BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy12257
         (145 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2CB2|A Chain A, Sulfur Oxygenase Reductase From Acidianus Ambivalens
 pdb|2CB2|B Chain B, Sulfur Oxygenase Reductase From Acidianus Ambivalens
 pdb|2CB2|C Chain C, Sulfur Oxygenase Reductase From Acidianus Ambivalens
 pdb|2CB2|D Chain D, Sulfur Oxygenase Reductase From Acidianus Ambivalens
 pdb|2CB2|E Chain E, Sulfur Oxygenase Reductase From Acidianus Ambivalens
 pdb|2CB2|F Chain F, Sulfur Oxygenase Reductase From Acidianus Ambivalens
          Length = 318

 Score = 28.5 bits (62), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 9/20 (45%), Positives = 16/20 (80%)

Query: 54 YPVFMKYSNYIQLDLIPFGN 73
          +P F+ + N+IQ+ ++PFGN
Sbjct: 37 HPGFVGFQNHIQIGILPFGN 56


>pdb|2YAV|A Chain A, Zn Inhibited Sulfur Oxygenase Reductase
 pdb|2YAV|B Chain B, Zn Inhibited Sulfur Oxygenase Reductase
 pdb|2YAV|C Chain C, Zn Inhibited Sulfur Oxygenase Reductase
 pdb|2YAV|D Chain D, Zn Inhibited Sulfur Oxygenase Reductase
 pdb|2YAV|E Chain E, Zn Inhibited Sulfur Oxygenase Reductase
 pdb|2YAV|F Chain F, Zn Inhibited Sulfur Oxygenase Reductase
 pdb|2YAW|A Chain A, Hg Inhibited Sulfur Oxygenase Reductase
 pdb|2YAW|B Chain B, Hg Inhibited Sulfur Oxygenase Reductase
 pdb|2YAW|C Chain C, Hg Inhibited Sulfur Oxygenase Reductase
 pdb|2YAW|D Chain D, Hg Inhibited Sulfur Oxygenase Reductase
 pdb|2YAW|E Chain E, Hg Inhibited Sulfur Oxygenase Reductase
 pdb|2YAW|F Chain F, Hg Inhibited Sulfur Oxygenase Reductase
 pdb|2YAX|A Chain A, Iodoacetamide Inhibited Sulfur Oxygenase Reductase
 pdb|2YAX|D Chain D, Iodoacetamide Inhibited Sulfur Oxygenase Reductase
 pdb|2YAX|E Chain E, Iodoacetamide Inhibited Sulfur Oxygenase Reductase
          Length = 318

 Score = 28.5 bits (62), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 9/20 (45%), Positives = 16/20 (80%)

Query: 54 YPVFMKYSNYIQLDLIPFGN 73
          +P F+ + N+IQ+ ++PFGN
Sbjct: 37 HPGFVGFQNHIQIGILPFGN 56


>pdb|2YAX|B Chain B, Iodoacetamide Inhibited Sulfur Oxygenase Reductase
 pdb|2YAX|C Chain C, Iodoacetamide Inhibited Sulfur Oxygenase Reductase
 pdb|2YAX|F Chain F, Iodoacetamide Inhibited Sulfur Oxygenase Reductase
          Length = 318

 Score = 28.5 bits (62), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 9/20 (45%), Positives = 16/20 (80%)

Query: 54 YPVFMKYSNYIQLDLIPFGN 73
          +P F+ + N+IQ+ ++PFGN
Sbjct: 37 HPGFVGFQNHIQIGILPFGN 56


>pdb|2QK4|A Chain A, Human Glycinamide Ribonucleotide Synthetase
 pdb|2QK4|B Chain B, Human Glycinamide Ribonucleotide Synthetase
          Length = 452

 Score = 27.7 bits (60), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 10/19 (52%), Positives = 12/19 (63%)

Query: 77  TKNSDGTWEFKCQHGEPEC 95
           TKN     EF C+ G+PEC
Sbjct: 302 TKNGPKVLEFNCRFGDPEC 320


>pdb|3BYT|B Chain B, A Complex Between A Variant Of Staphylococcal Enterotoxin
           C3 And The Variable Domain Of The Murine T Cell Receptor
           Beta Chain 8.2
 pdb|3BYT|D Chain D, A Complex Between A Variant Of Staphylococcal Enterotoxin
           C3 And The Variable Domain Of The Murine T Cell Receptor
           Beta Chain 8.2
 pdb|3BYT|F Chain F, A Complex Between A Variant Of Staphylococcal Enterotoxin
           C3 And The Variable Domain Of The Murine T Cell Receptor
           Beta Chain 8.2
 pdb|3BYT|H Chain H, A Complex Between A Variant Of Staphylococcal Enterotoxin
           C3 And The Variable Domain Of The Murine T Cell Receptor
           Beta Chain 8.2
          Length = 239

 Score = 25.8 bits (55), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 5/61 (8%)

Query: 79  NSDGTWEFKCQHGEPECFGNLYLACATHLLQASRPKHLIRYYNCMASASSFSIEKDVKQV 138
           N   TW     HG+   +G +      H    +    L+R Y    +  SF ++ D K V
Sbjct: 100 NKASTW-----HGKTCMYGGITKHEGNHFDNGNLQNVLVRVYENKRNTISFEVQTDKKSV 154

Query: 139 T 139
           T
Sbjct: 155 T 155


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.135    0.422 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,210,430
Number of Sequences: 62578
Number of extensions: 159496
Number of successful extensions: 335
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 331
Number of HSP's gapped (non-prelim): 6
length of query: 145
length of database: 14,973,337
effective HSP length: 89
effective length of query: 56
effective length of database: 9,403,895
effective search space: 526618120
effective search space used: 526618120
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 47 (22.7 bits)