters)
>gnl|CDD|238434 cd00854, NagA, N-acetylglucosamine-6-phosphate deacetylase, NagA,
catalyzes the hydrolysis of the N-acetyl group of
N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to
glucosamine 6-phosphate and acetate. This is the first
committed step in the biosynthetic pathway to
amino-sugar-nucleotides, which is needed for cell wall
peptidoglycan and teichoic acid biosynthesis.
Deacetylation of N-acetylglucosamine is also important
in lipopolysaccharide synthesis and cell wall recycling.
Length = 374
Score = 307 bits (788), Expect = e-102
Identities = 143/418 (34%), Positives = 196/418 (46%), Gaps = 94/418 (22%)
Query: 5 RFDCGGKLIAPGFIDIQINGGFGVDFSHDIDSVDKNVSIVARGILAHGVTSFCPTLVTSE 64
D G+ + PGFIDI I+GG G DF D + + +A + HG TSF PT VT+
Sbjct: 41 IIDLKGQYLVPGFIDIHIHGGGGADFM---DGTAEALKTIAEALAKHGTTSFLPTTVTAP 97
Query: 65 PQVYKKVLSRLRKTPGGKHGATVLGAHVEGPFISPDKKGAHSLSKIVTFDKG-FDSVREV 123
P+ K L+ + + GA +LG H+EGPFISP+KKGAH + D E
Sbjct: 98 PEEIAKALAAIAEAIAEGQGAEILGIHLEGPFISPEKKGAHPPEYLRAPDPEELKKWLEA 157
Query: 124 YGNLSNIAIITLAPELAGSMEVIDKLVEQGITVSLGHSSADINIAEEAVRHGASLITHLF 183
G I ++TLAPEL G++E+I LVE+GI VS+GHS A A A GA+ +THLF
Sbjct: 158 AGG--LIKLVTLAPELDGALELIRYLVERGIIVSIGHSDATYEQAVAAFEAGATHVTHLF 215
Query: 184 NAMLPFHHRDPGIIG-LLSSDNIDSSKVYYGIIADGVHTHPSALRIANSTHPEGHSSADI 242
NAM P HHR+PG++G LS D++ Y +IADG+H HP+A+R+A
Sbjct: 216 NAMSPLHHREPGVVGAALSDDDV-----YAELIADGIHVHPAAVRLAYRAKG-------- 262
Query: 243 HIAEEAVRHGASLITHLFNAMLPFHHRDPGIIGLLSSDNIDSSKVYYGIIADGVHT---- 298
L+T +AM GL DG +
Sbjct: 263 -------ADKIVLVT---DAMAA--------AGL----------------PDGEYELGGQ 288
Query: 299 ----HPSALRIANSTHPEGSITPFNGCVQFFMRSTRCSLWFDLGNCNNGGSITPFNGCVQ 354
R+A+ T GS + V+ ++ C L
Sbjct: 289 TVTVKDGVARLADGT-LAGSTLTMDQAVRNMVKWGGCPLE-------------------- 327
Query: 355 FFMRSTRCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILDEGLHVYSTWIAG 412
A+ +ASL+PAK LGL+ KG+L G DAD V+LD+ L+V +TWI G
Sbjct: 328 -----------EAVRMASLNPAKLLGLDDRKGSLKPGKDADLVVLDDDLNVKATWING 374
>gnl|CDD|224733 COG1820, NagA, N-acetylglucosamine-6-phosphate deacetylase
[Carbohydrate transport and metabolism].
Length = 380
Score = 217 bits (554), Expect = 8e-67
Identities = 101/226 (44%), Positives = 136/226 (60%), Gaps = 12/226 (5%)
Query: 6 FDCGGKLIAPGFIDIQINGGFGVDFSHDIDSVDKNVSIVARGILAHGVTSFCPTLVTSEP 65
D G L+ PGFID+ I+GG G DF D SV+ + +A L HG TSF PTL+T+
Sbjct: 43 IDLKGALLVPGFIDLHIHGGGGADFM-DAGSVE-TLETMAEAHLRHGTTSFLPTLITASL 100
Query: 66 QVYKKVLSRLRKTPGGKHGATVLGAHVEGPFISPDKKGAHSLSKIVT-FDKGFDSVREVY 124
+ K L +R+ K GA +LG H+EGPF+SP+KKGAH+ I + + +
Sbjct: 101 EKIKAALRAIREAIA-KGGAQILGIHLEGPFLSPEKKGAHNPEYIRPPDPEELEQLIAAA 159
Query: 125 GNLSNIAIITLAPELAGSMEVIDKLVEQGITVSLGHSSADINIAEEAVRHGASLITHLFN 184
L I ++TLAPEL G+ E+I L GI VS+GHS+A A A GA+ +THLFN
Sbjct: 160 DGL--IKLVTLAPELDGTKELIRLLANAGIVVSIGHSNATYEQARAAFEAGATFVTHLFN 217
Query: 185 AMLPFHHRDPGIIG-LLSSDNIDSSKVYYGIIADGVHTHPSALRIA 229
AM HHR+PG++G L + + VY IIADGVH HP+A+R+A
Sbjct: 218 AMSGLHHREPGVVGAALDNPD-----VYAEIIADGVHVHPAAIRLA 258
Score = 139 bits (352), Expect = 2e-37
Identities = 68/196 (34%), Positives = 96/196 (48%), Gaps = 25/196 (12%)
Query: 236 GHSSADIHIAEEAVRHGASLITHLFNAMLPFHHRDPGIIG-LLSSDNIDSSKVYYGIIAD 294
GHS+A A A GA+ +THLFNAM HHR+PG++G L + + VY IIAD
Sbjct: 192 GHSNATYEQARAAFEAGATFVTHLFNAMSGLHHREPGVVGAALDNPD-----VYAEIIAD 246
Query: 295 GVHTHPSALRIANSTHPEGSITPFNGCV---------------QFFMRSTRCSLWFDLGN 339
GVH HP+A+R+A I + + L +
Sbjct: 247 GVHVHPAAIRLALKAKGGDKIVLVTDAMAAAGLPDGEYILGGQTVTVADGARRL----ED 302
Query: 340 CNNGGSITPFNGCVQFFMRSTRCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVIL 399
GS + V+ + SL A+ +ASL+PAKALGL+ G++ G DAD V+L
Sbjct: 303 GTLAGSTLTMDEAVRNLVEWGGISLAEAVRMASLNPAKALGLDDRLGSIKPGKDADLVVL 362
Query: 400 DEGLHVYSTWIAGDLK 415
D+ L+V +TWI G+
Sbjct: 363 DDDLNVKATWINGEKV 378
>gnl|CDD|232881 TIGR00221, nagA, N-acetylglucosamine-6-phosphate deacetylase.
[Central intermediary metabolism, Amino sugars].
Length = 380
Score = 176 bits (449), Expect = 2e-51
Identities = 89/223 (39%), Positives = 128/223 (57%), Gaps = 8/223 (3%)
Query: 7 DCGGKLIAPGFIDIQINGGFGVDFSHDIDSVDKNVSIVARGILAHGVTSFCPTLVTSEPQ 66
D G ++ PGFIDI I+G GVD + D+ + + I++ + G TSF PTL+T +
Sbjct: 48 DLPGNVLTPGFIDIHIHGCGGVDTN---DASFETLEIMSERLPKSGCTSFLPTLITQPDE 104
Query: 67 VYKKVLSRLRKTPGGKHGATVLGAHVEGPFISPDKKGAHSLSKIVTFDKGFDSVREVYGN 126
K+ + +R+ + A LG H+EGPF+SP+KKGAH I D + +
Sbjct: 105 NIKQAVKNMREYLAKEKNAQALGLHLEGPFLSPEKKGAHPPEYIREPDVEL-FKKFLCEA 163
Query: 127 LSNIAIITLAPELAGSMEVIDKLVEQGITVSLGHSSADINIAEEAVRHGASLITHLFNAM 186
I +TLAPE E+I L + GI VS GH++A +A+ A + GA+ THL+NAM
Sbjct: 164 GGVITKVTLAPEEDQHFELIRHLKDAGIIVSAGHTNATYELAKAAFKAGATHATHLYNAM 223
Query: 187 LPFHHRDPGIIGLLSSDNIDSSKVYYGIIADGVHTHPSALRIA 229
P HHR+PG+IG + +D VY IIADG+H HP +R+A
Sbjct: 224 SPIHHREPGVIGAV----LDHDDVYTEIIADGIHIHPLNIRLA 262
Score = 109 bits (274), Expect = 1e-26
Identities = 64/193 (33%), Positives = 97/193 (50%), Gaps = 25/193 (12%)
Query: 236 GHSSADIHIAEEAVRHGASLITHLFNAMLPFHHRDPGIIGLLSSDNIDSSKVYYGIIADG 295
GH++A +A+ A + GA+ THL+NAM P HHR+PG+IG + +D VY IIADG
Sbjct: 196 GHTNATYELAKAAFKAGATHATHLYNAMSPIHHREPGVIGAV----LDHDDVYTEIIADG 251
Query: 296 VHTHPSALRIA-------------NSTHPEGS---ITPFNGCVQFFMRSTRCSLWFDLGN 339
+H HP +R+A +S G+ + F G ++R C D
Sbjct: 252 IHIHPLNIRLAKKLKGDSKLCLVTDSMAAAGAKDGVFIFGG-KTVYIREGTC---LDSNG 307
Query: 340 CNNGGSITPFNGCVQFFMRSTRCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVIL 399
G S+T G + + T SL A ++SL+PA+ALG++ G++ G DA+ V+
Sbjct: 308 TLAGSSLTMIEG-ARNLVEFTNISLTDAARMSSLNPARALGIDDRLGSVTVGKDANLVVF 366
Query: 400 DEGLHVYSTWIAG 412
V T + G
Sbjct: 367 TPDFEVILTIVNG 379
>gnl|CDD|183010 PRK11170, nagA, N-acetylglucosamine-6-phosphate deacetylase;
Provisional.
Length = 382
Score = 171 bits (435), Expect = 3e-49
Identities = 87/226 (38%), Positives = 129/226 (57%), Gaps = 9/226 (3%)
Query: 5 RFDCGGKLIAPGFIDIQINGGFGVDFSHDIDSVD-KNVSIVARGILAHGVTSFCPTLVTS 63
+ D G +++PGFID+Q+NG GV F+ +++ + + I+ + G TSF PTL+TS
Sbjct: 43 QRDLNGAILSPGFIDLQLNGCGGVQFNDTAEAISVETLEIMQKANEKSGCTSFLPTLITS 102
Query: 64 EPQVYKKVLSRLRKTPGGKHGATVLGAHVEGPFISPDKKGAHSLSKIVTFDKGFDSVREV 123
++ K+ + +R+ KH LG H+EGP+++ KKG H+ I D + V +
Sbjct: 103 SDELMKQAVRVMREYLA-KHPNQALGLHLEGPYLNLVKKGTHNPEFIRKPDA--EMVDFL 159
Query: 124 YGNLSNIAIITLAPELAGSMEVIDKLVEQGITVSLGHSSADINIAEEAVRHGASLITHLF 183
N I +TLAPE+ EVI KLVE GI VS GHS+A A+ R G + THL+
Sbjct: 160 CENADVITKVTLAPEMV-DAEVIRKLVEAGIVVSAGHSNATYEEAKAGFRAGITFATHLY 218
Query: 184 NAMLPFHHRDPGIIGLLSSDNIDSSKVYYGIIADGVHTHPSALRIA 229
NAM R+PG++G + +D VY GIIADG+H + +R A
Sbjct: 219 NAMPYITGREPGLVGAI----LDEPDVYCGIIADGLHVDYANIRNA 260
Score = 81.9 bits (203), Expect = 5e-17
Identities = 55/196 (28%), Positives = 93/196 (47%), Gaps = 22/196 (11%)
Query: 236 GHSSADIHIAEEAVRHGASLITHLFNAMLPFHHRDPGIIGLLSSDNIDSSKVYYGIIADG 295
GHS+A A+ R G + THL+NAM R+PG++G + +D VY GIIADG
Sbjct: 194 GHSNATYEEAKAGFRAGITFATHLYNAMPYITGREPGLVGAI----LDEPDVYCGIIADG 249
Query: 296 VHTHPSALRIA------------NSTHPEGS-ITPFNGC-VQFFMRSTRCSLWFDLGNCN 341
+H + +R A ++T P G+ I F + R C D
Sbjct: 250 LHVDYANIRNAKRLKGDKLCLVTDATAPAGANIEQFIFAGKTIYYRDGLC---VDENGTL 306
Query: 342 NGGSITPFNGCVQFFMRSTRCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILDE 401
+G ++T V+ + +L AL +A+L+PA+A+G+++ G+++ G A+
Sbjct: 307 SGSALTMIEA-VRNLVEHVGIALDEALRMATLYPARAIGVDKRLGSIEAGKVANLTAFTR 365
Query: 402 GLHVYSTWIAGDLKLT 417
+ T + G+ +T
Sbjct: 366 DFKITKTIVNGNEVVT 381
>gnl|CDD|216825 pfam01979, Amidohydro_1, Amidohydrolase family. This family of
enzymes are a a large metal dependent hydrolase
superfamily. The family includes Adenine deaminase
EC:3.5.4.2 that hydrolyses adenine to form hypoxanthine
and ammonia. Adenine deaminases reaction is important
for adenine utilisation as a purine and also as a
nitrogen source. This family also includes
dihydroorotase and N-acetylglucosamine-6-phosphate
deacetylases, EC:3.5.1.25 These enzymes catalyze the
reaction N-acetyl-D-glucosamine 6-phosphate + H2O <=>
D-glucosamine 6-phosphate + acetate. This family
includes the catalytic domain of urease alpha subunit.
Dihydroorotases (EC:3.5.2.3) are also included.
Length = 307
Score = 44.2 bits (104), Expect = 8e-05
Identities = 18/39 (46%), Positives = 29/39 (74%)
Query: 362 CSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILD 400
S + AL +A+++PAKALGL+ G+++ G DAD V++D
Sbjct: 269 LSPIEALRMATINPAKALGLDDRVGSIEVGKDADLVVVD 307
>gnl|CDD|182623 PRK10657, PRK10657, isoaspartyl dipeptidase; Provisional.
Length = 388
Score = 43.7 bits (104), Expect = 1e-04
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 367 ALEVASLHPAKALGLEQHKGTLDFGADADFVILDEGLHVYSTWIAG 412
AL+ + + A+ L L KG + G DAD ++LD+ L + G
Sbjct: 328 ALKPLTSNVARFLKLN-GKGEILPGKDADLLVLDDDLRIEQVIAKG 372
Score = 30.2 bits (69), Expect = 1.9
Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
Query: 7 DCGGKLIAPGFID--IQINGGFG 27
D GK++ PGFID + I GG G
Sbjct: 48 DASGKILVPGFIDQHVHIIGGGG 70
>gnl|CDD|236478 PRK09356, PRK09356, imidazolonepropionase; Validated.
Length = 406
Score = 43.6 bits (104), Expect = 1e-04
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 351 GCVQFFMRSTRCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILD 400
C F + + AL +++ A+ALG + G+L+ G AD VI D
Sbjct: 334 ACTLFRL-----TPEEALAAVTINAARALGRQDTHGSLEVGKKADLVIWD 378
Score = 29.8 bits (68), Expect = 2.9
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 5 RFDCGGKLIAPGFID 19
D GGKL+ PG ID
Sbjct: 55 VIDAGGKLVTPGLID 69
>gnl|CDD|219672 pfam07969, Amidohydro_3, Amidohydrolase family.
Length = 392
Score = 42.9 bits (101), Expect = 2e-04
Identities = 23/53 (43%), Positives = 26/53 (49%)
Query: 346 ITPFNGCVQFFMRSTRCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVI 398
T + R SL AL + + PA ALGLE KGTL G DAD VI
Sbjct: 340 RTAEMLEGRVLKPDERLSLEEALALYTRGPAYALGLEDRKGTLAVGKDADLVI 392
>gnl|CDD|238621 cd01296, Imidazolone-5PH,
Imidazolonepropionase/imidazolone-5-propionate hydrolase
(Imidazolone-5PH) catalyzes the third step in the
histidine degradation pathway, the hydrolysis of
(S)-3-(5-oxo-4,5-dihydro-3H-imidazol-4-yl)propanoate to
N-formimidoyl-L-glutamate. In bacteria, the enzyme is
part of histidine utilization (hut) operon.
Length = 371
Score = 42.6 bits (101), Expect = 3e-04
Identities = 17/34 (50%), Positives = 23/34 (67%)
Query: 367 ALEVASLHPAKALGLEQHKGTLDFGADADFVILD 400
AL A+++ A ALGL + G+L+ G AD VILD
Sbjct: 315 ALTAATINAAAALGLGETVGSLEVGKQADLVILD 348
Score = 28.4 bits (64), Expect = 7.8
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 9/84 (10%)
Query: 7 DCGGKLIAPGFIDIQINGGFGVDFSHDID---SVDKNVSIVARGILAHGVTSFC-PTLVT 62
D GG+ + PG +D + F D + + I+A G G+ S T
Sbjct: 29 DAGGRAVTPGLVDCHTHLVFAGDRVDEFAARLAGASYEEILAAG---GGILSTVRATRAA 85
Query: 63 SEPQVYKKVLSRLRKTPGGKHGAT 86
SE +++ L RL + +HG T
Sbjct: 86 SEDELFASALRRLARML--RHGTT 107
>gnl|CDD|235732 PRK06189, PRK06189, allantoinase; Provisional.
Length = 451
Score = 42.4 bits (100), Expect = 4e-04
Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 363 SLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILD 400
L + + +PAK GL Q KG L+ GADADFV++D
Sbjct: 354 PLETIARLLATNPAKRFGLPQ-KGRLEVGADADFVLVD 390
>gnl|CDD|233321 TIGR01224, hutI, imidazolonepropionase. This enzyme catalyzes the
third step in histidine degradation [Energy metabolism,
Amino acids and amines].
Length = 377
Score = 41.6 bits (98), Expect = 4e-04
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
Query: 356 FMRSTRCSLVH-----ALEVASLHPAKALGLEQHKGTLDFGADADFVILDEGLHVY-STW 409
+ S C L+ AL A+++ A ALGL + +GTL+ G DAD VIL +
Sbjct: 303 LIMSLACRLMKMTPEEALHAATVNAAYALGLGEERGTLEAGRDADLVILSAPSYAEIPYH 362
Query: 410 IAGDL 414
+
Sbjct: 363 YGVNH 367
Score = 29.7 bits (67), Expect = 2.8
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Query: 7 DCGGKLIAPGFIDIQINGGFGVDFSHDIDSVDKNVS---IVARGILAHGVTSFC-PTLVT 62
DCGG L+ PG +D + F D ++ + + S I+A+G G+ S T
Sbjct: 32 DCGGGLVTPGLVDPHTHLVFAGDRVNEFEMKLQGASYLEILAQG---GGILSTVRATRAA 88
Query: 63 SEPQVYKKVLSRLRK 77
SE ++ K L RL+
Sbjct: 89 SEEELLKLALFRLKS 103
>gnl|CDD|236419 PRK09228, PRK09228, guanine deaminase; Provisional.
Length = 433
Score = 41.7 bits (99), Expect = 5e-04
Identities = 19/44 (43%), Positives = 27/44 (61%)
Query: 357 MRSTRCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILD 400
++ R S A +A+L A+ALGL+ G L G +ADFV+LD
Sbjct: 343 LQGYRLSPFQAFYLATLGGARALGLDDRIGNLAPGKEADFVVLD 386
Score = 30.2 bits (69), Expect = 1.9
Identities = 11/16 (68%), Positives = 11/16 (68%)
Query: 7 DCGGKLIAPGFIDIQI 22
D GKLI PGFID I
Sbjct: 62 DYRGKLILPGFIDTHI 77
>gnl|CDD|224149 COG1228, HutI, Imidazolonepropionase and related amidohydrolases
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 406
Score = 41.6 bits (98), Expect = 5e-04
Identities = 17/34 (50%), Positives = 24/34 (70%)
Query: 367 ALEVASLHPAKALGLEQHKGTLDFGADADFVILD 400
AL+ A+++ AKALGL G+L+ G DAD V+ D
Sbjct: 341 ALKAATINAAKALGLADKVGSLEPGKDADLVVWD 374
Score = 34.7 bits (80), Expect = 0.078
Identities = 25/128 (19%), Positives = 37/128 (28%), Gaps = 12/128 (9%)
Query: 7 DCGGKLIAPGFIDIQINGGFGVDFSHDIDSVDKNVSIVARGILAHGVTSFCPTLVT-SEP 65
D GK + PG ID + GFG + + + S G+ T +
Sbjct: 56 DAKGKTVTPGLIDAHTHLGFGGSRGGEFELREAGASYTEILAAGGGILPLDRGFTTARDG 115
Query: 66 QVYKKVLSRLRKTPGGKHGATV--------LGAHVEGPFISPDKKGAHSL-SKIVTFDKG 116
+ L RL+ G G T L EG + S + +
Sbjct: 116 GLKATALPRLK--RAGSAGVTTGERKSGYGLDLETEGGHLRAAAGLKESRPVAVGSTPLA 173
Query: 117 FDSVREVY 124
V E
Sbjct: 174 AHGVPEER 181
>gnl|CDD|223479 COG0402, SsnA, Cytosine deaminase and related metal-dependent
hydrolases [Nucleotide transport and metabolism /
General function prediction only].
Length = 421
Score = 41.7 bits (98), Expect = 6e-04
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 366 HALEVASLHPAKALGLEQHKGTLDFGADADFVILD-EGLHVYSTWIAGDL 414
AL++A+L AKALGL+ G+L+ G AD V+LD H+ L
Sbjct: 340 EALDMATLGGAKALGLDDI-GSLEVGKKADLVVLDASAPHLAPLRPVSRL 388
>gnl|CDD|238640 cd01315, L-HYD_ALN, L-Hydantoinases (L-HYDs) and Allantoinase
(ALN); L-Hydantoinases are a member of the
dihydropyrimidinase family, which catalyzes the
reversible hydrolytic ring opening of dihydropyrimidines
and hydantoins (five-membered cyclic diamides used in
biotechnology). But L-HYDs differ by having an L-enantio
specificity and by lacking activity on possible natural
substrates such as dihydropyrimidines. Allantoinase
catalyzes the hydrolytic cleavage of the five-member
ring of allantoin (5-ureidohydantoin) to form allantoic
acid.
Length = 447
Score = 41.1 bits (97), Expect = 8e-04
Identities = 16/38 (42%), Positives = 20/38 (52%)
Query: 363 SLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILD 400
SL + +PAK GL KG + G DADFV+ D
Sbjct: 354 SLEDIARLMCENPAKLFGLSHQKGRIAVGYDADFVVWD 391
>gnl|CDD|132012 TIGR02967, guan_deamin, guanine deaminase. This model describes
guanine deaminase, which hydrolyzes guanine to xanthine
and ammonia. Xanthine can then be converted to urate by
xanthine dehydrogenase, and urate subsequently degraded.
In some bacteria, the guanine deaminase gene is found
near the xdhABC genes for xanthine dehydrogenase.
Non-homologous forms of guanine deaminase also exist, as
well as distantly related forms outside the scope of
this model [Purines, pyrimidines, nucleosides, and
nucleotides, Other].
Length = 401
Score = 40.7 bits (96), Expect = 0.001
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 357 MRSTRCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILD 400
++ R S A +A+L A+AL L+ G + G +ADFV+LD
Sbjct: 318 LQGARLSPFEAFYLATLGGARALDLDDRIGNFEPGKEADFVVLD 361
>gnl|CDD|238634 cd01309, Met_dep_hydrolase_C, Metallo-dependent hydrolases,
subgroup C is part of the superfamily of
metallo-dependent hydrolases, a large group of proteins
that show conservation in their 3-dimensional fold (TIM
barrel) and in details of their active site. The vast
majority of the members have a conserved metal binding
site, involving four histidines and one aspartic acid
residue. In the common reaction mechanism, the metal ion
(or ions) deprotonate a water molecule for a
nucleophilic attack on the substrate. The function of
this subgroup is unknown.
Length = 359
Score = 40.4 bits (95), Expect = 0.001
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 5/51 (9%)
Query: 367 ALEVASLHPAKALGLEQHKGTLDFGADADFVILD-EGLHVYS----TWIAG 412
AL+ +++PAK LG+E G+L+ G DAD V+ + + L S +I G
Sbjct: 305 ALKAITINPAKILGIEDRVGSLEPGKDADLVVWNGDPLEPTSKPEQVYIDG 355
>gnl|CDD|222250 pfam13594, Amidohydro_5, Amidohydrolase. This family of enzymes
are a part of a large metal dependent hydrolase
superfamily. The family includes Adenine deaminase
EC:3.5.4.2 that hydrolyses adenine to form hypoxanthine
and ammonia. Adenine deaminases reaction is important
for adenine utilisation as a purine and also as a
nitrogen source. This family also includes
dihydroorotase and N-acetylglucosamine-6-phosphate
deacetylases, EC:3.5.1.25 These enzymes catalyze the
reaction N-acetyl-D-glucosamine 6-phosphate + H2O <=>
D-glucosamine 6-phosphate + acetate. This family
includes the catalytic domain of urease alpha subunit.
Dihydroorotases (EC:3.5.2.3) are also included.
Length = 66
Score = 36.5 bits (85), Expect = 0.001
Identities = 14/50 (28%), Positives = 19/50 (38%), Gaps = 8/50 (16%)
Query: 7 DCGGKLIAPGFIDIQINGGFGVDFSHDIDSVDKNVSIVARGILAHGVTSF 56
D GK + PG ID+ ++ G A LA GVT+
Sbjct: 25 DAEGKYVLPGLIDMHVHLGEEPGRETLET--------GAAAALAGGVTTV 66
>gnl|CDD|224490 COG1574, COG1574, Predicted metal-dependent hydrolase with the
TIM-barrel fold [General function prediction only].
Length = 535
Score = 39.6 bits (93), Expect = 0.003
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 367 ALEVASLHPAKALGLEQHKGTLDFGADADFVILDE 401
AL + A A G E KG+L+ G ADF +LD
Sbjct: 472 ALRAYTEGGAYASGAEGEKGSLEPGKLADFAVLDR 506
>gnl|CDD|236240 PRK08323, PRK08323, phenylhydantoinase; Validated.
Length = 459
Score = 39.4 bits (93), Expect = 0.003
Identities = 18/32 (56%), Positives = 21/32 (65%)
Query: 369 EVASLHPAKALGLEQHKGTLDFGADADFVILD 400
E+ S +PAK GL KGT+ GADAD VI D
Sbjct: 363 ELTSTNPAKIFGLYPRKGTIAVGADADIVIWD 394
>gnl|CDD|180895 PRK07228, PRK07228, N-ethylammeline chlorohydrolase; Provisional.
Length = 445
Score = 38.8 bits (91), Expect = 0.004
Identities = 19/42 (45%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 366 HALEVASLHPAKALGLEQHKGTLDFGADADFVILD-EGLHVY 406
E+A+L AKA G E G+L+ G AD ILD +GLH
Sbjct: 341 TVFEMATLGGAKAAGFEDEIGSLEEGKKADLAILDLDGLHAT 382
>gnl|CDD|236366 PRK09045, PRK09045, N-ethylammeline chlorohydrolase; Provisional.
Length = 443
Score = 38.4 bits (90), Expect = 0.005
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 20/70 (28%)
Query: 367 ALEVASLHPAKALGLEQHKGTLDFGADADFVILD-EGLH-----------VYST------ 408
AL +A+L+ A+ALGL+ G+L+ G AD V +D GL VY+
Sbjct: 345 ALRMATLNGARALGLDDEIGSLEPGKQADLVAVDLSGLETQPVYDPVSQLVYAAGREQVS 404
Query: 409 --WIAGDLKL 416
W+AG L
Sbjct: 405 HVWVAGKQLL 414
>gnl|CDD|223933 COG1001, AdeC, Adenine deaminase [Nucleotide transport and
metabolism].
Length = 584
Score = 38.4 bits (90), Expect = 0.007
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 365 VHALEVASLHPAKALGLEQHKGTLDFGADADFVILD--EGLHVYSTWIAG 412
+ A ++A+++PA+ GL+ G + G AD VIL+ V S I G
Sbjct: 306 LDAYQMATINPAEHYGLD-DLGLIAPGRRADLVILEDLRNFKVTSVLIKG 354
Score = 32.7 bits (75), Expect = 0.36
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 10/50 (20%)
Query: 7 DCGGKLIAPGFIDIQINGGFGVDFSHDIDSVDKNVSIVARGILAHGVTSF 56
D G+ I PGFID + H I+S S AR +L HG T+
Sbjct: 69 DAAGRYIVPGFIDAHL---------H-IESSMLTPSEFARAVLPHGTTTV 108
>gnl|CDD|184033 PRK13404, PRK13404, dihydropyrimidinase; Provisional.
Length = 477
Score = 38.1 bits (89), Expect = 0.007
Identities = 18/42 (42%), Positives = 22/42 (52%)
Query: 361 RCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILDEG 402
R SL + + S +PAK GL KG + GADAD I D
Sbjct: 364 RISLNRFVALTSTNPAKLYGLYPRKGAIAIGADADIAIWDPD 405
>gnl|CDD|236262 PRK08417, PRK08417, dihydroorotase; Provisional.
Length = 386
Score = 38.1 bits (89), Expect = 0.007
Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 352 CVQFFMRSTRCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILDE 401
C + ++ + S +PA+ LGL G ++ G +AD V+ D
Sbjct: 305 CYTYLVKEGIITWSELSRFTSYNPAQFLGLN--SGEIEVGKEADLVLFDP 352
>gnl|CDD|238632 cd01307, Met_dep_hydrolase_B, Metallo-dependent hydrolases,
subgroup B is part of the superfamily of
metallo-dependent hydrolases, a large group of proteins
that show conservation in their 3-dimensional fold (TIM
barrel) and in details of their active site. The vast
majority of the members have a conserved metal binding
site, involving four histidines and one aspartic acid
residue. In the common reaction mechanism, the metal ion
(or ions) deprotonate a water molecule for a
nucleophilic attack on the substrate. The function of
this subgroup is unknown.
Length = 338
Score = 37.7 bits (88), Expect = 0.008
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 363 SLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILDE 401
L +E + +PA+ LGL GTL G DAD + D
Sbjct: 278 PLEEVIEAVTANPARMLGLA-EIGTLAVGYDADLTVFDL 315
>gnl|CDD|238627 cd01302, Cyclic_amidohydrolases, Cyclic amidohydrolases, including
hydantoinase, dihydropyrimidinase, allantoinase, and
dihydroorotase, are involved in the metabolism of
pyrimidines and purines, sharing the property of
hydrolyzing the cyclic amide bond of each substrate to
the corresponding N-carbamyl amino acids. Allantoinases
catalyze the degradation of purines, while
dihydropyrimidinases and hydantoinases, a microbial
counterpart of dihydropyrimidinase, are involved in
pyrimidine degradation. Dihydroorotase participates in
the de novo synthesis of pyrimidines.
Length = 337
Score = 37.4 bits (87), Expect = 0.011
Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 363 SLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILD 400
SL +E+ S +PA+ GL KGT+ G DAD VI+D
Sbjct: 268 SLETLVEILSENPARIFGLYP-KGTIAVGYDADLVIVD 304
>gnl|CDD|223122 COG0044, PyrC, Dihydroorotase and related cyclic amidohydrolases
[Nucleotide transport and metabolism].
Length = 430
Score = 37.3 bits (87), Expect = 0.014
Identities = 18/41 (43%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 361 RCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILDE 401
R SL +E+ S +PA+ GL KG ++ GADAD V++D
Sbjct: 341 RLSLERLVELLSTNPARIFGL-PPKGAIEEGADADLVLVDP 380
Score = 29.2 bits (66), Expect = 4.7
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 6 FDCGGKLIAPGFIDIQ 21
D G L+ PG +D+
Sbjct: 44 IDAKGLLVLPGLVDLH 59
>gnl|CDD|236423 PRK09237, PRK09237, dihydroorotase; Provisional.
Length = 380
Score = 37.1 bits (87), Expect = 0.014
Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 363 SLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILD 400
L + + + A AL L + G L G+DAD +
Sbjct: 297 PLEEVIAAVTKNAADALRLPE-LGRLQVGSDADLTLFT 333
>gnl|CDD|238639 cd01314, D-HYD, D-hydantoinases (D-HYD) also called
dihydropyrimidases (DHPase) and related proteins;
DHPases are a family of enzymes that catalyze the
reversible hydrolytic ring opening of the amide bond in
five- or six-membered cyclic diamides, like
dihydropyrimidine or hydantoin. The hydrolysis of
dihydropyrimidines is the second step of reductive
catabolism of pyrimidines in human. The hydrolysis of
5-substituted hydantoins in microorganisms leads to
enantiomerically pure N-carbamyl amino acids, which are
used for the production of antibiotics, peptide
hormones, pyrethroids, and pesticides. HYDs are
classified depending on their stereoselectivity. This
family also includes collapsin response regulators
(CRMPs), cytosolic proteins involved in neuronal
differentiation and axonal guidance which have strong
homology to DHPases, but lack most of the active site
residues.
Length = 447
Score = 36.8 bits (86), Expect = 0.017
Identities = 17/32 (53%), Positives = 21/32 (65%)
Query: 369 EVASLHPAKALGLEQHKGTLDFGADADFVILD 400
E+ S +PAK GL KGT+ G+DAD VI D
Sbjct: 363 ELTSTNPAKIFGLYPRKGTIAVGSDADLVIWD 394
>gnl|CDD|181288 PRK08204, PRK08204, hypothetical protein; Provisional.
Length = 449
Score = 36.1 bits (84), Expect = 0.027
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 367 ALEVASLHPAKALGLEQHKGTLDFGADADFVILD 400
LE A++ A+ALGLE G+L G AD V++D
Sbjct: 347 VLEWATIEGARALGLEDRIGSLTPGKQADLVLID 380
>gnl|CDD|238620 cd01295, AdeC, Adenine deaminase (AdeC) directly deaminates adenine
to form hypoxanthine. This reaction is part of one of
the adenine salvage pathways, as well as the degradation
pathway. It is important for adenine utilization as a
purine, as well as a nitrogen source in bacteria and
archea.
Length = 422
Score = 36.0 bits (84), Expect = 0.029
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 367 ALEVASLHPAKALGLEQHKGTLDFGADADFVILD--EGLHVYSTWIAG 412
A+++A+++PA+ GL G + G AD VILD E ++ + G
Sbjct: 240 AIQMATINPAECYGLHDL-GAIAPGRIADIVILDDLENFNITTVLAKG 286
Score = 33.4 bits (77), Expect = 0.23
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 10/50 (20%)
Query: 7 DCGGKLIAPGFIDIQINGGFGVDFSHDIDSVDKNVSIVARGILAHGVTSF 56
D GK I PGFID + H I+S S A+ +L HG T+
Sbjct: 1 DAEGKYIVPGFIDAHL---------H-IESSMLTPSEFAKAVLPHGTTTV 40
>gnl|CDD|238633 cd01308, Isoaspartyl-dipeptidase, Isoaspartyl dipeptidase
hydrolyzes the beta-L-isoaspartyl linkages in
dipeptides, as part of the degradative pathway to
eliminate proteins with beta-L-isoaspartyl peptide
bonds, bonds whereby the beta-group of an aspartate
forms the peptide link with the amino group of the
following amino acid. Formation of this bond is a
spontaneous nonenzymatic reaction in nature and can
profoundly effect the function of the protein.
Isoaspartyl dipeptidase is an octameric enzyme that
contains a binuclear zinc center in the active site of
each subunit and shows a strong preference of
hydrolyzing Asp-Leu dipeptides.
Length = 387
Score = 36.2 bits (84), Expect = 0.029
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 363 SLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILDEGLHVYSTWIAGDL 414
L AL V + + A+ L L + KG + G DAD VILD+ L + S G +
Sbjct: 323 PLEVALRVITSNVARILKL-RKKGEIQPGFDADLVILDKDLDINSVIAKGQI 373
>gnl|CDD|237604 PRK14085, PRK14085, imidazolonepropionase; Provisional.
Length = 382
Score = 36.1 bits (84), Expect = 0.030
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
Query: 339 NCNNGGSIT---PFNGCVQFFMRSTRCSLVHALEVASLHPAKALGLEQHKGTLDFGADAD 395
+CN G S T PF CV +R + A+ A+ A+AL + G L GA AD
Sbjct: 300 DCNPGSSYTSSMPF--CVALAVRQMGMTPAEAVWAATAGGARALRRDD-VGVLAVGARAD 356
Query: 396 FVILDEGLHVY 406
+LD H++
Sbjct: 357 LHVLDAPSHLH 367
>gnl|CDD|238642 cd01317, DHOase_IIa, Dihydroorotase (DHOase), subgroup IIa; DHOases
catalyze the reversible interconversion of carbamoyl
aspartate to dihydroorotate, a key reaction in
pyrimidine biosynthesis. This subgroup also contains
proteins that lack the active site, like unc-33, a
C.elegans protein involved in axon growth.
Length = 374
Score = 35.7 bits (83), Expect = 0.036
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 352 CVQFFMRSTRCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILD 400
++ +L + S +PAK LGL G L+ GA AD V+ D
Sbjct: 295 LWTLLVKGGLLTLPDLIRALSTNPAKILGLPP--GRLEVGAPADLVLFD 341
>gnl|CDD|237967 PRK15446, PRK15446, phosphonate metabolism protein PhnM;
Provisional.
Length = 383
Score = 35.5 bits (83), Expect = 0.040
Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 4/56 (7%)
Query: 362 CSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILDEGL---HVYSTWIAGDL 414
L A+ + + +PA+A GL +G + G AD V + V + W G
Sbjct: 324 LDLPQAVALVTANPARAAGL-DDRGEIAPGKRADLVRVRRAGGLPVVRAVWRGGRR 378
>gnl|CDD|238628 cd01303, GDEase, Guanine deaminase (GDEase). Guanine deaminase is
an aminohydrolase responsible for the conversion of
guanine to xanthine and ammonia, the first step to
utilize guanine as a nitrogen source. This reaction also
removes the guanine base from the pool and therefore can
play a role in the regulation of cellular GTP and the
guanylate nucleotide pool.
Length = 429
Score = 35.3 bits (82), Expect = 0.047
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 359 STRCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILD 400
+ S A +A+L A+ALGL+ G + G + D V++D
Sbjct: 348 HAKLSPAEAFYLATLGGAEALGLDDKIGNFEVGKEFDAVVID 389
>gnl|CDD|180657 PRK06687, PRK06687, chlorohydrolase; Validated.
Length = 419
Score = 35.4 bits (81), Expect = 0.052
Identities = 18/55 (32%), Positives = 33/55 (60%), Gaps = 5/55 (9%)
Query: 357 MRS---TRCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILDEG--LHVY 406
M+S ++ + AL+V ++ AKALG+E G+L+ G ADF+++ +H+
Sbjct: 326 MKSGDASQFPIETALKVLTIEGAKALGMENQIGSLEVGKQADFLVIQPQGKIHLQ 380
>gnl|CDD|221936 pfam13147, Amidohydro_4, Amidohydrolase. This family of enzymes
are a part of a large metal dependent hydrolase
superfamily. The family includes Adenine deaminase
EC:3.5.4.2 that hydrolyses adenine to form hypoxanthine
and ammonia. Adenine deaminases reaction is important
for adenine utilisation as a purine and also as a
nitrogen source. This family also includes
dihydroorotase and N-acetylglucosamine-6-phosphate
deacetylases, EC:3.5.1.25 These enzymes catalyze the
reaction N-acetyl-D-glucosamine 6-phosphate + H2O <=>
D-glucosamine 6-phosphate + acetate. This family
includes the catalytic domain of urease alpha subunit.
Dihydroorotases (EC:3.5.2.3) are also included.
Length = 304
Score = 34.8 bits (79), Expect = 0.058
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 363 SLVHALEVASLHPAKALGLEQHKGTLDFGADADFV 397
+ AL +A+L+PA+ LGL G L+ G AD V
Sbjct: 270 TPEEALRLATLNPARLLGLGDDLGRLEVGKRADLV 304
Score = 31.8 bits (71), Expect = 0.57
Identities = 30/180 (16%), Positives = 61/180 (33%), Gaps = 2/180 (1%)
Query: 7 DCGGKLIAPGFIDIQINGGFGVDFSHDIDSVDKNVSIVARGILAHGVTSFCPTLVTSEPQ 66
D G+L+ PG +D+ ++G D S D + GVTS
Sbjct: 1 DAKGRLVLPGLVDLHVHGRPL-DKSEDGGPYRAEAEAGLAALAGAGVTSALLDGGWEPEL 59
Query: 67 VYKKVLSRLRKTPGGKHGATVLGAHVEGPFISPDKKGAHSLSKIVTFDKGFDSVREVYGN 126
+ + ++ L G ++ + +G V G +++
Sbjct: 60 LTRLLVRVLVDGLIGLGNLGATLEALKRLVELLEAEGVALPLASVLDGPGLEALLR-EAK 118
Query: 127 LSNIAIITLAPELAGSMEVIDKLVEQGITVSLGHSSADINIAEEAVRHGASLITHLFNAM 186
+ + ++ ++K ++ ++LGH A+ E + GA L H+ A
Sbjct: 119 KAGLILLVGHAPADLGDGAVEKGLDALFLLALGHEVAEDLHLAEILDPGAGLGLHVIAAA 178
>gnl|CDD|233694 TIGR02033, D-hydantoinase, D-hydantoinase. This model represents
the D-hydantoinase (dihydropyrimidinase) which primarily
converts 5,6-dihydrouracil to 3-ureidopropanoate but
also acts on dihydrothymine and hydantoin. The enzyme is
a metalloenzyme.
Length = 454
Score = 35.1 bits (81), Expect = 0.075
Identities = 17/40 (42%), Positives = 24/40 (60%)
Query: 361 RCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILD 400
R +L +E+ S +PAK + KGT+ G+DAD VI D
Sbjct: 357 RITLEKFVELTSTNPAKIFNMYPQKGTIAVGSDADIVIWD 396
>gnl|CDD|238625 cd01300, YtcJ_like, YtcJ_like metal dependent amidohydrolases. YtcJ
is a Bacillus subtilis ORF of unknown function. The
Arabidopsis homolog LAF3 has been identified as a factor
required for photochrome A signalling.
Length = 479
Score = 34.6 bits (80), Expect = 0.091
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 367 ALEVASLHPAKALGLEQHKGTLDFGADADFVI 398
AL ++ A A+G E KG+L+ G ADFV+
Sbjct: 448 ALRAYTIGAAYAIGEEDEKGSLEPGKLADFVV 479
>gnl|CDD|179417 PRK02382, PRK02382, dihydroorotase; Provisional.
Length = 443
Score = 34.6 bits (80), Expect = 0.095
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 10/61 (16%)
Query: 358 RSTRCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILD---------EGLHVYST 408
R R L +V + +PA+ GL+ KG + G DAD V++D + LH +
Sbjct: 337 RKNRLPLERVRDVTAANPARIFGLDG-KGRIAEGYDADLVLVDPDAAREIRGDDLHSKAG 395
Query: 409 W 409
W
Sbjct: 396 W 396
>gnl|CDD|238624 cd01299, Met_dep_hydrolase_A, Metallo-dependent hydrolases,
subgroup A is part of the superfamily of
metallo-dependent hydrolases, a large group of proteins
that show conservation in their 3-dimensional fold (TIM
barrel) and in details of their active site. The vast
majority of the members have a conserved metal binding
site, involving four histidines and one aspartic acid
residue. In the common reaction mechanism, the metal ion
(or ions) deprotonate a water molecule for a
nucleophilic attack on the substrate. The function of
this subgroup is unknown.
Length = 342
Score = 34.2 bits (79), Expect = 0.12
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 367 ALEVASLHPAKALGLEQHKGTLDFGADADFVILDE 401
AL A+ + A+ LGL G ++ G AD +++D
Sbjct: 299 ALRAATANAAELLGLSDELGVIEAGKLADLLVVDG 333
>gnl|CDD|224150 COG1229, FwdA, Formylmethanofuran dehydrogenase subunit A [Energy
production and conversion].
Length = 575
Score = 34.4 bits (79), Expect = 0.12
Identities = 16/26 (61%), Positives = 17/26 (65%)
Query: 375 PAKALGLEQHKGTLDFGADADFVILD 400
PAK LGL + KG L GADAD I D
Sbjct: 451 PAKVLGLSERKGHLGVGADADIAIYD 476
>gnl|CDD|225985 COG3454, COG3454, Metal-dependent hydrolase involved in phosphonate
metabolism [Inorganic ion transport and metabolism].
Length = 377
Score = 33.9 bits (78), Expect = 0.15
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 363 SLVHALEVASLHPAKALGLEQHKGTLDFGADADFVI--LDEGL-HVYSTWIAGD 413
SL A+ + + +PA+ALGL +G + G AD V D G+ + + W AG
Sbjct: 322 SLPQAVALVTKNPARALGLTD-RGRIAPGLRADLVRVRRDGGVPVIRTVWRAGK 374
>gnl|CDD|238631 cd01306, PhnM, PhnM is believed to be a subunit of the membrane
associated C-P lyase complex. C-P lyase is thought to
catalyze the direct cleavage of inactivated C-P bonds to
yield inorganic phosphate and the corresponding
hydrocarbons. It is responsible for cleavage of
alkylphosphonates, which are utilized as sole phosphorus
sources by many bacteria.
Length = 325
Score = 33.4 bits (77), Expect = 0.17
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 362 CSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILDEGL---HVYSTWIAG 412
SL A+ + S +PA+A+GL +G++ G AD +++D+ V + W G
Sbjct: 273 WSLPEAVALVSANPARAVGL-TDRGSIAPGKRADLILVDDMDGVPVVRTVWRGG 325
>gnl|CDD|163175 TIGR03178, allantoinase, allantoinase. This enzyme carries out the
first step in the degradation of allantoin, a
ring-opening hydrolysis. The seed members of this model
are all in the vicinity of other genes involved in the
processes of xanthine/urate/allantoin catabolism.
Although not included in the seed, many eukaryotic
homologs of this family are included above the trusted
cutoff. Below the noise cutoff are related
hydantoinases.
Length = 443
Score = 33.5 bits (77), Expect = 0.18
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 372 SLHPAKALGLEQHKGTLDFGADADFVILDEG 402
+ +PAK GL Q KG + G DADFV +D
Sbjct: 360 ATNPAKRFGLAQ-KGRIAPGKDADFVFVDPD 389
>gnl|CDD|180337 PRK05985, PRK05985, cytosine deaminase; Provisional.
Length = 391
Score = 33.4 bits (77), Expect = 0.23
Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 364 LVHALEVASLHPAKALGLEQHKGTLDFGADADFVILD 400
L AL+ + A+ALGLE + L GA ADFV++D
Sbjct: 329 LAAALDCVTHGGARALGLEDYG--LAVGARADFVLVD 363
>gnl|CDD|178392 PLN02795, PLN02795, allantoinase.
Length = 505
Score = 32.8 bits (75), Expect = 0.36
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 363 SLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILD 400
+L S PAK GL+ KG + G DAD V+ D
Sbjct: 409 TLEQLARWWSERPAKLAGLDS-KGAIAPGKDADIVVWD 445
>gnl|CDD|130246 TIGR01178, ade, adenine deaminase. The family described by this
model includes an experimentally characterized adenine
deaminase of Bacillus subtilis. It also include a member
from Methanobacterium thermoautotrophicum, in which
adenine deaminase activity has been detected [Purines,
pyrimidines, nucleosides, and nucleotides, Salvage of
nucleosides and nucleotides].
Length = 552
Score = 32.4 bits (74), Expect = 0.41
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 363 SLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILD--EGLHVYSTWIAGDL 414
AL++AS++PA+ G++ G + G ADFVIL V T++ G L
Sbjct: 277 DPFDALQMASINPAEHFGID-VGGLIAPGDPADFVILKDLRNFKVNKTYVKGKL 329
>gnl|CDD|226473 COG3964, COG3964, Predicted amidohydrolase [General function
prediction only].
Length = 386
Score = 32.5 bits (74), Expect = 0.41
Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 363 SLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILD 400
L + + +PA +GL + GTL GA AD +
Sbjct: 301 PLTDVINAVTHNPAVLIGLAE-IGTLAPGAFADITVFK 337
>gnl|CDD|234114 TIGR03121, one_C_dehyd_A, formylmethanofuran dehydrogenase subunit
A. Members of this largely archaeal protein family are
subunit A of the formylmethanofuran dehydrogenase.
Nomenclature in some bacteria may reflect inclusion of
the formyltransferase described by TIGR03119 as part of
the complex, and therefore call this protein
formyltransferase/hydrolase complex Fhc subunit A. Note
that this model does not distinguish tungsten (FwdA)
from molybdenum-containing (FmdA) forms of this enzyme;
a single gene from this family is expressed
constitutively in Methanobacterium thermoautotrophicum,
which has both tungsten and molybdenum forms and may
work interchangeably.
Length = 556
Score = 32.3 bits (74), Expect = 0.48
Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 375 PAKALGLEQHKGTLDFGADADFVILD 400
PAK LGL +G L GADAD + D
Sbjct: 443 PAKLLGL-TDRGHLGVGADADIAVYD 467
>gnl|CDD|181419 PRK08418, PRK08418, chlorohydrolase; Provisional.
Length = 408
Score = 32.2 bits (74), Expect = 0.54
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 371 ASLHPAKALGLEQHKGTLDFGADADFVILDEGLHV 405
A+ + AKALGL G + G DAD + +
Sbjct: 348 ATRYGAKALGLN--NGEIKEGKDADLSVFELPEEC 380
>gnl|CDD|131030 TIGR01975, isoAsp_dipep, isoaspartyl dipeptidase IadA. The
L-isoaspartyl derivative of Asp arises non-enzymatically
over time as a form of protein damage. In this
isomerization, the connectivity of the polypeptide
changes to pass through the beta-carboxyl of the side
chain. Much but not all of this damage can be repaired
by protein-L-isoaspartate (D-aspartate)
O-methyltransferase. This model describes the
isoaspartyl dipeptidase IadA, apparently one of two such
enzymes in E. coli, an enzyme that degrades isoaspartyl
dipeptides and may unblock degradation of proteins that
cannot be repaired. This model also describes closely
related proteins from other species (e.g. Clostridium
perfringens, Thermoanaerobacter tengcongensis) that we
assume to be equivalent in function. This family shows
homology to dihydroorotases [Protein fate, Degradation
of proteins, peptides, and glycopeptides].
Length = 389
Score = 32.1 bits (73), Expect = 0.55
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 363 SLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILDEGLHVYSTWIAGDL 414
L AL V + + A L L KG + G DAD V+LD L ++S G L
Sbjct: 325 PLEKALRVITSNVAGVLNL-TGKGEISPGNDADLVVLDPDLRIHSVIARGKL 375
>gnl|CDD|131371 TIGR02318, phosphono_phnM, phosphonate metabolism protein PhnM.
This family consists of proteins from in the PhnM
family. PhnM is a a protein associated with phosphonate
utilization in a number of bacterial species. In
Pseudomonas stutzeri WM88, a protein that is part of a
system for the oxidation of phosphites (another form of
reduced phosphorous compound) scores between trusted and
noise cutoffs [Energy metabolism, Other].
Length = 376
Score = 31.9 bits (73), Expect = 0.58
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 363 SLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILDEGL---HVYSTWIAGDL 414
L A+++ + +PA+A+GL +G++ G AD V + + + W AG
Sbjct: 321 PLPQAVKMVTKNPARAVGL-SDRGSIAPGKRADLVRVHRVDGVPRIRAVWRAGRR 374
>gnl|CDD|176075 cd08693, C2_PI3K_class_I_beta_delta, C2 domain present in class I
beta and delta phosphatidylinositol 3-kinases (PI3Ks).
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases)
regulate cell processes such as cell growth,
differentiation, proliferation, and motility. PI3Ks
work on phosphorylation of phosphatidylinositol,
phosphatidylinositide (4)P (PtdIns (4)P),2 or
PtdIns(4,5)P2. Specifically they phosphorylate the D3
hydroxyl group of phosphoinositol lipids on the
inositol ring. There are 3 classes of PI3Ks based on
structure, regulation, and specificity. All classes
contain a C2 domain, a PIK domain, and a kinase
catalytic domain. The members here are class I, beta
and delta isoforms of PI3Ks and contain both a
Ras-binding domain and a p85-binding domain. Class II
PI3Ks contain both of these as well as a PX domain, and
a C-terminal C2 domain containing a nuclear
localization signal. C2 domains fold into an 8-standed
beta-sandwich that can adopt 2 structural arrangements:
Type I and Type II, distinguished by a circular
permutation involving their N- and C-terminal beta
strands. Many C2 domains are Ca2+-dependent
membrane-targeting modules that bind a wide variety of
substances including bind phospholipids, inositol
polyphosphates, and intracellular proteins. Most C2
domain proteins are either signal transduction enzymes
that contain a single C2 domain, such as protein kinase
C, or membrane trafficking proteins which contain at
least two C2 domains, such as synaptotagmin 1.
However, there are a few exceptions to this including
RIM isoforms and some splice variants of
piccolo/aczonin and intersectin which only have a
single C2 domain. C2 domains with a calcium binding
region have negatively charged residues, primarily
aspartates, that serve as ligands for calcium ions.
Members have a type-I topology.
Length = 173
Score = 31.1 bits (71), Expect = 0.66
Identities = 9/35 (25%), Positives = 19/35 (54%)
Query: 33 DIDSVDKNVSIVARGILAHGVTSFCPTLVTSEPQV 67
++++ ++ + + + L HG S C T+ TSE
Sbjct: 19 NLNAAERTMKVGVQAGLFHGGESLCKTVKTSEVSG 53
>gnl|CDD|238637 cd01312, Met_dep_hydrolase_D, Metallo-dependent hydrolases,
subgroup D is part of the superfamily of
metallo-dependent hydrolases, a large group of proteins
that show conservation in their 3-dimensional fold (TIM
barrel) and in details of their active site. The vast
majority of the members have a conserved metal binding
site, involving four histidines and one aspartic acid
residue. In the common reaction mechanism, the metal ion
(or ions) deprotonate a water molecule for a
nucleophilic attack on the substrate. The function of
this subgroup is unknown.
Length = 381
Score = 31.7 bits (72), Expect = 0.70
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 367 ALEVASLHPAKALGLEQHKGTLDFGADADFVILD 400
L +A+L A+ALGL + G ++ G ADF + +
Sbjct: 321 LLLMATLGGARALGL--NNGEIEAGKRADFAVFE 352
>gnl|CDD|238623 cd01298, ATZ_TRZ_like, TRZ/ATZ family contains enzymes from the
atrazine degradation pathway and related hydrolases.
Atrazine, a chlorinated herbizide, can be catabolized by
a variety of different bacteria. The first three steps
of the atrazine dehalogenation pathway are catalyzed by
atrazine chlorohydrolase (AtzA), hydroxyatrazine
ethylaminohydrolase (AtzB), and N-isopropylammelide
N-isopropylaminohydrolase (AtzC). All three enzymes
belong to the superfamily of metal dependent hydrolases.
AtzA and AtzB, beside other related enzymes are
represented in this CD.
Length = 411
Score = 31.8 bits (73), Expect = 0.73
Identities = 16/35 (45%), Positives = 26/35 (74%), Gaps = 1/35 (2%)
Query: 366 HALEVASLHPAKALGLEQHKGTLDFGADADFVILD 400
ALE+A++ AKALGL++ G+L+ G AD +++D
Sbjct: 336 EALEMATIGGAKALGLDE-IGSLEVGKKADLILID 369
>gnl|CDD|225762 COG3221, PhnD, ABC-type phosphate/phosphonate transport system,
periplasmic component [Inorganic ion transport and
metabolism].
Length = 299
Score = 31.2 bits (71), Expect = 0.99
Identities = 29/133 (21%), Positives = 39/133 (29%), Gaps = 19/133 (14%)
Query: 85 ATVLGAHVEGPFISPDKKGAHSLSKIVTFDKGFDSVREVYGNLSNIAIITLAPELAGSME 144
A + A G S G N +N+ I LA +E
Sbjct: 13 AVLALAGCCGSSESDAPAAE----DPKELRVGIVP----TENPTNL--IPAWAPLADYLE 62
Query: 145 VIDKLVEQGITVSLGHSSADINIAEEAVRHGASLITHL--FNAMLPFHHRDPGIIGLLSS 202
+L GI V + D EA+R G I L + R L +
Sbjct: 63 --KEL---GIPVEF-FVATDYAAVIEALRAGQVDIAWLGPSAYVE-AVDRALAGEPLAQT 115
Query: 203 DNIDSSKVYYGII 215
D S YY +I
Sbjct: 116 VQKDGSPGYYSVI 128
>gnl|CDD|223080 COG0001, HemL, Glutamate-1-semialdehyde aminotransferase [Coenzyme
metabolism].
Length = 432
Score = 31.4 bits (72), Expect = 1.0
Identities = 28/129 (21%), Positives = 46/129 (35%), Gaps = 13/129 (10%)
Query: 131 AIITLAPELAGSMEVIDKLVEQGITVSLGHSSADINIAEEAVRHGASLITHLFNAMLPFH 190
+ TL EL V ++L G ++ G + A RHG L + +M
Sbjct: 311 GLATLE-ELMTEEGVYERLDALGERLAEG-------LRAAAERHGIPLTVNRVGSMFGIF 362
Query: 191 HRDPGIIGL---LSSDNIDSSKVYYGIIADGVHTHPSALRIANSTHPEGHSSADIHIAEE 247
+ G+ SD +K ++ ++ GV+ PS A H+ DI E
Sbjct: 363 FTEEGVRNYADAKRSDVERFAKFFHHLLNRGVYLAPSQFE-AGFLST-AHTEEDIDRTLE 420
Query: 248 AVRHGASLI 256
A +
Sbjct: 421 AADEAFKEL 429
>gnl|CDD|238622 cd01297, D-aminoacylase, D-aminoacylases (N-acyl-D-Amino acid
amidohydrolases) catalyze the hydrolysis of
N-acyl-D-amino acids to produce the corresponding
D-amino acids, which are used as intermediates in the
synthesis of pesticides, bioactive peptides, and
antibiotics.
Length = 415
Score = 31.1 bits (71), Expect = 1.1
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 363 SLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILD 400
SL A+ + PA+ GL +G + G AD V+ D
Sbjct: 336 SLEEAVRKMTGLPARVFGLAD-RGRIAPGYRADIVVFD 372
Score = 29.2 bits (66), Expect = 4.7
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 2 ADFRFDCGGKLIAPGFIDI 20
A D G ++APGFID+
Sbjct: 40 AREVIDAAGLVVAPGFIDV 58
>gnl|CDD|238618 cd01293, Bact_CD, Bacterial cytosine deaminase and related
metal-dependent hydrolases. Cytosine deaminases (CDs)
catalyze the deamination of cytosine, producing uracil
and ammonia. They play an important role in pyrimidine
salvage. CDs are present in prokaryotes and fungi, but
not mammalian cells. The bacterial enzymes, but not the
fungal enzymes, are related to the adenosine deaminases
(ADA). The bacterial enzymes are iron dependent and
hexameric.
Length = 398
Score = 31.1 bits (71), Expect = 1.3
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 364 LVHALEVASLHPAKALGLEQHKGTLDFGADADFVILD 400
L AL++ + + A+ALGLE + G AD V+LD
Sbjct: 340 LALALDLITGNAARALGLED--YGIKVGCPADLVLLD 374
>gnl|CDD|181631 PRK09059, PRK09059, dihydroorotase; Validated.
Length = 429
Score = 30.0 bits (68), Expect = 2.5
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 363 SLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILD 400
L+ +E S PA+ GL GTL GA AD +++D
Sbjct: 351 PLLRLIEALSTRPAEIFGLP--AGTLKPGAPADIIVID 386
>gnl|CDD|133405 cd04778, HTH_MerR-like_sg2, Helix-Turn-Helix DNA binding domain of
putative transcription regulators from the MerR
superfamily. Putative helix-turn-helix (HTH) MerR-like
transcription regulators (subgroup 2). Based on sequence
similarity, these proteins are predicted to function as
transcription regulators that mediate responses to
stress in eubacteria. They belong to the MerR
superfamily of transcription regulators that promote
transcription of various stress regulons by
reconfiguring the operator sequence located between the
-35 and -10 promoter elements. A typical MerR regulator
is comprised of two distinct domains that harbor the
regulatory (effector-binding) site and the active
(DNA-binding) site. Their N-terminal domains are
homologous and contain a DNA-binding winged HTH motif,
while the C-terminal domains are often dissimilar and
bind specific coactivator molecules such as metal ions,
drugs, and organic substrates.
Length = 219
Score = 29.3 bits (66), Expect = 2.8
Identities = 26/124 (20%), Positives = 41/124 (33%), Gaps = 17/124 (13%)
Query: 159 GHSSADINIAE--EAVRHGASL--ITHLFNAML-PFHHRDPGIIGLLSSDNIDSSK---- 209
G++ A +IAE A G L + L A+ P+ +PG L + +
Sbjct: 57 GYTLA--HIAELLAAWEQGRDLGDVLGLQAAIDGPWSTEEPGTALLAELQSEFGDERALA 114
Query: 210 --VYYGII-ADG---VHTHPSALRIANSTHPEGHSSADIHIAEEAVRHGASLITHLFNAM 263
V G++ DG + P L G + AVR A + F
Sbjct: 115 RAVALGLLEPDGDRVLVPSPRLLEALAELVDAGIPLRAVLDLVAAVRRHADDVAERFVDA 174
Query: 264 LPFH 267
+
Sbjct: 175 VGER 178
>gnl|CDD|236369 PRK09061, PRK09061, D-glutamate deacylase; Validated.
Length = 509
Score = 30.0 bits (68), Expect = 2.9
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 363 SLVHALEVASLHPAKALGLE----QHKGTLDFGADADFVILD 400
SL+ A+ +L PA+ L + KG L GADAD V+ D
Sbjct: 417 SLLEAIRKCTLMPAQILEDSVPAMRRKGRLQAGADADIVVFD 458
>gnl|CDD|238643 cd01318, DHOase_IIb, Dihydroorotase (DHOase), subgroup IIb; DHOases
catalyze the reversible interconversion of carbamoyl
aspartate to dihydroorotate, a key reaction in
pyrimidine biosynthesis. This group contains the archeal
members of the DHOase family.
Length = 361
Score = 29.2 bits (66), Expect = 3.7
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 361 RCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILD 400
SL + + S +PA+ G++ KG + G DAD ++D
Sbjct: 286 ILSLSRVVRLTSHNPARIFGIKN-KGRIAEGYDADLTVVD 324
>gnl|CDD|236479 PRK09357, pyrC, dihydroorotase; Validated.
Length = 423
Score = 29.4 bits (67), Expect = 4.0
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 353 VQFFMRSTRCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILD 400
+++ L LE +++PA+ LGL G L G AD VI D
Sbjct: 335 YTTLVKTGLLDLEQLLEKMTINPARILGLPA--GPLAEGEPADLVIFD 380
>gnl|CDD|233002 TIGR00510, lipA, lipoate synthase. This enzyme is an iron-sulfur
protein. It is localized to mitochondria in yeast and
Arabidopsis. It generates lipoic acid, a thiol
antioxidant that is linked to a specific Lys as
prosthetic group for the pyruvate and
alpha-ketoglutarate dehydrogenase complexes and the
glycine-cleavage system. The family shows strong
sequence conservation [Biosynthesis of cofactors,
prosthetic groups, and carriers, Lipoate].
Length = 302
Score = 29.0 bits (65), Expect = 4.1
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 118 DSVREVYGNLSNIAIITLAPELAGSMEVIDKLVEQGITVSLGHSSADINIAEEAVRHGAS 177
+ + + L NI I TL P+ G++ +D L++ V H+ + VR GA+
Sbjct: 131 ECIEAIREKLPNIKIETLVPDFRGNIAALDILLDAPPDV-YNHNLETVERLTPFVRPGAT 189
>gnl|CDD|211345 cd02868, PseudoU_synth_hTruB2_like, Pseudouridine synthase,
humanTRUB2_like. This group consists of eukaryotic
pseudouridine synthases similar to human TruB
pseudouridine synthase homolog 2 (TRUB2). Pseudouridine
synthases catalyze the isomerization of specific
uridines in an RNA molecule to pseudouridines
(5-ribosyluracil, psi).
Length = 226
Score = 28.9 bits (65), Expect = 4.7
Identities = 12/57 (21%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 172 VRHGASLITHLFNAMLPFHHRDPGIIGLLSSDNIDSSKVYYGIIADGVHTHPSALRI 228
V HG L++HL++ + G++G + + + +V I + H + +I
Sbjct: 52 VNHGNKLLSHLYSNHPTRVYTIRGLLGKATENFFHTGRV----IEKTTYDHITREKI 104
Score = 28.9 bits (65), Expect = 4.7
Identities = 12/57 (21%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 249 VRHGASLITHLFNAMLPFHHRDPGIIGLLSSDNIDSSKVYYGIIADGVHTHPSALRI 305
V HG L++HL++ + G++G + + + +V I + H + +I
Sbjct: 52 VNHGNKLLSHLYSNHPTRVYTIRGLLGKATENFFHTGRV----IEKTTYDHITREKI 104
>gnl|CDD|225221 COG2344, COG2344, AT-rich DNA-binding protein [General function
prediction only].
Length = 211
Score = 28.4 bits (64), Expect = 6.0
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
Query: 130 IAIITLAPELAGSMEVIDKLVEQGITVSLGHSSADINIAEEAVRH----GASLITHLF 183
IAI+T+ E A EV D+LV+ G+ L + + + E + A L T L+
Sbjct: 149 IAILTVPAEHA--QEVADRLVKAGVKGILNFTPVRLQVPEGVIVENIDLTAELQTLLY 204
>gnl|CDD|147328 pfam05095, DUF687, Protein of unknown function (DUF687). This
family contains several uncharacterized Chlamydia
proteins.
Length = 542
Score = 28.9 bits (65), Expect = 6.3
Identities = 12/74 (16%), Positives = 21/74 (28%), Gaps = 3/74 (4%)
Query: 150 VEQGITVSLGHSSADINIAEEAVRHGASLITHLFNAMLPFHHRDPGIIGLLSSDNIDSSK 209
Q + V+ +E + G + N P RD + + + I +
Sbjct: 239 RLQALVVNSSSDPVAFTRLQELLNEGDTSSEAEANPF-PSRCRDILLSSIYAIHRISTLL 297
Query: 210 VYYGIIADGVHTHP 223
Y I V
Sbjct: 298 QEYIISP--VSYEE 309
>gnl|CDD|181039 PRK07572, PRK07572, cytosine deaminase; Validated.
Length = 426
Score = 28.8 bits (65), Expect = 6.5
Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
Query: 374 HPAKALGLEQHKGTLDFGADADFVILD 400
+PA+ +GLE + L+ G +AD V+L
Sbjct: 352 NPARIMGLEGY--GLEPGCNADLVLLQ 376
>gnl|CDD|238629 cd01304, FMDH_A, Formylmethanofuran dehydrogenase (FMDH) subunit A;
Methanogenic bacteria and archea derive the energy for
autotrophic growth from methanogenesis, the reduction of
CO2 with molecular hydrogen as the electron donor. FMDH
catalyzes the first step in methanogenesis, the
formyl-methanofuran synthesis. In this step, CO2 is
bound to methanofuran and subsequently reduced to the
formyl state with electrons derived from hydrogen.
Length = 541
Score = 28.5 bits (64), Expect = 7.5
Identities = 16/26 (61%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 375 PAKALGLEQHKGTLDFGADADFVILD 400
PAK LGL KG L GADAD I D
Sbjct: 440 PAKLLGLSD-KGHLGVGADADIAIYD 464
>gnl|CDD|180363 PRK06038, PRK06038, N-ethylammeline chlorohydrolase; Provisional.
Length = 430
Score = 28.6 bits (64), Expect = 7.5
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Query: 368 LEVASLHPAKALGLEQHKGTLDFGADADFVILD 400
LE+A+++ AKALG+ G L G AD +I+D
Sbjct: 334 LEMATVNGAKALGINT--GMLKEGYLADIIIVD 364
>gnl|CDD|233153 TIGR00857, pyrC_multi, dihydroorotase, multifunctional complex
type. In contrast to the homodimeric type of
dihydroorotase found in E. coli, this class tends to
appear in a large, multifunctional complex with
aspartate transcarbamoylase. Homologous domains appear
in multifunctional proteins of higher eukaryotes. In
some species, including Pseudomonas putida and P.
aeruginosa, this protein is inactive but is required as
a non-catalytic subunit of aspartate transcarbamoylase
(ATCase). In these species, a second, active
dihydroorotase is also present. The seed for this model
does not include any example of the dihydroorotase
domain of eukaryotic multidomain pyrimidine synthesis
proteins. All proteins described by This model should
represent active and inactive dihydroorotase per se and
functionally equivalent domains of multifunctional
proteins from higher eukaryotes, but exclude related
proteins such as allantoinase [Purines, pyrimidines,
nucleosides, and nucleotides, Pyrimidine ribonucleotide
biosynthesis].
Length = 411
Score = 28.6 bits (64), Expect = 7.7
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 363 SLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILD 400
SL + + S++PA+ GL KGTL+ G AD + D
Sbjct: 332 SLKDLIRMLSINPARIFGLPD-KGTLEEGNPADITVFD 368
>gnl|CDD|236055 PRK07575, PRK07575, dihydroorotase; Provisional.
Length = 438
Score = 28.5 bits (64), Expect = 8.4
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 361 RCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILDEGLHVYST 408
+C++ + S A+A G+ +KG + G DAD V++D L+ Y
Sbjct: 341 KCTVAQVVRWMSTAVARAYGIP-NKGRIAPGYDADLVLVD--LNTYRP 385
>gnl|CDD|119408 cd06660, Aldo_ket_red, Aldo-keto reductases (AKRs) are a
superfamily of soluble NAD(P)(H) oxidoreductases whose
chief purpose is to reduce aldehydes and ketones to
primary and secondary alcohols. AKRs are present in all
phyla and are of importance to both health and
industrial applications. Members have very distinct
functions and include the prokaryotic
2,5-diketo-D-gluconic acid reductases and beta-keto
ester reductases, the eukaryotic aldose reductases,
aldehyde reductases, hydroxysteroid dehydrogenases,
steroid 5beta-reductases, potassium channel
beta-subunits and aflatoxin aldehyde reductases, among
others.
Length = 285
Score = 27.9 bits (63), Expect = 8.7
Identities = 12/67 (17%), Positives = 29/67 (43%), Gaps = 11/67 (16%)
Query: 137 PELAGSMEVIDKLVEQGITVSLGHSSADINIAEEAVRHGASLIT------HLFN-----A 185
P++ ++ +++LV++G ++G S+ EEA+ +L +
Sbjct: 124 PDIEETLRALEELVKEGKIRAIGVSNFSAEQLEEALAAAGVPPAVNQVEYNLLDRQAEEE 183
Query: 186 MLPFHHR 192
+LP+
Sbjct: 184 LLPYCRE 190
>gnl|CDD|181059 PRK07627, PRK07627, dihydroorotase; Provisional.
Length = 425
Score = 28.1 bits (63), Expect = 9.1
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 360 TRCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILD 400
+ L AL + PA+ LGL G L GA AD + D
Sbjct: 343 AKVPLARALARITSAPARVLGLP--AGRLAEGAPADLCVFD 381
>gnl|CDD|219464 pfam07555, NAGidase, beta-N-acetylglucosaminidase. This family has
previously been described as a hyaluronidase. However,
more recently it has been shown that this family has
beta-N-acetylglucosaminidase activity.
Length = 306
Score = 28.0 bits (63), Expect = 9.3
Identities = 18/81 (22%), Positives = 29/81 (35%), Gaps = 21/81 (25%)
Query: 134 TLAPELAGSMEVI---DKLVEQGITVSLGHSSADINIAEEAVRHGASL----------IT 180
TL L ++++ D++V ITV D E + +
Sbjct: 174 TLGETLDPDIDIMWTGDRVVSGEITVE------DAEEVSEVLGRKPFIWDNYPVNDYDKG 227
Query: 181 HLFNAMLPFHHRDPGIIGLLS 201
L + P+ RDP +I LS
Sbjct: 228 RLL--LGPYDGRDPDLIEQLS 246
>gnl|CDD|180428 PRK06151, PRK06151, N-ethylammeline chlorohydrolase; Provisional.
Length = 488
Score = 28.1 bits (63), Expect = 9.7
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 2 ADFRFDCGGKLIAPGFIDI 20
D D G L+ PGFID+
Sbjct: 44 VDRVIDAGNALVGPGFIDL 62
>gnl|CDD|132622 TIGR03583, EF_0837, probable amidohydrolase EF_0837/AHA_3915.
Members of this family of relatively uncommon proteins
are found in both Gram-positive (e.g. Enterococcus
faecalis) and Gram-negative (e.g. Aeromonas hydrophila)
bacteria, as part of a cluster of conserved proteins.
These proteins resemble aminohydrolases (see pfam01979),
including dihydroorotases. The function is unknown
[Hypothetical proteins, Conserved].
Length = 365
Score = 28.1 bits (63), Expect = 9.8
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 363 SLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILD 400
SL +E + + A+ L L KG L G DAD I
Sbjct: 294 SLEEVIEKVTKNAAEILKL-TQKGRLQEGYDADLTIFT 330
>gnl|CDD|236062 PRK07583, PRK07583, cytosine deaminase-like protein; Validated.
Length = 438
Score = 28.0 bits (63), Expect = 9.8
Identities = 10/25 (40%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Query: 375 PAKALGLEQHKGTLDFGADADFVIL 399
PA +GL G + GA AD V+
Sbjct: 373 PADIMGLP-DLGRIAVGAPADLVLF 396
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.138 0.418
Gapped
Lambda K H
0.267 0.0733 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 21,617,678
Number of extensions: 2123881
Number of successful extensions: 2093
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2053
Number of HSP's successfully gapped: 125
Length of query: 417
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 318
Effective length of database: 6,546,556
Effective search space: 2081804808
Effective search space used: 2081804808
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (26.9 bits)