RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12256
(417 letters)
>d1yrra2 c.1.9.10 (A:54-350) N-acetylglucosamine-6-phosphate
deacetylase, NagA, catalytic domain {Escherichia coli
[TaxId: 562]}
Length = 297
Score = 109 bits (272), Expect = 9e-28
Identities = 91/372 (24%), Positives = 148/372 (39%), Gaps = 76/372 (20%)
Query: 16 GFIDIQINGGFGVDFSHDIDSVDKN-VSIVARGILAHGVTSFCPTLVTSEPQVYKKVLSR 74
GFID+Q+NG GV F+ ++V + I+ + G T++ PTL+T+ ++ K+ +
Sbjct: 1 GFIDVQLNGCGGVQFNDTAEAVSVETLEIMQKANEKSGCTNYLPTLITTSDELMKQGVRV 60
Query: 75 LRKTPGGKHGATVLGAHVEGPFISPDKKGAHSLSKIVTFDKGFDSVREVYGNLSNIAIIT 134
+R+ KH LG H+EGP+++ KKG H+ + + D V + N I +T
Sbjct: 61 MREY-LAKHPNQALGLHLEGPWLNLVKKGTHNPNFVRKPDAAL--VDFLCENADVITKVT 117
Query: 135 LAPELAGSMEVIDKLVEQGITVSLGHSSADINIAEEAVRHGASLITHLFNAMLPFHHRDP 194
LAPE+ EVI KL GI VS GHS+A + A+ R G + THL+NAM R+P
Sbjct: 118 LAPEMVP-AEVISKLANAGIVVSAGHSNATLKEAKAGFRAGITFATHLYNAMPYITGREP 176
Query: 195 GIIGLLSSDNIDSSKVYYGIIADGVHTHPSALRIANSTHPEGHSSADIHIAEEAVRHGAS 254
G+ G + +D + +Y GIIADG+H + +R A + +
Sbjct: 177 GLAGAI----LDEADIYCGIIADGLHVDYANIRNAKRLKGDKLCLVTDA-------TAPA 225
Query: 255 LITHLFNAMLPFHHRDPGIIGLLSSDNIDSSKVYYGIIADGVHTHPSALRIANSTHPEGS 314
+ + + GS
Sbjct: 226 GANIEQFIFAGKTIYYRNGLCVDENG-----------------------------TLSGS 256
Query: 315 ITPFNGCVQFFMRSTRCSLWFDLGNCNNGGSITPFNGCVQFFMRSTRCSLVHALEVASLH 374
V+ + +L L +A+L+
Sbjct: 257 SLTMIEGVRNLVEHCGIALD-------------------------------EVLRMATLY 285
Query: 375 PAKALGLEQHKG 386
PA+A+G+E+ G
Sbjct: 286 PARAIGVEKRLG 297
>d1o12a2 c.1.9.10 (A:44-331) N-acetylglucosamine-6-phosphate
deacetylase, NagA, catalytic domain {Thermotoga maritima
[TaxId: 2336]}
Length = 288
Score = 106 bits (265), Expect = 6e-27
Identities = 84/371 (22%), Positives = 134/371 (36%), Gaps = 83/371 (22%)
Query: 16 GFIDIQINGGFGVDFSHDIDSVDKNVSIVARGILAHGVTSFCPTLVTSEPQVYKKVLSRL 75
GF+D I+G G D + + S + + + GVT+F T V++ + K++L +
Sbjct: 1 GFVDPHIHGVVGADTM------NCDFSEMEEFLYSQGVTTFLATTVSTSLEKMKEILRKA 54
Query: 76 RKTPGGKHGATVLGAHVEGPFISPDKKGAHSLSKIVTFDKGFDSVREVYGNLSNIAIITL 135
R ++LG H+EGP+IS +KKGAHS I RE+ S ++T
Sbjct: 55 RDYILENPSTSLLGVHLEGPYISKEKKGAHSEKHIRPPS-----ERELSEIDSPAKMLTF 109
Query: 136 APELAGSMEVIDKLVEQGITVSLGHSSADINIAEEAVRHGASLITHLFNAMLPFHHRDPG 195
APE+ S ++ LV++ I +S GHS A + + G ITH N + P HHR+ G
Sbjct: 110 APEIESSELLLR-LVKRDIVLSAGHSIATFEEFMKFYKEGVKRITHFPNGLKPLHHREIG 168
Query: 196 IIGLLSSDNIDSSKVYYGIIADGVHTHPSALRIANSTHPEGHSSADIHIAEEAVRHGASL 255
I G + V +I DGVH +++ +
Sbjct: 169 ITGAG----LLLDDVKLELICDGVHLSREMVKLVYKVKKANGIVLV---------TDSIS 215
Query: 256 ITHLFNAMLPFHHRDPGIIGLLSSDNIDSSKVYYGIIADGVHTHPSALRIANSTHPEGSI 315
L + V R+ + T GS
Sbjct: 216 AAGLKDGTTTLGDLV-------------------------VKVKDGVPRLEDGT-LAGST 249
Query: 316 TPFNGCVQFFMRSTRCSLWFDLGNCNNGGSITPFNGCVQFFMRSTRCSLVHALEVASLHP 375
F+ V+ F + T CS+ +V+S +
Sbjct: 250 LFFSQAVKNFRKFTGCSIT-------------------------------ELAKVSSYNS 278
Query: 376 AKALGLEQHKG 386
LGL+ +G
Sbjct: 279 CVELGLD-DRG 288
>d2vhla2 c.1.9.10 (A:58-358) N-acetylglucosamine-6-phosphate
deacetylase, NagA, catalytic domain {Bacillus subtilis
[TaxId: 1423]}
Length = 301
Score = 100 bits (248), Expect = 2e-24
Identities = 94/375 (25%), Positives = 138/375 (36%), Gaps = 78/375 (20%)
Query: 16 GFIDIQINGGFGVDFSHDIDSVDKNVSIVARGILAHGVTSFCPTLVTSEPQVYKKVLSRL 75
G IDI I+GG+G D D+ + I++ + G TSF T +T E + L
Sbjct: 1 GMIDIHIHGGYGADTM---DASFSTLDIMSSRLPEEGTTSFLATTITQEHGNISQALVNA 57
Query: 76 RKTPGGKHGA----TVLGAHVEGPFISPDKKGAHSLSKIVTFDKGFDSVREVYGNLSNIA 131
R+ + + +LG H+EGPF+SP + GA I D + I
Sbjct: 58 REWKAAEESSLLGAELLGIHLEGPFVSPKRAGAQPKEWIRPSDVELFKKWQQEAG-GLIK 116
Query: 132 IITLAPELAGSMEVIDKLVEQGITVSLGHSSADINIAEEAVRHGASLITHLFNAMLPFHH 191
I+TLAPE E+I L ++ I S+GH+ AD + +A + GAS +THL+NAM PFHH
Sbjct: 117 IVTLAPEEDQHFELIRHLKDESIIASMGHTDADSALLSDAAKAGASHMTHLYNAMSPFHH 176
Query: 192 RDPGIIGLLSSDNIDSSKVYYGIIADGVHTHPSALRIANSTHPEGHSSADIHIAEEAVRH 251
R+PG+I + +IADG+H+HP A ++
Sbjct: 177 REPGVI----GTALAHDGFVTELIADGIHSHPLAAKL----------------------- 209
Query: 252 GASLITHLFNAMLPFHHRDPGIIGLLSSDNIDSSKVYYGIIADGVHTHPSALRIANSTHP 311
I+ S Y V +++ T
Sbjct: 210 -----------AFLAKGSSKLILITDSMRAKGLKDGVYEFGGQSVTVRGRTALLSDGTLA 258
Query: 312 EGSITPFNGCVQFFMRSTRCSLWFDLGNCNNGGSITPFNGCVQFFMRSTRCSLVHALEVA 371
GSI N + T C S +
Sbjct: 259 -GSILKMNEGARHMREFTNC-------------------------------SWTDIANIT 286
Query: 372 SLHPAKALGLEQHKG 386
S + AK LG+ KG
Sbjct: 287 SENAAKQLGIFDRKG 301
>d1onwa2 c.1.9.13 (A:63-346) Isoaspartyl dipeptidase, catalytic
domain {Escherichia coli [TaxId: 562]}
Length = 284
Score = 53.6 bits (127), Expect = 1e-08
Identities = 21/215 (9%), Positives = 50/215 (23%), Gaps = 5/215 (2%)
Query: 16 GFIDIQINGGFGVDFSHDIDSVDKNVSIVARGILAHGVTSFCPTLVTSEPQVYKKVLSRL 75
GFID ++ G + + + + GVTS L T + + L
Sbjct: 1 GFIDQHVHLIGGGGEA---GPTTRTPEVALSRLTEAGVTSVVGLLGTDSISRHPESLLAK 57
Query: 76 RKTPGGKHGATVLGAHVEGPFISPDKKGAHSLSKIVTFDKGFDSVREVYGNLSNIAIITL 135
+ + + + I+ G + + +
Sbjct: 58 TRALNEEGISAWMLTGAYHVPSRTITGSVEKDVAIIDRVIGVKCAISDHRSAAPDVYHLA 117
Query: 136 APELAGSMEVIDKLVEQGITVSLGHSSADINIAEEAVRHGASLITHLFNAMLPFHHRDPG 195
+ + +G S + + + + I+ L + +
Sbjct: 118 NMAAESRVGGLLGGKPGVTVFHMGDSKKALQPIYDLLENCDVPISKLLPTHVNRNVPLFE 177
Query: 196 IIGLLSSDNIDSSKVYYGIIADGVHTHPSALRIAN 230
+ + I + V R
Sbjct: 178 QALEFARK--GGTIDITSSIDEPVAPAEGIARAVQ 210
Score = 48.2 bits (113), Expect = 7e-07
Identities = 20/154 (12%), Positives = 38/154 (24%), Gaps = 7/154 (4%)
Query: 233 HPEGHSSADIHIAEEAVRHGASLITHLFNAMLPFHHRDPGIIGLLSSDNIDSSKVYYGII 292
G S + + + + I+ L + + + + I
Sbjct: 138 FHMGDSKKALQPIYDLLENCDVPISKLLPTHVNRNVPLFEQALEFARK--GGTIDITSSI 195
Query: 293 ADGVHTHPSALRIANSTHPEGSITPFNGCVQFFMRSTRCSLWFDLGNCNNGGSITPFNGC 352
+ V R + P +T + +G
Sbjct: 196 DEPVAPAEGIARAVQAGIPLARVTLSSDGNGSQPFFDDEGNLTHIG----VAGFETLLET 251
Query: 353 VQFFMRSTRCSLVHALEVASLHPAKALGLEQHKG 386
VQ ++ S+ AL + A L L KG
Sbjct: 252 VQVLVKDYDFSISDALRPLTSSVAGFLNLT-GKG 284
>d2icsa2 c.1.9.14 (A:55-321) Putative adenine deaminase EF0837
{Enterococcus faecalis [TaxId: 1351]}
Length = 267
Score = 43.0 bits (99), Expect = 3e-05
Identities = 29/250 (11%), Positives = 64/250 (25%), Gaps = 12/250 (4%)
Query: 16 GFIDIQINGGFGVDFSHDIDSVDKNVSIVARGILAHGVTSFCPTLVTSEPQV--YKKVLS 73
G+ID ++ + +D + GVT+ T + + +
Sbjct: 1 GWIDDHVHCFEKMALYYDY---------PDEIGVKKGVTTVIDAGTTGAENIHEFYDLAQ 51
Query: 74 RLRKTPGGKHGATVLGAHVEGPFISPDKKGAHSLSKIVTFDKGFDSVREVYGNLSNIAII 133
+ + G + G + K A + K + F + + +
Sbjct: 52 QAKTNVFGLVNISKWGIVAQDELADLSKVQASLVKKAIQELPDFVVGIKARMS-RTVIGD 110
Query: 134 TLAPELAGSMEVIDKLVEQGITVSLGHSSADINIAEEAVRHGASLITHLFNAMLPFHHRD 193
L + ++ + E + V +G + ++ + G L +
Sbjct: 111 NGITPLELAKQIQQENQEIPLMVHIGSAPPHLDEILALMEKGDVLTHCFNGKENGILDQA 170
Query: 194 PGIIGLLSSDNIDSSKVYYGIIADGVHTHPSALRIANSTHPEGHSSADIHIAEEAVRHGA 253
I + + V+ A S DI+I
Sbjct: 171 TDKIKDFAWQAYNKGVVFDIGHGTDSFNFHVAETALREGMKAASISTDIYIRNRENGPVY 230
Query: 254 SLITHLFNAM 263
L T +
Sbjct: 231 DLATTMEKLR 240
Score = 31.8 bits (70), Expect = 0.13
Identities = 16/167 (9%), Positives = 32/167 (19%), Gaps = 19/167 (11%)
Query: 220 HTHPSALRIANSTHPEGHSSADIHIAEEAVRHGASLITHLFNAMLPFHHRDPGIIGLLSS 279
+ G + + + G L + I +
Sbjct: 120 KQIQQENQEIPLMVHIGSAPPHLDEILALMEKGDVLTHCFNGKENGILDQATDKIKDFAW 179
Query: 280 DNIDSSKVYYGIIADGVHTHPSALRIANSTHPEGSITPFNGCVQFFMRSTRCSLWFDLGN 339
G++ D H S T + +
Sbjct: 180 QAY-----NKGVVFDIGHGTDSFNFHVAETALREGMKAASIST------------DIYIR 222
Query: 340 CNNGGSITPFNGCVQFFMRSTRCSLVHALEVASLHPAKALGLEQHKG 386
G + ++ +E + PA+ L KG
Sbjct: 223 NRENGPVYDLATTMEKLRVV-GYDWPEIIEKVTKAPAENFHLT-QKG 267
>d2bb0a1 b.92.1.10 (A:3-73,A:374-415) Imidazolonepropionase
{Bacillus subtilis [TaxId: 1423]}
Length = 113
Score = 38.1 bits (88), Expect = 2e-04
Identities = 13/86 (15%), Positives = 20/86 (23%), Gaps = 14/86 (16%)
Query: 343 GGSITPFNGCVQFFMRSTR---CSLVHALEVASLHPAKALGLEQHKGTLDFGADADFVIL 399
G S+ + + A + + TL G AD VI
Sbjct: 24 GKSMQDLHVIEDAVVGIHEQKIVFAGQKGAEAGYEADEIIDCSGRLVTLKAGRSADLVIW 83
Query: 400 DE-----------GLHVYSTWIAGDL 414
HV+ G +
Sbjct: 84 QAPNYMYIPYHYGVNHVHQVMKNGTI 109
>d1gkpa2 c.1.9.6 (A:55-389) D-hydantoinase {Thermus sp. [TaxId:
275]}
Length = 335
Score = 36.1 bits (82), Expect = 0.006
Identities = 30/221 (13%), Positives = 58/221 (26%), Gaps = 17/221 (7%)
Query: 183 FNAMLPFHHRDPGIIGLLSSDNIDSSKVYYGIIADGVHTHPSALRIANSTHPEGHSSADI 242
++ H + ++G L + K A A + A
Sbjct: 122 LGVIVTAHCENAELVGRLQQKLLSEGKTGPEWHEPSRPEAVEAEGTARFATFLETTGATG 181
Query: 243 HIAEEAVRHGASLITHLFNAMLPFHHRDPGIIGLLSSDNIDSSKVYYGIIADGVHTHPSA 302
++ + + +P + LL + G + +
Sbjct: 182 YVVHLSCKPALDAAMAAKARGVPIYIESVIPHFLLDKTYAE-----RGGVEAMKYIMSPP 236
Query: 303 LRIANSTHPEGSITP-FNGCVQF-------FMRSTRCSLWFDLGNCNNG--GSITPFNGC 352
LR + + + G + F + NG N
Sbjct: 237 LR--DKRNQKVLWDALAQGFIDTVGTDHCPFDTEQKLLGKEAFTAIPNGIPAIEDRVNLL 294
Query: 353 VQFFMRSTRCSLVHALEVASLHPAKALGLEQHKGTLDFGAD 393
+ + R + ++ AS AK GL KGT+ G+D
Sbjct: 295 YTYGVSRGRLDIHRFVDAASTKAAKLFGLFPRKGTIAVGSD 335
>d1ra0a2 c.1.9.5 (A:56-375) Cytosine deaminase catalytic domain
{Escherichia coli [TaxId: 562]}
Length = 320
Score = 34.5 bits (77), Expect = 0.020
Identities = 7/44 (15%), Positives = 15/44 (34%), Gaps = 2/44 (4%)
Query: 352 CVQFFMRSTRCSLVHALEVASLHPAKALGLEQHKGTLDFGADAD 395
+ + L + + H A+ L L+ + G A+
Sbjct: 279 GLHVCQLMGYGQINDGLNLITHHSARTLNLQ--DYGIAAGNSAN 320
>d2puza2 c.1.9.17 (A:80-380) Imidazolonepropionase {Agrobacterium
tumefaciens [TaxId: 358]}
Length = 301
Score = 32.2 bits (71), Expect = 0.10
Identities = 24/146 (16%), Positives = 40/146 (27%), Gaps = 7/146 (4%)
Query: 243 HIAEEAVRHGASLITHLFNAMLPFHHRDPGIIGLLSSDNIDSSKVYYGIIADGVHTHPSA 302
+ A + G + H LS+D+++ T
Sbjct: 162 RVFAAAQQRGLPVKLHAEQLSNLGGAELAASYNALSADHLEYLDETGAKALAKAGTVAVL 221
Query: 303 LRIANSTHPEGSITPFNGCVQFFMRSTRCSLWFDLG-NCNNGGSITPFNGCVQFFMRSTR 361
L A E + P +L D + S+ + R
Sbjct: 222 LPGAFYALREKQLPPVQ---ALRDAGAEIALATDCNPGTSPLTSL---LLTMNMGATLFR 275
Query: 362 CSLVHALEVASLHPAKALGLEQHKGT 387
++ L + + AKALGL GT
Sbjct: 276 MTVEECLTATTRNAAKALGLLAETGT 301
>d3be7a1 b.92.1.9 (A:3-56,A:360-400) Zn-dependent arginine
carboxypeptidase {Unidentified organism [TaxId: 32644]}
Length = 95
Score = 29.8 bits (67), Expect = 0.14
Identities = 7/40 (17%), Positives = 14/40 (35%), Gaps = 2/40 (5%)
Query: 364 LVHALEVASLHPAKALGLEQHK--GTLDFGADADFVILDE 401
+ + + A + + + G DAD V + E
Sbjct: 30 KIAEIGKINTKDATVISIPDLILIPQIKEGFDADIVGVIE 69
>d2i9ua1 b.92.1.4 (A:9-66,A:377-427) Guanine deaminase {Clostridium
acetobutylicum [TaxId: 1488]}
Length = 109
Score = 29.8 bits (67), Expect = 0.19
Identities = 3/25 (12%), Positives = 10/25 (40%)
Query: 376 AKALGLEQHKGTLDFGADADFVILD 400
+ + + G D D ++++
Sbjct: 47 NPIIDFRNNIIIFEEGYDFDALVIN 71
>d2p9ba2 c.1.9.17 (A:71-394) Uncharacterized protein BL1453
{Bifidobacterium longum [TaxId: 216816]}
Length = 324
Score = 31.2 bits (68), Expect = 0.21
Identities = 8/36 (22%), Positives = 15/36 (41%)
Query: 352 CVQFFMRSTRCSLVHALEVASLHPAKALGLEQHKGT 387
++ + S AL A+ A LG++ G+
Sbjct: 289 ELELLVAYAGFSPAEALHAATAVNASILGVDAETGS 324
>d1ooya1 c.124.1.3 (A:261-481) Succinate:CoA transferase, C-terminal
domain {Pig (Sus scrofa) [TaxId: 9823]}
Length = 221
Score = 30.1 bits (67), Expect = 0.33
Identities = 13/70 (18%), Positives = 24/70 (34%)
Query: 1 MADFRFDCGGKLIAPGFIDIQINGGFGVDFSHDIDSVDKNVSIVARGILAHGVTSFCPTL 60
+ F D +I G +++ + G V D+ + +V A + S T
Sbjct: 78 ASYFSSDESFAMIRGGHVNLTMLGAMQVSKYGDLANWMIPGKLVKGMGGAMDLVSSAKTK 137
Query: 61 VTSEPQVYKK 70
V + K
Sbjct: 138 VVVTMEHSAK 147
>d2bb0a2 c.1.9.17 (A:74-373) Imidazolonepropionase {Bacillus
subtilis [TaxId: 1423]}
Length = 300
Score = 29.9 bits (65), Expect = 0.57
Identities = 19/249 (7%), Positives = 58/249 (23%), Gaps = 5/249 (2%)
Query: 139 LAGSMEVIDKLVEQGITVSLGHSSADINIAEEAVRHGASLITHLFNAMLPFHHRDPGIIG 198
L + + +++ G T + S + E + L +
Sbjct: 55 LQKAHFHLQRMLSYGTTTAEVKSGYGLEKETEL--KQLRVAKKLHESQPVDLVSTFMGAH 112
Query: 199 LLSSDNIDSSKVYYGIIADGVHTHPSALRIANSTHPEGHSSADIHIAEEAVRHGASLITH 258
+ + + + + + + + + + ++ A
Sbjct: 113 AIPPEYQNDPDDFLDQMLSLLPEIKEQELASFADIFTETGVFTVSQSRRYLQKAAEAGFG 172
Query: 259 LFNAMLPFHH-RDPGIIGLLSSDNIDSSKVYYGIIADGVHTHPSALRIANSTHPEGSITP 317
L + G L + + D + + + T +
Sbjct: 173 LKIHADEIDPLGGAELAGKLKAVSADHLVGTSDEGIKKLAEAGTIAVLLPGTTFYLGKST 232
Query: 318 FNGCVQFFMRSTRCSLWFDLGNCNNGGSITPFNGCVQFFMRSTRCSLVHALEVASLHPAK 377
+ SL D ++ + + + +++ A
Sbjct: 233 YARARAMIDEGVCVSLATDFNPGSSPTENIQL--IMSIAALHLKMTAEEIWHAVTVNAAY 290
Query: 378 ALGLEQHKG 386
A+G + G
Sbjct: 291 AIGKGEEAG 299
>d2puza1 b.92.1.10 (A:17-79,A:381-420) Imidazolonepropionase
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 103
Score = 28.0 bits (62), Expect = 0.69
Identities = 10/58 (17%), Positives = 15/58 (25%), Gaps = 11/58 (18%)
Query: 366 HALEVASLHPAKALGLEQHKGTLDFGADADFVILD-----------EGLHVYSTWIAG 412
L + TL+ G ADF I D +++ G
Sbjct: 42 SDLPDDLSTADETTDCGGRWITLEAGKSADFAIWDIERPAELVYRIGFNPLHARIFKG 99
>d1nfga2 c.1.9.6 (A:52-381) D-hydantoinase {Burkholderia pickettii
[TaxId: 329]}
Length = 330
Score = 28.8 bits (63), Expect = 1.4
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 361 RCSLVHALEVASLHPAKALGLEQHKGT 387
R SL +E+ + PAK G+ KGT
Sbjct: 304 RISLTQFVELVATRPAKVFGMFPQKGT 330
>d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]}
Length = 269
Score = 28.4 bits (62), Expect = 1.5
Identities = 26/148 (17%), Positives = 44/148 (29%), Gaps = 4/148 (2%)
Query: 202 SDNIDSSKVYYGIIADGVHTHPS-ALRIANSTHPEGHSSADIHIAEEAVRHGASLITHLF 260
+ + S V ++ G+ THP +R S P S+ D + H A I L
Sbjct: 18 NRGLTGSGVKVAVLDTGISTHPDLNIRGGASFVPGEPSTQDGNGHG---THVAGTIAALN 74
Query: 261 NAMLPFHHRDPGIIGLLSSDNIDSSKVYYGIIADGVHTHPSALRIANSTHPEGSITPFNG 320
N++ + + S I + + +AN + S +
Sbjct: 75 NSIGVLGVAPSAELYAVKVLGASGSGSVSSIAQGLEWAGNNGMHVANLSLGSPSPSATLE 134
Query: 321 CVQFFMRSTRCSLWFDLGNCNNGGSITP 348
S + GN G P
Sbjct: 135 QAVNSATSRGVLVVAASGNSGAGSISYP 162
>d2icsa1 b.92.1.8 (A:4-54,A:322-371) Putative adenine deaminase
EF0837 {Enterococcus faecalis [TaxId: 1351]}
Length = 101
Score = 27.0 bits (60), Expect = 1.6
Identities = 11/34 (32%), Positives = 13/34 (38%), Gaps = 5/34 (14%)
Query: 367 ALEVASLHPAKALGLEQHKGTLDFGADADFVILD 400
A E L P + TL+ G DAD I
Sbjct: 37 AKETIHLEPGTYV-----SATLEIGKDADLTIFT 65
>d2ooda1 b.92.1.4 (A:3-72,A:398-467) Guanine deaminase
{Bradyrhizobium japonicum [TaxId: 375]}
Length = 140
Score = 27.6 bits (61), Expect = 1.7
Identities = 10/39 (25%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 363 SLVHALEVASLHP-AKALGLEQHKGTLDFGADADFVILD 400
+ ++A+ HP + ++ + G +ADFV LD
Sbjct: 45 AFGPYEKIAAAHPGVEITHIKDRIIVFEPGKEADFVALD 83
>d1ynya2 c.1.9.6 (A:53-384) D-hydantoinase {Bacillus sp. AR9 [TaxId:
301298]}
Length = 332
Score = 28.4 bits (62), Expect = 1.8
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 361 RCSLVHALEVASLHPAKALGLEQHKGT 387
R SL ++++S AK G+ KGT
Sbjct: 306 RISLNQFVDISSTKAAKLFGMFPRKGT 332
>d2q09a2 c.1.9.17 (A:66-366) Probable 4-imidazolone-5-propanoate
amidohydrolase GOS_1928421 {Environmental samples}
Length = 301
Score = 27.6 bits (59), Expect = 2.7
Identities = 8/35 (22%), Positives = 15/35 (42%)
Query: 352 CVQFFMRSTRCSLVHALEVASLHPAKALGLEQHKG 386
+ + V A+ + H A+ALG ++ G
Sbjct: 266 AMNMACTLFGLTPVEAMAGVTRHAARALGEQEQLG 300
>d1gkra2 c.1.9.6 (A:55-379) L-hydantoinase {Arthrobacter aurescens
[TaxId: 43663]}
Length = 325
Score = 27.7 bits (60), Expect = 3.0
Identities = 30/207 (14%), Positives = 54/207 (26%), Gaps = 6/207 (2%)
Query: 183 FNAMLPFHHRDPGIIGLLSSDNIDSSKVYYGIIADGVHTHPSALRIANSTHPEGHSSADI 242
+++ H + II L + I + + + +
Sbjct: 122 CGSVIVVHAENETIIQALQKQIKAAGGKDMAAYEASQPVFQENEAIQRALLLQKEAGCRL 181
Query: 243 HIAEEAVRHGASLITHLFNAMLPFH-HRDPGIIGLLSSDNIDSSKVYYGIIADGVHTHPS 301
+ + G LI + H P + + + D
Sbjct: 182 IVLHVSNPDGVELIHQAQSEGQDVHCESGPQYLNITTDDAERIGPYMKVAPPVRSAEMNI 241
Query: 302 ALRIANSTHPEGSITPFNGCVQFFMRSTRCSLWFDLGNCNNG--GSITPFNGCVQFFMRS 359
L ++ +G + W D+ NG G T + +
Sbjct: 242 RLWEQLENGLIDTLGSDHGG---HPVEDKEPGWKDVWKAGNGALGLETSLPMMLTNGVNK 298
Query: 360 TRCSLVHALEVASLHPAKALGLEQHKG 386
R SL +EV PAK G+ KG
Sbjct: 299 GRLSLERLVEVMCEKPAKLFGIYPQKG 325
>d2qs8a2 c.1.9.18 (A:64-373) Xaa-Pro dipeptidase {Alteromonas
macleodii [TaxId: 28108]}
Length = 310
Score = 27.3 bits (58), Expect = 3.7
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 363 SLVHALEVASLHPAKALGLEQHKG 386
+ A++ A++ AK L +E G
Sbjct: 287 PAMKAIQSATMETAKLLRIEDKLG 310
>d2fvka2 c.1.9.6 (A:57-440) Dihydropyrimidine amidohydrolase Pyd2
{Yeast (Saccharomyces kluyveri) [TaxId: 4934]}
Length = 384
Score = 27.3 bits (59), Expect = 3.7
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 357 MRSTRCSLVHALEVASLHPAKALGLEQHKGT 387
+R S++ +E+ +PAK G+ KG+
Sbjct: 354 LRGNLTSMMKLVEIQCTNPAKVYGMYPQKGS 384
>d2ftwa2 c.1.9.6 (A:60-393) Dihydropyrimidine amidohydrolase Pyd2
{Dictyostelium discoideum [TaxId: 44689]}
Length = 334
Score = 26.9 bits (58), Expect = 4.8
Identities = 4/33 (12%), Positives = 12/33 (36%)
Query: 354 QFFMRSTRCSLVHALEVASLHPAKALGLEQHKG 386
+ + + + + + S A+ + KG
Sbjct: 301 ENGVNTGKLTWCQFVRATSSERARIFNIYPRKG 333
>d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase
{Thermotoga maritima [TaxId: 2336]}
Length = 343
Score = 26.7 bits (57), Expect = 5.9
Identities = 9/58 (15%), Positives = 15/58 (25%), Gaps = 12/58 (20%)
Query: 128 SNIAIITLAPELAGSMEVIDKLVEQGITV------------SLGHSSADINIAEEAVR 173
+N+ I+ + I+ L G+ S DI A
Sbjct: 279 TNMVILRTDNLKVNAHGFIEALRNSGVLANAVSDTEIRLVTHKDVSRNDIEEALNIFE 336
>d2imra2 c.1.9.16 (A:91-398) Hypothetical protein DR0824
{Deinococcus radiodurans [TaxId: 1299]}
Length = 308
Score = 26.6 bits (57), Expect = 6.0
Identities = 22/256 (8%), Positives = 56/256 (21%), Gaps = 11/256 (4%)
Query: 133 ITLAPELAGSMEVIDKLVEQ---GITVSLGHSSADINIAEEAVRHGASLITHLFNAMLPF 189
++ + EV+D L+ + T+ + + A+E + + P
Sbjct: 54 AGGVGDIVWAPEVMDALLAREDLSGTLYFEVLNPFPDKADEVFAAARTHLERWRRLERPG 113
Query: 190 HHRDPGIIGLLSSDNIDSSKVYYGIIADGV--HTHPSALRIANSTHPEGHSSADIHIAEE 247
+ + + +G+ H + G +
Sbjct: 114 LRLGLSPHTPFTVSHRLMRLLSDYAAGEGLPLQIHVAEHPTELEMFRTGGGPLWDNRMPA 173
Query: 248 AVRHGASLITHLFNA--MLPFHHRDPGIIGLLSSDNIDSSKVYYGIIADGVHTHPSALRI 305
H + + + P + D +G+L++ V +
Sbjct: 174 LYPHTLAEVIGREPGPDLTPVRYLDE--LGVLAARPTLVHMVNVTPDDIARVARAGCAVV 231
Query: 306 ANSTHPEGSITPFNGCVQFFMRSTRCSLWFDLGNCNNGGSITPFNGCVQFFMRSTRCSLV 365
F +L D ++
Sbjct: 232 TCPRSNHHLECGTFDWPAFAAAGVEVALGTDSVASGETLNV--REEVTFARQLYPGLDPR 289
Query: 366 HALEVASLHPAKALGL 381
+ A + +G
Sbjct: 290 VLVRAAVKGGQRVVGG 305
>d2q09a1 b.92.1.10 (A:4-65,A:367-407) Probable
4-imidazolone-5-propanoate amidohydrolase GOS_1928421
{Environmental samples}
Length = 103
Score = 25.5 bits (56), Expect = 6.0
Identities = 8/32 (25%), Positives = 16/32 (50%)
Query: 369 EVASLHPAKALGLEQHKGTLDFGADADFVILD 400
++ +PA ++ TL G ADF++ +
Sbjct: 44 DLKGPYPAHWQDMKGKLVTLRVGMLADFLVWN 75
>d2ooda2 c.1.9.9 (A:73-397) Guanine deaminase {Bradyrhizobium
japonicum [TaxId: 375]}
Length = 325
Score = 26.4 bits (56), Expect = 7.0
Identities = 5/32 (15%), Positives = 10/32 (31%)
Query: 355 FFMRSTRCSLVHALEVASLHPAKALGLEQHKG 386
+ S +L A+ L ++ G
Sbjct: 293 AEAERNKLSPYRGFWSVTLGGAEGLYIDDKLG 324
>d2r8ca2 c.1.9.18 (A:58-368) Uncharacterized protein EAJ56179
{Unidentified organism [TaxId: 32644]}
Length = 311
Score = 26.2 bits (55), Expect = 8.1
Identities = 5/20 (25%), Positives = 11/20 (55%)
Query: 367 ALEVASLHPAKALGLEQHKG 386
+ A++ A+ LG++ G
Sbjct: 292 VIASATIVSAEVLGMQDKLG 311
>d1onwa1 b.92.1.7 (A:1-62,A:347-389) Isoaspartyl dipeptidase
{Escherichia coli [TaxId: 562]}
Length = 105
Score = 25.0 bits (54), Expect = 9.3
Identities = 3/23 (13%), Positives = 7/23 (30%)
Query: 2 ADFRFDCGGKLIAPGFIDIQING 24
D G+++ P +
Sbjct: 49 NCTVVDLSGQILCPEILPGNDAD 71
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.138 0.418
Gapped
Lambda K H
0.267 0.0319 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,606,373
Number of extensions: 76222
Number of successful extensions: 275
Number of sequences better than 10.0: 1
Number of HSP's gapped: 262
Number of HSP's successfully gapped: 47
Length of query: 417
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 329
Effective length of database: 1,199,356
Effective search space: 394588124
Effective search space used: 394588124
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.8 bits)