RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12256
(417 letters)
>2vhl_A N-acetylglucosamine-6-phosphate deacetylase; N-
acetyleglucosamine-6-phosphate, carbohydrate metabolism,
hydrolase; HET: GLP PGE; 2.05A {Bacillus subtilis}
Length = 396
Score = 321 bits (826), Expect = e-107
Identities = 115/414 (27%), Positives = 167/414 (40%), Gaps = 82/414 (19%)
Query: 7 DCGGKLIAPGFIDIQINGGFGVDFSHDIDSVDKNVSIVARGILAHGVTSFCPTLVTSEPQ 66
++ PG IDI I+GG+G D D+ + I++ + G TSF T +T E
Sbjct: 49 APADSVLLPGMIDIHIHGGYGADTM---DASFSTLDIMSSRLPEEGTTSFLATTITQEHG 105
Query: 67 VYKKVLSRLR----KTPGGKHGATVLGAHVEGPFISPDKKGAHSLSKIVTFDKG-FDSVR 121
+ L R GA +LG H+EGPF+SP + GA I D F +
Sbjct: 106 NISQALVNAREWKAAEESSLLGAELLGIHLEGPFVSPKRAGAQPKEWIRPSDVELFKKWQ 165
Query: 122 EVYGNLSNIAIITLAPELAGSMEVIDKLVEQGITVSLGHSSADINIAEEAVRHGASLITH 181
+ G L I I+TLAPE E+I L ++ I S+GH+ AD + +A + GAS +TH
Sbjct: 166 QEAGGL--IKIVTLAPEEDQHFELIRHLKDESIIASMGHTDADSALLSDAAKAGASHMTH 223
Query: 182 LFNAMLPFHHRDPGIIG-LLSSDNIDSSKVYYGIIADGVHTHPSALRIANSTHPEGHSSA 240
L+NAM PFHHR+PG+IG L+ D +IADG+H+HP A ++A
Sbjct: 224 LYNAMSPFHHREPGVIGTALAHDG-----FVTELIADGIHSHPLAAKLAFLAKGSSK--- 275
Query: 241 DIHIAEEAVRHGASLITHLFNAMLPFHHRDPGIIGLLSSDNIDSSKVYYGIIADGVHTHP 300
LIT ++M G+ V +
Sbjct: 276 ------------LILIT---DSMRAK-GLKDGVYEF------GGQSV---TVRGRT---- 306
Query: 301 SALRIANSTHPEGSITPFNGCVQFFMRSTRCSLWFDLGNCNNGGSITPFNGCVQFFMRST 360
+++ T GSI N + T CS
Sbjct: 307 --ALLSDGT-LAGSILKMNEGARHMREFTNCSWT-------------------------- 337
Query: 361 RCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILDEGLHVYSTWIAGDL 414
+ S + AK LG+ KG++ G DAD VI+ V T G++
Sbjct: 338 -----DIANITSENAAKQLGIFDRKGSVTVGKDADLVIVSSDCEVILTICRGNI 386
>1yrr_A N-acetylglucosamine-6-phosphate deacetylase; (beta/alpha)8 barrel,
beta sandwich, hydrolase; 2.00A {Escherichia coli} SCOP:
b.92.1.5 c.1.9.10 PDB: 1ymy_A 2p50_A 2p53_A*
Length = 382
Score = 274 bits (704), Expect = 2e-89
Identities = 80/231 (34%), Positives = 126/231 (54%), Gaps = 9/231 (3%)
Query: 7 DCGGKLIAPGFIDIQINGGFGVDFSHDIDSVDKN-VSIVARGILAHGVTSFCPTLVTSEP 65
G +++PGFID+Q+NG GV F+ ++V + I+ + G T++ PTL+T+
Sbjct: 45 SLNGAILSPGFIDVQLNGCGGVQFNDTAEAVSVETLEIMQKANEKSGCTNYLPTLITTSD 104
Query: 66 QVYKKVLSRLRKTPGGKHGATVLGAHVEGPFISPDKKGAHSLSKIVTFDKGFDSVREVYG 125
++ K+ + +R+ KH LG H+EGP+++ KKG H+ + + D V +
Sbjct: 105 ELMKQGVRVMREY-LAKHPNQALGLHLEGPWLNLVKKGTHNPNFVRKPDA--ALVDFLCE 161
Query: 126 NLSNIAIITLAPELAGSMEVIDKLVEQGITVSLGHSSADINIAEEAVRHGASLITHLFNA 185
N I +TLAPE+ EVI KL GI VS GHS+A + A+ R G + THL+NA
Sbjct: 162 NADVITKVTLAPEMVP-AEVISKLANAGIVVSAGHSNATLKEAKAGFRAGITFATHLYNA 220
Query: 186 MLPFHHRDPGIIGLLSSDNIDSSKVYYGIIADGVHTHPSALRIANSTHPEG 236
M R+PG+ G + +D + +Y GIIADG+H + +R A +
Sbjct: 221 MPYITGREPGLAGAI----LDEADIYCGIIADGLHVDYANIRNAKRLKGDK 267
Score = 175 bits (445), Expect = 5e-51
Identities = 54/195 (27%), Positives = 85/195 (43%), Gaps = 30/195 (15%)
Query: 236 GHSSADIHIAEEAVRHGASLITHLFNAMLPFHHRDPGIIGLLSSDNIDSSKVYYGIIADG 295
GHS+A + A+ R G + THL+NAM R+PG+ G + +D + +Y GIIADG
Sbjct: 194 GHSNATLKEAKAGFRAGITFATHLYNAMPYITGREPGLAGAI----LDEADIYCGIIADG 249
Query: 296 VHTHPSALRIANSTHPEGS--IT-------------PFNGCVQFFMRSTRCSLWFDLGNC 340
+H + +R A + +T F G + R+ C
Sbjct: 250 LHVDYANIRNAKRLKGDKLCLVTDATAPAGANIEQFIFAG-KTIYYRNGLCVD------- 301
Query: 341 NNG---GSITPFNGCVQFFMRSTRCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFV 397
NG GS V+ + +L L +A+L+PA+A+G+E+ GTL G A+
Sbjct: 302 ENGTLSGSSLTMIEGVRNLVEHCGIALDEVLRMATLYPARAIGVEKRLGTLAAGKVANLT 361
Query: 398 ILDEGLHVYSTWIAG 412
+ T + G
Sbjct: 362 AFTPDFKITKTIVNG 376
>3iv8_A N-acetylglucosamine-6-phosphate deacetylase; IDP01334, fruct
phosphate, carbohydrate metabolism, hydrolase; HET: F6P;
2.53A {Vibrio cholerae} PDB: 3egj_A*
Length = 381
Score = 272 bits (697), Expect = 3e-88
Identities = 87/230 (37%), Positives = 131/230 (56%), Gaps = 10/230 (4%)
Query: 7 DCGGKLIAPGFIDIQINGGFGVDFSHDIDSVDKNVSIVARGILAHGVTSFCPTLVTSEPQ 66
D G ++PGFID+Q+NG GV F+ +I + + + + L G TSF PTL+TS +
Sbjct: 48 DLNGANLSPGFIDLQLNGCGGVMFNDEIT--AETIDTMHKANLKSGCTSFLPTLITSSDE 105
Query: 67 VYKKVLSRLRKTPGGKHGATVLGAHVEGPFISPDKKGAHSLSKIVTFDKGFDSVREVYGN 126
++ ++ R+ K+ LG H+EGP+++ KKG HS+ I D + + N
Sbjct: 106 NMRQAIAAAREY-QAKYPNQSLGLHLEGPYLNVMKKGIHSVDFIRPSDDTM--IDTICAN 162
Query: 127 LSNIAIITLAPELAGSMEVIDKLVEQGITVSLGHSSADINIAEEAVRHGASLITHLFNAM 186
IA +TLAPE E I+KLV+ GI VS+GH++A + A ++ G + THLFNAM
Sbjct: 163 SDVIAKVTLAPENNK-PEHIEKLVKAGIVVSIGHTNATYSEARKSFESGITFATHLFNAM 221
Query: 187 LPFHHRDPGIIGLLSSDNIDSSKVYYGIIADGVHTHPSALRIANSTHPEG 236
P R+PG++G + D+ +VY GIIADG H + +RIA+ E
Sbjct: 222 TPMVGREPGVVGAI----YDTPEVYAGIIADGFHVDYANIRIAHKIKGEK 267
Score = 175 bits (446), Expect = 3e-51
Identities = 59/198 (29%), Positives = 93/198 (46%), Gaps = 30/198 (15%)
Query: 236 GHSSADIHIAEEAVRHGASLITHLFNAMLPFHHRDPGIIGLLSSDNIDSSKVYYGIIADG 295
GH++A A ++ G + THLFNAM P R+PG++G + D+ +VY GIIADG
Sbjct: 194 GHTNATYSEARKSFESGITFATHLFNAMTPMVGREPGVVGAI----YDTPEVYAGIIADG 249
Query: 296 VHTHPSALRIANSTHPEGS--IT-------------PFNGCVQFFMRSTRCSLWFDLGNC 340
H + +RIA+ E +T F G + + R +C
Sbjct: 250 FHVDYANIRIAHKIKGEKLVLVTDATAPAGAEMDYFIFVG-KKVYYRDGKCVD------- 301
Query: 341 NNG---GSITPFNGCVQFFMRSTRCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFV 397
NG GS VQ + +L AL +A+L+PAKA+G+++ G + G A+
Sbjct: 302 ENGTLGGSALTMIEAVQNTVEHVGIALDEALRMATLYPAKAIGVDEKLGRIKKGMIANLT 361
Query: 398 ILDEGLHVYSTWIAGDLK 415
+ D +V +T + G +
Sbjct: 362 VFDRDFNVKATVVNGQYE 379
>1o12_A N-acetylglucosamine-6-phosphate deacetylase; structural genomics,
TM0814, JCSG, PSI, protein structure initiative; 2.50A
{Thermotoga maritima} SCOP: b.92.1.5 c.1.9.10
Length = 376
Score = 266 bits (683), Expect = 3e-86
Identities = 67/223 (30%), Positives = 107/223 (47%), Gaps = 16/223 (7%)
Query: 7 DCGGKLIAPGFIDIQINGGFGVDFSHDIDSVDKNVSIVARGILAHGVTSFCPTLVTSEPQ 66
++ PGF+D I+G G D + + S + + + GVT+F T V++ +
Sbjct: 47 CIPRGVLMPGFVDPHIHGVVGADTM------NCDFSEMEEFLYSQGVTTFLATTVSTSLE 100
Query: 67 VYKKVLSRLRKTPGGKHGATVLGAHVEGPFISPDKKGAHSLSKIVTFDKGFDSVREVYGN 126
K++L + R ++LG H+EGP+IS +KKGAHS I RE+
Sbjct: 101 KMKEILRKARDYILENPSTSLLGVHLEGPYISKEKKGAHSEKHIRPPS-----ERELSEI 155
Query: 127 LSNIAIITLAPELAGSMEVIDKLVEQGITVSLGHSSADINIAEEAVRHGASLITHLFNAM 186
S ++T APE+ E++ +LV++ I +S GHS A + + G ITH N +
Sbjct: 156 DSPAKMLTFAPEIES-SELLLRLVKRDIVLSAGHSIATFEEFMKFYKEGVKRITHFPNGL 214
Query: 187 LPFHHRDPGIIGLLSSDNIDSSKVYYGIIADGVHTHPSALRIA 229
P HHR+ GI G + V +I DGVH +++
Sbjct: 215 KPLHHREIGITGAG----LLLDDVKLELICDGVHLSREMVKLV 253
Score = 165 bits (420), Expect = 2e-47
Identities = 51/198 (25%), Positives = 79/198 (39%), Gaps = 32/198 (16%)
Query: 236 GHSSADIHIAEEAVRHGASLITHLFNAMLPFHHRDPGIIGLLSSDNIDSSKVYYGIIADG 295
GHS A + + G ITH N + P HHR+ GI G + V +I DG
Sbjct: 187 GHSIATFEEFMKFYKEGVKRITHFPNGLKPLHHREIGITGAG----LLLDDVKLELICDG 242
Query: 296 VHTHPSALRIA-NSTHPEGS--IT-------------PFNGCVQFFMRSTRCSLWFDLGN 339
VH +++ G +T + ++ L
Sbjct: 243 VHLSREMVKLVYKVKKANGIVLVTDSISAAGLKDGTTTLGD-LVVKVKDGVPRL------ 295
Query: 340 CNNG---GSITPFNGCVQFFMRSTRCSLVHALEVASLHPAKALGLEQHKGTLDFGADADF 396
+G GS F+ V+ F + T CS+ +V+S + LGL+ +G + G AD
Sbjct: 296 -EDGTLAGSTLFFSQAVKNFRKFTGCSITELAKVSSYNSCVELGLD-DRGRIAEGTRADL 353
Query: 397 VILDEGLHVYSTWIAGDL 414
V+LDE L+V T G++
Sbjct: 354 VLLDEDLNVVMTIKEGEV 371
>1onw_A Isoaspartyl dipeptidase; amidohydrolase, hydrolase,
metalloprotease; HET: KCX; 1.65A {Escherichia coli}
SCOP: b.92.1.7 c.1.9.13 PDB: 1onx_A* 1po9_A* 1poj_A*
1pok_B* 2aqo_A* 1ybq_A* 2aqv_A*
Length = 390
Score = 154 bits (391), Expect = 4e-43
Identities = 58/415 (13%), Positives = 113/415 (27%), Gaps = 105/415 (25%)
Query: 7 DCGGKLIAPGFIDIQINGGFGVDF-SHDIDSVDKNVSIVARGILAHGVTSFCPTLVTSEP 65
D G+++ PGFID ++ G + + + GVTS L T
Sbjct: 54 DLSGQILCPGFIDQHVHLIGGGGEAGPTTRTP----EVALSRLTEAGVTSVVGLLGTDSI 109
Query: 66 QVYKKVLSRLRKTPGGKHGATVLGAHVEGPFISPDKKGAHSLSKIVTFDKGFDSVREVYG 125
+ + L + + + + G + P + S+ K V D V V
Sbjct: 110 SRHPESLLAKTR---ALNEEGISAWMLTGAYHVPSRTITGSVEKDVAI---IDRVIGVKC 163
Query: 126 NLSNIAIITLAPELAGSMEVIDKLVEQGIT--------VSLGHSSADINIAEEAVRHGAS 177
+S+ + AP++ + + G+ +G S + + + +
Sbjct: 164 AISDH--RSAAPDVYHLANMAAESRVGGLLGGKPGVTVFHMGDSKKALQPIYDLLENCDV 221
Query: 178 LITHLFNAMLPFHHRDPGIIGLLSSDNIDSSKVYYGIIADGVHTHPSALRIANSTHPEGH 237
I+ L +R+ + G ++ S
Sbjct: 222 PISKLLPTH---VNRNVPLFEQA-----------LEFARKGGTIDITS-----SIDEPVA 262
Query: 238 SSADIHIAEEAVRHGASLITHLFNAMLPFHHRDPGIIGLLSSDNIDSSKVYYGIIADGVH 297
+ I A + + + + +DG
Sbjct: 263 PAEGIARA---------------------------VQAGIPLARVT-------LSSDGNG 288
Query: 298 THPSALRIANSTHPEGSITPFNGCVQFFMRSTRCSLWFDLGNCNNGGSITPFNGCVQFFM 357
+ P EG++T VQ +
Sbjct: 289 SQPF-------FDDEGNLTHIGV-----------------------AGFETLLETVQVLV 318
Query: 358 RSTRCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILDEGLHVYSTWIAG 412
+ S+ AL + A L L KG + G DAD +++ L + + G
Sbjct: 319 KDYDFSISDALRPLTSSVAGFLNLT-GKGEILPGNDADLLVMTPELRIEQVYARG 372
>2ogj_A Dihydroorotase; TIM barrel, binuclear zinc, imidazole complex,
amido hydrola 9244B, structural genomics, PSI-2; HET:
KCX; 2.62A {Agrobacterium tumefaciens}
Length = 417
Score = 60.9 bits (147), Expect = 3e-10
Identities = 29/253 (11%), Positives = 73/253 (28%), Gaps = 26/253 (10%)
Query: 5 RFDCGGKLIAPGFIDIQINGGFGVDFSHDIDSVDKNVSIVARGILAHGVTSFCPTLVTSE 64
R D G I+PG++D+ ++ G + ++ G
Sbjct: 61 RIDAKGAFISPGWVDLHVHIWHGGTDISI-RPSECGAERGVTTLVDAGSAGE-ANFHGFR 118
Query: 65 PQVYKKVLSRLRKTPGGKHGATVLGAHVEGPFISPDKKGAHSLSKIVTFDKGFDSVREVY 124
+ + R++ ++ + + + + + + + +
Sbjct: 119 EYIIEPSRERIK-AFLNLGSIGLVACNRVPELRDIKDIDLDRI--LECYAENSEHIVGLK 175
Query: 125 GNLSNIAIITLAPELAGSMEVIDKLVEQGITVSLGHSSADINIAEEAVRHGASLITHLFN 184
S++ + + I K+++ + V +G A + E + G ++TH FN
Sbjct: 176 VRASHVITGSWGVTPVKLGKKIAKILKVPMMVHVGEPPALYDEVLEILGPGD-VVTHCFN 234
Query: 185 AMLPFHHRDPGIIGLLSSDNIDSSKVYYGIIADGVHTHPSALRIANSTHPEGHSSADIHI 244
+ + +R+ G +S +
Sbjct: 235 GKSGSSIMED-----------------EDLFNLAERCAGEGIRLDIGH---GGASFSFKV 274
Query: 245 AEEAVRHGASLIT 257
AE A+ G +
Sbjct: 275 AEAAIARGLLPFS 287
Score = 59.7 bits (144), Expect = 6e-10
Identities = 25/165 (15%), Positives = 46/165 (27%), Gaps = 21/165 (12%)
Query: 236 GHSSADIHIAEEAVRHGASLITHLFNAMLPFHHRDPGIIGLLSSDNIDSSKVYYGIIADG 295
G A E + G ++TH FN + +
Sbjct: 210 GEPPALYDEVLEILGPGD-VVTHCFNGKSGSSIMED-----------------EDLFNLA 251
Query: 296 VHTHPSALRIANSTHPEGSITPFNGCVQFFMRSTRCSLWFDLGNCNNGGSITPFNGCVQF 355
+R+ H S + S+ DL + + +
Sbjct: 252 ERCAGEGIRLD-IGHGGASFSFKVAEAAIARGLLPFSISTDLHGHSMNFPVWDLATTMSK 310
Query: 356 FMRSTRCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILD 400
+ + +E + +PA + L+ + LD G ADF + D
Sbjct: 311 LLS-VDMPFENVVEAVTRNPASVIRLD-MENRLDVGQRADFTVFD 353
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 57.0 bits (137), Expect = 7e-09
Identities = 73/404 (18%), Positives = 131/404 (32%), Gaps = 132/404 (32%)
Query: 61 VTSEPQVYKKVLSRLR--KTPGGKHGATVL-GAHVEGPFISPDKKGAHSLSKIVTFDK-- 115
+V+ + L+ L + P L + P I G L+ V K
Sbjct: 202 TLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLI-----GVIQLAHYVVTAKLL 256
Query: 116 GFDSVREVYGNLSNI-----AIIT-LAPELAGSMEVIDKLVEQGITVS--LG-------- 159
GF + E+ L ++T +A S E V + ITV +G
Sbjct: 257 GF-TPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYP 315
Query: 160 HSSADINIAEEAVRHG---------------ASLITHL--FNAMLPFHHRDPGI-IGLL- 200
++S +I E+++ + + ++ N+ LP + + I L+
Sbjct: 316 NTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQ---VEISLVN 372
Query: 201 SSDNIDSSKVYYGIIADGVHTHPSAL-----RIANSTHPEGHSSADIHIAEEAVRHGASL 255
+ N+ +++ G P +L + + P G + I +E ++
Sbjct: 373 GAKNL--------VVS-G---PPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLK----- 415
Query: 256 ITHLFNAM-LPFHHRDPGIIGLLSS--DNIDSSKVYYGIIADGVHTHPSALRIANSTHPE 312
++ F + PFH LL D I+ ++ + V + ++I
Sbjct: 416 FSNRFLPVASPFH--SH----LLVPASDLINKD-----LVKNNVSFNAKDIQI------- 457
Query: 313 GSITPFNGCVQFFMRSTRCSLWFDLGNCNNGGSITP------FNGCVQFFMRSTRCSLVH 366
P V T DL GSI+ V++ +T+ H
Sbjct: 458 ----P----V----YDTFD--GSDL--RVLSGSISERIVDCIIRLPVKW-ETTTQFKATH 500
Query: 367 ALEVASLHPAKALGLEQ--HK------------GTLDFGADADF 396
L+ P A GL H+ GTLD D D+
Sbjct: 501 ILD---FGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPDDDY 541
Score = 52.4 bits (125), Expect = 2e-07
Identities = 57/335 (17%), Positives = 100/335 (29%), Gaps = 117/335 (34%)
Query: 137 PELAGS-MEVIDKLVEQGITVSLGHSSADINIA----EEAVRHGASLITHLFNAMLPFHH 191
EL G + + LVE +G +N+ E G + H A L +
Sbjct: 58 AELVGKFLGYVSSLVEPS---KVGQFDQVLNLCLTEFENCYLEGNDI--HALAAKLLQEN 112
Query: 192 RDPGIIGLLSSDNIDSSKVYYGIIADGVHTHPSALRIANSTHPEGHSSADIHIAEEAVRH 251
L+ + + K Y +A +A + +SA +
Sbjct: 113 DTT----LVKTKEL--IKNYI-----------TARIMAKRPFDKKSNSA---LFRAVGEG 152
Query: 252 GASLITHLF----NAMLPF------HHRDPGIIG---------L--LSSDNIDSSKVYYG 290
A L+ +F N F + ++G L L +D+ KV+
Sbjct: 153 NAQLVA-IFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFT- 210
Query: 291 IIADGVHTHPSALRIANSTHPEG---SIT---PFNGCVQF--FMRSTRCSLWFDLGNCNN 342
G++ L ++T + SI P G +Q ++ +
Sbjct: 211 ---QGLNIL-EWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVT-----------AKL 255
Query: 343 GGSITPFN---------GCVQFFMRSTRCSLVHALEVA------SLHPA--KAL------ 379
G TP G Q LV A+ +A S + KA+
Sbjct: 256 LG-FTPGELRSYLKGATGHSQ--------GLVTAVAIAETDSWESFFVSVRKAITVLFFI 306
Query: 380 GLEQHKG----TLDFGADADFVILDEG-----LHV 405
G+ ++ +L D + +EG L +
Sbjct: 307 GVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSI 341
Score = 38.1 bits (88), Expect = 0.006
Identities = 57/319 (17%), Positives = 97/319 (30%), Gaps = 114/319 (35%)
Query: 31 SHDIDSVDKNVS--------IVARGILAHGVTSFCPTLVTSE---------PQV------ 67
+ +S +V I R A+ TS P+++ P +
Sbjct: 286 TDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLT 345
Query: 68 YKKVLSRLRKT----PGGKHGATVLGAHVEGPFISPDKKGAHSLSKIVTFDKGFDSVREV 123
++V + KT P GK L + +V+ G + +
Sbjct: 346 QEQVQDYVNKTNSHLPAGKQVEISL-------VNGAK-------NLVVS---GP--PQSL 386
Query: 124 YGNLSNIAIITLAPELAGSMEVIDKLVEQGITVSLGHSSADINIAEEAVRHGASLITHLF 183
YG L L + G + I +E ++ ++ F
Sbjct: 387 YG---------LNLTL------------RKAKAPSGLDQSRIPFSERKLK-----FSNRF 420
Query: 184 NAM-LPFH--HRDP---GIIGLLSSDNIDSSK------VYYGIIADGVHTHPSALRIANS 231
+ PFH P I L +N+ + VY DG LR+ +
Sbjct: 421 LPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYD--TFDGSD-----LRVLSG 473
Query: 232 THPEGHSSADIHIA---EEAVRHGASLITHLFNAMLPFHHRDPGI---IGLLSSDNIDSS 285
+ E I + E + A TH+ L F PG +G+L+ N D +
Sbjct: 474 SISERIVDCIIRLPVKWETTTQFKA---THI----LDF---GPGGASGLGVLTHRNKDGT 523
Query: 286 KVYYG---IIADGVHTHPS 301
G I+A + +P
Sbjct: 524 ----GVRVIVAGTLDINPD 538
Score = 28.5 bits (63), Expect = 5.4
Identities = 38/252 (15%), Positives = 60/252 (23%), Gaps = 112/252 (44%)
Query: 9 GGKLIAPGFIDIQINGGFGVDFSHDIDSVDKNVSIVARGILAHG------VTSFC-PTLV 61
GK I + + VD + + K ++ + T F P L
Sbjct: 1680 KGKRIRENYSAMIFETI--VDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALT 1737
Query: 62 TSEPQVYKKVLSRLRKTPGGKHGATVLGAHVEGPFISPDKKGAHSL---------SKIVT 112
E K L+ G A G HSL + +++
Sbjct: 1738 LME----KAAFEDLKS-----KGLIPADATFAG----------HSLGEYAALASLADVMS 1778
Query: 113 FDKGFDSVREVY--GNL------------SNIAIITLAPE-------------------- 138
+ V V+ G SN +I + P
Sbjct: 1779 IE---SLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGK 1835
Query: 139 -------------------LAGSMEVIDKLVE-------QGITVS-LGHSSADINIAEEA 171
AG + +D + Q I + L S ++ E
Sbjct: 1836 RTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKS-----LSLEE 1890
Query: 172 VRHGASLITHLF 183
V HLF
Sbjct: 1891 VE------GHLF 1896
>1gkr_A Hydantoinase, non-ATP dependent L-selective hydantoinase;
hydrolase, dihydropyrimidinase, cyclic amidase; HET:
KCX; 2.60A {Arthrobacter aurescens} SCOP: b.92.1.3
c.1.9.6
Length = 458
Score = 47.2 bits (113), Expect = 6e-06
Identities = 20/40 (50%), Positives = 24/40 (60%)
Query: 361 RCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILD 400
R SL +EV PAK G+ KGTL G+DAD +ILD
Sbjct: 354 RLSLERLVEVMCEKPAKLFGIYPQKGTLQVGSDADLLILD 393
>1gkp_A Hydantoinase; hydrolase, dihydropyrimidinase, cyclic amidase; HET:
KCX EPE; 1.29A {Thermus SP} SCOP: b.92.1.3 c.1.9.6 PDB:
1gkq_A*
Length = 458
Score = 46.8 bits (112), Expect = 8e-06
Identities = 16/40 (40%), Positives = 22/40 (55%)
Query: 361 RCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILD 400
R + ++ AS AK GL KGT+ G+DAD V+ D
Sbjct: 356 RLDIHRFVDAASTKAAKLFGLFPRKGTIAVGSDADLVVYD 395
>3sfw_A Dihydropyrimidinase; hydrolase, zinc binding; HET: KCX; 1.73A
{Brevibacillus agri} PDB: 1yny_A 1k1d_A*
Length = 461
Score = 46.8 bits (112), Expect = 8e-06
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 361 RCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILD 400
+ SL +++ S AK G+ KGT+ G+DAD V+ D
Sbjct: 358 KISLNQFVDITSTKVAKLFGMFPQKGTIAVGSDADIVLFD 397
>1nfg_A D-hydantoinase; TIM barrel, hydrolase; HET: KCX; 2.70A {Ralstonia
pickettii} SCOP: b.92.1.3 c.1.9.6
Length = 457
Score = 46.8 bits (112), Expect = 9e-06
Identities = 17/40 (42%), Positives = 24/40 (60%)
Query: 361 RCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILD 400
R SL +E+ + PAK G+ KGT+ G+DAD V+ D
Sbjct: 355 RISLTQFVELVATRPAKVFGMFPQKGTIAVGSDADIVLWD 394
>2ftw_A Dihydropyrimidine amidohydrolase; (beta-alpha)8-barrel,
beta-sandwich; HET: KCX; 2.05A {Dictyostelium
discoideum} SCOP: b.92.1.3 c.1.9.6
Length = 521
Score = 46.2 bits (110), Expect = 1e-05
Identities = 11/40 (27%), Positives = 17/40 (42%)
Query: 361 RCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILD 400
+ + + S A+ + KG +D G D D VI D
Sbjct: 367 KLTWCQFVRATSSERARIFNIYPRKGRIDVGCDGDIVIWD 406
>2vm8_A Dihydropyrimidinase-related protein 2; neurogenesis,
phosphoprotein, differentiation, CRMP, cytoplasm, TIM
barrel, polymorphism, axonal pathfinding; 1.9A {Homo
sapiens} PDB: 2gse_A 1kcx_A
Length = 501
Score = 46.1 bits (110), Expect = 1e-05
Identities = 14/40 (35%), Positives = 19/40 (47%)
Query: 361 RCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILD 400
+ + V S + AK L KG + G+DAD VI D
Sbjct: 385 KMDENQFVAVTSTNAAKVFNLYPRKGRIAVGSDADLVIWD 424
>2vr2_A Dihydropyrimidinase; hydantoinase, metal-binding, disease mutation,
dihydropyrimi amidohydrolase, nucleotide metabolism,
DPYS, dhpase, hydrolase; 2.80A {Homo sapiens}
Length = 541
Score = 45.4 bits (108), Expect = 2e-05
Identities = 14/40 (35%), Positives = 19/40 (47%)
Query: 361 RCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILD 400
+ + V S + AK L KG + G+DAD VI D
Sbjct: 390 KMDENRFVAVTSTNAAKIFNLYPRKGRIAVGSDADIVIWD 429
>3e74_A Allantoinase; (beta/alpha)8-barrel domain, small beta-sheet domain,
hydrolase, metal-binding, purine metabolism, zinc; HET:
KCX; 2.10A {Escherichia coli}
Length = 473
Score = 45.3 bits (108), Expect = 2e-05
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 361 RCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILD 400
SL ++ + + A GL+Q KG + G DADFV +
Sbjct: 374 GMSLPMFGKLMATNAADIFGLQQ-KGRIAPGKDADFVFIQ 412
Score = 28.0 bits (63), Expect = 6.1
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 2 ADFRFDCGGKLIAPGFIDIQ 21
A D G +++PG +D
Sbjct: 60 AKEVMDASGLVVSPGMVDAH 79
>3hm7_A Allantoinase; metallo-dependent hydrolase, protein structure
initiative, PSI-2, NEW YORK structural genomix research
CON nysgxrc; 2.60A {Bacillus halodurans}
Length = 448
Score = 45.3 bits (108), Expect = 3e-05
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 361 RCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILD 400
+ L +++ S PAK GL KGT+ GA+A F ++D
Sbjct: 357 KMPLTQIVQLLSTEPAKRFGLYPQKGTIQVGAEASFTLID 396
>2bb0_A Imidazolonepropionase; TIM barrel, hydrolase; 2.00A {Bacillus
subtilis} SCOP: b.92.1.10 c.1.9.17 PDB: 2g3f_A
Length = 421
Score = 44.4 bits (105), Expect = 5e-05
Identities = 14/75 (18%), Positives = 23/75 (30%), Gaps = 16/75 (21%)
Query: 351 GCVQFFMRSTRCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILDE--------- 401
+ M + +++ A A+G + G L G AD VI
Sbjct: 342 AALHLKM-----TAEEIWHAVTVNAAYAIGKGEEAGQLKAGRSADLVIWQAPNYMYIPYH 396
Query: 402 --GLHVYSTWIAGDL 414
HV+ G +
Sbjct: 397 YGVNHVHQVMKNGTI 411
Score = 30.1 bits (68), Expect = 1.6
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 2 ADFRFDCGGKLIAPGFID 19
AD DC G+L+ PG +D
Sbjct: 61 ADEIIDCSGRLVTPGLVD 78
>3dc8_A Dihydropyrimidinase; TIM-barrel, hydrolase; HET: KCX; 1.85A
{Sinorhizobium meliloti}
Length = 490
Score = 44.1 bits (105), Expect = 5e-05
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 361 RCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILD 400
R ++ + V S + AK L + KG + GADAD V+ D
Sbjct: 355 RITMNEFVAVTSTNIAKILNIYPKKGAILVGADADLVVWD 394
>2ics_A Adenine deaminase; TIM barrel, binuclear zinc, adenine complex,
amidohydrolase, structural genomics, PSI, protein
structure initiative; HET: KCX ADE; 2.30A {Enterococcus
faecalis} SCOP: b.92.1.8 c.1.9.14
Length = 379
Score = 44.0 bits (103), Expect = 5e-05
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 357 MRSTRCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILD 400
+R +E + PA+ L Q KGTL+ G DAD I
Sbjct: 293 LRVVGYDWPEIIEKVTKAPAENFHLTQ-KGTLEIGKDADLTIFT 335
>3ooq_A Amidohydrolase; structural genomics, protein structure INI NEW YORK
structural genomix research consortium, NYSGXRC, H
PSI-2; 2.06A {Thermotoga maritima}
Length = 396
Score = 43.9 bits (103), Expect = 7e-05
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Query: 366 HALEVASLHPAKALGLEQHKGTLDFGADADFVI-----LDEGLHVYSTWIAG 412
L++ +++PAK LGLE G+++ G DAD V+ D V +I G
Sbjct: 331 DLLKILTVNPAKILGLEDRIGSIEPGKDADLVVWSGHPFDMKSVVERVYIDG 382
>2puz_A Imidazolonepropionase; NYSGXRC, PSI-2, N-formimino-L- glutamate,
product-bound, structural genomics, protein STRU
initiative; HET: NIG; 1.83A {Agrobacterium tumefaciens
str} SCOP: b.92.1.10 c.1.9.17 PDB: 2gok_A
Length = 419
Score = 43.4 bits (102), Expect = 9e-05
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Query: 351 GCVQFFMRSTRCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILD 400
G F M ++ L + + AKALGL GTL+ G ADF I D
Sbjct: 347 GATLFRM-----TVEECLTATTRNAAKALGLLAETGTLEAGKSADFAIWD 391
Score = 30.3 bits (68), Expect = 1.4
Identities = 10/18 (55%), Positives = 11/18 (61%)
Query: 2 ADFRFDCGGKLIAPGFID 19
AD DCGG+ I P ID
Sbjct: 65 ADETTDCGGRWITPALID 82
>2q09_A Imidazolonepropionase; 9252H, NYSGXRC, 3-(2, 5-dioxo-imidazo
4YL)-propionic acid, PSI-2 community, structural
genomics, structure initiative; HET: DI6; 1.97A
{Unidentified} SCOP: b.92.1.10 c.1.9.17 PDB: 2oof_A*
Length = 416
Score = 42.5 bits (100), Expect = 2e-04
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 367 ALEVASLHPAKALGLEQHKGTLDFGADADFVILD 400
A+ + H A+ALG ++ G L G ADF++ +
Sbjct: 346 AMAGVTRHAARALGEQEQLGQLRVGMLADFLVWN 379
Score = 29.4 bits (66), Expect = 2.3
Identities = 8/18 (44%), Positives = 9/18 (50%)
Query: 2 ADFRFDCGGKLIAPGFID 19
D GKL+ PG ID
Sbjct: 53 PAHWQDMKGKLVTPGLID 70
>2gwn_A Dihydroorotase; zinc-binding prote structural genomics, PSI,
protein structure initiative, MID center for structural
genomics, MCSG; HET: KCX GOL; 1.85A {Porphyromonas
gingivalis}
Length = 452
Score = 42.2 bits (100), Expect = 3e-04
Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 361 RCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILD 400
S+ + + PA +E+ +G + G AD V++D
Sbjct: 354 IFSIEEIVSKTAHIPATLFAIEK-RGYIRPGYYADLVLVD 392
Score = 30.6 bits (70), Expect = 1.1
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 2 ADFRFDCGGKLIAPGFIDIQ 21
AD +C G + PG ID Q
Sbjct: 47 ADEVIECSGLRLFPGCIDDQ 66
>4aql_A Guanine deaminase; hydrolase, purine metabolism; HET: TXC; 1.99A
{Homo sapiens} PDB: 2uz9_A* 3e0l_A
Length = 476
Score = 40.4 bits (95), Expect = 8e-04
Identities = 10/44 (22%), Positives = 23/44 (52%)
Query: 357 MRSTRCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILD 400
+ +L +A+L ++ALGL+ G + G + D ++++
Sbjct: 380 VNEKSLTLKEVFRLATLGGSQALGLDGEIGNFEVGKEFDAILIN 423
>3gri_A Dihydroorotase, dhoase; hydrolase, IDP00795, metal-binding,
pyrimidine biosynthesis, structural genomics; 2.00A
{Staphylococcus aureus subsp}
Length = 424
Score = 40.2 bits (95), Expect = 0.001
Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Query: 352 CVQFFMRSTRCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILD 400
F+++ +L ++ ++ P + LE GTL AD I+D
Sbjct: 333 LYTHFVKNGDWTLQQLVDYLTIKPCETFNLE--YGTLKENGYADLTIID 379
Score = 30.5 bits (70), Expect = 1.1
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 2 ADFRFDCGGKLIAPGFIDI 20
D G ++PGF+D+
Sbjct: 39 GVDIIDAKGHFVSPGFVDV 57
>2z00_A Dihydroorotase; zinc binding protein, hydrolase, metal-binding,
pyrimidine biosynthesis, structural genomics, NPPSFA;
2.42A {Thermus thermophilus}
Length = 426
Score = 39.8 bits (94), Expect = 0.001
Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 2/46 (4%)
Query: 356 FMRSTRCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILDE 401
L +E+ + P + LGL L+ GA+A V+L
Sbjct: 340 LHLKRGFPLQRLVELFTDGPRRVLGLP--PLHLEEGAEASLVLLSP 383
Score = 30.2 bits (69), Expect = 1.3
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 2 ADFRFDCGGKLIAPGFIDI 20
A D G +APGF+D+
Sbjct: 36 AKQVVDGTGCFLAPGFLDL 54
>3mpg_A Dihydroorotase, dhoase; hydrolase; 2.60A {Bacillus anthracis}
Length = 428
Score = 39.8 bits (94), Expect = 0.001
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 356 FMRSTRCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILD 400
++ +L ++ + PA GLE G L G AD I+D
Sbjct: 338 LVKKGIITLEQLIQFLTEKPADTFGLE--AGRLKEGRTADITIID 380
Score = 30.2 bits (69), Expect = 1.2
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 6 FDCGGKLIAPGFIDI 20
D GKLIAPG +D+
Sbjct: 44 IDVNGKLIAPGLVDV 58
>3icj_A Uncharacterized metal-dependent hydrolase; structural genomics,
amidohydrolase, PSI-2, protein structur initiative; HET:
KCX; 1.95A {Pyrococcus furiosus} PDB: 3etk_A* 3igh_X*
Length = 534
Score = 39.9 bits (94), Expect = 0.001
Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 8/59 (13%)
Query: 361 RCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILDE-------GLHVYSTWIAG 412
R S AL + + A+ E G L+ G A+++ILD G+ +T
Sbjct: 460 RVSREEALHLYTHGSAQVTLAE-DLGKLERGFRAEYIILDRDPLKEMKGIITITTDPNS 517
>1xrt_A Dihydroorotase, dhoase; amidohydrolase, metalloenzyme, pyrimidine;
1.61A {Aquifex aeolicus} SCOP: b.92.1.3 c.1.9.6 PDB:
1xrf_A 3d6n_A*
Length = 467
Score = 39.5 bits (93), Expect = 0.002
Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 363 SLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILD 400
SL +E+ +++PA+ +G++ GTL G+ AD I D
Sbjct: 389 SLKKLIEMFTINPARIIGVD--LGTLKLGSPADITIFD 424
Score = 30.2 bits (69), Expect = 1.4
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 6 FDCGGKLIAPGFIDI 20
D G ++ PGFIDI
Sbjct: 91 IDAKGLIVCPGFIDI 105
>2ood_A BLR3880 protein; PSI-II, PSI-2, guanine deaminase, guanine,
structural genomics, protein structure initiative; HET:
GUN; 2.62A {Bradyrhizobium japonicum} SCOP: b.92.1.4
c.1.9.9
Length = 475
Score = 39.3 bits (92), Expect = 0.002
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 360 TRCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILD 400
+ S +L A+ L ++ G + G +ADFV LD
Sbjct: 370 NKLSPYRGFWSVTLGGAEGLYIDDKLGNFEPGKEADFVALD 410
>3nqb_A Adenine deaminase 2; PSI-II, structural genomics, protein structure
initiative, N SGX research center for structural
genomics, nysgxrc; 2.21A {Agrobacterium tumefaciens}
PDB: 3t81_A 3t8l_A
Length = 608
Score = 39.2 bits (91), Expect = 0.002
Identities = 14/55 (25%), Positives = 21/55 (38%), Gaps = 3/55 (5%)
Query: 362 CSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILD--EGLHVYSTWIAGDL 414
AL A+L+ A+ LG G + G AD V+ + G +G
Sbjct: 317 LKPEWALRAATLNAAQRLGR-SDLGLIAAGRRADIVVFEDLNGFSARHVLASGRA 370
Score = 33.5 bits (76), Expect = 0.12
Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 10/52 (19%)
Query: 7 DCGGKLIAPGFIDIQINGGFGVDFSHDIDSVDKNVSIVARGILAHGVTSFCP 58
D GG ++PG ID + H I+S + A ++A GVT+
Sbjct: 81 DAGGAYVSPGLIDTHM---------H-IESSMITPAAYAAAVVARGVTTIVW 122
>2qt3_A N-isopropylammelide isopropyl amidohydrolase; N-isopropylammelide
isopropylaminohydrolase ATZC, structural genomics,
NYSGXRC, target 9364B; 2.24A {Pseudomonas SP}
Length = 403
Score = 39.1 bits (91), Expect = 0.002
Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 359 STRCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILD 400
T L ++ + A+ LG+E ++ G AD V+L+
Sbjct: 331 KTNRDLGLIWKMITSEGARVLGIE-KNYGIEVGKKADLVVLN 371
>2fty_A Dihydropyrimidinase; alpha/beta barrel, beta-sandwich, hydrolase;
HET: KCX; 2.40A {Lachancea kluyveri} SCOP: b.92.1.3
c.1.9.6 PDB: 2fvk_A* 2fvm_A*
Length = 559
Score = 39.0 bits (91), Expect = 0.002
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 369 EVASLHPAKALGLEQHKGTLDFG-ADADFVILD 400
E+ +PAK G+ KG++ G +DAD VI
Sbjct: 421 EIQCTNPAKVYGMYPQKGSILPGVSDADLVIWY 453
Score = 29.4 bits (66), Expect = 2.7
Identities = 13/77 (16%), Positives = 20/77 (25%), Gaps = 11/77 (14%)
Query: 2 ADFRFDCGGKLIAPGFID----IQINGGFGVDFSHDIDSVDKNVSIVARGILAHGVTSFC 57
D G I PG ID + D ++ R +A G T+
Sbjct: 42 GSEVIDAEGAFITPGGIDAHVHVDEPLKLLGDVVDTMEH-------ATRSAVAGGTTTVV 94
Query: 58 PTLVTSEPQVYKKVLSR 74
+ L+
Sbjct: 95 AFSTQDVSKKGPSALAE 111
>4dyk_A Amidohydrolase; adenosine deaminase, nysgrc, structural GENO
PSI-biology, NEW YORK structural genomics research
consorti hydrolase; 2.00A {Pseudomonas aeruginosa}
Length = 451
Score = 39.1 bits (92), Expect = 0.002
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 20/66 (30%)
Query: 367 ALEVASLHPAKALGLEQHKGTLDFGADADFVILD-EGLH-----------VYS------- 407
AL +A+L+ A+ALGLE+ G+L+ G AD V D GL +Y+
Sbjct: 345 ALRMATLNGARALGLERLIGSLEAGKAADLVAFDLSGLAQQPVYDPVSQLIYASGRDCVR 404
Query: 408 -TWIAG 412
W+ G
Sbjct: 405 HVWVGG 410
>2vun_A Enamidase; nicotinate degradation, binuclear metal center,
amidohydrolases, stereospecificity, hydrolase; 1.89A
{Eubacterium barkeri}
Length = 386
Score = 38.8 bits (90), Expect = 0.003
Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 362 CSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILDEGLH 404
A+ +A+ + GL G + G +AD +I+D L
Sbjct: 301 IDPEVAVCMATGNSTAVYGLN--TGVIAPGKEADLIIMDTPLG 341
Score = 30.7 bits (69), Expect = 1.0
Identities = 11/60 (18%), Positives = 17/60 (28%), Gaps = 14/60 (23%)
Query: 2 ADFRFDCGGKLIAPGFIDIQINGGFGVDFSHDIDSVD----KNVSIVARGILAHGVTSFC 57
D G + PG +D + H + D + L GVT+
Sbjct: 48 DATIIDAAGSTVTPGLLDTHV---------H-VSGGDYAPRQKTMDFISSALHGGVTTMI 97
>4dzh_A Amidohydrolase; adenosine deaminase, nysgrc, structural GENO YORK
structural genomics research consortium; 1.55A
{Xanthomonas campestris PV}
Length = 472
Score = 38.3 bits (90), Expect = 0.004
Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 20/66 (30%)
Query: 367 ALEVASLHPAKALGLEQHKGTLDFGADADFVILD-EGLH-----------VYS------- 407
L A+L A+ALG G+++ G AD V +D L +Y+
Sbjct: 352 TLRAATLGGARALGFGDRIGSIEVGKQADLVCVDLSALETQPLHHVLSQLIYAAGRHQVT 411
Query: 408 -TWIAG 412
WIAG
Sbjct: 412 DVWIAG 417
>3lnp_A Amidohydrolase family protein OLEI01672_1_465; TIM barrel,
beta-fold, structural genomics, PSI-2, protein structure
initiative; HET: MSE; 2.10A {Oleispira antarctica}
Length = 468
Score = 38.4 bits (90), Expect = 0.004
Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 20/66 (30%)
Query: 367 ALEVASLHPAKALGLEQHKGTLDFGADADFVILD-EGLH-----------VYS------- 407
AL +A+L A+ALG++ G+L G AD +D L VY
Sbjct: 370 ALTMATLGGARALGIDDITGSLKPGKAADIQAIDLNTLSSQPVFDPVSHMVYCTKSTQVS 429
Query: 408 -TWIAG 412
W+ G
Sbjct: 430 HVWVNG 435
>4f0r_A 5-methylthioadenosine/S-adenosylhomocysteine DEAM; structural
genomics, PSI-biology; HET: MSE MTA; 1.80A
{Chromobacterium violaceum} PDB: 4f0s_A*
Length = 447
Score = 37.9 bits (89), Expect = 0.005
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 20/66 (30%)
Query: 367 ALEVASLHPAKALGLEQHKGTLDFGADADFVILD-EGLH-----------VYS------- 407
A+ +A+L+ A+ALG+ G++ G AD + LD L VY+
Sbjct: 343 AIRMATLNGARALGIADKVGSVKVGKQADLIALDLAQLETAPAFDPISHVVYAAGREQVS 402
Query: 408 -TWIAG 412
W+ G
Sbjct: 403 HVWVKG 408
>1ra0_A Cytosine deaminase; alpha-beta barrel, hexamer, conformation
change, D314G mutant, hydrolase; 1.12A {Escherichia
coli} SCOP: b.92.1.2 c.1.9.5 PDB: 1r9x_A 1ra5_A 1r9y_A
1r9z_A 1rak_A 3r0d_A* 3o7u_A* 3rn6_A* 1k6w_A 1k70_A
3g77_A
Length = 430
Score = 37.7 bits (87), Expect = 0.007
Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 363 SLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILD 400
+ L + + H A+ L L+ + G A+ +IL
Sbjct: 349 QINDGLNLITHHSARTLNLQD--YGIAAGNSANLIILP 384
>1e9y_B Urease subunit beta; hydrolase, dodecamer; HET: KCX; 3.00A
{Helicobacter pylori} SCOP: b.92.1.1 c.1.9.2 PDB:
1e9z_B* 3qga_C* 3qgk_C*
Length = 569
Score = 37.7 bits (87), Expect = 0.007
Identities = 40/264 (15%), Positives = 77/264 (29%), Gaps = 57/264 (21%)
Query: 140 AGSMEVIDKLVEQGITVSLGHSSAD-INIAEEAVRHGASLITHLFNAMLPFHHRDPGIIG 198
+ +D + + V++ + + E+ + A H F+ P II
Sbjct: 229 SAINHALDVADKYDVQVAIHTDTLNEAGCVEDTMAAIAGRTMHTFHTEGAGGGHAPDIIK 288
Query: 199 LLSSDNID--SSKVYYGIIADGVHTHPSALRIANSTHPEGHSSADIHIAEEAVRHGASLI 256
+ NI S+ + H L + + +E V+ S I
Sbjct: 289 VAGEHNILPASTNPTIPFTVNTEAEHMDMLMVCHHKDKSI---------KEDVQFADSRI 339
Query: 257 THLFNAMLPFHHRDPGIIGLLSSDNIDSSKVYYGIIADGVHTHPSALRIANSTHPEGSIT 316
A H D G + SSD+ + G R +
Sbjct: 340 RPQTIAAEDTLH-DMGAFSITSSDS--QAMGRVG---------EVITRTWQTAD------ 381
Query: 317 PFNGCVQFFMRSTRCSLWFDLGNCNNGGSITPFNGCVQFFMRSTRCSLVHALEVASLHPA 376
+ L + G+ +N + L +++PA
Sbjct: 382 --------KNKKEFGRLKEEKGDNDN-------------------FRIKRYLSKYTINPA 414
Query: 377 KALGLEQHKGTLDFGADADFVILD 400
A G+ ++ G+++ G AD V+
Sbjct: 415 IAHGISEYVGSVEVGKVADLVLWS 438
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.5 bits (86), Expect = 0.008
Identities = 43/297 (14%), Positives = 81/297 (27%), Gaps = 99/297 (33%)
Query: 34 IDSV-DKNVSIVARGILAHGVTSF---CPTLVTSEPQVYKKVLSRLRKTPGGKHGATVLG 89
+ +V + +F C L+T+ +K+V L +
Sbjct: 250 LLNVQNAKA-----------WNAFNLSCKILLTTR---FKQVTDFL----SAATTTHISL 291
Query: 90 AHVEGPFISPDKKGAHSLSKIVTFDKGFDSVREVY-GNLSNIAII--------------- 133
H + K L K + D REV N ++II
Sbjct: 292 DHHSMTLTPDEVKSL--LLKYLDCRP-QDLPREVLTTNPRRLSIIAESIRDGLATWDNWK 348
Query: 134 -----TLAPELAGSMEVIDKLVEQGITVSLGHSSADINIAEEAVRHGASLITHLFNAMLP 188
L + S+ V++ + + L +I L++ ++ ++
Sbjct: 349 HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTI-------LLSLIWFDVIK 401
Query: 189 FHHRDPGII-------GLLSSDNIDSSKVYYGIIADGVHTHPSALRIANSTHPEGHSSAD 241
D ++ L+ +S+ I +
Sbjct: 402 ---SDVMVVVNKLHKYSLVEKQPKESTISIPSI----------------------YLELK 436
Query: 242 IHIAEEAVRHGASLITHLFNAMLPFHHRDPGIIGLLSSDNIDSSKVY-YGIIADGVH 297
+ + E H S++ H +N F D L +D Y Y I G H
Sbjct: 437 VKLENEYALH-RSIVDH-YNIPKTFDSDD------LIPPYLDQ---YFYSHI--GHH 480
Score = 34.8 bits (79), Expect = 0.067
Identities = 35/334 (10%), Positives = 87/334 (26%), Gaps = 119/334 (35%)
Query: 105 HSLSKIV-----TFDKGFDSVREVYGNLSNI-------AIITLAPELAGSMEVIDKLVEQ 152
+ I+ F FD ++V +I II ++G++ + L+ +
Sbjct: 16 YQYKDILSVFEDAFVDNFD-CKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSK 74
Query: 153 GITVSLGHSSADINIAEEAVRHGASLITHLFNAMLPFHHRDPGIIGLLSSDNIDSSKVYY 212
+ ++ V +L + Y
Sbjct: 75 QE-----------EMVQKFVE------------------------EVLRIN--------Y 91
Query: 213 GIIADGVHTH---PSALRIA-----NSTHPEGHSSADIHIA-EEAVRHGASLITHLFNAM 263
+ + T PS + + + + A +++ + L L
Sbjct: 92 KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYL---KLRQALLE-- 146
Query: 264 LPFHHRDPGIIGLLSSDNIDSSKVYYGIIADGVHTHPSALRIANSTHPEGSITPFNGCVQ 323
L + N+ + G++ G + + + + +
Sbjct: 147 ------------LRPAKNV----LIDGVLGSG----KTWV-ALDVCLSYKVQCKMDFKI- 184
Query: 324 FFMRSTRCSLWFDLGNCNNGGSITPF--NGCVQFFMRSTR-----CSLVHALEVASLHPA 376
F W +L NCN+ ++ Q T ++ +
Sbjct: 185 -F--------WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235
Query: 377 KALGLEQHKGTLDFGADADFVILDEGLHVYSTWI 410
+ L + ++ L ++L +V +
Sbjct: 236 RLLKSKPYENCL--------LVLL---NVQNAKA 258
>3v7p_A Amidohydrolase family protein; iron binding site, enzyme functio
initiative, EFI; HET: TLA; 1.35A {Nitratiruptor SP}
Length = 427
Score = 36.1 bits (84), Expect = 0.020
Identities = 13/63 (20%), Positives = 21/63 (33%), Gaps = 19/63 (30%)
Query: 367 ALEVASLHPAKALGLEQHKGTLDFGADADFVILD-----EGLH------VYS------TW 409
+ A+ ALG E G + G DAD ++D + + +
Sbjct: 339 LIIRATKAGYDALGFE--GGEIAVGKDADMQLIDLPEGLTNVEDLYLHVILHTTKPKKVY 396
Query: 410 IAG 412
I G
Sbjct: 397 IQG 399
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.5 bits (78), Expect = 0.024
Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 10/35 (28%)
Query: 64 EPQVYKKVLSRLRK-----TPGGKHGATVLGAHVE 93
E Q KK+ + L+ P A + A +E
Sbjct: 18 EKQALKKLQASLKLYADDSAP-----ALAIKATME 47
>3h4u_A Amidohydrolase; signature of Zn ligands, structural genomics,
NYSGXRC, target 9236E, PSI-2, protein structure
initiative; 2.20A {Unidentified} PDB: 3hpa_A
Length = 479
Score = 35.3 bits (82), Expect = 0.034
Identities = 18/66 (27%), Positives = 23/66 (34%), Gaps = 21/66 (31%)
Query: 367 ALEVASLHPAKALGLEQHKGTLDFGADADFVILD-EGLH------------VYS------ 407
ALE+A+L AK L + G L G ADF D V+
Sbjct: 382 ALEIATLGGAKVLNRDDI-GALKPGMAADFAAFDLRQPLFAGALHDPVAALVFCAPSQTA 440
Query: 408 -TWIAG 412
T + G
Sbjct: 441 YTVVNG 446
>3ls9_A Triazine hydrolase; atrazine chlorohydrolase TRZN; 1.40A
{Arthrobacter aurescens} PDB: 3lsc_A* 3lsb_A*
Length = 456
Score = 34.9 bits (81), Expect = 0.042
Identities = 12/66 (18%), Positives = 21/66 (31%), Gaps = 21/66 (31%)
Query: 367 ALEVASLHPAKALGLEQHKGTLDFGADADFVILD-EGLH-----------VYS------- 407
L +A+ A+ LG G L+ G AD +G+ + +
Sbjct: 363 LLRMATRGSAECLGRPDL-GVLEEGRAADIACWRLDGVDRVGVHDPAIGLIMTGLSDRAS 421
Query: 408 -TWIAG 412
+ G
Sbjct: 422 LVVVNG 427
>2paj_A Putative cytosine/guanine deaminase; NYSGXRC, PSI-II,
amidohydrolase, sargasso SEA, enviro sample, structural
genomics; 2.70A {Unidentified} SCOP: b.92.1.4 c.1.9.9
Length = 492
Score = 35.0 bits (81), Expect = 0.048
Identities = 14/66 (21%), Positives = 23/66 (34%), Gaps = 21/66 (31%)
Query: 367 ALEVASLHPAKALGLEQHKGTLDFGADADFVILD------EGLH------VYS------- 407
+ + A+ +GL++ G + G AD + GLH V S
Sbjct: 386 VIHWGTAGGARVMGLDEV-GKVAVGYAADIAVYRLDDPRYFGLHDPAIGPVASGGRPSVM 444
Query: 408 -TWIAG 412
+ AG
Sbjct: 445 ALFSAG 450
>1p1m_A Hypothetical protein TM0936; putative metal dependent hydrolase,
PSI, protein structure initiative; 1.50A {Thermotoga
maritima} SCOP: b.92.1.4 c.1.9.9 PDB: 2plm_A* 1j6p_A
Length = 406
Score = 34.1 bits (79), Expect = 0.072
Identities = 14/65 (21%), Positives = 29/65 (44%), Gaps = 21/65 (32%)
Query: 367 ALEVASLHPAKALGLEQHKGTLDFGADADFVILD-EGLH-----------VYS------- 407
L++ + A+A+G + G ++ G +AD V++D + V++
Sbjct: 313 CLKMVTYDGAQAMGFKS--GKIEEGWNADLVVIDLDLPEMFPVQNIKNHLVHAFSGEVFA 370
Query: 408 TWIAG 412
T +AG
Sbjct: 371 TMVAG 375
>4ubp_C Protein (urease (chain C)); bacillus pasteurii, nickel,
acetohydroxamic acid, metalloenzyme, hydrolase; HET:
KCX; 1.55A {Sporosarcina pasteurii} SCOP: b.92.1.1
c.1.9.2 PDB: 1s3t_C* 2ubp_C* 3ubp_C* 1ubp_C* 1ie7_C*
Length = 570
Score = 34.3 bits (78), Expect = 0.084
Identities = 10/38 (26%), Positives = 19/38 (50%)
Query: 361 RCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVI 398
L + +++PA A G+ G+++ G AD V+
Sbjct: 400 NFRLKRYVSKYTINPAIAQGIAHEVGSIEEGKFADLVL 437
>3feq_A Putative amidohydrolase; unknown source, sargasso SEA, structural
genomics, protein structure initiative, PSI; 2.63A
{Unidentified} PDB: 3lwy_A* 3n2c_A*
Length = 423
Score = 33.9 bits (78), Expect = 0.10
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 367 ALEVASLHPAKALGLEQHKGTLDFGADADFVILD 400
AL A+ A+ + ++ G + GA AD V+LD
Sbjct: 348 ALRSATTVAAEIVNMQGQLGVIAVGAIADLVVLD 381
>2p9b_A Possible prolidase; protein structure initiative II, PSI-2,
amidohydrolase, structural genomics; 1.70A
{Bifidobacterium longum NCC2705} SCOP: b.92.1.10
c.1.9.17
Length = 458
Score = 33.6 bits (77), Expect = 0.11
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 367 ALEVASLHPAKALGLEQHKGTLDFGADADFVILD 400
AL A+ A LG++ G+L+ G AD ++L+
Sbjct: 374 ALHAATAVNASILGVDAETGSLEVGKSADLLVLN 407
>3gnh_A L-lysine, L-arginine carboxypeptidase CC2672; N-methyl phosphonate
derivative of L- arginine, hydrolase; HET: KCX M3R;
1.70A {Caulobacter crescentus CB15} PDB: 3mtw_A*
Length = 403
Score = 33.8 bits (78), Expect = 0.11
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 367 ALEVASLHPAKALGLEQHKGTLDFGADADFVILD 400
A++ A+L A+ALG + G + G D + +
Sbjct: 344 AIQSATLTAAEALGRSKDVGQVAVGRYGDMIAVA 377
>2r8c_A Putative amidohydrolase; unknown source, sargasso SEA, structural
genomics, protein structure initiative, PSI; 2.31A
{Unidentified} SCOP: b.92.1.9 c.1.9.18 PDB: 3mkv_A*
Length = 426
Score = 33.5 bits (77), Expect = 0.12
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 367 ALEVASLHPAKALGLEQHKGTLDFGADADFVILD 400
+ A++ A+ LG++ G + GA AD +++D
Sbjct: 351 VIASATIVSAEVLGMQDKLGRIVPGAHADVLVVD 384
>3gip_A N-acyl-D-glutamate deacylase; amidohydrolase family, hydrolase;
1.50A {Bordetella bronchiseptica} PDB: 3giq_A*
Length = 480
Score = 33.4 bits (76), Expect = 0.14
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 363 SLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILD 400
+L A+ + PA+ G +G L GA AD V+ D
Sbjct: 396 TLEQAVARMTALPARVFGF-AERGVLQPGAWADVVVFD 432
Score = 33.4 bits (76), Expect = 0.14
Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 11/54 (20%)
Query: 2 ADFRFDCGGKLIAPGFIDIQINGGFGVDFSHDIDSVDKNVSIVARGILAHGVTS 55
A +D GK++APGFID+ HD + R + G+T+
Sbjct: 47 ARHAWDASGKIVAPGFIDVH---------GHDDLMFVEKPD--LRWKTSQGITT 89
>2qs8_A XAA-Pro dipeptidase; amidohydrolase, TIM barrel, protein structure
initiative, PSI-2, NYSGXRC, structural genomics; 2.33A
{Alteromonas macleodii} SCOP: b.92.1.9 c.1.9.18
Length = 418
Score = 33.1 bits (76), Expect = 0.14
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 367 ALEVASLHPAKALGLEQHKGTLDFGADADFVILD 400
A++ A++ AK L +E G+++ G AD + +
Sbjct: 354 AIQSATMETAKLLRIEDKLGSIESGKLADLIAVK 387
>1rk6_A D-aminoacylase; TIM barrel, beta barrel, insertion, hydrolase;
1.43A {Alcaligenes faecalis} SCOP: b.92.1.6 b.92.1.6
c.1.9.11 PDB: 1rjp_A 1v51_A 1rjq_A 1rjr_A 1rk5_A 1v4y_A
1m7j_A
Length = 496
Score = 33.0 bits (75), Expect = 0.17
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 11/54 (20%)
Query: 2 ADFRFDCGGKLIAPGFIDIQINGGFGVDFSHDIDSVDKNVSIVARGILAHGVTS 55
A R D GK+++PGFID +HD + + K+ ++ GVT+
Sbjct: 61 ARRRIDVAGKVVSPGFIDSH---------THDDNYLLKHRD--MTPKISQGVTT 103
Score = 32.7 bits (74), Expect = 0.22
Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 363 SLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILD 400
L A+ + A GL +G + G AD V+ D
Sbjct: 410 PLETAVWKMTGLTAAKFGL-AERGQVQPGYYADLVVFD 446
>2i9u_A Cytosine/guanine deaminase related protein; protein structure
initiative II (PSI-II), amidohydrol guanine deaminase;
HET: GUN; 2.05A {Clostridium acetobutylicum} SCOP:
b.92.1.4 c.1.9.9
Length = 439
Score = 31.4 bits (72), Expect = 0.56
Identities = 8/41 (19%), Positives = 16/41 (39%), Gaps = 3/41 (7%)
Query: 360 TRCSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVILD 400
S A +A+ G G+ + G D D ++++
Sbjct: 352 MFLSTSEAFYMATKKGGSFFG---KVGSFEEGYDFDALVIN 389
>3qxg_A Inorganic pyrophosphatase; hydrolase, magnesium binding site, NEW
YORK research center for structural genomics; HET: TLA;
1.24A {Bacteroides thetaiotaomicron} PDB: 3qu2_A* 3qx7_A
3quq_A* 3r9k_A 3qut_A 3qu9_A* 3qu7_A 3qu5_A 3qyp_A
3quc_A 3qub_A 3qu4_A
Length = 243
Score = 30.3 bits (69), Expect = 0.84
Identities = 20/136 (14%), Positives = 48/136 (35%), Gaps = 21/136 (15%)
Query: 59 TLVTSEP---QVYKKVLSRLRKTPGGKHGATVLGAHVEGPFISPDKKGAHSLSKIVTFDK 115
L S P + + +V+ G + EG + GA +++ + +
Sbjct: 34 VLFNSMPYHSEAWHQVMKTH-----GLDLSREEAYMHEG------RTGASTINIVFQREL 82
Query: 116 GFDSVREVYGNLSN-----IAIITLAPELAGSMEVIDKLVEQGITVSLGHSSADINIAEE 170
G ++ +E ++ + A + G+ E++ K+ +G+T + + + E
Sbjct: 83 GKEATQEEIESIYHEKSILFNSYPEAERMPGAWELLQKVKSEGLTPMVV-TGSGQLSLLE 141
Query: 171 AVRHGASLITHLFNAM 186
+ H M
Sbjct: 142 RLEHNF-PGMFHKELM 156
>3dv9_A Beta-phosphoglucomutase; structural genomics, APC60149, PSI-
protein structure initiative, midwest center for
structural genomics, MCSG; HET: MSE; 1.72A {Bacteroides
vulgatus}
Length = 247
Score = 30.3 bits (69), Expect = 0.86
Identities = 23/136 (16%), Positives = 49/136 (36%), Gaps = 21/136 (15%)
Query: 59 TLVTSEP---QVYKKVLSRLRKTPGGKHGATVLGAHVEGPFISPDKKGAHSLSKIVTFDK 115
L S P + + K++ R G + EG + GA +++ + ++
Sbjct: 33 VLFDSMPNHAESWHKIMKRF-----GFGLSREEAYMHEG------RTGASTINIVSRRER 81
Query: 116 GFDSVREVYGNLSNIAI-----ITLAPELAGSMEVIDKLVEQGITVSLGHSSADINIAEE 170
G D+ E + A + G++EV+ K+ +G+T + + + +
Sbjct: 82 GHDATEEEIKAIYQAKTEEFNKCPKAERMPGALEVLTKIKSEGLTPMVV-TGSGQTSLLD 140
Query: 171 AVRHGASLITHLFNAM 186
+ H N M
Sbjct: 141 RLNHNF-PGIFQANLM 155
>3mdu_A N-formimino-L-glutamate iminohydrolase; amonohydralase family,
N-formimino-L-glutamate iminohydrolas
guanidino-L-glutamate; HET: NGQ; 1.40A {Pseudomonas
aeruginosa} PDB: 3mdw_A*
Length = 453
Score = 30.7 bits (70), Expect = 0.92
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 367 ALEVASLHPAKALGLEQHKGTLDFGADADFVILD 400
+ A A+ALG G+L G AD ++LD
Sbjct: 360 LYDAALAGGAQALGQPI--GSLAVGRRADLLVLD 391
>4f0l_A Amidohydrolase; ssgcid, structural genomics, seattle structural
genomics CEN infectious disease; 2.05A {Brucella
melitensis biovar abortus}
Length = 458
Score = 30.3 bits (69), Expect = 1.2
Identities = 17/65 (26%), Positives = 24/65 (36%), Gaps = 21/65 (32%)
Query: 367 ALEVASLHPAKALGLEQHKGTLDFGADADFVILD-EGLH-----------VYS------- 407
+ A L A+G + L GA ADFV LD E L +++
Sbjct: 368 LFDGAVLGGNIAMGRPE--DGLKKGASADFVSLDVERLPHAKGDVVLDGWIFAGRAHVCD 425
Query: 408 TWIAG 412
W+ G
Sbjct: 426 VWVRG 430
>1ejx_C Urease alpha subunit; alpha-beta barrel, nickel metalloenzyme,
temperature depende structural changes, hydrolase; HET:
KCX; 1.60A {Klebsiella aerogenes} SCOP: b.92.1.1 c.1.9.2
PDB: 1ejw_C* 1fwj_C* 1kra_C 2kau_C* 1ef2_A* 1ejv_C*
1ejt_C* 1eju_C* 1ejs_C* 1ejr_C* 1krc_C 1krb_C* 1fwi_C*
1fwa_C* 1fwb_C* 1fwc_C* 1fwd_C* 1fwe_C* 1fwg_C* 1a5k_C
...
Length = 567
Score = 30.4 bits (68), Expect = 1.2
Identities = 43/273 (15%), Positives = 85/273 (31%), Gaps = 34/273 (12%)
Query: 133 ITLAPELAGSMEVIDKLVEQGITVSLGHSSADINIAEEAVRHGASLITHLFNAMLPFHHR 192
+ + G++ D L EQ +G + A A A + + + H
Sbjct: 189 VNIGLLGKGNVSQPDALREQVAAGVIGLKIHEDWGATPAAIDCALTVADEMDIQVALHSD 248
Query: 193 DPGIIGLLSS---DNIDSSKVYYGIIADGVHTHPSALRIANSTHPEGHSSADIHIAEEAV 249
G + + + G P + H + +
Sbjct: 249 TLNESGFVEDTLAAIGGRTIHTFHTEGAGGGHAPDIITAC------AHPNILPSSTNPTL 302
Query: 250 RHGASLITHLFNAMLPFHHRDPGIIGLLSSDNIDSSKVYYGIIADGVHTHPSALRIANS- 308
+ + I + ++ HH DP I ++ +S I A+ V A + +S
Sbjct: 303 PYTLNTIDEHLDMLMVCHHLDPDIAEDVAFA--ESRIRRETIAAEDVLHDLGAFSLTSSD 360
Query: 309 THPEGSITP-FNGCVQF--FMRSTRCSLWFDLGNCNNGGSITPFNGCVQFFMRSTRCSLV 365
+ G + Q M+ R +L + G+ +N R R
Sbjct: 361 SQAMGRVGEVILRTWQVAHRMKVQRGALAEETGDNDN--------------FRVKRY--- 403
Query: 366 HALEVASLHPAKALGLEQHKGTLDFGADADFVI 398
+ +++PA G+ G+++ G AD V+
Sbjct: 404 --IAKYTINPALTHGIAHEVGSIEVGKLADLVV 434
>3be7_A Zn-dependent arginine carboxypeptidase; unknown source,
amidohydrolase, sargasso SEA, structural GEN protein
structure initiative, PSI; HET: ARG; 2.30A
{Unidentified} SCOP: b.92.1.9 c.1.9.18 PDB: 3dug_A*
Length = 408
Score = 30.0 bits (68), Expect = 1.4
Identities = 10/34 (29%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 367 ALEVASLHPAKALGLEQHKGTLDFGADADFVILD 400
A++ +++ A G+E G + G DAD V +
Sbjct: 343 AIQASTIKTATLFGIEN-IGQIKEGFDADIVGVI 375
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical
protein, structural genomics, functional assignment;
HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP:
c.26.2.4
Length = 162
Score = 28.1 bits (63), Expect = 3.6
Identities = 16/106 (15%), Positives = 30/106 (28%), Gaps = 13/106 (12%)
Query: 82 KHGATVLGAHV-EGPFISPDKKGAHSLSKIVTFDKGFDSVREVYGNLSNIAIITLAPELA 140
V+ HV + I + L + E+ L+ A +
Sbjct: 31 LKAEEVILLHVIDEREIKKRDIFSLLLGVAGLNKSVEEFENELKNKLTEEAKNKME---- 86
Query: 141 GSMEVIDKLVEQGITVS--LGHSSADINIAEEAVRHGASLI---TH 181
+ +L + G V + I + A G +I +H
Sbjct: 87 ---NIKKELEDVGFKVKDIIVVGIPHEEIVKIAEDEGVDIIIMGSH 129
>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha,
nuclear localisation SIGN recognition, chloride
intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus}
PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I
1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A
1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ...
Length = 510
Score = 28.4 bits (63), Expect = 5.1
Identities = 22/113 (19%), Positives = 38/113 (33%), Gaps = 25/113 (22%)
Query: 117 FDSVREVYGNLSNIAIITLAPELAGSMEVIDKLVEQGITVSLGH--SSADINIAEEAVRH 174
F + +E ++N G++E I LV GI L + S+ D I ++
Sbjct: 372 FKTQKEAAWAITNYTS-------GGTVEQIVYLVHCGIIEPLMNLLSAKDTKI----IQV 420
Query: 175 GASLITHLFNAMLPFHHRDPG------------IIGLLSSDNIDSSKVYYGII 215
I+++F A + I L +N K +I
Sbjct: 421 ILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 473
>1eye_A DHPS 1, dihydropteroate synthase I; alpha-beta barrel, transferase;
HET: PMM; 1.70A {Mycobacterium tuberculosis H37RV} SCOP:
c.1.21.1
Length = 280
Score = 27.5 bits (62), Expect = 9.0
Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Query: 145 VIDKLVEQGITVSLGHSSADINIAEEAVRHGASLI 179
V+ +L QGITVS+ AD+ A A+++GA ++
Sbjct: 72 VVKELAAQGITVSIDTMRADV--ARAALQNGAQMV 104
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.138 0.418
Gapped
Lambda K H
0.267 0.0538 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,787,282
Number of extensions: 432215
Number of successful extensions: 1320
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1265
Number of HSP's successfully gapped: 133
Length of query: 417
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 321
Effective length of database: 4,021,377
Effective search space: 1290862017
Effective search space used: 1290862017
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.6 bits)