BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12257
(145 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A6QPN6|GILT_BOVIN Gamma-interferon-inducible lysosomal thiol reductase OS=Bos taurus
GN=IFI30 PE=2 SV=1
Length = 244
Score = 77.0 bits (188), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 46/70 (65%), Gaps = 1/70 (1%)
Query: 34 VALYMESLCPGCHQFIKHQLYPVFMKYSNYIQLDLIPFGNARHTKNSDGTWEFKCQHGEP 93
V+LY E+LCPGC +F+ +L+P ++ + + L+P+GNA+ +N G WEF CQHGE
Sbjct: 58 VSLYYEALCPGCREFLIRELFPTWLMVLEILNVTLVPYGNAQE-RNVSGKWEFTCQHGER 116
Query: 94 ECFGNLYLAC 103
EC N AC
Sbjct: 117 ECLLNKVEAC 126
>sp|O17861|YVRI_CAEEL GILT-like protein F37H8.5 OS=Caenorhabditis elegans GN=F37H8.5 PE=1
SV=1
Length = 277
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 51/84 (60%), Gaps = 5/84 (5%)
Query: 31 KAKVALYMESLCPGCHQFIKHQLYP-VFMKYSNYIQLDLIPFGNARHTKNSDGTWEFKCQ 89
K + + +E+LCP C F+ QLYP VF ++NY+ ++L+PFGNA+ + DGT KCQ
Sbjct: 75 KINITVLIEALCPDCQNFLTKQLYPIVFKNFANYVNIELVPFGNAKVLE--DGT--IKCQ 130
Query: 90 HGEPECFGNLYLACATHLLQASRP 113
HGE EC N + C +Q P
Sbjct: 131 HGEEECSINKFEGCFIDSMQDQSP 154
>sp|Q9ESY9|GILT_MOUSE Gamma-interferon-inducible lysosomal thiol reductase OS=Mus
musculus GN=Ifi30 PE=1 SV=3
Length = 248
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 32 AKVALYMESLCPGCHQFIKHQLYPVFMKYSNYIQLDLIPFGNARHTKNSDGTWEFKCQHG 91
+V+LY ESLC C F+ L+P ++ + + L+P+GNA+ +N GTWEF CQHG
Sbjct: 59 VRVSLYYESLCGACRYFLVRDLFPTWLMVMEIMNITLVPYGNAQE-RNVSGTWEFTCQHG 117
Query: 92 EPECFGNLYLAC 103
E EC N+ AC
Sbjct: 118 ELECRLNMVEAC 129
>sp|P13284|GILT_HUMAN Gamma-interferon-inducible lysosomal thiol reductase OS=Homo
sapiens GN=IFI30 PE=1 SV=3
Length = 250
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 32 AKVALYMESLCPGCHQFIKHQLYPVFMKYSNYIQLDLIPFGNARHTKNSDGTWEFKCQHG 91
V LY E+LC GC F+ +L+P ++ + + L+P+GNA+ +N G WEFKCQHG
Sbjct: 62 VNVTLYYEALCGGCRAFLIRELFPTWLLVMEILNVTLVPYGNAQE-QNVSGRWEFKCQHG 120
Query: 92 EPECFGNLYLACA 104
E EC N AC
Sbjct: 121 EEECKFNKVEACV 133
>sp|Q499T2|GILT_RAT Gamma-interferon-inducible lysosomal thiol reductase OS=Rattus
norvegicus GN=Ifi30 PE=2 SV=1
Length = 248
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 26 MLRIVKAKVALYMESLCPGCHQFIKHQLYPVFMKYSNYIQLDLIPFGNARHTKNSDGTWE 85
+L V+LY ESLC C F+ L+P ++ + + L+P+GNA+ +N GTWE
Sbjct: 53 LLSAPPVNVSLYYESLCGACRYFLVRNLFPTWLMVMEIMNITLVPYGNAQE-RNVSGTWE 111
Query: 86 FKCQHGEPECFGNLYLAC 103
F CQHGE EC N AC
Sbjct: 112 FTCQHGELECKLNKVEAC 129
>sp|B3SP85|GILT_PIG Gamma-interferon-inducible-lysosomal thiol reductase OS=Sus scrofa
GN=IFI30 PE=2 SV=1
Length = 246
Score = 70.1 bits (170), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 34 VALYMESLCPGCHQFIKHQLYPVFMKYSNYIQLDLIPFGNARHTKNSDGTWEFKCQHGEP 93
V LY ESLC GC F+ +L+P ++ + + L+P+GNA+ +N G WEF CQHGE
Sbjct: 60 VNLYYESLCNGCRYFLVRELFPTWLMVWEILNVTLVPYGNAQE-RNVSGRWEFTCQHGEQ 118
Query: 94 ECFGNLYLACATHLLQ 109
EC N AC L+
Sbjct: 119 ECKMNKVEACLLDKLE 134
>sp|P34276|YKJ2_CAEEL GILT-like protein C02D5.2 OS=Caenorhabditis elegans GN=C02D5.2 PE=3
SV=1
Length = 323
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 58/111 (52%), Gaps = 7/111 (6%)
Query: 32 AKVALYMESLCPGCHQFIKHQLYPVF--MKYSNYIQLDLIPFGNARHTKNSDGTWEFKCQ 89
K+ +YME+ CP +F + QL + + N I+L++IPFG AR T+ + +E +CQ
Sbjct: 139 VKLDVYMEAQCPDTSRFFRQQLKKAWDILGRLNRIELNVIPFGKARCTEKGND-FECQCQ 197
Query: 90 HGEPECFGNLYLACATHLLQASRPKHLIRYYNCMASASSFSIEKDVKQVTE 140
HG EC N + C + P + CM +S+++ +K VTE
Sbjct: 198 HGPTECQINQLMNCVID--RFGFPHRYLPGVLCM--QGKYSLDEAMKCVTE 244
>sp|Q4JAE2|HTPX1_SULAC Protease HtpX homolog 1 OS=Sulfolobus acidocaldarius (strain ATCC
33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770)
GN=htpX1 PE=3 SV=1
Length = 307
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 7/54 (12%)
Query: 15 YLLGKKVEEVS----MLRIVKAKVALYMESLCPGCHQFIKHQLYPVFMKYSNYI 64
YL+G+ EEV + IV+ K+A MES P FI ++ YP + NYI
Sbjct: 57 YLVGRNTEEVGPGDPLYEIVR-KIA--MESKVPTPRVFISYEEYPNAFAFGNYI 107
>sp|Q9P7Q7|MAK1_SCHPO Peroxide stress-activated histidine kinase mak1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=mak1 PE=3 SV=1
Length = 1639
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 33/82 (40%), Gaps = 17/82 (20%)
Query: 31 KAKVALYMESLCPGCHQFIKHQLYPVFMKYSNYIQLDLIPFGNARH----TKNSDGTWEF 86
K+ + Y E+L + I +F YSN + L+P RH T ++D T E
Sbjct: 527 KSNLVPYPENLIASIERLIPF----IFSSYSNSQSVPLLPCPTQRHLLFNTSSTDNTKEL 582
Query: 87 ---------KCQHGEPECFGNL 99
C H E EC G+
Sbjct: 583 SMSASSENSDCPHKEGECVGSF 604
>sp|E9PT87|MYLK3_RAT Myosin light chain kinase 3 OS=Rattus norvegicus GN=Mylk3 PE=1 SV=1
Length = 786
Score = 29.6 bits (65), Expect = 7.1, Method: Composition-based stats.
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 10/73 (13%)
Query: 29 IVKAKVALYMESLCPGCHQFIKHQLYPVFMKYSNYI-------QLDLIPFGNARHTKNSD 81
+ + V L+ +C G H +H + + +K N + Q+ +I FG AR K +
Sbjct: 575 LTELDVVLFTRQICEGVHYLHQHYILHLDLKPENILCVSQTGHQIKIIDFGLARRYKPRE 634
Query: 82 GTWEFKCQHGEPE 94
+ K G PE
Sbjct: 635 ---KLKVNFGTPE 644
>sp|Q5RDG7|MYLK3_PONAB Myosin light chain kinase 3 OS=Pongo abelii GN=MYLK3 PE=2 SV=3
Length = 819
Score = 29.6 bits (65), Expect = 7.1, Method: Composition-based stats.
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 10/73 (13%)
Query: 29 IVKAKVALYMESLCPGCHQFIKHQLYPVFMKYSNYI-------QLDLIPFGNARHTKNSD 81
+ + V L+ +C G H +H + + +K N + Q+ +I FG AR K +
Sbjct: 608 LTELDVVLFTRQICEGVHYLHQHYILHLDLKPENILCVNQTGHQIKIIDFGLARRYKPRE 667
Query: 82 GTWEFKCQHGEPE 94
+ K G PE
Sbjct: 668 ---KLKVNFGTPE 677
>sp|Q3UIZ8|MYLK3_MOUSE Myosin light chain kinase 3 OS=Mus musculus GN=Mylk3 PE=1 SV=1
Length = 795
Score = 29.6 bits (65), Expect = 7.1, Method: Composition-based stats.
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 10/73 (13%)
Query: 29 IVKAKVALYMESLCPGCHQFIKHQLYPVFMKYSNYI-------QLDLIPFGNARHTKNSD 81
+ + V L+ +C G H +H + + +K N + Q+ +I FG AR K +
Sbjct: 584 LTELDVVLFTRQICEGVHYLHQHYILHLDLKPENILCVSQTGHQIKIIDFGLARRYKPRE 643
Query: 82 GTWEFKCQHGEPE 94
+ K G PE
Sbjct: 644 ---KLKVNFGTPE 653
>sp|Q32MK0|MYLK3_HUMAN Myosin light chain kinase 3 OS=Homo sapiens GN=MYLK3 PE=2 SV=3
Length = 819
Score = 29.6 bits (65), Expect = 7.1, Method: Composition-based stats.
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 10/73 (13%)
Query: 29 IVKAKVALYMESLCPGCHQFIKHQLYPVFMKYSNYI-------QLDLIPFGNARHTKNSD 81
+ + V L+ +C G H +H + + +K N + Q+ +I FG AR K +
Sbjct: 608 LTELDVVLFTRQICEGVHYLHQHYILHLDLKPENILCVNQTGHQIKIIDFGLARRYKPRE 667
Query: 82 GTWEFKCQHGEPE 94
+ K G PE
Sbjct: 668 ---KLKVNFGTPE 677
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.135 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,718,408
Number of Sequences: 539616
Number of extensions: 1913571
Number of successful extensions: 4237
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 4219
Number of HSP's gapped (non-prelim): 18
length of query: 145
length of database: 191,569,459
effective HSP length: 106
effective length of query: 39
effective length of database: 134,370,163
effective search space: 5240436357
effective search space used: 5240436357
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 55 (25.8 bits)