Query psy12257
Match_columns 145
No_of_seqs 108 out of 357
Neff 5.6
Searched_HMMs 46136
Date Fri Aug 16 22:44:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12257.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12257hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03227 GILT: Gamma interfero 100.0 4.8E-41 1E-45 244.0 10.5 104 32-143 1-106 (108)
2 KOG3160|consensus 100.0 4.4E-37 9.5E-42 248.6 9.5 131 6-144 11-146 (220)
3 PF13462 Thioredoxin_4: Thiore 95.1 0.077 1.7E-06 38.8 5.9 44 27-71 9-54 (162)
4 cd03019 DsbA_DsbA DsbA family, 92.7 0.19 4.1E-06 37.4 4.1 44 29-73 14-57 (178)
5 cd03023 DsbA_Com1_like DsbA fa 92.6 0.31 6.6E-06 35.0 5.1 41 29-71 4-44 (154)
6 PF14595 Thioredoxin_9: Thiore 91.5 0.44 9.6E-06 35.5 4.9 44 27-72 38-81 (129)
7 cd02972 DsbA_family DsbA famil 89.5 0.62 1.3E-05 30.3 3.8 41 34-75 1-41 (98)
8 PRK11657 dsbG disulfide isomer 86.4 1.7 3.6E-05 35.7 5.2 43 28-73 115-157 (251)
9 PF13905 Thioredoxin_8: Thiore 85.6 3 6.5E-05 27.8 5.4 41 31-72 2-44 (95)
10 TIGR00411 redox_disulf_1 small 84.0 2.6 5.6E-05 27.2 4.4 29 32-61 1-29 (82)
11 cd03020 DsbA_DsbC_DsbG DsbA fa 83.0 2.5 5.4E-05 32.7 4.6 43 28-75 75-117 (197)
12 cd02973 TRX_GRX_like Thioredox 82.9 3.1 6.6E-05 26.2 4.3 17 32-48 1-17 (67)
13 KOG2501|consensus 81.1 1.2 2.6E-05 34.8 2.1 79 14-95 15-96 (157)
14 cd03026 AhpF_NTD_C TRX-GRX-lik 78.1 5.2 0.00011 27.6 4.5 41 28-70 10-50 (89)
15 PF01323 DSBA: DSBA-like thior 75.5 7.1 0.00015 29.2 5.0 39 33-73 1-39 (193)
16 TIGR02190 GlrX-dom Glutaredoxi 69.9 3.2 6.9E-05 27.6 1.7 21 29-49 5-25 (79)
17 cd02066 GRX_family Glutaredoxi 69.9 4 8.7E-05 25.0 2.1 17 33-49 1-17 (72)
18 cd02964 TryX_like_family Trypa 69.8 9.9 0.00021 27.2 4.4 40 30-70 17-57 (132)
19 TIGR02200 GlrX_actino Glutared 68.0 3.8 8.3E-05 26.0 1.7 16 33-48 1-16 (77)
20 cd02995 PDI_a_PDI_a'_C PDIa fa 66.5 17 0.00038 24.0 4.9 36 30-66 18-53 (104)
21 PF13743 Thioredoxin_5: Thiore 66.4 12 0.00025 28.9 4.4 105 36-145 2-116 (176)
22 KOG3425|consensus 66.3 11 0.00025 28.5 4.1 36 38-74 41-76 (128)
23 cd03024 DsbA_FrnE DsbA family, 66.3 11 0.00024 28.5 4.3 41 34-75 1-43 (201)
24 cd03025 DsbA_FrnE_like DsbA fa 66.2 8.6 0.00019 28.9 3.6 42 32-74 1-42 (193)
25 cd02949 TRX_NTR TRX domain, no 66.0 21 0.00045 24.1 5.2 35 27-62 10-44 (97)
26 cd03419 GRX_GRXh_1_2_like Glut 65.4 5.6 0.00012 25.7 2.2 17 33-49 1-17 (82)
27 PF13728 TraF: F plasmid trans 64.6 7.4 0.00016 31.3 3.1 38 30-72 120-157 (215)
28 cd03012 TlpA_like_DipZ_like Tl 64.6 19 0.00042 25.4 5.0 41 29-71 22-62 (126)
29 PRK10877 protein disulfide iso 63.6 19 0.00041 29.1 5.3 42 28-73 105-146 (232)
30 PF11287 DUF3088: Protein of u 62.5 3.7 8.1E-05 30.4 0.9 34 41-76 23-56 (112)
31 PF00462 Glutaredoxin: Glutare 61.3 7.7 0.00017 24.0 2.2 17 34-50 1-17 (60)
32 PRK13703 conjugal pilus assemb 61.3 7.3 0.00016 32.4 2.5 38 30-72 143-180 (248)
33 TIGR02180 GRX_euk Glutaredoxin 60.9 6.3 0.00014 25.4 1.8 16 34-49 1-16 (84)
34 cd03027 GRX_DEP Glutaredoxin ( 60.5 7.4 0.00016 25.1 2.0 17 33-49 2-18 (73)
35 cd03418 GRX_GRXb_1_3_like Glut 59.5 6.2 0.00014 25.2 1.5 17 33-49 1-17 (75)
36 PF00085 Thioredoxin: Thioredo 57.0 31 0.00068 22.6 4.7 33 29-62 16-48 (103)
37 PHA03050 glutaredoxin; Provisi 56.1 7.6 0.00016 27.9 1.6 17 33-49 14-30 (108)
38 TIGR02189 GlrX-like_plant Glut 56.1 7.6 0.00017 27.2 1.6 18 33-50 9-26 (99)
39 TIGR02196 GlrX_YruB Glutaredox 55.8 7 0.00015 24.1 1.2 15 34-48 2-16 (74)
40 cd03009 TryX_like_TryX_NRX Try 55.6 33 0.00071 24.2 4.9 41 30-71 18-59 (131)
41 PRK13728 conjugal transfer pro 55.1 24 0.00052 28.0 4.4 34 34-72 73-106 (181)
42 PRK11200 grxA glutaredoxin 1; 53.7 11 0.00023 25.1 2.0 17 33-49 2-18 (85)
43 cd02969 PRX_like1 Peroxiredoxi 53.6 31 0.00067 25.7 4.7 41 29-71 24-64 (171)
44 cd01659 TRX_superfamily Thiore 53.5 30 0.00065 19.1 3.7 35 34-70 1-35 (69)
45 TIGR02181 GRX_bact Glutaredoxi 52.7 8.6 0.00019 25.0 1.3 16 34-49 1-16 (79)
46 TIGR02739 TraF type-F conjugat 52.7 12 0.00027 31.1 2.6 38 30-72 150-187 (256)
47 TIGR01126 pdi_dom protein disu 52.7 33 0.00072 22.4 4.3 21 29-49 12-32 (102)
48 COG1651 DsbG Protein-disulfide 52.6 27 0.00057 27.6 4.4 41 30-71 84-125 (244)
49 cd02976 NrdH NrdH-redoxin (Nrd 52.3 11 0.00025 23.0 1.8 16 33-48 1-16 (73)
50 cd03008 TryX_like_RdCVF Trypar 52.1 38 0.00082 25.7 5.0 32 30-62 25-56 (146)
51 cd02950 TxlA TRX-like protein 49.7 44 0.00096 24.7 5.0 36 28-64 18-53 (142)
52 cd03029 GRX_hybridPRX5 Glutare 48.7 15 0.00032 23.5 2.0 17 33-49 2-18 (72)
53 PRK09381 trxA thioredoxin; Pro 47.7 58 0.0013 22.1 5.0 34 28-62 19-52 (109)
54 COG0695 GrxC Glutaredoxin and 47.7 12 0.00027 25.2 1.5 17 33-49 2-18 (80)
55 cd02961 PDI_a_family Protein D 47.6 63 0.0014 20.5 5.0 30 30-60 15-44 (101)
56 cd02970 PRX_like2 Peroxiredoxi 47.4 51 0.0011 23.2 4.8 41 30-72 24-64 (149)
57 TIGR02183 GRXA Glutaredoxin, G 46.8 13 0.00029 25.0 1.6 16 34-49 2-17 (86)
58 PF00578 AhpC-TSA: AhpC/TSA fa 46.2 45 0.00099 22.8 4.3 40 30-70 25-66 (124)
59 cd03002 PDI_a_MPD1_like PDI fa 44.9 62 0.0013 21.7 4.8 22 28-49 16-37 (109)
60 cd02968 SCO SCO (an acronym fo 44.8 53 0.0011 23.1 4.6 34 29-63 21-55 (142)
61 TIGR01068 thioredoxin thioredo 44.5 66 0.0014 20.8 4.8 33 28-61 12-44 (101)
62 PTZ00051 thioredoxin; Provisio 44.1 75 0.0016 20.9 5.0 31 28-59 16-46 (98)
63 cd02966 TlpA_like_family TlpA- 43.9 77 0.0017 20.4 5.0 31 30-61 19-49 (116)
64 PRK10638 glutaredoxin 3; Provi 43.6 23 0.00049 23.5 2.3 17 33-49 3-19 (83)
65 PRK03147 thiol-disulfide oxido 43.3 69 0.0015 23.4 5.2 32 30-62 61-92 (173)
66 TIGR02187 GlrX_arch Glutaredox 43.1 56 0.0012 25.6 4.8 21 28-48 131-151 (215)
67 cd03010 TlpA_like_DsbE TlpA-li 42.9 37 0.0008 23.7 3.5 20 30-49 25-44 (127)
68 cd03001 PDI_a_P5 PDIa family, 42.8 86 0.0019 20.6 5.2 22 28-49 16-37 (103)
69 PF08534 Redoxin: Redoxin; In 42.7 60 0.0013 23.1 4.7 40 29-69 27-68 (146)
70 cd02998 PDI_a_ERp38 PDIa famil 42.3 81 0.0018 20.6 5.0 23 27-49 15-37 (105)
71 cd03004 PDI_a_ERdj5_C PDIa fam 42.3 1E+02 0.0022 20.6 5.5 22 28-49 17-38 (104)
72 PRK15317 alkyl hydroperoxide r 41.7 51 0.0011 29.4 4.9 21 29-49 115-135 (517)
73 cd02992 PDI_a_QSOX PDIa family 41.3 1.1E+02 0.0024 21.5 5.8 23 28-50 17-39 (114)
74 cd02953 DsbDgamma DsbD gamma f 41.0 60 0.0013 21.8 4.2 23 28-50 9-31 (104)
75 TIGR01295 PedC_BrcD bacterioci 40.4 24 0.00052 25.6 2.2 22 28-49 21-42 (122)
76 KOG1752|consensus 40.3 18 0.00039 26.1 1.5 39 33-73 15-53 (104)
77 PTZ00256 glutathione peroxidas 40.1 65 0.0014 24.6 4.7 42 28-71 39-80 (183)
78 cd02948 TRX_NDPK TRX domain, T 40.0 1.1E+02 0.0024 20.7 5.5 33 28-61 15-47 (102)
79 PRK10996 thioredoxin 2; Provis 39.9 66 0.0014 23.5 4.6 34 28-62 50-83 (139)
80 TIGR02540 gpx7 putative glutat 39.4 64 0.0014 23.6 4.4 40 30-70 22-62 (153)
81 PF13098 Thioredoxin_2: Thiore 39.0 65 0.0014 21.8 4.2 26 29-55 4-29 (112)
82 cd02967 mauD Methylamine utili 38.9 84 0.0018 21.2 4.7 32 30-62 21-52 (114)
83 cd02993 PDI_a_APS_reductase PD 38.5 86 0.0019 21.5 4.8 22 28-49 19-40 (109)
84 PRK10329 glutaredoxin-like pro 38.4 26 0.00057 23.6 2.0 15 33-47 2-16 (81)
85 TIGR02738 TrbB type-F conjugat 37.8 40 0.00087 25.6 3.1 19 31-49 51-69 (153)
86 cd03022 DsbA_HCCA_Iso DsbA fam 37.8 59 0.0013 24.2 4.1 35 34-71 1-35 (192)
87 PF13192 Thioredoxin_3: Thiore 37.4 1.1E+02 0.0024 19.9 4.9 35 32-70 1-35 (76)
88 cd02999 PDI_a_ERp44_like PDIa 36.3 1.2E+02 0.0026 20.8 5.2 22 28-49 16-37 (100)
89 TIGR02194 GlrX_NrdH Glutaredox 35.5 23 0.00049 22.8 1.3 16 34-49 1-16 (72)
90 COG2761 FrnE Predicted dithiol 35.5 67 0.0015 26.5 4.3 112 28-145 2-153 (225)
91 cd02956 ybbN ybbN protein fami 35.3 1.3E+02 0.0028 19.7 5.1 22 28-49 10-31 (96)
92 TIGR02740 TraF-like TraF-like 33.7 49 0.0011 27.4 3.3 38 30-72 166-203 (271)
93 cd02997 PDI_a_PDIR PDIa family 33.6 74 0.0016 20.9 3.7 31 30-61 17-47 (104)
94 KOG2613|consensus 33.0 34 0.00073 31.1 2.3 20 41-60 139-158 (502)
95 cd03006 PDI_a_EFP1_N PDIa fami 32.9 1.8E+02 0.004 20.7 5.9 30 27-61 26-55 (113)
96 cd02951 SoxW SoxW family; SoxW 32.7 1.2E+02 0.0027 21.1 4.9 20 31-50 15-34 (125)
97 cd03040 GST_N_mPGES2 GST_N fam 32.6 32 0.00069 22.0 1.6 17 33-49 1-17 (77)
98 cd02957 Phd_like Phosducin (Ph 32.6 73 0.0016 22.1 3.6 18 31-48 25-42 (113)
99 COG4545 Glutaredoxin-related p 32.6 28 0.0006 24.5 1.4 16 35-50 5-20 (85)
100 TIGR03140 AhpF alkyl hydropero 31.9 98 0.0021 27.6 5.1 21 29-49 116-136 (515)
101 TIGR00385 dsbE periplasmic pro 30.0 71 0.0015 24.0 3.4 21 29-49 62-82 (173)
102 cd03003 PDI_a_ERdj5_N PDIa fam 29.8 1.7E+02 0.0037 19.4 5.2 20 29-48 17-36 (101)
103 cd02996 PDI_a_ERp44 PDIa famil 29.0 1.6E+02 0.0034 19.9 4.8 22 28-49 16-37 (108)
104 TIGR03399 RNA_3prim_cycl RNA 3 28.8 1.6E+02 0.0035 25.3 5.7 63 25-90 105-169 (326)
105 cd03011 TlpA_like_ScsD_MtbDsbE 27.8 1E+02 0.0022 21.1 3.7 29 30-59 20-48 (123)
106 cd03028 GRX_PICOT_like Glutare 27.4 42 0.00091 22.7 1.6 16 33-48 9-29 (90)
107 PF06110 DUF953: Eukaryotic pr 27.0 1.3E+02 0.0028 22.2 4.2 34 39-73 35-68 (119)
108 cd00340 GSH_Peroxidase Glutath 25.7 1.8E+02 0.0039 21.2 4.9 39 30-71 22-60 (152)
109 cd02994 PDI_a_TMX PDIa family, 25.6 79 0.0017 21.0 2.7 24 33-61 19-42 (101)
110 smart00594 UAS UAS domain. 25.0 75 0.0016 22.6 2.6 44 28-73 25-68 (122)
111 PRK15412 thiol:disulfide inter 24.9 1E+02 0.0022 23.5 3.5 22 29-50 67-88 (185)
112 TIGR01617 arsC_related transcr 24.8 54 0.0012 23.3 1.8 16 34-49 1-16 (117)
113 cd02965 HyaE HyaE family; HyaE 24.7 1.6E+02 0.0034 21.5 4.3 21 28-48 25-47 (111)
114 PRK13675 GTP cyclohydrolase; P 24.7 1.2E+02 0.0026 25.9 4.2 24 30-53 145-168 (308)
115 cd02962 TMX2 TMX2 family; comp 24.5 1.2E+02 0.0025 23.1 3.7 21 28-48 45-65 (152)
116 cd03037 GST_N_GRX2 GST_N famil 24.5 38 0.00083 21.3 0.9 14 35-48 2-15 (71)
117 cd02975 PfPDO_like_N Pyrococcu 24.1 1.7E+02 0.0036 20.6 4.3 19 30-48 21-40 (113)
118 TIGR02661 MauD methylamine deh 24.1 1.1E+02 0.0023 23.6 3.5 28 29-57 73-100 (189)
119 cd02954 DIM1 Dim1 family; Dim1 23.8 86 0.0019 22.9 2.8 28 28-60 12-39 (114)
120 cd00874 RNA_Cyclase_Class_II R 23.4 2.4E+02 0.0053 24.2 5.8 62 26-90 104-167 (326)
121 PHA02125 thioredoxin-like prot 23.3 68 0.0015 20.7 2.0 15 34-48 2-16 (75)
122 cd02987 Phd_like_Phd Phosducin 22.6 1.5E+02 0.0032 22.8 4.0 18 31-48 84-101 (175)
123 PLN02412 probable glutathione 22.6 1.6E+02 0.0034 22.1 4.1 32 30-62 29-60 (167)
124 cd03005 PDI_a_ERp46 PDIa famil 22.6 1.7E+02 0.0038 19.0 3.9 28 33-61 19-46 (102)
125 cd02989 Phd_like_TxnDC9 Phosdu 22.0 1.1E+02 0.0023 21.6 2.9 20 29-48 21-40 (113)
126 cd02984 TRX_PICOT TRX domain, 21.7 2.4E+02 0.0052 18.3 5.0 20 30-49 14-33 (97)
127 cd03000 PDI_a_TMX3 PDIa family 21.0 2.7E+02 0.0058 18.6 5.4 31 29-60 14-44 (104)
128 TIGR00365 monothiol glutaredox 20.8 68 0.0015 22.2 1.6 16 34-49 14-34 (97)
129 COG4665 FcbT2 TRAP-type mannit 20.1 65 0.0014 25.8 1.5 23 27-49 71-93 (182)
130 PRK10606 btuE putative glutath 20.0 2.1E+02 0.0046 22.3 4.5 39 30-71 25-63 (183)
No 1
>PF03227 GILT: Gamma interferon inducible lysosomal thiol reductase (GILT); InterPro: IPR004911 This family includes the two characterised human gamma-interferon-inducible lysosomal thiol reductase (GILT) sequences [, ]. It also contains several other eukaryotic putative proteins with similarity to GILT []. The aligned region contains three conserved cysteine residues. In addition, the two GILT sequences possess a C-X(2)-C motif that is shared by some of the other sequences in the family. This motif is thought to be associated with disulphide bond reduction.
Probab=100.00 E-value=4.8e-41 Score=244.04 Aligned_cols=104 Identities=40% Similarity=0.821 Sum_probs=92.2
Q ss_pred eEEEEEEEeCChhhHHHHHHhhHHHH--HhccCceeEEEEeeeeceeecCCCCCcceeeeCChhhhccChHhHHHhhhhc
Q psy12257 32 AKVALYMESLCPGCHQFIKHQLYPVF--MKYSNYIQLDLIPFGNARHTKNSDGTWEFKCQHGEPECFGNLYLACATHLLQ 109 (145)
Q Consensus 32 V~V~vyyESlCPd~~~Fi~~qL~P~~--~~l~d~idl~lvPfG~a~~~~~~~g~~~f~CQHG~~EC~gN~~~aCal~~~~ 109 (145)
|+|+||||||||||++||++||+|+| ++++++|||+|||||||+... +|. .|+|||||.||+||++|+|+++++
T Consensus 1 V~v~vyyESlCPd~~~fi~~~L~p~~~~~~~~~~~~l~lvP~G~a~~~~--~~~-~~~CqHG~~EC~gN~~q~C~l~~~- 76 (108)
T PF03227_consen 1 VNVEVYYESLCPDCRRFITNQLFPVWTYEKLSDIMNLTLVPFGNAKVSS--SGN-EFTCQHGPDECYGNKLQACALKHL- 76 (108)
T ss_pred CEEEEEEEecCHhHHHHHHHHHHHHHHHhhccceEEEEEEEEeccEEec--CCc-eeecCCcHHHHHcCHHHHhHHHhc-
Confidence 78999999999999999999999976 789999999999999999885 443 899999999999999999999999
Q ss_pred CCCccccceeeeeccccCCCCchhhHHHHhhhcC
Q psy12257 110 ASRPKHLIRYYNCMASASSFSIEKDVKQVTEMGR 143 (145)
Q Consensus 110 ~~~~~~~l~fI~Cm~~~~~~~~~~~~~~c~~~~~ 143 (145)
++...+|+||+||+++.+++.+.. |++..+
T Consensus 77 -~~~~~~~~~i~Cm~~~~~~~~~~~---Ca~~~~ 106 (108)
T PF03227_consen 77 -PDTNAALPFIACMESSQDFPKAIK---CAKKYG 106 (108)
T ss_pred -CChhhhcCEEEEEcCCCCCchhhh---hHHhcC
Confidence 577888999999999966543333 887765
No 2
>KOG3160|consensus
Probab=100.00 E-value=4.4e-37 Score=248.61 Aligned_cols=131 Identities=33% Similarity=0.560 Sum_probs=106.5
Q ss_pred cccccceeeeecccchh-h--hh-hhcCCeeEEEEEEEeCChhhHHHHHHhhHHHHHh-ccCceeEEEEeeeeceeecCC
Q psy12257 6 SDTGCQKFRYLLGKKVE-E--VS-MLRIVKAKVALYMESLCPGCHQFIKHQLYPVFMK-YSNYIQLDLIPFGNARHTKNS 80 (145)
Q Consensus 6 ~~~~~~~~~~l~~~~~~-~--~~-~~~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~-l~d~idl~lvPfG~a~~~~~~ 80 (145)
+-+.+..|++++..... . ++ ....+||+|+||||||||||++||++||+|+|.. +.+++||++||||||+...
T Consensus 11 ~~~~~~~F~c~~~~~~~~~~~~~~~~~~~~v~ItlyyEaLCPdc~~Fi~~qL~p~~~~~~~~~idl~lvPfGna~~~~-- 88 (220)
T KOG3160|consen 11 SLAILSFFVCLLLFSFLLGILVAKGSQAPKVNITLYYEALCPDCSKFIRNQLYPFFDNLLPSILDLTLVPFGNAQCRN-- 88 (220)
T ss_pred cchhhheeeecchHhhhhhheeeccccCCeeEEEEEEEecCccHHHHHHHHHHHHHhhcccceeEEEEEccCCceeec--
Confidence 45677888877654443 1 22 2345699999999999999999999999999987 7999999999999999985
Q ss_pred CCCcceeeeCChhhhccChHhHHHhhhhcCCCccccceeeeeccccCCCCchhhHHHHhhhcCC
Q psy12257 81 DGTWEFKCQHGEPECFGNLYLACATHLLQASRPKHLIRYYNCMASASSFSIEKDVKQVTEMGRV 144 (145)
Q Consensus 81 ~g~~~f~CQHG~~EC~gN~~~aCal~~~~~~~~~~~l~fI~Cm~~~~~~~~~~~~~~c~~~~~l 144 (145)
++ +.|+||||+.||.+|++|||+|+++ +++.++++||.||++.. .-..+.+|.+..|+
T Consensus 89 ~~-~~~~CqHG~~EC~lN~LqaCvI~~l--~~~~~~l~~i~C~~~~~---~~~~~~~C~~~~~~ 146 (220)
T KOG3160|consen 89 DG-GTFTCQHGEEECKLNKLQACVIDTL--PDQSDQLPFIRCIQGKQ---KLSEAEDCLEKYGL 146 (220)
T ss_pred Cc-eEEEecCCHHHHhhhHHHHHHHHhh--hchHhhhceehhhhccc---chhHHHHHHhhcCC
Confidence 43 8999999999999999999999999 68999999999999932 22223336665554
No 3
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=95.05 E-value=0.077 Score=38.84 Aligned_cols=44 Identities=20% Similarity=0.436 Sum_probs=35.7
Q ss_pred hcCCeeEEEEEEEeCChhhHHHHHHhhHHHHHhc--cCceeEEEEee
Q psy12257 27 LRIVKAKVALYMESLCPGCHQFIKHQLYPVFMKY--SNYIQLDLIPF 71 (145)
Q Consensus 27 ~~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~l--~d~idl~lvPf 71 (145)
.+..++.|.+|..=.||.|++|... |.++.+++ .+.+.+.++|+
T Consensus 9 ~~~a~~~v~~f~d~~Cp~C~~~~~~-~~~~~~~~i~~~~v~~~~~~~ 54 (162)
T PF13462_consen 9 NPDAPITVTEFFDFQCPHCAKFHEE-LEKLLKKYIDPGKVKFVFRPV 54 (162)
T ss_dssp -TTTSEEEEEEE-TTSHHHHHHHHH-HHHHHHHHTTTTTEEEEEEES
T ss_pred CCCCCeEEEEEECCCCHhHHHHHHH-HhhhhhhccCCCceEEEEEEc
Confidence 4556899999999999999999864 55888887 77899999987
No 4
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=92.65 E-value=0.19 Score=37.42 Aligned_cols=44 Identities=20% Similarity=0.307 Sum_probs=38.4
Q ss_pred CCeeEEEEEEEeCChhhHHHHHHhhHHHHHhccCceeEEEEeeee
Q psy12257 29 IVKAKVALYMESLCPGCHQFIKHQLYPVFMKYSNYIQLDLIPFGN 73 (145)
Q Consensus 29 ~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~l~d~idl~lvPfG~ 73 (145)
..+|.|..|+-=.||.|++|-. .+.+...+..+.+.|+++|+..
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~-~~~~~~~~~~~~v~~~~~~~~~ 57 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEP-ILEAWVKKLPKDVKFEKVPVVF 57 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhH-HHHHHHHhCCCCceEEEcCCcc
Confidence 5789999999999999999985 5788888888899999999763
No 5
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=92.63 E-value=0.31 Score=34.96 Aligned_cols=41 Identities=10% Similarity=0.284 Sum_probs=30.7
Q ss_pred CCeeEEEEEEEeCChhhHHHHHHhhHHHHHhccCceeEEEEee
Q psy12257 29 IVKAKVALYMESLCPGCHQFIKHQLYPVFMKYSNYIQLDLIPF 71 (145)
Q Consensus 29 ~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~l~d~idl~lvPf 71 (145)
..++.|.+|+--.||.|++|- .+|.+.+...++ +++.++||
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~-~~l~~~~~~~~~-~~~~~~~~ 44 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLA-PELEKLLKEDPD-VRVVFKEF 44 (154)
T ss_pred CCCEEEEEEECCCChhHHHhh-HHHHHHHHHCCC-ceEEEEeC
Confidence 468899999999999999996 356565555554 56666666
No 6
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=91.50 E-value=0.44 Score=35.45 Aligned_cols=44 Identities=14% Similarity=0.167 Sum_probs=24.9
Q ss_pred hcCCeeEEEEEEEeCChhhHHHHHHhhHHHHHhccCceeEEEEeee
Q psy12257 27 LRIVKAKVALYMESLCPGCHQFIKHQLYPVFMKYSNYIQLDLIPFG 72 (145)
Q Consensus 27 ~~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~l~d~idl~lvPfG 72 (145)
.-..++++.|+.|+-||||++++= .|..+.+ ....++++++.-.
T Consensus 38 ~~~~~~~ilvi~e~WCgD~~~~vP-~l~kiae-~~p~i~~~~i~rd 81 (129)
T PF14595_consen 38 SIQKPYNILVITETWCGDCARNVP-VLAKIAE-ANPNIEVRIILRD 81 (129)
T ss_dssp T--S-EEEEEE--TT-HHHHHHHH-HHHHHHH-H-TTEEEEEE-HH
T ss_pred hcCCCcEEEEEECCCchhHHHHHH-HHHHHHH-hCCCCeEEEEEec
Confidence 345788999999999999997762 2322222 3347788888764
No 7
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=89.49 E-value=0.62 Score=30.25 Aligned_cols=41 Identities=20% Similarity=0.402 Sum_probs=32.7
Q ss_pred EEEEEEeCChhhHHHHHHhhHHHHHhccCceeEEEEeeeece
Q psy12257 34 VALYMESLCPGCHQFIKHQLYPVFMKYSNYIQLDLIPFGNAR 75 (145)
Q Consensus 34 V~vyyESlCPd~~~Fi~~qL~P~~~~l~d~idl~lvPfG~a~ 75 (145)
|.+|+--.||.|..+.. +|.+......+.++++++|+.-..
T Consensus 1 i~~f~d~~Cp~C~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~ 41 (98)
T cd02972 1 IVEFFDPLCPYCYLFEP-ELEKLLYADDGGVRVVYRPFPLLG 41 (98)
T ss_pred CeEEECCCCHhHHhhhH-HHHHHHhhcCCcEEEEEeccccCC
Confidence 46788899999999874 677766667888999999987544
No 8
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=86.36 E-value=1.7 Score=35.69 Aligned_cols=43 Identities=28% Similarity=0.388 Sum_probs=33.2
Q ss_pred cCCeeEEEEEEEeCChhhHHHHHHhhHHHHHhccCceeEEEEeeee
Q psy12257 28 RIVKAKVALYMESLCPGCHQFIKHQLYPVFMKYSNYIQLDLIPFGN 73 (145)
Q Consensus 28 ~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~l~d~idl~lvPfG~ 73 (145)
...|..|.||.--.||+|++|-. ++.|..+. ..+.++++|++-
T Consensus 115 ~~ak~~I~vFtDp~CpyC~kl~~-~l~~~~~~--g~V~v~~ip~~~ 157 (251)
T PRK11657 115 ADAPRIVYVFADPNCPYCKQFWQ-QARPWVDS--GKVQLRHILVGI 157 (251)
T ss_pred CCCCeEEEEEECCCChhHHHHHH-HHHHHhhc--CceEEEEEeccc
Confidence 34678899999999999999986 46664433 348889999864
No 9
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=85.64 E-value=3 Score=27.84 Aligned_cols=41 Identities=20% Similarity=0.552 Sum_probs=31.3
Q ss_pred eeEEEEEEEeCChhhHHHHHHhhHHHHHhcc--CceeEEEEeee
Q psy12257 31 KAKVALYMESLCPGCHQFIKHQLYPVFMKYS--NYIQLDLIPFG 72 (145)
Q Consensus 31 kV~V~vyyESlCPd~~~Fi~~qL~P~~~~l~--d~idl~lvPfG 72 (145)
|+.+-.|+-+-||.|+.++. .|..++++++ +.++|-.|...
T Consensus 2 K~~ll~fwa~~c~~c~~~~~-~l~~l~~~~~~~~~v~~v~Vs~d 44 (95)
T PF13905_consen 2 KPVLLYFWASWCPPCKKELP-KLKELYKKYKKKDDVEFVFVSLD 44 (95)
T ss_dssp SEEEEEEE-TTSHHHHHHHH-HHHHHHHHHTTTTTEEEEEEE-S
T ss_pred CEEEEEEECCCCHHHHHHHH-HHHHHHHHhCCCCCEEEEEEEeC
Confidence 67788899999999999874 6778887777 66777766664
No 10
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=84.01 E-value=2.6 Score=27.22 Aligned_cols=29 Identities=21% Similarity=0.415 Sum_probs=20.2
Q ss_pred eEEEEEEEeCChhhHHHHHHhhHHHHHhcc
Q psy12257 32 AKVALYMESLCPGCHQFIKHQLYPVFMKYS 61 (145)
Q Consensus 32 V~V~vyyESlCPd~~~Fi~~qL~P~~~~l~ 61 (145)
|+|.+|+-+-||.|+.... .|..+...+.
T Consensus 1 ~~v~~f~~~~C~~C~~~~~-~l~~l~~~~~ 29 (82)
T TIGR00411 1 VKIELFTSPTCPYCPAAKR-VVEEVAKEMG 29 (82)
T ss_pred CEEEEEECCCCcchHHHHH-HHHHHHHHhc
Confidence 6899999999999997643 3443333333
No 11
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=82.96 E-value=2.5 Score=32.71 Aligned_cols=43 Identities=21% Similarity=0.390 Sum_probs=33.2
Q ss_pred cCCeeEEEEEEEeCChhhHHHHHHhhHHHHHhccCceeEEEEeeeece
Q psy12257 28 RIVKAKVALYMESLCPGCHQFIKHQLYPVFMKYSNYIQLDLIPFGNAR 75 (145)
Q Consensus 28 ~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~l~d~idl~lvPfG~a~ 75 (145)
...++.|.+|.--.||.|+++.. .|.+ ..+-+.|+++||....
T Consensus 75 ~~~~~~i~~f~D~~Cp~C~~~~~-~l~~----~~~~v~v~~~~~p~~~ 117 (197)
T cd03020 75 GNGKRVVYVFTDPDCPYCRKLEK-ELKP----NADGVTVRIFPVPILG 117 (197)
T ss_pred CCCCEEEEEEECCCCccHHHHHH-HHhh----ccCceEEEEEEcCcCC
Confidence 34689999999999999999875 4544 4566888888886443
No 12
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=82.88 E-value=3.1 Score=26.18 Aligned_cols=17 Identities=18% Similarity=0.704 Sum_probs=15.2
Q ss_pred eEEEEEEEeCChhhHHH
Q psy12257 32 AKVALYMESLCPGCHQF 48 (145)
Q Consensus 32 V~V~vyyESlCPd~~~F 48 (145)
|+|.+|+-+-||.|++.
T Consensus 1 ~~v~~f~~~~C~~C~~~ 17 (67)
T cd02973 1 VNIEVFVSPTCPYCPDA 17 (67)
T ss_pred CEEEEEECCCCCCcHHH
Confidence 68999999999999765
No 13
>KOG2501|consensus
Probab=81.07 E-value=1.2 Score=34.84 Aligned_cols=79 Identities=15% Similarity=0.172 Sum_probs=45.6
Q ss_pred eeecccchhh--hhhhcCCeeEEEEEEEeCChhhHHHHHHhhHHHHHhccCc-eeEEEEeeeeceeecCCCCCcceeeeC
Q psy12257 14 RYLLGKKVEE--VSMLRIVKAKVALYMESLCPGCHQFIKHQLYPVFMKYSNY-IQLDLIPFGNARHTKNSDGTWEFKCQH 90 (145)
Q Consensus 14 ~~l~~~~~~~--~~~~~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~l~d~-idl~lvPfG~a~~~~~~~g~~~f~CQH 90 (145)
+.|.+.+... ++..-..||-+-.|--.-||+||.|- -.|.++|+.+.+- -.|++|-...-+... +-...+.++|
T Consensus 15 ~~l~~~~~~~~~~~~~l~gKvV~lyFsA~wC~pCR~FT-P~Lk~fYe~l~~~~~~fEVvfVS~D~~~~--~~~~y~~~~~ 91 (157)
T KOG2501|consen 15 NRLRKQDGTEVLASEALQGKVVGLYFSAHWCPPCRDFT-PILKDFYEELKDNAAPFEVVFVSSDRDEE--SLDEYMLEHH 91 (157)
T ss_pred CeeeccCCccchHhHhhCCcEEEEEEEEEECCchhhCC-chHHHHHHHHHhcCCceEEEEEecCCCHH--HHHHHHHhcC
Confidence 3455544443 33234458777777788999999986 4788899887654 244444432211111 1123567778
Q ss_pred Chhhh
Q psy12257 91 GEPEC 95 (145)
Q Consensus 91 G~~EC 95 (145)
|+-=.
T Consensus 92 ~~W~~ 96 (157)
T KOG2501|consen 92 GDWLA 96 (157)
T ss_pred CCeEE
Confidence 76543
No 14
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=78.10 E-value=5.2 Score=27.57 Aligned_cols=41 Identities=15% Similarity=0.232 Sum_probs=26.6
Q ss_pred cCCeeEEEEEEEeCChhhHHHHHHhhHHHHHhccCceeEEEEe
Q psy12257 28 RIVKAKVALYMESLCPGCHQFIKHQLYPVFMKYSNYIQLDLIP 70 (145)
Q Consensus 28 ~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~l~d~idl~lvP 70 (145)
=..+|+|.+|+-.-||+|... .++..-+....+.+++..+=
T Consensus 10 l~~pv~i~~F~~~~C~~C~~~--~~~~~~l~~~~~~i~~~~vd 50 (89)
T cd03026 10 LNGPINFETYVSLSCHNCPDV--VQALNLMAVLNPNIEHEMID 50 (89)
T ss_pred cCCCEEEEEEECCCCCCcHHH--HHHHHHHHHHCCCceEEEEE
Confidence 347899999999999999954 34444333333345555544
No 15
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=75.54 E-value=7.1 Score=29.18 Aligned_cols=39 Identities=18% Similarity=0.535 Sum_probs=30.3
Q ss_pred EEEEEEEeCChhhHHHHHHhhHHHHHhccCceeEEEEeeee
Q psy12257 33 KVALYMESLCPGCHQFIKHQLYPVFMKYSNYIQLDLIPFGN 73 (145)
Q Consensus 33 ~V~vyyESlCPd~~~Fi~~qL~P~~~~l~d~idl~lvPfG~ 73 (145)
+|++|+--.||.|-.+.. .|..+-....+ ++|++.||.-
T Consensus 1 ~i~~~~D~~Cp~cy~~~~-~l~~l~~~~~~-~~i~~~p~~l 39 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASP-RLRKLRAEYPD-VEIEWRPFPL 39 (193)
T ss_dssp EEEEEEBTTBHHHHHHHH-HHHHHHHHHTT-CEEEEEEESS
T ss_pred CEEEEEeCCCHHHHHHHH-HHHHHHHHhcC-CcEEEecccc
Confidence 589999999999998875 45555555544 9999999974
No 16
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=69.94 E-value=3.2 Score=27.55 Aligned_cols=21 Identities=19% Similarity=0.384 Sum_probs=16.8
Q ss_pred CCeeEEEEEEEeCChhhHHHH
Q psy12257 29 IVKAKVALYMESLCPGCHQFI 49 (145)
Q Consensus 29 ~~kV~V~vyyESlCPd~~~Fi 49 (145)
..+-+|+||.-+-||.|++-.
T Consensus 5 ~~~~~V~ly~~~~Cp~C~~ak 25 (79)
T TIGR02190 5 RKPESVVVFTKPGCPFCAKAK 25 (79)
T ss_pred CCCCCEEEEECCCCHhHHHHH
Confidence 344568899999999999754
No 17
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=69.89 E-value=4 Score=24.98 Aligned_cols=17 Identities=35% Similarity=0.757 Sum_probs=14.4
Q ss_pred EEEEEEEeCChhhHHHH
Q psy12257 33 KVALYMESLCPGCHQFI 49 (145)
Q Consensus 33 ~V~vyyESlCPd~~~Fi 49 (145)
+|.+|....||+|++..
T Consensus 1 ~v~ly~~~~Cp~C~~~~ 17 (72)
T cd02066 1 KVVVFSKSTCPYCKRAK 17 (72)
T ss_pred CEEEEECCCCHHHHHHH
Confidence 37899999999999764
No 18
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=69.82 E-value=9.9 Score=27.24 Aligned_cols=40 Identities=20% Similarity=0.407 Sum_probs=28.0
Q ss_pred CeeEEEEEEEeCChhhHHHHHHhhHHHHHhccCc-eeEEEEe
Q psy12257 30 VKAKVALYMESLCPGCHQFIKHQLYPVFMKYSNY-IQLDLIP 70 (145)
Q Consensus 30 ~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~l~d~-idl~lvP 70 (145)
.|+-|-.|+-+-||.|+..+. .|..+++++++. -+++++.
T Consensus 17 Gk~vll~F~atwC~~C~~~~p-~l~~l~~~~~~~~~~v~vi~ 57 (132)
T cd02964 17 GKTVGLYFSASWCPPCRAFTP-KLVEFYEKLKEEGKNFEIVF 57 (132)
T ss_pred CCEEEEEEECCCCchHHHHHH-HHHHHHHHHhhcCCCeEEEE
Confidence 578888888999999999764 466666666543 3444443
No 19
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=67.95 E-value=3.8 Score=25.97 Aligned_cols=16 Identities=25% Similarity=0.665 Sum_probs=14.0
Q ss_pred EEEEEEEeCChhhHHH
Q psy12257 33 KVALYMESLCPGCHQF 48 (145)
Q Consensus 33 ~V~vyyESlCPd~~~F 48 (145)
+|.||+-+.||+|++.
T Consensus 1 ~v~ly~~~~C~~C~~~ 16 (77)
T TIGR02200 1 TITVYGTTWCGYCAQL 16 (77)
T ss_pred CEEEEECCCChhHHHH
Confidence 3789999999999974
No 20
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=66.50 E-value=17 Score=24.01 Aligned_cols=36 Identities=11% Similarity=0.141 Sum_probs=23.6
Q ss_pred CeeEEEEEEEeCChhhHHHHHHhhHHHHHhccCceeE
Q psy12257 30 VKAKVALYMESLCPGCHQFIKHQLYPVFMKYSNYIQL 66 (145)
Q Consensus 30 ~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~l~d~idl 66 (145)
.+.-+-.||-+-|+.|+++.. ++..+...+.+..++
T Consensus 18 ~~~~~v~f~~~~C~~C~~~~~-~~~~~~~~~~~~~~~ 53 (104)
T cd02995 18 DKDVLVEFYAPWCGHCKALAP-IYEELAEKLKGDDNV 53 (104)
T ss_pred CCcEEEEEECCCCHHHHHHhh-HHHHHHHHhcCCCCE
Confidence 466677899999999998753 454444455543333
No 21
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=66.39 E-value=12 Score=28.91 Aligned_cols=105 Identities=23% Similarity=0.291 Sum_probs=52.2
Q ss_pred EEEEeCChhhHHHHHHhhHHHHHhccCceeEEEEeeeeceeecCCCCCcceeeeCChh--hhccChHhHHH---hhhhcC
Q psy12257 36 LYMESLCPGCHQFIKHQLYPVFMKYSNYIQLDLIPFGNARHTKNSDGTWEFKCQHGEP--ECFGNLYLACA---THLLQA 110 (145)
Q Consensus 36 vyyESlCPd~~~Fi~~qL~P~~~~l~d~idl~lvPfG~a~~~~~~~g~~~f~CQHG~~--EC~gN~~~aCa---l~~~~~ 110 (145)
+|.--+|+.|-.+-. .|..+...+...+++++||.|++..... -.....+.+..- +=......+|. ...++
T Consensus 2 ~F~dPlc~~C~~~E~-~l~kl~~~~~~~i~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~y~a~la~kAA~~q- 77 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEP-ELRKLKEEYGNKIEFRFIPGGLMPDIND--FMPRMPINGDFWRNEPRSSSYPACLAYKAAQLQ- 77 (176)
T ss_dssp EEE-TT-HHHHHHHH-HHHHHHHHS-TTEEEEEEE--SS-S--S--B--H----TTHHHS--BS--HHHHHHHHHHHTT-
T ss_pred eeeCCCChHHHHhHH-HHHHHHHHcCCcEEEEEEEccchHHHHH--HHHhcCCCHHHhcCCCCCCchHHHHHHHHHHHh-
Confidence 466779999987753 4666667789999999999999865531 111112222211 12244555662 11121
Q ss_pred CCccccceeeeeccccC-----CCCchhhHHHHhhhcCCC
Q psy12257 111 SRPKHLIRYYNCMASAS-----SFSIEKDVKQVTEMGRVS 145 (145)
Q Consensus 111 ~~~~~~l~fI~Cm~~~~-----~~~~~~~~~~c~~~~~l~ 145 (145)
..+++..|+.-|.... ++..+.-+.++|+..||.
T Consensus 78 -g~k~~~~fL~~lQ~a~~~~~~~~s~~~~l~~iA~~~gLD 116 (176)
T PF13743_consen 78 -GKKKARRFLRALQEALFLEGKNYSDEELLLEIAEELGLD 116 (176)
T ss_dssp -T-H--HHHHHHHHHHHHTS---TTSHHHHHHHHHHTT--
T ss_pred -ChhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhCCC
Confidence 4456677777775543 344446799999999984
No 22
>KOG3425|consensus
Probab=66.34 E-value=11 Score=28.49 Aligned_cols=36 Identities=17% Similarity=0.284 Sum_probs=25.2
Q ss_pred EEeCChhhHHHHHHhhHHHHHhccCceeEEEEeeeec
Q psy12257 38 MESLCPGCHQFIKHQLYPVFMKYSNYIQLDLIPFGNA 74 (145)
Q Consensus 38 yESlCPd~~~Fi~~qL~P~~~~l~d~idl~lvPfG~a 74 (145)
.+|-||||++-. -.+..+++..+.-+.|-.|.-|+-
T Consensus 41 GqSWCPdCV~AE-Pvi~~alk~ap~~~~~v~v~VG~r 76 (128)
T KOG3425|consen 41 GQSWCPDCVAAE-PVINEALKHAPEDVHFVHVYVGNR 76 (128)
T ss_pred CCcCCchHHHhh-HHHHHHHHhCCCceEEEEEEecCC
Confidence 356799999764 234445566777788888888864
No 23
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=66.34 E-value=11 Score=28.51 Aligned_cols=41 Identities=15% Similarity=0.381 Sum_probs=31.6
Q ss_pred EEEEEEeCChhhHHHHHHhhHHHHHhcc--CceeEEEEeeeece
Q psy12257 34 VALYMESLCPGCHQFIKHQLYPVFMKYS--NYIQLDLIPFGNAR 75 (145)
Q Consensus 34 V~vyyESlCPd~~~Fi~~qL~P~~~~l~--d~idl~lvPfG~a~ 75 (145)
|++|+--.||.|--... +|..+...+. +-++|++.||+-..
T Consensus 1 I~~~~D~~cP~cyl~~~-~l~~~~~~~~~~~~~~v~~~p~~L~~ 43 (201)
T cd03024 1 IDIWSDVVCPWCYIGKR-RLEKALAELGDEVDVEIEWRPFELNP 43 (201)
T ss_pred CeEEecCcCccHHHHHH-HHHHHHHhCCCCCceEEEEeeeeeCC
Confidence 57899999999987764 6777766664 36999999997543
No 24
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=66.23 E-value=8.6 Score=28.89 Aligned_cols=42 Identities=21% Similarity=0.323 Sum_probs=31.4
Q ss_pred eEEEEEEEeCChhhHHHHHHhhHHHHHhccCceeEEEEeeeec
Q psy12257 32 AKVALYMESLCPGCHQFIKHQLYPVFMKYSNYIQLDLIPFGNA 74 (145)
Q Consensus 32 V~V~vyyESlCPd~~~Fi~~qL~P~~~~l~d~idl~lvPfG~a 74 (145)
++|.+|+--+||.|-.... +|..+...+...++|++.+++-.
T Consensus 1 ~~i~~~~D~~cp~c~~~~~-~l~~l~~~~~~~~~v~~~~~~L~ 42 (193)
T cd03025 1 LELYYFIDPLCGWCYGFEP-LLEKLKEEYGGGIEVELHLGGLL 42 (193)
T ss_pred CeEEEEECCCCchhhCchH-HHHHHHHHhCCCceEEEEecccc
Confidence 4688999999999987653 56666666655688888887743
No 25
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=66.01 E-value=21 Score=24.07 Aligned_cols=35 Identities=17% Similarity=0.325 Sum_probs=26.7
Q ss_pred hcCCeeEEEEEEEeCChhhHHHHHHhhHHHHHhccC
Q psy12257 27 LRIVKAKVALYMESLCPGCHQFIKHQLYPVFMKYSN 62 (145)
Q Consensus 27 ~~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~l~d 62 (145)
...+++-+-+|+-+-||.|+.+.. .|-++...+.+
T Consensus 10 ~~~~~~vlv~f~a~~C~~C~~~~~-~l~~l~~~~~~ 44 (97)
T cd02949 10 HESDRLILVLYTSPTCGPCRTLKP-ILNKVIDEFDG 44 (97)
T ss_pred HhCCCeEEEEEECCCChhHHHHHH-HHHHHHHHhCC
Confidence 456888899999999999998864 45555556655
No 26
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=65.35 E-value=5.6 Score=25.69 Aligned_cols=17 Identities=29% Similarity=0.708 Sum_probs=14.6
Q ss_pred EEEEEEEeCChhhHHHH
Q psy12257 33 KVALYMESLCPGCHQFI 49 (145)
Q Consensus 33 ~V~vyyESlCPd~~~Fi 49 (145)
+|.+|+...||+|....
T Consensus 1 ~v~~y~~~~Cp~C~~~~ 17 (82)
T cd03419 1 PVVVFSKSYCPYCKRAK 17 (82)
T ss_pred CEEEEEcCCCHHHHHHH
Confidence 37899999999999764
No 27
>PF13728 TraF: F plasmid transfer operon protein
Probab=64.59 E-value=7.4 Score=31.26 Aligned_cols=38 Identities=24% Similarity=0.556 Sum_probs=30.9
Q ss_pred CeeEEEEEEEeCChhhHHHHHHhhHHHHHhccCceeEEEEeee
Q psy12257 30 VKAKVALYMESLCPGCHQFIKHQLYPVFMKYSNYIQLDLIPFG 72 (145)
Q Consensus 30 ~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~l~d~idl~lvPfG 72 (145)
.+.-+-+||+|-||.|+.| .|++..+.+.-.|+++|+-
T Consensus 120 ~~~gL~~F~~~~C~~C~~~-----~pil~~~~~~yg~~v~~vs 157 (215)
T PF13728_consen 120 QKYGLFFFYRSDCPYCQQQ-----APILQQFADKYGFSVIPVS 157 (215)
T ss_pred hCeEEEEEEcCCCchhHHH-----HHHHHHHHHHhCCEEEEEe
Confidence 7888999999999999854 5667777777788888874
No 28
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=64.59 E-value=19 Score=25.40 Aligned_cols=41 Identities=20% Similarity=0.194 Sum_probs=30.8
Q ss_pred CCeeEEEEEEEeCChhhHHHHHHhhHHHHHhccCceeEEEEee
Q psy12257 29 IVKAKVALYMESLCPGCHQFIKHQLYPVFMKYSNYIQLDLIPF 71 (145)
Q Consensus 29 ~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~l~d~idl~lvPf 71 (145)
..|+-|-.|+-+-||.|++.+. .|..+++++.+ -++.++..
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p-~l~~l~~~~~~-~~~~vi~i 62 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLP-YLTDLEQKYKD-DGLVVIGV 62 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHH-HHHHHHHHcCc-CCeEEEEe
Confidence 3578888889999999999875 58888888775 34555543
No 29
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=63.61 E-value=19 Score=29.10 Aligned_cols=42 Identities=17% Similarity=0.350 Sum_probs=29.5
Q ss_pred cCCeeEEEEEEEeCChhhHHHHHHhhHHHHHhccCceeEEEEeeee
Q psy12257 28 RIVKAKVALYMESLCPGCHQFIKHQLYPVFMKYSNYIQLDLIPFGN 73 (145)
Q Consensus 28 ~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~l~d~idl~lvPfG~ 73 (145)
...+..|.+|.--.||+|+++-. +|.+ +.+ .-+.+.+++|..
T Consensus 105 ~~~k~~I~vFtDp~CpyCkkl~~-~l~~-~~~--~~v~v~~~~~P~ 146 (232)
T PRK10877 105 PQEKHVITVFTDITCGYCHKLHE-QMKD-YNA--LGITVRYLAFPR 146 (232)
T ss_pred CCCCEEEEEEECCCChHHHHHHH-HHHH-Hhc--CCeEEEEEeccC
Confidence 44688899999999999999974 3433 222 237777776654
No 30
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=62.55 E-value=3.7 Score=30.44 Aligned_cols=34 Identities=21% Similarity=0.492 Sum_probs=28.7
Q ss_pred CChhhHHHHHHhhHHHHHhccCceeEEEEeeeecee
Q psy12257 41 LCPGCHQFIKHQLYPVFMKYSNYIQLDLIPFGNARH 76 (145)
Q Consensus 41 lCPd~~~Fi~~qL~P~~~~l~d~idl~lvPfG~a~~ 76 (145)
.||+|.. .+-|.-.|..+.+.+|++.|+|-+-+.
T Consensus 23 ~Cp~c~~--iEGlLa~~P~l~~~ldV~rV~f~RPR~ 56 (112)
T PF11287_consen 23 YCPHCAA--IEGLLASFPDLRERLDVRRVDFPRPRQ 56 (112)
T ss_pred ECCchHH--HHhHHhhChhhhhcccEEEeCCCCchH
Confidence 5999994 456888889999999999999986653
No 31
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=61.34 E-value=7.7 Score=24.01 Aligned_cols=17 Identities=29% Similarity=0.690 Sum_probs=14.6
Q ss_pred EEEEEEeCChhhHHHHH
Q psy12257 34 VALYMESLCPGCHQFIK 50 (145)
Q Consensus 34 V~vyyESlCPd~~~Fi~ 50 (145)
|.+|...-||+|++...
T Consensus 1 V~vy~~~~C~~C~~~~~ 17 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKE 17 (60)
T ss_dssp EEEEESTTSHHHHHHHH
T ss_pred cEEEEcCCCcCHHHHHH
Confidence 68999999999997753
No 32
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=61.31 E-value=7.3 Score=32.40 Aligned_cols=38 Identities=18% Similarity=0.237 Sum_probs=30.1
Q ss_pred CeeEEEEEEEeCChhhHHHHHHhhHHHHHhccCceeEEEEeee
Q psy12257 30 VKAKVALYMESLCPGCHQFIKHQLYPVFMKYSNYIQLDLIPFG 72 (145)
Q Consensus 30 ~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~l~d~idl~lvPfG 72 (145)
.+--+-+||+|-||.|+. +.|+...+.+.-.|.++|+.
T Consensus 143 ~~~GL~fFy~s~Cp~C~~-----~aPil~~fa~~yg~~v~~VS 180 (248)
T PRK13703 143 EHYGLMFFYRGQDPIDGQ-----LAQVINDFRDTYGLSVIPVS 180 (248)
T ss_pred hcceEEEEECCCCchhHH-----HHHHHHHHHHHhCCeEEEEe
Confidence 446788999999999984 55777777777778888874
No 33
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=60.92 E-value=6.3 Score=25.43 Aligned_cols=16 Identities=31% Similarity=0.764 Sum_probs=14.0
Q ss_pred EEEEEEeCChhhHHHH
Q psy12257 34 VALYMESLCPGCHQFI 49 (145)
Q Consensus 34 V~vyyESlCPd~~~Fi 49 (145)
|.+|+.+.||+|++..
T Consensus 1 V~~f~~~~Cp~C~~~~ 16 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAK 16 (84)
T ss_pred CEEEECCCChhHHHHH
Confidence 5789999999999775
No 34
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=60.49 E-value=7.4 Score=25.11 Aligned_cols=17 Identities=24% Similarity=0.581 Sum_probs=14.8
Q ss_pred EEEEEEEeCChhhHHHH
Q psy12257 33 KVALYMESLCPGCHQFI 49 (145)
Q Consensus 33 ~V~vyyESlCPd~~~Fi 49 (145)
+|+||.-+.||+|++-.
T Consensus 2 ~v~ly~~~~C~~C~ka~ 18 (73)
T cd03027 2 RVTIYSRLGCEDCTAVR 18 (73)
T ss_pred EEEEEecCCChhHHHHH
Confidence 47899999999999765
No 35
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=59.45 E-value=6.2 Score=25.15 Aligned_cols=17 Identities=35% Similarity=0.723 Sum_probs=14.5
Q ss_pred EEEEEEEeCChhhHHHH
Q psy12257 33 KVALYMESLCPGCHQFI 49 (145)
Q Consensus 33 ~V~vyyESlCPd~~~Fi 49 (145)
+|.||.-+.||+|.+..
T Consensus 1 ~i~ly~~~~Cp~C~~ak 17 (75)
T cd03418 1 KVEIYTKPNCPYCVRAK 17 (75)
T ss_pred CEEEEeCCCChHHHHHH
Confidence 37899999999999764
No 36
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=57.03 E-value=31 Score=22.55 Aligned_cols=33 Identities=24% Similarity=0.472 Sum_probs=22.7
Q ss_pred CCeeEEEEEEEeCChhhHHHHHHhhHHHHHhccC
Q psy12257 29 IVKAKVALYMESLCPGCHQFIKHQLYPVFMKYSN 62 (145)
Q Consensus 29 ~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~l~d 62 (145)
..+.-|-.||...||.|+.+. ..|..+...+.+
T Consensus 16 ~~~~vvv~f~~~~C~~C~~~~-~~~~~~~~~~~~ 48 (103)
T PF00085_consen 16 SDKPVVVYFYAPWCPPCKAFK-PILEKLAKEYKD 48 (103)
T ss_dssp TSSEEEEEEESTTSHHHHHHH-HHHHHHHHHTTT
T ss_pred cCCCEEEEEeCCCCCcccccc-ceeccccccccc
Confidence 356677788889999999875 344444445554
No 37
>PHA03050 glutaredoxin; Provisional
Probab=56.11 E-value=7.6 Score=27.90 Aligned_cols=17 Identities=29% Similarity=0.804 Sum_probs=14.4
Q ss_pred EEEEEEEeCChhhHHHH
Q psy12257 33 KVALYMESLCPGCHQFI 49 (145)
Q Consensus 33 ~V~vyyESlCPd~~~Fi 49 (145)
+|.||.-+-||+|++-.
T Consensus 14 ~V~vys~~~CPyC~~ak 30 (108)
T PHA03050 14 KVTIFVKFTCPFCRNAL 30 (108)
T ss_pred CEEEEECCCChHHHHHH
Confidence 37889999999998754
No 38
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=56.07 E-value=7.6 Score=27.22 Aligned_cols=18 Identities=28% Similarity=0.587 Sum_probs=15.1
Q ss_pred EEEEEEEeCChhhHHHHH
Q psy12257 33 KVALYMESLCPGCHQFIK 50 (145)
Q Consensus 33 ~V~vyyESlCPd~~~Fi~ 50 (145)
+|.||.-+.||+|++.-.
T Consensus 9 ~Vvvysk~~Cp~C~~ak~ 26 (99)
T TIGR02189 9 AVVIFSRSSCCMCHVVKR 26 (99)
T ss_pred CEEEEECCCCHHHHHHHH
Confidence 388899999999997653
No 39
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=55.79 E-value=7 Score=24.06 Aligned_cols=15 Identities=33% Similarity=0.897 Sum_probs=13.6
Q ss_pred EEEEEEeCChhhHHH
Q psy12257 34 VALYMESLCPGCHQF 48 (145)
Q Consensus 34 V~vyyESlCPd~~~F 48 (145)
|++|+-+-||.|++.
T Consensus 2 i~lf~~~~C~~C~~~ 16 (74)
T TIGR02196 2 VKVYTTPWCPPCKKA 16 (74)
T ss_pred EEEEcCCCChhHHHH
Confidence 789999999999974
No 40
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=55.56 E-value=33 Score=24.19 Aligned_cols=41 Identities=20% Similarity=0.412 Sum_probs=26.6
Q ss_pred CeeEEEEEEEeCChhhHHHHHHhhHHHHHhccCc-eeEEEEee
Q psy12257 30 VKAKVALYMESLCPGCHQFIKHQLYPVFMKYSNY-IQLDLIPF 71 (145)
Q Consensus 30 ~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~l~d~-idl~lvPf 71 (145)
.|+-|-.||-+-||.|++.+. .|..+++++.+. -+++++..
T Consensus 18 gk~vll~Fwa~wC~~C~~~~p-~l~~~~~~~~~~~~~~~vv~i 59 (131)
T cd03009 18 GKTVGLYFSASWCPPCRAFTP-KLVEFYEKLKESGKNFEIVFI 59 (131)
T ss_pred CcEEEEEEECCCChHHHHHhH-HHHHHHHHHHhcCCCEEEEEE
Confidence 466677788899999998753 466666665432 24444443
No 41
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=55.14 E-value=24 Score=27.97 Aligned_cols=34 Identities=35% Similarity=0.773 Sum_probs=24.2
Q ss_pred EEEEEEeCChhhHHHHHHhhHHHHHhccCceeEEEEeee
Q psy12257 34 VALYMESLCPGCHQFIKHQLYPVFMKYSNYIQLDLIPFG 72 (145)
Q Consensus 34 V~vyyESlCPd~~~Fi~~qL~P~~~~l~d~idl~lvPfG 72 (145)
|-+||.|-||.|+.++- .|..+++++ .+.++++.
T Consensus 73 lV~FwaswCp~C~~e~P-~L~~l~~~~----g~~Vi~Vs 106 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDP-VLKQLAQQY----GFSVFPYT 106 (181)
T ss_pred EEEEECCCCHhHHHHHH-HHHHHHHHc----CCEEEEEE
Confidence 67799999999999863 344444444 47777764
No 42
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=53.70 E-value=11 Score=25.12 Aligned_cols=17 Identities=24% Similarity=0.446 Sum_probs=15.1
Q ss_pred EEEEEEEeCChhhHHHH
Q psy12257 33 KVALYMESLCPGCHQFI 49 (145)
Q Consensus 33 ~V~vyyESlCPd~~~Fi 49 (145)
+|+||+-+-||.|++-.
T Consensus 2 ~v~iy~~~~C~~C~~a~ 18 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAK 18 (85)
T ss_pred EEEEEeCCCChhHHHHH
Confidence 68999999999999765
No 43
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=53.63 E-value=31 Score=25.68 Aligned_cols=41 Identities=17% Similarity=0.290 Sum_probs=29.0
Q ss_pred CCeeEEEEEEEeCChhhHHHHHHhhHHHHHhccCceeEEEEee
Q psy12257 29 IVKAKVALYMESLCPGCHQFIKHQLYPVFMKYSNYIQLDLIPF 71 (145)
Q Consensus 29 ~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~l~d~idl~lvPf 71 (145)
..++.|-.|+-+-||.|++-+ ..|...++++++ -++++|-+
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~-~~l~~l~~~~~~-~~v~~v~i 64 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIE-DRLNRLAKEYGA-KGVAVVAI 64 (171)
T ss_pred CCCEEEEEEECCCCccHHHHH-HHHHHHHHHHhh-CCeEEEEE
Confidence 567888889999999998775 467777777753 23444433
No 44
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=53.47 E-value=30 Score=19.11 Aligned_cols=35 Identities=14% Similarity=0.410 Sum_probs=21.0
Q ss_pred EEEEEEeCChhhHHHHHHhhHHHHHhccCceeEEEEe
Q psy12257 34 VALYMESLCPGCHQFIKHQLYPVFMKYSNYIQLDLIP 70 (145)
Q Consensus 34 V~vyyESlCPd~~~Fi~~qL~P~~~~l~d~idl~lvP 70 (145)
|.+|+.+-||.|++... ++... ....+.+++..+.
T Consensus 1 l~~~~~~~c~~c~~~~~-~~~~~-~~~~~~~~~~~~~ 35 (69)
T cd01659 1 LVLFYAPWCPFCQALRP-VLAEL-ALLNKGVKFEAVD 35 (69)
T ss_pred CEEEECCCChhHHhhhh-HHHHH-HhhCCCcEEEEEE
Confidence 35789999999998853 34333 3334444444443
No 45
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=52.71 E-value=8.6 Score=24.99 Aligned_cols=16 Identities=31% Similarity=0.812 Sum_probs=13.6
Q ss_pred EEEEEEeCChhhHHHH
Q psy12257 34 VALYMESLCPGCHQFI 49 (145)
Q Consensus 34 V~vyyESlCPd~~~Fi 49 (145)
|+||..+-||+|.+-.
T Consensus 1 v~ly~~~~Cp~C~~a~ 16 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAK 16 (79)
T ss_pred CEEEecCCChhHHHHH
Confidence 5789999999999754
No 46
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=52.67 E-value=12 Score=31.12 Aligned_cols=38 Identities=13% Similarity=0.337 Sum_probs=29.9
Q ss_pred CeeEEEEEEEeCChhhHHHHHHhhHHHHHhccCceeEEEEeee
Q psy12257 30 VKAKVALYMESLCPGCHQFIKHQLYPVFMKYSNYIQLDLIPFG 72 (145)
Q Consensus 30 ~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~l~d~idl~lvPfG 72 (145)
.+--+-+||+|.||.|+. +.|+...+.+.-.|.++|+.
T Consensus 150 ~~~gL~fFy~~~C~~C~~-----~apil~~fa~~ygi~v~~VS 187 (256)
T TIGR02739 150 QSYGLFFFYRGKSPISQK-----MAPVIQAFAKEYGISVIPIS 187 (256)
T ss_pred hceeEEEEECCCCchhHH-----HHHHHHHHHHHhCCeEEEEe
Confidence 457889999999999985 55666777777778888874
No 47
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=52.67 E-value=33 Score=22.44 Aligned_cols=21 Identities=14% Similarity=0.373 Sum_probs=18.9
Q ss_pred CCeeEEEEEEEeCChhhHHHH
Q psy12257 29 IVKAKVALYMESLCPGCHQFI 49 (145)
Q Consensus 29 ~~kV~V~vyyESlCPd~~~Fi 49 (145)
..++.+-.||.+-||.|+.+.
T Consensus 12 ~~~~~~i~f~~~~C~~c~~~~ 32 (102)
T TIGR01126 12 SNKDVLVEFYAPWCGHCKNLA 32 (102)
T ss_pred cCCcEEEEEECCCCHHHHhhC
Confidence 678889999999999999985
No 48
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=52.65 E-value=27 Score=27.58 Aligned_cols=41 Identities=20% Similarity=0.473 Sum_probs=25.2
Q ss_pred CeeEEEEEEEeCChhhHHHHHHhhHHHHHhccCc-eeEEEEee
Q psy12257 30 VKAKVALYMESLCPGCHQFIKHQLYPVFMKYSNY-IQLDLIPF 71 (145)
Q Consensus 30 ~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~l~d~-idl~lvPf 71 (145)
.+|.|.+|.+-.||.|.+.+- .|...+....+. ..++.+||
T Consensus 84 ~~v~v~~f~d~~Cp~C~~~~~-~l~~~~i~~~~~~~~~~~~~f 125 (244)
T COG1651 84 APVTVVEFFDYTCPYCKEAFP-ELKKKYIDDGKVRLVLREFPF 125 (244)
T ss_pred CCceEEEEecCcCccHHHHHH-HHHHHhhhcCCCceEEEEeec
Confidence 489999999999999955443 333333333333 44444444
No 49
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=52.27 E-value=11 Score=23.05 Aligned_cols=16 Identities=31% Similarity=0.762 Sum_probs=13.8
Q ss_pred EEEEEEEeCChhhHHH
Q psy12257 33 KVALYMESLCPGCHQF 48 (145)
Q Consensus 33 ~V~vyyESlCPd~~~F 48 (145)
+|.+|+.+-||+|++.
T Consensus 1 ~v~l~~~~~c~~c~~~ 16 (73)
T cd02976 1 EVTVYTKPDCPYCKAT 16 (73)
T ss_pred CEEEEeCCCChhHHHH
Confidence 3789999999999974
No 50
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=52.09 E-value=38 Score=25.71 Aligned_cols=32 Identities=16% Similarity=0.466 Sum_probs=24.7
Q ss_pred CeeEEEEEEEeCChhhHHHHHHhhHHHHHhccC
Q psy12257 30 VKAKVALYMESLCPGCHQFIKHQLYPVFMKYSN 62 (145)
Q Consensus 30 ~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~l~d 62 (145)
.|+-+--|+-|-||.|+.++- .|..+|.++.+
T Consensus 25 gk~vlL~FwAsWCppCr~e~P-~L~~ly~~~~~ 56 (146)
T cd03008 25 NRVLLLFFGAVVSPQCQLFAP-KLKDFFVRLTD 56 (146)
T ss_pred CCEEEEEEECCCChhHHHHHH-HHHHHHHHHHh
Confidence 578888899999999999985 46666665543
No 51
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=49.69 E-value=44 Score=24.65 Aligned_cols=36 Identities=14% Similarity=0.338 Sum_probs=23.5
Q ss_pred cCCeeEEEEEEEeCChhhHHHHHHhhHHHHHhccCce
Q psy12257 28 RIVKAKVALYMESLCPGCHQFIKHQLYPVFMKYSNYI 64 (145)
Q Consensus 28 ~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~l~d~i 64 (145)
...++-|-.||-+-||.|+.+.- .|..+.+.+.+.+
T Consensus 18 ~~gk~vvV~F~A~WC~~C~~~~p-~l~~l~~~~~~~~ 53 (142)
T cd02950 18 SNGKPTLVEFYADWCTVCQEMAP-DVAKLKQKYGDQV 53 (142)
T ss_pred hCCCEEEEEEECCcCHHHHHhHH-HHHHHHHHhccCe
Confidence 45677777889999999998753 3434444444433
No 52
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=48.73 E-value=15 Score=23.53 Aligned_cols=17 Identities=29% Similarity=0.628 Sum_probs=14.8
Q ss_pred EEEEEEEeCChhhHHHH
Q psy12257 33 KVALYMESLCPGCHQFI 49 (145)
Q Consensus 33 ~V~vyyESlCPd~~~Fi 49 (145)
+|.||.-+-||+|.+-.
T Consensus 2 ~v~lys~~~Cp~C~~ak 18 (72)
T cd03029 2 SVSLFTKPGCPFCARAK 18 (72)
T ss_pred eEEEEECCCCHHHHHHH
Confidence 58899999999999763
No 53
>PRK09381 trxA thioredoxin; Provisional
Probab=47.73 E-value=58 Score=22.09 Aligned_cols=34 Identities=15% Similarity=0.246 Sum_probs=22.6
Q ss_pred cCCeeEEEEEEEeCChhhHHHHHHhhHHHHHhccC
Q psy12257 28 RIVKAKVALYMESLCPGCHQFIKHQLYPVFMKYSN 62 (145)
Q Consensus 28 ~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~l~d 62 (145)
..++.-|-.||-+-||.|+.+.. .|..+.+++.+
T Consensus 19 ~~~~~vvv~f~~~~C~~C~~~~p-~~~~l~~~~~~ 52 (109)
T PRK09381 19 KADGAILVDFWAEWCGPCKMIAP-ILDEIADEYQG 52 (109)
T ss_pred cCCCeEEEEEECCCCHHHHHHhH-HHHHHHHHhCC
Confidence 34566688888999999998753 34444444444
No 54
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=47.66 E-value=12 Score=25.19 Aligned_cols=17 Identities=29% Similarity=0.712 Sum_probs=14.6
Q ss_pred EEEEEEEeCChhhHHHH
Q psy12257 33 KVALYMESLCPGCHQFI 49 (145)
Q Consensus 33 ~V~vyyESlCPd~~~Fi 49 (145)
+|+||.-+-||+|.+--
T Consensus 2 ~v~iyt~~~CPyC~~ak 18 (80)
T COG0695 2 NVTIYTKPGCPYCKRAK 18 (80)
T ss_pred CEEEEECCCCchHHHHH
Confidence 48899999999999753
No 55
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=47.61 E-value=63 Score=20.55 Aligned_cols=30 Identities=10% Similarity=0.253 Sum_probs=20.7
Q ss_pred CeeEEEEEEEeCChhhHHHHHHhhHHHHHhc
Q psy12257 30 VKAKVALYMESLCPGCHQFIKHQLYPVFMKY 60 (145)
Q Consensus 30 ~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~l 60 (145)
.+.-+-.||.+-||.|+.+.. .+..+.+.+
T Consensus 15 ~~~~~v~f~~~~C~~C~~~~~-~~~~~~~~~ 44 (101)
T cd02961 15 SKDVLVEFYAPWCGHCKALAP-EYEKLAKEL 44 (101)
T ss_pred CCcEEEEEECCCCHHHHhhhH-HHHHHHHHh
Confidence 336778888899999998864 344444444
No 56
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=47.37 E-value=51 Score=23.25 Aligned_cols=41 Identities=20% Similarity=0.496 Sum_probs=26.1
Q ss_pred CeeEEEEEEEeCChhhHHHHHHhhHHHHHhccCceeEEEEeee
Q psy12257 30 VKAKVALYMESLCPGCHQFIKHQLYPVFMKYSNYIQLDLIPFG 72 (145)
Q Consensus 30 ~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~l~d~idl~lvPfG 72 (145)
.++-|-.|.-+-||.|++-+. .|...++++.+ -++.+|-.+
T Consensus 24 ~~~vl~f~~~~~Cp~C~~~~~-~l~~~~~~~~~-~~v~vv~V~ 64 (149)
T cd02970 24 GPVVVVFYRGFGCPFCREYLR-ALSKLLPELDA-LGVELVAVG 64 (149)
T ss_pred CCEEEEEECCCCChhHHHHHH-HHHHHHHHHHh-cCeEEEEEe
Confidence 444454455789999999875 57777776642 234555443
No 57
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=46.83 E-value=13 Score=25.04 Aligned_cols=16 Identities=25% Similarity=0.542 Sum_probs=14.0
Q ss_pred EEEEEEeCChhhHHHH
Q psy12257 34 VALYMESLCPGCHQFI 49 (145)
Q Consensus 34 V~vyyESlCPd~~~Fi 49 (145)
|.||..+-||+|.+--
T Consensus 2 V~vys~~~Cp~C~~ak 17 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAK 17 (86)
T ss_pred EEEEeCCCCccHHHHH
Confidence 7899999999999754
No 58
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=46.19 E-value=45 Score=22.75 Aligned_cols=40 Identities=25% Similarity=0.453 Sum_probs=26.6
Q ss_pred CeeEEEEEEEe-CChhhHHHHHHhhHHHHHhccC-ceeEEEEe
Q psy12257 30 VKAKVALYMES-LCPGCHQFIKHQLYPVFMKYSN-YIQLDLIP 70 (145)
Q Consensus 30 ~kV~V~vyyES-lCPd~~~Fi~~qL~P~~~~l~d-~idl~lvP 70 (145)
.|..|-++|.+ .||.|+.-+. +|...+.++++ .+++-.|-
T Consensus 25 gk~~vl~f~~~~~c~~c~~~l~-~l~~~~~~~~~~~~~vi~is 66 (124)
T PF00578_consen 25 GKPVVLFFWPTAWCPFCQAELP-ELNELYKKYKDKGVQVIGIS 66 (124)
T ss_dssp TSEEEEEEESTTTSHHHHHHHH-HHHHHHHHHHTTTEEEEEEE
T ss_pred CCcEEEEEeCccCccccccchh-HHHHHhhhhccceEEeeecc
Confidence 45666667777 9999998875 57777776654 34443333
No 59
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=44.86 E-value=62 Score=21.69 Aligned_cols=22 Identities=9% Similarity=0.320 Sum_probs=17.9
Q ss_pred cCCeeEEEEEEEeCChhhHHHH
Q psy12257 28 RIVKAKVALYMESLCPGCHQFI 49 (145)
Q Consensus 28 ~~~kV~V~vyyESlCPd~~~Fi 49 (145)
...+.-|-.||-+-||.|+++.
T Consensus 16 ~~~~~~lv~f~a~wC~~C~~~~ 37 (109)
T cd03002 16 NTNYTTLVEFYAPWCGHCKNLK 37 (109)
T ss_pred cCCCeEEEEEECCCCHHHHhhC
Confidence 4567678889999999999765
No 60
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=44.78 E-value=53 Score=23.14 Aligned_cols=34 Identities=15% Similarity=0.280 Sum_probs=26.0
Q ss_pred CCeeEEEEEEEeCChh-hHHHHHHhhHHHHHhccCc
Q psy12257 29 IVKAKVALYMESLCPG-CHQFIKHQLYPVFMKYSNY 63 (145)
Q Consensus 29 ~~kV~V~vyyESlCPd-~~~Fi~~qL~P~~~~l~d~ 63 (145)
..|+.|-+|+-+-||. |++-+. .|...+.++.+.
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~-~l~~~~~~~~~~ 55 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLA-NLAQALKQLGAD 55 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHH-HHHHHHHHhhHh
Confidence 4577888889999998 998875 477777777553
No 61
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=44.54 E-value=66 Score=20.78 Aligned_cols=33 Identities=15% Similarity=0.242 Sum_probs=21.6
Q ss_pred cCCeeEEEEEEEeCChhhHHHHHHhhHHHHHhcc
Q psy12257 28 RIVKAKVALYMESLCPGCHQFIKHQLYPVFMKYS 61 (145)
Q Consensus 28 ~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~l~ 61 (145)
..++.-|-.||..-||.|+.+.. .|..+...+.
T Consensus 12 ~~~~~vvi~f~~~~C~~C~~~~~-~l~~~~~~~~ 44 (101)
T TIGR01068 12 SSDKPVLVDFWAPWCGPCKMIAP-ILEELAKEYE 44 (101)
T ss_pred hcCCcEEEEEECCCCHHHHHhCH-HHHHHHHHhc
Confidence 34556677888999999998853 3433333444
No 62
>PTZ00051 thioredoxin; Provisional
Probab=44.12 E-value=75 Score=20.88 Aligned_cols=31 Identities=6% Similarity=0.113 Sum_probs=21.9
Q ss_pred cCCeeEEEEEEEeCChhhHHHHHHhhHHHHHh
Q psy12257 28 RIVKAKVALYMESLCPGCHQFIKHQLYPVFMK 59 (145)
Q Consensus 28 ~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~ 59 (145)
+..+.-+-.||.+-||.|+.+.. .|..+..+
T Consensus 16 ~~~~~vli~f~~~~C~~C~~~~~-~l~~l~~~ 46 (98)
T PTZ00051 16 SQNELVIVDFYAEWCGPCKRIAP-FYEECSKE 46 (98)
T ss_pred hcCCeEEEEEECCCCHHHHHHhH-HHHHHHHH
Confidence 45677788899999999998853 34333333
No 63
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=43.88 E-value=77 Score=20.41 Aligned_cols=31 Identities=23% Similarity=0.433 Sum_probs=22.4
Q ss_pred CeeEEEEEEEeCChhhHHHHHHhhHHHHHhcc
Q psy12257 30 VKAKVALYMESLCPGCHQFIKHQLYPVFMKYS 61 (145)
Q Consensus 30 ~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~l~ 61 (145)
.|..|-.|+-+-||.|++++ ..|.....++.
T Consensus 19 ~k~~ll~f~~~~C~~C~~~~-~~l~~~~~~~~ 49 (116)
T cd02966 19 GKVVLVNFWASWCPPCRAEM-PELEALAKEYK 49 (116)
T ss_pred CCEEEEEeecccChhHHHHh-HHHHHHHHHhC
Confidence 56778888889999999875 34555555553
No 64
>PRK10638 glutaredoxin 3; Provisional
Probab=43.59 E-value=23 Score=23.46 Aligned_cols=17 Identities=35% Similarity=0.856 Sum_probs=14.8
Q ss_pred EEEEEEEeCChhhHHHH
Q psy12257 33 KVALYMESLCPGCHQFI 49 (145)
Q Consensus 33 ~V~vyyESlCPd~~~Fi 49 (145)
+|++|..+-||.|++..
T Consensus 3 ~v~ly~~~~Cp~C~~a~ 19 (83)
T PRK10638 3 NVEIYTKATCPFCHRAK 19 (83)
T ss_pred cEEEEECCCChhHHHHH
Confidence 58899999999999764
No 65
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=43.28 E-value=69 Score=23.39 Aligned_cols=32 Identities=16% Similarity=0.362 Sum_probs=24.1
Q ss_pred CeeEEEEEEEeCChhhHHHHHHhhHHHHHhccC
Q psy12257 30 VKAKVALYMESLCPGCHQFIKHQLYPVFMKYSN 62 (145)
Q Consensus 30 ~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~l~d 62 (145)
.|..+-.||-+.||.|++.+ ..|.....++.+
T Consensus 61 ~k~~~l~f~a~~C~~C~~~~-~~l~~~~~~~~~ 92 (173)
T PRK03147 61 GKGVFLNFWGTWCKPCEKEM-PYMNELYPKYKE 92 (173)
T ss_pred CCEEEEEEECCcCHHHHHHH-HHHHHHHHHhhc
Confidence 46666788899999999876 467777766654
No 66
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=43.11 E-value=56 Score=25.62 Aligned_cols=21 Identities=14% Similarity=0.420 Sum_probs=17.8
Q ss_pred cCCeeEEEEEEEeCChhhHHH
Q psy12257 28 RIVKAKVALYMESLCPGCHQF 48 (145)
Q Consensus 28 ~~~kV~V~vyyESlCPd~~~F 48 (145)
...+|.|.+|+-+-||.|...
T Consensus 131 ~~~pv~I~~F~a~~C~~C~~~ 151 (215)
T TIGR02187 131 LDEPVRIEVFVTPTCPYCPYA 151 (215)
T ss_pred cCCCcEEEEEECCCCCCcHHH
Confidence 356889999999999999954
No 67
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=42.92 E-value=37 Score=23.70 Aligned_cols=20 Identities=20% Similarity=0.218 Sum_probs=16.5
Q ss_pred CeeEEEEEEEeCChhhHHHH
Q psy12257 30 VKAKVALYMESLCPGCHQFI 49 (145)
Q Consensus 30 ~kV~V~vyyESlCPd~~~Fi 49 (145)
.|+-|-.|+-+-||.|+..+
T Consensus 25 gk~vvv~F~a~~C~~C~~~~ 44 (127)
T cd03010 25 GKPYLLNVWASWCAPCREEH 44 (127)
T ss_pred CCEEEEEEEcCcCHHHHHHH
Confidence 46667788899999999875
No 68
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=42.76 E-value=86 Score=20.61 Aligned_cols=22 Identities=9% Similarity=0.288 Sum_probs=16.9
Q ss_pred cCCeeEEEEEEEeCChhhHHHH
Q psy12257 28 RIVKAKVALYMESLCPGCHQFI 49 (145)
Q Consensus 28 ~~~kV~V~vyyESlCPd~~~Fi 49 (145)
...+.-+-.+|-+-|+.|+.+.
T Consensus 16 ~~~~~vlv~f~a~~C~~C~~~~ 37 (103)
T cd03001 16 NSDDVWLVEFYAPWCGHCKNLA 37 (103)
T ss_pred cCCCcEEEEEECCCCHHHHHHh
Confidence 4455566678889999999885
No 69
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=42.71 E-value=60 Score=23.12 Aligned_cols=40 Identities=23% Similarity=0.354 Sum_probs=27.7
Q ss_pred CCeeEEEEEEEe-CChhhHHHHHHhhHHHHHhccCc-eeEEEE
Q psy12257 29 IVKAKVALYMES-LCPGCHQFIKHQLYPVFMKYSNY-IQLDLI 69 (145)
Q Consensus 29 ~~kV~V~vyyES-lCPd~~~Fi~~qL~P~~~~l~d~-idl~lv 69 (145)
..|+.|-.+|-+ -||.|+.-+. .|..+.+++.+. +++-.|
T Consensus 27 ~gk~~vv~f~~~~~Cp~C~~~~p-~l~~l~~~~~~~~v~~v~v 68 (146)
T PF08534_consen 27 KGKPVVVNFWASAWCPPCRKELP-YLNELQEKYKDKGVDVVGV 68 (146)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHH-HHHHHHHHHHTTTCEEEEE
T ss_pred CCCeEEEEEEccCCCCcchhhhh-hHHhhhhhhccCceEEEEe
Confidence 356677788888 9999998876 666666554433 555555
No 70
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=42.30 E-value=81 Score=20.63 Aligned_cols=23 Identities=13% Similarity=0.251 Sum_probs=17.9
Q ss_pred hcCCeeEEEEEEEeCChhhHHHH
Q psy12257 27 LRIVKAKVALYMESLCPGCHQFI 49 (145)
Q Consensus 27 ~~~~kV~V~vyyESlCPd~~~Fi 49 (145)
.+..+.-|-.||-+-||.|+++.
T Consensus 15 ~~~~~~~~v~f~a~~C~~C~~~~ 37 (105)
T cd02998 15 GDDKKDVLVEFYAPWCGHCKNLA 37 (105)
T ss_pred cCCCCcEEEEEECCCCHHHHhhC
Confidence 33455678889999999999874
No 71
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=42.25 E-value=1e+02 Score=20.62 Aligned_cols=22 Identities=9% Similarity=0.339 Sum_probs=17.4
Q ss_pred cCCeeEEEEEEEeCChhhHHHH
Q psy12257 28 RIVKAKVALYMESLCPGCHQFI 49 (145)
Q Consensus 28 ~~~kV~V~vyyESlCPd~~~Fi 49 (145)
...++-|-.||-+-||.|+++.
T Consensus 17 ~~~~~v~v~f~a~wC~~C~~~~ 38 (104)
T cd03004 17 NRKEPWLVDFYAPWCGPCQALL 38 (104)
T ss_pred cCCCeEEEEEECCCCHHHHHHH
Confidence 4456777789999999999863
No 72
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=41.69 E-value=51 Score=29.37 Aligned_cols=21 Identities=14% Similarity=0.338 Sum_probs=18.5
Q ss_pred CCeeEEEEEEEeCChhhHHHH
Q psy12257 29 IVKAKVALYMESLCPGCHQFI 49 (145)
Q Consensus 29 ~~kV~V~vyyESlCPd~~~Fi 49 (145)
..+++|.+|+-.-||+|.+.+
T Consensus 115 ~~~~~i~~fv~~~Cp~Cp~~v 135 (517)
T PRK15317 115 DGDFHFETYVSLSCHNCPDVV 135 (517)
T ss_pred CCCeEEEEEEcCCCCCcHHHH
Confidence 468999999999999999754
No 73
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=41.33 E-value=1.1e+02 Score=21.48 Aligned_cols=23 Identities=22% Similarity=0.377 Sum_probs=18.4
Q ss_pred cCCeeEEEEEEEeCChhhHHHHH
Q psy12257 28 RIVKAKVALYMESLCPGCHQFIK 50 (145)
Q Consensus 28 ~~~kV~V~vyyESlCPd~~~Fi~ 50 (145)
...+.-|-.||-+-||.|+.+..
T Consensus 17 ~~~~~vvV~f~a~wC~~C~~~~~ 39 (114)
T cd02992 17 GSPSAWLVEFYASWCGHCRAFAP 39 (114)
T ss_pred cCCCeEEEEEECCCCHHHHHHhH
Confidence 44577788899999999998743
No 74
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=40.99 E-value=60 Score=21.85 Aligned_cols=23 Identities=17% Similarity=0.192 Sum_probs=17.9
Q ss_pred cCCeeEEEEEEEeCChhhHHHHH
Q psy12257 28 RIVKAKVALYMESLCPGCHQFIK 50 (145)
Q Consensus 28 ~~~kV~V~vyyESlCPd~~~Fi~ 50 (145)
...+.-+-.||-+-||.|+.+..
T Consensus 9 ~~~k~vlv~f~a~wC~~C~~~~~ 31 (104)
T cd02953 9 AQGKPVFVDFTADWCVTCKVNEK 31 (104)
T ss_pred HcCCeEEEEEEcchhHHHHHHHH
Confidence 34566677888999999999864
No 75
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=40.40 E-value=24 Score=25.56 Aligned_cols=22 Identities=18% Similarity=0.393 Sum_probs=17.0
Q ss_pred cCCeeEEEEEEEeCChhhHHHH
Q psy12257 28 RIVKAKVALYMESLCPGCHQFI 49 (145)
Q Consensus 28 ~~~kV~V~vyyESlCPd~~~Fi 49 (145)
...+.-|-.|+-+-||+|+.|-
T Consensus 21 ~~~~~~iv~f~~~~Cp~C~~~~ 42 (122)
T TIGR01295 21 DKKETATFFIGRKTCPYCRKFS 42 (122)
T ss_pred HcCCcEEEEEECCCChhHHHHh
Confidence 4455567789999999999774
No 76
>KOG1752|consensus
Probab=40.31 E-value=18 Score=26.14 Aligned_cols=39 Identities=28% Similarity=0.462 Sum_probs=25.2
Q ss_pred EEEEEEEeCChhhHHHHHHhhHHHHHhccCceeEEEEeeee
Q psy12257 33 KVALYMESLCPGCHQFIKHQLYPVFMKYSNYIQLDLIPFGN 73 (145)
Q Consensus 33 ~V~vyyESlCPd~~~Fi~~qL~P~~~~l~d~idl~lvPfG~ 73 (145)
+|-||.-|.||+|.+ +++ |+-.+.--...++|.-.|-|.
T Consensus 15 ~VVifSKs~C~~c~~-~k~-ll~~~~v~~~vvELD~~~~g~ 53 (104)
T KOG1752|consen 15 PVVIFSKSSCPYCHR-AKE-LLSDLGVNPKVVELDEDEDGS 53 (104)
T ss_pred CEEEEECCcCchHHH-HHH-HHHhCCCCCEEEEccCCCCcH
Confidence 377899999999998 554 433332233566766666553
No 77
>PTZ00256 glutathione peroxidase; Provisional
Probab=40.07 E-value=65 Score=24.61 Aligned_cols=42 Identities=19% Similarity=0.366 Sum_probs=27.4
Q ss_pred cCCeeEEEEEEEeCChhhHHHHHHhhHHHHHhccCceeEEEEee
Q psy12257 28 RIVKAKVALYMESLCPGCHQFIKHQLYPVFMKYSNYIQLDLIPF 71 (145)
Q Consensus 28 ~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~l~d~idl~lvPf 71 (145)
...+|-|-+++-|-||.|++-+- .|...++++++. ++++|-+
T Consensus 39 ~Gk~vvlv~n~atwCp~C~~e~p-~l~~l~~~~~~~-gv~vv~v 80 (183)
T PTZ00256 39 KGKKAIIVVNVACKCGLTSDHYT-QLVELYKQYKSQ-GLEILAF 80 (183)
T ss_pred CCCcEEEEEEECCCCCchHHHHH-HHHHHHHHHhhC-CcEEEEE
Confidence 44445566779999999998774 466666666542 3444444
No 78
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=39.95 E-value=1.1e+02 Score=20.73 Aligned_cols=33 Identities=9% Similarity=0.132 Sum_probs=23.6
Q ss_pred cCCeeEEEEEEEeCChhhHHHHHHhhHHHHHhcc
Q psy12257 28 RIVKAKVALYMESLCPGCHQFIKHQLYPVFMKYS 61 (145)
Q Consensus 28 ~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~l~ 61 (145)
...++-|-.||-+-||.|+.+.. .|.++...+.
T Consensus 15 ~~~~~vvv~F~a~wC~~Ck~~~p-~l~~~~~~~~ 47 (102)
T cd02948 15 SNKGLTVVDVYQEWCGPCKAVVS-LFKKIKNELG 47 (102)
T ss_pred ccCCeEEEEEECCcCHhHHHHhH-HHHHHHHHcC
Confidence 45677788899999999998754 3444445444
No 79
>PRK10996 thioredoxin 2; Provisional
Probab=39.86 E-value=66 Score=23.51 Aligned_cols=34 Identities=18% Similarity=0.193 Sum_probs=25.0
Q ss_pred cCCeeEEEEEEEeCChhhHHHHHHhhHHHHHhccC
Q psy12257 28 RIVKAKVALYMESLCPGCHQFIKHQLYPVFMKYSN 62 (145)
Q Consensus 28 ~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~l~d 62 (145)
..++.-+-.||-+-||.|+.+.. .|..+..++.+
T Consensus 50 ~~~k~vvv~F~a~wC~~C~~~~~-~l~~l~~~~~~ 83 (139)
T PRK10996 50 QDDLPVVIDFWAPWCGPCRNFAP-IFEDVAAERSG 83 (139)
T ss_pred hCCCeEEEEEECCCCHHHHHHHH-HHHHHHHHhCC
Confidence 44677888999999999999864 45555555554
No 80
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=39.43 E-value=64 Score=23.58 Aligned_cols=40 Identities=15% Similarity=0.140 Sum_probs=27.9
Q ss_pred CeeEEEEEEEeCChhhHHHHHHhhHHHHHhccC-ceeEEEEe
Q psy12257 30 VKAKVALYMESLCPGCHQFIKHQLYPVFMKYSN-YIQLDLIP 70 (145)
Q Consensus 30 ~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~l~d-~idl~lvP 70 (145)
.|+-|-+++-+-||.|++-+. .|...+.++++ -+.+--|+
T Consensus 22 Gk~vvv~~~as~C~~c~~~~~-~l~~l~~~~~~~~~~v~~i~ 62 (153)
T TIGR02540 22 GKVSLVVNVASECGFTDQNYR-ALQELHRELGPSHFNVLAFP 62 (153)
T ss_pred CCEEEEEEeCCCCCchhhhHH-HHHHHHHHHhhCCeEEEEEe
Confidence 466666799999999998875 57777777754 34443333
No 81
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=38.97 E-value=65 Score=21.77 Aligned_cols=26 Identities=31% Similarity=0.732 Sum_probs=18.3
Q ss_pred CCeeEEEEEEEeCChhhHHHHHHhhHH
Q psy12257 29 IVKAKVALYMESLCPGCHQFIKHQLYP 55 (145)
Q Consensus 29 ~~kV~V~vyyESlCPd~~~Fi~~qL~P 55 (145)
..|-.|-+|+-.-||.|+.+-. +|.+
T Consensus 4 ~~k~~v~~F~~~~C~~C~~~~~-~~~~ 29 (112)
T PF13098_consen 4 NGKPIVVVFTDPWCPYCKKLEK-ELFP 29 (112)
T ss_dssp TSSEEEEEEE-TT-HHHHHHHH-HHHH
T ss_pred CCCEEEEEEECCCCHHHHHHHH-HHHH
Confidence 4566788889999999999865 4554
No 82
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=38.93 E-value=84 Score=21.21 Aligned_cols=32 Identities=9% Similarity=0.437 Sum_probs=21.2
Q ss_pred CeeEEEEEEEeCChhhHHHHHHhhHHHHHhccC
Q psy12257 30 VKAKVALYMESLCPGCHQFIKHQLYPVFMKYSN 62 (145)
Q Consensus 30 ~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~l~d 62 (145)
.|+-|-.||-+-||.|+..+.. |..++++..+
T Consensus 21 gk~vvl~F~~~wC~~C~~~~p~-l~~~~~~~~~ 52 (114)
T cd02967 21 GRPTLLFFLSPTCPVCKKLLPV-IRSIARAEAD 52 (114)
T ss_pred CCeEEEEEECCCCcchHhHhHH-HHHHHHHhcC
Confidence 5666777899999999987532 4444444433
No 83
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=38.54 E-value=86 Score=21.54 Aligned_cols=22 Identities=18% Similarity=0.475 Sum_probs=18.2
Q ss_pred cCCeeEEEEEEEeCChhhHHHH
Q psy12257 28 RIVKAKVALYMESLCPGCHQFI 49 (145)
Q Consensus 28 ~~~kV~V~vyyESlCPd~~~Fi 49 (145)
..+++-+-.||-+-||.|+++.
T Consensus 19 ~~~k~vlv~f~a~wC~~C~~~~ 40 (109)
T cd02993 19 RRNQSTLVVLYAPWCPFCQAME 40 (109)
T ss_pred hcCCCEEEEEECCCCHHHHHHh
Confidence 3567888889999999999764
No 84
>PRK10329 glutaredoxin-like protein; Provisional
Probab=38.44 E-value=26 Score=23.59 Aligned_cols=15 Identities=27% Similarity=0.882 Sum_probs=13.7
Q ss_pred EEEEEEEeCChhhHH
Q psy12257 33 KVALYMESLCPGCHQ 47 (145)
Q Consensus 33 ~V~vyyESlCPd~~~ 47 (145)
+|+||.-+-||+|.+
T Consensus 2 ~v~lYt~~~Cp~C~~ 16 (81)
T PRK10329 2 RITIYTRNDCVQCHA 16 (81)
T ss_pred EEEEEeCCCCHhHHH
Confidence 588999999999997
No 85
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=37.83 E-value=40 Score=25.62 Aligned_cols=19 Identities=37% Similarity=0.891 Sum_probs=15.9
Q ss_pred eeEEEEEEEeCChhhHHHH
Q psy12257 31 KAKVALYMESLCPGCHQFI 49 (145)
Q Consensus 31 kV~V~vyyESlCPd~~~Fi 49 (145)
+..|-.||.|-||.|++.+
T Consensus 51 ~~~lvnFWAsWCppCr~e~ 69 (153)
T TIGR02738 51 DYALVFFYQSTCPYCHQFA 69 (153)
T ss_pred CCEEEEEECCCChhHHHHH
Confidence 4448889999999999885
No 86
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=37.80 E-value=59 Score=24.17 Aligned_cols=35 Identities=11% Similarity=0.173 Sum_probs=24.2
Q ss_pred EEEEEEeCChhhHHHHHHhhHHHHHhccCceeEEEEee
Q psy12257 34 VALYMESLCPGCHQFIKHQLYPVFMKYSNYIQLDLIPF 71 (145)
Q Consensus 34 V~vyyESlCPd~~~Fi~~qL~P~~~~l~d~idl~lvPf 71 (145)
|++|+--.||.|--... .|..+...+. ++|++.||
T Consensus 1 i~~~~D~~cP~cy~~~~-~l~~~~~~~~--~~i~~~p~ 35 (192)
T cd03022 1 IDFYFDFSSPYSYLAHE-RLPALAARHG--ATVRYRPI 35 (192)
T ss_pred CeEEEeCCChHHHHHHH-HHHHHHHHhC--CeeEEeee
Confidence 57899999999976543 3444433443 77888888
No 87
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=37.36 E-value=1.1e+02 Score=19.87 Aligned_cols=35 Identities=20% Similarity=0.497 Sum_probs=20.7
Q ss_pred eEEEEEEEeCChhhHHHHHHhhHHHHHhccCceeEEEEe
Q psy12257 32 AKVALYMESLCPGCHQFIKHQLYPVFMKYSNYIQLDLIP 70 (145)
Q Consensus 32 V~V~vyyESlCPd~~~Fi~~qL~P~~~~l~d~idl~lvP 70 (145)
++|.+ +-+-||.|.+... -+..+...+ + ++++++-
T Consensus 1 m~I~v-~~~~C~~C~~~~~-~~~~~~~~~-~-i~~ei~~ 35 (76)
T PF13192_consen 1 MKIKV-FSPGCPYCPELVQ-LLKEAAEEL-G-IEVEIID 35 (76)
T ss_dssp EEEEE-ECSSCTTHHHHHH-HHHHHHHHT-T-EEEEEEE
T ss_pred CEEEE-eCCCCCCcHHHHH-HHHHHHHhc-C-CeEEEEE
Confidence 56788 5666999995542 233344444 3 6665554
No 88
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=36.28 E-value=1.2e+02 Score=20.77 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=18.7
Q ss_pred cCCeeEEEEEEEeCChhhHHHH
Q psy12257 28 RIVKAKVALYMESLCPGCHQFI 49 (145)
Q Consensus 28 ~~~kV~V~vyyESlCPd~~~Fi 49 (145)
...++-|-.||-+-||.|+++.
T Consensus 16 ~~g~~vlV~F~a~WC~~C~~~~ 37 (100)
T cd02999 16 NREDYTAVLFYASWCPFSASFR 37 (100)
T ss_pred cCCCEEEEEEECCCCHHHHhHh
Confidence 5578888899999999999764
No 89
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=35.49 E-value=23 Score=22.78 Aligned_cols=16 Identities=19% Similarity=0.553 Sum_probs=13.5
Q ss_pred EEEEEEeCChhhHHHH
Q psy12257 34 VALYMESLCPGCHQFI 49 (145)
Q Consensus 34 V~vyyESlCPd~~~Fi 49 (145)
|+||.-+-||.|++-.
T Consensus 1 v~ly~~~~Cp~C~~ak 16 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTK 16 (72)
T ss_pred CEEEeCCCCHHHHHHH
Confidence 5789999999999754
No 90
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=35.48 E-value=67 Score=26.48 Aligned_cols=112 Identities=14% Similarity=0.155 Sum_probs=61.8
Q ss_pred cCCeeEEEEEEEeCChhhHHHHHHhhHHHHHhccCc--eeEEEEeeeeceeecCC-------------------------
Q psy12257 28 RIVKAKVALYMESLCPGCHQFIKHQLYPVFMKYSNY--IQLDLIPFGNARHTKNS------------------------- 80 (145)
Q Consensus 28 ~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~l~d~--idl~lvPfG~a~~~~~~------------------------- 80 (145)
...+|+|+||..=.||.|--. ...|-.+...+.+. +++..-||=-.-.....
T Consensus 2 ~~~~i~I~v~sD~vCPwC~ig-~~rL~ka~~~~~~~~~v~i~w~pf~l~p~~~~~g~~~~~~l~~k~g~~~~~~~~~~~~ 80 (225)
T COG2761 2 NPMKIEIDVFSDVVCPWCYIG-KRRLEKALAEYPQEVRVEIRWRPFELDPDLPPEGLDRKEYLAQKYGISEEQKAAHARL 80 (225)
T ss_pred CCceEEEEEEeCCcCchhhcC-HHHHHHHHHhcCcceeEEEEecccccCCCCCcccccHHHHHHHHhCccHHHHHHHHHH
Confidence 457899999999999999643 23455566666654 44455565422111100
Q ss_pred -------CCCcceeeeCChhhhccChHhHHHhhhhcCCCcc-ccceeeeeccccCC-----CCchhhHHHHhhhcCCC
Q psy12257 81 -------DGTWEFKCQHGEPECFGNLYLACATHLLQASRPK-HLIRYYNCMASASS-----FSIEKDVKQVTEMGRVS 145 (145)
Q Consensus 81 -------~g~~~f~CQHG~~EC~gN~~~aCal~~~~~~~~~-~~l~fI~Cm~~~~~-----~~~~~~~~~c~~~~~l~ 145 (145)
+..+.|.= .-=..|.+.||-+.+.. ..+. .+..|+.=+.+.+. -..+.-.-++|+.+||.
T Consensus 81 ~~~~~~~Gi~~~f~~----~~~~~nt~~Ah~l~~~A-~~~G~~~~~~~~~lf~AyF~eg~nI~D~dVL~diA~~~GLD 153 (225)
T COG2761 81 EELAEEEGIDFNFDA----IVPAPNTLDAHRLIKAA-ELQGKAQDRFLEALFEAYFEEGRNIGDEDVLADIAEEVGLD 153 (225)
T ss_pred HHhhHhcCcccchhh----ccCCCchHHHHHHHHHH-HHhCchHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHhCCC
Confidence 00011100 00234667888766652 2223 46666665555442 23345578888888874
No 91
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=35.33 E-value=1.3e+02 Score=19.67 Aligned_cols=22 Identities=9% Similarity=0.149 Sum_probs=17.7
Q ss_pred cCCeeEEEEEEEeCChhhHHHH
Q psy12257 28 RIVKAKVALYMESLCPGCHQFI 49 (145)
Q Consensus 28 ~~~kV~V~vyyESlCPd~~~Fi 49 (145)
+..++-|-.||-+-||.|+.+.
T Consensus 10 ~~~~~vlv~f~a~wC~~C~~~~ 31 (96)
T cd02956 10 STQVPVVVDFWAPRSPPSKELL 31 (96)
T ss_pred cCCCeEEEEEECCCChHHHHHH
Confidence 3366778889999999999764
No 92
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=33.69 E-value=49 Score=27.41 Aligned_cols=38 Identities=24% Similarity=0.654 Sum_probs=25.0
Q ss_pred CeeEEEEEEEeCChhhHHHHHHhhHHHHHhccCceeEEEEeee
Q psy12257 30 VKAKVALYMESLCPGCHQFIKHQLYPVFMKYSNYIQLDLIPFG 72 (145)
Q Consensus 30 ~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~l~d~idl~lvPfG 72 (145)
.++-|-.||.+-||.|+.+. |++..+.+...+++++..
T Consensus 166 ~k~~Lv~F~AswCp~C~~~~-----P~L~~la~~yg~~Vi~Vs 203 (271)
T TIGR02740 166 KKSGLFFFFKSDCPYCHQQA-----PILQAFEDRYGIEVLPVS 203 (271)
T ss_pred CCeEEEEEECCCCccHHHHh-----HHHHHHHHHcCcEEEEEe
Confidence 56778889999999999753 444444333346666653
No 93
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=33.64 E-value=74 Score=20.91 Aligned_cols=31 Identities=10% Similarity=0.311 Sum_probs=20.5
Q ss_pred CeeEEEEEEEeCChhhHHHHHHhhHHHHHhcc
Q psy12257 30 VKAKVALYMESLCPGCHQFIKHQLYPVFMKYS 61 (145)
Q Consensus 30 ~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~l~ 61 (145)
.+.-+-.||-+-||.|+.+.. .+..+...+.
T Consensus 17 ~~~~~v~f~a~wC~~C~~~~~-~~~~~~~~~~ 47 (104)
T cd02997 17 EKHVLVMFYAPWCGHCKKMKP-EFTKAATELK 47 (104)
T ss_pred CCCEEEEEECCCCHHHHHhCH-HHHHHHHHHh
Confidence 446688899999999998853 2333333343
No 94
>KOG2613|consensus
Probab=33.05 E-value=34 Score=31.10 Aligned_cols=20 Identities=15% Similarity=0.627 Sum_probs=15.9
Q ss_pred CChhhHHHHHHhhHHHHHhc
Q psy12257 41 LCPGCHQFIKHQLYPVFMKY 60 (145)
Q Consensus 41 lCPd~~~Fi~~qL~P~~~~l 60 (145)
+||||.|+-..+.|.+.-.+
T Consensus 139 ~C~DC~R~eakdfW~a~vQv 158 (502)
T KOG2613|consen 139 QCPDCARVEAKDFWRALVQV 158 (502)
T ss_pred cCchhhhhhhhHHHHHHHHH
Confidence 59999999888888765443
No 95
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=32.94 E-value=1.8e+02 Score=20.71 Aligned_cols=30 Identities=7% Similarity=0.056 Sum_probs=22.6
Q ss_pred hcCCeeEEEEEEEeCChhhHHHHHHhhHHHHHhcc
Q psy12257 27 LRIVKAKVALYMESLCPGCHQFIKHQLYPVFMKYS 61 (145)
Q Consensus 27 ~~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~l~ 61 (145)
....++-|-.||-+-|+.|+.+ .|.|+++.
T Consensus 26 ~~~~~~vlV~FyA~WC~~Ck~l-----~p~~~~la 55 (113)
T cd03006 26 RTDAEVSLVMYYAPWDAQSQAA-----RQEFEQVA 55 (113)
T ss_pred ccCCCEEEEEEECCCCHHHHHH-----HHHHHHHH
Confidence 4667888999999999999964 45554443
No 96
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=32.72 E-value=1.2e+02 Score=21.05 Aligned_cols=20 Identities=25% Similarity=0.642 Sum_probs=17.2
Q ss_pred eeEEEEEEEeCChhhHHHHH
Q psy12257 31 KAKVALYMESLCPGCHQFIK 50 (145)
Q Consensus 31 kV~V~vyyESlCPd~~~Fi~ 50 (145)
|+-+-.||.+-||.|+++..
T Consensus 15 k~vlv~f~a~wC~~C~~~~~ 34 (125)
T cd02951 15 KPLLLLFSQPGCPYCDKLKR 34 (125)
T ss_pred CcEEEEEeCCCCHHHHHHHH
Confidence 67777889999999999864
No 97
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=32.60 E-value=32 Score=21.97 Aligned_cols=17 Identities=35% Similarity=0.727 Sum_probs=14.5
Q ss_pred EEEEEEEeCChhhHHHH
Q psy12257 33 KVALYMESLCPGCHQFI 49 (145)
Q Consensus 33 ~V~vyyESlCPd~~~Fi 49 (145)
++++|+-..||.|++-.
T Consensus 1 ~i~Ly~~~~~p~c~kv~ 17 (77)
T cd03040 1 KITLYQYKTCPFCCKVR 17 (77)
T ss_pred CEEEEEcCCCHHHHHHH
Confidence 47889999999999764
No 98
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=32.57 E-value=73 Score=22.11 Aligned_cols=18 Identities=22% Similarity=0.407 Sum_probs=14.7
Q ss_pred eeEEEEEEEeCChhhHHH
Q psy12257 31 KAKVALYMESLCPGCHQF 48 (145)
Q Consensus 31 kV~V~vyyESlCPd~~~F 48 (145)
+.-|-.||.+-||.|+.+
T Consensus 25 ~~vvv~F~a~~c~~C~~l 42 (113)
T cd02957 25 TRVVVHFYEPGFPRCKIL 42 (113)
T ss_pred CEEEEEEeCCCCCcHHHH
Confidence 566678999999999953
No 99
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=32.55 E-value=28 Score=24.50 Aligned_cols=16 Identities=31% Similarity=0.874 Sum_probs=13.9
Q ss_pred EEEEEeCChhhHHHHH
Q psy12257 35 ALYMESLCPGCHQFIK 50 (145)
Q Consensus 35 ~vyyESlCPd~~~Fi~ 50 (145)
.+|+--+||||.-|+.
T Consensus 5 ~lfgsn~Cpdca~a~e 20 (85)
T COG4545 5 KLFGSNLCPDCAPAVE 20 (85)
T ss_pred eeeccccCcchHHHHH
Confidence 6799999999998873
No 100
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=31.91 E-value=98 Score=27.60 Aligned_cols=21 Identities=14% Similarity=0.381 Sum_probs=18.2
Q ss_pred CCeeEEEEEEEeCChhhHHHH
Q psy12257 29 IVKAKVALYMESLCPGCHQFI 49 (145)
Q Consensus 29 ~~kV~V~vyyESlCPd~~~Fi 49 (145)
..+++|++|+-.-||+|.+-+
T Consensus 116 ~~~~~i~~f~~~~Cp~Cp~~v 136 (515)
T TIGR03140 116 NGPLHFETYVSLTCQNCPDVV 136 (515)
T ss_pred CCCeEEEEEEeCCCCCCHHHH
Confidence 468999999999999998643
No 101
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=30.03 E-value=71 Score=24.02 Aligned_cols=21 Identities=24% Similarity=0.270 Sum_probs=17.8
Q ss_pred CCeeEEEEEEEeCChhhHHHH
Q psy12257 29 IVKAKVALYMESLCPGCHQFI 49 (145)
Q Consensus 29 ~~kV~V~vyyESlCPd~~~Fi 49 (145)
..|+-|-.||-+-||.|++++
T Consensus 62 ~gk~vll~F~a~wC~~C~~~~ 82 (173)
T TIGR00385 62 QGKPVLLNVWASWCPPCRAEH 82 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHH
Confidence 467888888999999999875
No 102
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=29.83 E-value=1.7e+02 Score=19.42 Aligned_cols=20 Identities=15% Similarity=0.388 Sum_probs=16.2
Q ss_pred CCeeEEEEEEEeCChhhHHH
Q psy12257 29 IVKAKVALYMESLCPGCHQF 48 (145)
Q Consensus 29 ~~kV~V~vyyESlCPd~~~F 48 (145)
..++-+-.||-+-||.|+.+
T Consensus 17 ~~~~~~v~f~a~wC~~C~~~ 36 (101)
T cd03003 17 SGEIWFVNFYSPRCSHCHDL 36 (101)
T ss_pred CCCeEEEEEECCCChHHHHh
Confidence 34777888999999999954
No 103
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=29.05 E-value=1.6e+02 Score=19.91 Aligned_cols=22 Identities=5% Similarity=0.111 Sum_probs=17.4
Q ss_pred cCCeeEEEEEEEeCChhhHHHH
Q psy12257 28 RIVKAKVALYMESLCPGCHQFI 49 (145)
Q Consensus 28 ~~~kV~V~vyyESlCPd~~~Fi 49 (145)
...+.-+-.||-+-||.|+++.
T Consensus 16 ~~~~~vlv~F~a~wC~~C~~~~ 37 (108)
T cd02996 16 QSAELVLVNFYADWCRFSQMLH 37 (108)
T ss_pred hcCCEEEEEEECCCCHHHHhhH
Confidence 4456668889999999999864
No 104
>TIGR03399 RNA_3prim_cycl RNA 3'-phosphate cyclase. Members of this protein family are RNA 3'-phosphate cyclase (6.5.1.4), an enzyme whose function is conserved from E. coli to human. The modification this enzyme performs enables certain RNA ligations to occur, although the full biological roll for this enzyme is not fully described. This model separates this enzyme from a related protein, present only in eukaryotes, localized to the nucleolus, and involved in ribosomal modification.
Probab=28.77 E-value=1.6e+02 Score=25.25 Aligned_cols=63 Identities=11% Similarity=0.197 Sum_probs=48.1
Q ss_pred hhhcCCeeEEEEEEEeCChh--hHHHHHHhhHHHHHhccCceeEEEEeeeeceeecCCCCCcceeeeC
Q psy12257 25 SMLRIVKAKVALYMESLCPG--CHQFIKHQLYPVFMKYSNYIQLDLIPFGNARHTKNSDGTWEFKCQH 90 (145)
Q Consensus 25 ~~~~~~kV~V~vyyESlCPd--~~~Fi~~qL~P~~~~l~d~idl~lvPfG~a~~~~~~~g~~~f~CQH 90 (145)
+.....++.+++-.-+.-|- +.+|+++.+.|++.++.=.+++++.=.|-.- ...|...|.|++
T Consensus 105 l~f~~~p~~l~l~GgT~~~~sPsvDy~~~v~lP~l~~~G~~~~l~v~rRG~yP---~GGGeV~~~i~p 169 (326)
T TIGR03399 105 LLFANGPSRVTVSGGTDVPWAPPVDYLRNVFLPLLERMGIRAELELLRRGFYP---RGGGEVRLRVEP 169 (326)
T ss_pred HHhCCCCeEEEEEcccCCCCCCCHHHHHHHHHHHHHhCCCcEEEEEEeCCcCC---CCCEEEEEEEcc
Confidence 33467789999999998887 8999999999999988767899998777431 124456666665
No 105
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=27.76 E-value=1e+02 Score=21.08 Aligned_cols=29 Identities=14% Similarity=0.295 Sum_probs=20.2
Q ss_pred CeeEEEEEEEeCChhhHHHHHHhhHHHHHh
Q psy12257 30 VKAKVALYMESLCPGCHQFIKHQLYPVFMK 59 (145)
Q Consensus 30 ~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~ 59 (145)
.++.|-.||-+-||.|+.++. .|...+++
T Consensus 20 ~k~~vl~F~~~~C~~C~~~~~-~l~~~~~~ 48 (123)
T cd03011 20 GKPVLVYFWATWCPVCRFTSP-TVNQLAAD 48 (123)
T ss_pred CCEEEEEEECCcChhhhhhCh-HHHHHHhh
Confidence 377777888888999998853 34444444
No 106
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=27.37 E-value=42 Score=22.74 Aligned_cols=16 Identities=25% Similarity=0.474 Sum_probs=12.3
Q ss_pred EEEEEEEe-----CChhhHHH
Q psy12257 33 KVALYMES-----LCPGCHQF 48 (145)
Q Consensus 33 ~V~vyyES-----lCPd~~~F 48 (145)
+|.||..+ .||+|++-
T Consensus 9 ~vvvf~k~~~~~~~Cp~C~~a 29 (90)
T cd03028 9 PVVLFMKGTPEEPRCGFSRKV 29 (90)
T ss_pred CEEEEEcCCCCCCCCcHHHHH
Confidence 47778774 89999974
No 107
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=26.96 E-value=1.3e+02 Score=22.23 Aligned_cols=34 Identities=24% Similarity=0.423 Sum_probs=18.5
Q ss_pred EeCChhhHHHHHHhhHHHHHhccCceeEEEEeeee
Q psy12257 39 ESLCPGCHQFIKHQLYPVFMKYSNYIQLDLIPFGN 73 (145)
Q Consensus 39 ESlCPd~~~Fi~~qL~P~~~~l~d~idl~lvPfG~ 73 (145)
.|=||||++--- .+..++...++-..|-.+..|.
T Consensus 35 ~sWCPDC~~aep-~v~~~f~~~~~~~~lv~v~VG~ 68 (119)
T PF06110_consen 35 QSWCPDCVAAEP-VVEKAFKKAPENARLVYVEVGD 68 (119)
T ss_dssp -BSSHHHHHHHH-HHHHHHHH-STTEEEEEEE---
T ss_pred CcccHHHHHHHH-HHHHHHHhCCCCceEEEEEcCC
Confidence 467999997642 4445555666555555555554
No 108
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=25.73 E-value=1.8e+02 Score=21.17 Aligned_cols=39 Identities=21% Similarity=0.297 Sum_probs=26.9
Q ss_pred CeeEEEEEEEeCChhhHHHHHHhhHHHHHhccCceeEEEEee
Q psy12257 30 VKAKVALYMESLCPGCHQFIKHQLYPVFMKYSNYIQLDLIPF 71 (145)
Q Consensus 30 ~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~l~d~idl~lvPf 71 (145)
.|+-|-.|+-+-|| |+.=+- .|..+++++++. ++++|.+
T Consensus 22 Gk~vvl~fwatwC~-C~~e~p-~l~~l~~~~~~~-~~~vv~v 60 (152)
T cd00340 22 GKVLLIVNVASKCG-FTPQYE-GLEALYEKYKDR-GLVVLGF 60 (152)
T ss_pred CCEEEEEEEcCCCC-chHHHH-HHHHHHHHhcCC-CEEEEEe
Confidence 57778888999999 987764 566666666532 3555544
No 109
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=25.59 E-value=79 Score=21.03 Aligned_cols=24 Identities=21% Similarity=0.682 Sum_probs=17.2
Q ss_pred EEEEEEEeCChhhHHHHHHhhHHHHHhcc
Q psy12257 33 KVALYMESLCPGCHQFIKHQLYPVFMKYS 61 (145)
Q Consensus 33 ~V~vyyESlCPd~~~Fi~~qL~P~~~~l~ 61 (145)
.|-.||-+-||.|+.+ .|.|+++.
T Consensus 19 ~lv~f~a~wC~~C~~~-----~p~~~~l~ 42 (101)
T cd02994 19 WMIEFYAPWCPACQQL-----QPEWEEFA 42 (101)
T ss_pred EEEEEECCCCHHHHHH-----hHHHHHHH
Confidence 4778899999999975 44454443
No 110
>smart00594 UAS UAS domain.
Probab=24.96 E-value=75 Score=22.64 Aligned_cols=44 Identities=14% Similarity=0.097 Sum_probs=26.1
Q ss_pred cCCeeEEEEEEEeCChhhHHHHHHhhHHHHHhccCceeEEEEeeee
Q psy12257 28 RIVKAKVALYMESLCPGCHQFIKHQLYPVFMKYSNYIQLDLIPFGN 73 (145)
Q Consensus 28 ~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~l~d~idl~lvPfG~ 73 (145)
...|..+-.++-.-|++|+.|.++.|.- ..+.++++=++|.|+-
T Consensus 25 ~~~K~~lv~~~~~~c~~c~~~~r~vl~~--~~V~~~i~~~fv~~~~ 68 (122)
T smart00594 25 RQRRLLWLYLHSQDSPDSQVFNRDVLCN--EAVKSLIRENFIFWQV 68 (122)
T ss_pred hhcCCEEEEEeCCCCchHHHHHHHHccC--HHHHHHHHcCEEEEEe
Confidence 3345555555556799999999865533 2233444436777663
No 111
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=24.91 E-value=1e+02 Score=23.53 Aligned_cols=22 Identities=18% Similarity=0.277 Sum_probs=18.6
Q ss_pred CCeeEEEEEEEeCChhhHHHHH
Q psy12257 29 IVKAKVALYMESLCPGCHQFIK 50 (145)
Q Consensus 29 ~~kV~V~vyyESlCPd~~~Fi~ 50 (145)
..|+-|-.||-+-||.|++.+-
T Consensus 67 ~gk~vvv~FwatwC~~C~~e~p 88 (185)
T PRK15412 67 QGKPVLLNVWATWCPTCRAEHQ 88 (185)
T ss_pred CCCEEEEEEECCCCHHHHHHHH
Confidence 4678888899999999998864
No 112
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=24.80 E-value=54 Score=23.31 Aligned_cols=16 Identities=19% Similarity=0.538 Sum_probs=14.0
Q ss_pred EEEEEEeCChhhHHHH
Q psy12257 34 VALYMESLCPGCHQFI 49 (145)
Q Consensus 34 V~vyyESlCPd~~~Fi 49 (145)
|+||+-+-||.|++-.
T Consensus 1 i~iY~~~~C~~c~ka~ 16 (117)
T TIGR01617 1 IKVYGSPNCTTCKKAR 16 (117)
T ss_pred CEEEeCCCCHHHHHHH
Confidence 4789999999999865
No 113
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=24.71 E-value=1.6e+02 Score=21.47 Aligned_cols=21 Identities=14% Similarity=0.001 Sum_probs=14.8
Q ss_pred cCCeeEEEEEEEe--CChhhHHH
Q psy12257 28 RIVKAKVALYMES--LCPGCHQF 48 (145)
Q Consensus 28 ~~~kV~V~vyyES--lCPd~~~F 48 (145)
+.+.+.|-.||.. .||+|+.+
T Consensus 25 ~~~~~~v~~f~~~~~~cp~c~~i 47 (111)
T cd02965 25 AAGGDLVLLLAGDPVRFPEVLDV 47 (111)
T ss_pred hCCCCEEEEecCCcccCcchhhh
Confidence 4455566667777 69999854
No 114
>PRK13675 GTP cyclohydrolase; Provisional
Probab=24.66 E-value=1.2e+02 Score=25.94 Aligned_cols=24 Identities=13% Similarity=0.303 Sum_probs=19.1
Q ss_pred CeeEEEEEEEeCChhhHHHHHHhh
Q psy12257 30 VKAKVALYMESLCPGCHQFIKHQL 53 (145)
Q Consensus 30 ~kV~V~vyyESlCPd~~~Fi~~qL 53 (145)
..+.|+|.|.|+||=|+...+..+
T Consensus 145 ~~l~v~V~~~T~CPCS~~is~~~~ 168 (308)
T PRK13675 145 KEIGAEVVGMTACPCAQEMMKERA 168 (308)
T ss_pred EEEEEEEEEEEcChhhHHHHHHHH
Confidence 468899999999999888765433
No 115
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=24.53 E-value=1.2e+02 Score=23.08 Aligned_cols=21 Identities=14% Similarity=0.344 Sum_probs=16.3
Q ss_pred cCCeeEEEEEEEeCChhhHHH
Q psy12257 28 RIVKAKVALYMESLCPGCHQF 48 (145)
Q Consensus 28 ~~~kV~V~vyyESlCPd~~~F 48 (145)
...++-|-.||-+-||.|+.+
T Consensus 45 ~~~~~vvV~Fya~wC~~Ck~l 65 (152)
T cd02962 45 DKRVTWLVEFFTTWSPECVNF 65 (152)
T ss_pred cCCCEEEEEEECCCCHHHHHH
Confidence 335667888999999999954
No 116
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=24.48 E-value=38 Score=21.27 Aligned_cols=14 Identities=36% Similarity=0.764 Sum_probs=12.0
Q ss_pred EEEEEeCChhhHHH
Q psy12257 35 ALYMESLCPGCHQF 48 (145)
Q Consensus 35 ~vyyESlCPd~~~F 48 (145)
.+|+-..||+|++-
T Consensus 2 ~Ly~~~~~p~~~rv 15 (71)
T cd03037 2 KLYIYEHCPFCVKA 15 (71)
T ss_pred ceEecCCCcHhHHH
Confidence 58999999999964
No 117
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=24.13 E-value=1.7e+02 Score=20.55 Aligned_cols=19 Identities=11% Similarity=0.312 Sum_probs=13.3
Q ss_pred CeeEEEEE-EEeCChhhHHH
Q psy12257 30 VKAKVALY-MESLCPGCHQF 48 (145)
Q Consensus 30 ~kV~V~vy-yESlCPd~~~F 48 (145)
.++.+.|+ |-+-||.|+.+
T Consensus 21 ~~~~vvv~f~a~wC~~C~~~ 40 (113)
T cd02975 21 NPVDLVVFSSKEGCQYCEVT 40 (113)
T ss_pred CCeEEEEEeCCCCCCChHHH
Confidence 35556666 67899999854
No 118
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=24.11 E-value=1.1e+02 Score=23.55 Aligned_cols=28 Identities=11% Similarity=0.418 Sum_probs=19.8
Q ss_pred CCeeEEEEEEEeCChhhHHHHHHhhHHHH
Q psy12257 29 IVKAKVALYMESLCPGCHQFIKHQLYPVF 57 (145)
Q Consensus 29 ~~kV~V~vyyESlCPd~~~Fi~~qL~P~~ 57 (145)
..|+-|-.|+-+-||.|++.+- .+...+
T Consensus 73 ~gk~vvl~F~atwCp~C~~~lp-~l~~~~ 100 (189)
T TIGR02661 73 PGRPTLLMFTAPSCPVCDKLFP-IIKSIA 100 (189)
T ss_pred CCCEEEEEEECCCChhHHHHHH-HHHHHH
Confidence 3566777889999999997753 344443
No 119
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=23.81 E-value=86 Score=22.89 Aligned_cols=28 Identities=25% Similarity=0.243 Sum_probs=20.6
Q ss_pred cCCeeEEEEEEEeCChhhHHHHHHhhHHHHHhc
Q psy12257 28 RIVKAKVALYMESLCPGCHQFIKHQLYPVFMKY 60 (145)
Q Consensus 28 ~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~l 60 (145)
...++-|--||-+-||.|+ +|.|+++++
T Consensus 12 ~~~~~vVV~F~A~WCgpCk-----~m~P~le~l 39 (114)
T cd02954 12 EEEKVVVIRFGRDWDPVCM-----QMDEVLAKI 39 (114)
T ss_pred cCCCEEEEEEECCCChhHH-----HHHHHHHHH
Confidence 3567778889999999999 345555444
No 120
>cd00874 RNA_Cyclase_Class_II RNA 3' phosphate cyclase domain (class II). These proteins function as RNA cyclase to catalyze the ATP-dependent conversion of 3'-phosphate to a 2'.3'-cyclic phosphodiester at the end of RNA molecule. A conserved catalytic histidine residue is found in all members of this subfamily.
Probab=23.43 E-value=2.4e+02 Score=24.18 Aligned_cols=62 Identities=10% Similarity=0.135 Sum_probs=47.3
Q ss_pred hhcCCeeEEEEEEEeCChh--hHHHHHHhhHHHHHhccCceeEEEEeeeeceeecCCCCCcceeeeC
Q psy12257 26 MLRIVKAKVALYMESLCPG--CHQFIKHQLYPVFMKYSNYIQLDLIPFGNARHTKNSDGTWEFKCQH 90 (145)
Q Consensus 26 ~~~~~kV~V~vyyESlCPd--~~~Fi~~qL~P~~~~l~d~idl~lvPfG~a~~~~~~~g~~~f~CQH 90 (145)
.....++.|++-.-+.-|. +.+|+++.+.|++.++.-.+++++.=.|-.- ...|...|.|++
T Consensus 104 ~f~~~~~~l~l~GgT~~~~sPsvD~~~~v~lP~l~~~G~~~~l~v~rRG~yP---~GgGeV~~~v~p 167 (326)
T cd00874 104 LFADGPSTVTISGGTDVPWAPPIDYLRNVTLPLLERMGIEAELEVLRRGFYP---RGGGEVVLTVEP 167 (326)
T ss_pred hcCCCCEEEEEEcccCCCCCCCHHHHHHHHHHHHHhCCCcEEEEEEeCCcCC---CCCEEEEEEEec
Confidence 3467788999999988886 5999999999999988766888887777431 124556667765
No 121
>PHA02125 thioredoxin-like protein
Probab=23.31 E-value=68 Score=20.74 Aligned_cols=15 Identities=20% Similarity=0.654 Sum_probs=13.1
Q ss_pred EEEEEEeCChhhHHH
Q psy12257 34 VALYMESLCPGCHQF 48 (145)
Q Consensus 34 V~vyyESlCPd~~~F 48 (145)
|.+||-+-||.|+.+
T Consensus 2 iv~f~a~wC~~Ck~~ 16 (75)
T PHA02125 2 IYLFGAEWCANCKMV 16 (75)
T ss_pred EEEEECCCCHhHHHH
Confidence 678999999999964
No 122
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=22.62 E-value=1.5e+02 Score=22.83 Aligned_cols=18 Identities=28% Similarity=0.462 Sum_probs=13.9
Q ss_pred eeEEEEEEEeCChhhHHH
Q psy12257 31 KAKVALYMESLCPGCHQF 48 (145)
Q Consensus 31 kV~V~vyyESlCPd~~~F 48 (145)
++-|--||..-||.|+.+
T Consensus 84 ~~VVV~Fya~wc~~Ck~m 101 (175)
T cd02987 84 TTVVVHIYEPGIPGCAAL 101 (175)
T ss_pred cEEEEEEECCCCchHHHH
Confidence 356667889999999943
No 123
>PLN02412 probable glutathione peroxidase
Probab=22.61 E-value=1.6e+02 Score=22.14 Aligned_cols=32 Identities=22% Similarity=0.266 Sum_probs=24.6
Q ss_pred CeeEEEEEEEeCChhhHHHHHHhhHHHHHhccC
Q psy12257 30 VKAKVALYMESLCPGCHQFIKHQLYPVFMKYSN 62 (145)
Q Consensus 30 ~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~l~d 62 (145)
.|+-|-.|+-+-||.|++-+. .|...++++++
T Consensus 29 gk~vlv~f~a~~C~~c~~e~~-~l~~l~~~~~~ 60 (167)
T PLN02412 29 GKVLLIVNVASKCGLTDSNYK-ELNVLYEKYKE 60 (167)
T ss_pred CCEEEEEEeCCCCCChHHHHH-HHHHHHHHHhh
Confidence 577788888999999998653 56777777664
No 124
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=22.57 E-value=1.7e+02 Score=19.03 Aligned_cols=28 Identities=11% Similarity=0.376 Sum_probs=18.6
Q ss_pred EEEEEEEeCChhhHHHHHHhhHHHHHhcc
Q psy12257 33 KVALYMESLCPGCHQFIKHQLYPVFMKYS 61 (145)
Q Consensus 33 ~V~vyyESlCPd~~~Fi~~qL~P~~~~l~ 61 (145)
-+-.||-+-||.|+.+.. .+..+.+++.
T Consensus 19 ~lv~f~a~wC~~C~~~~p-~~~~~~~~~~ 46 (102)
T cd03005 19 HFVKFFAPWCGHCKRLAP-TWEQLAKKFN 46 (102)
T ss_pred EEEEEECCCCHHHHHhCH-HHHHHHHHHh
Confidence 566788999999998853 2433434443
No 125
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=21.97 E-value=1.1e+02 Score=21.58 Aligned_cols=20 Identities=10% Similarity=0.122 Sum_probs=15.4
Q ss_pred CCeeEEEEEEEeCChhhHHH
Q psy12257 29 IVKAKVALYMESLCPGCHQF 48 (145)
Q Consensus 29 ~~kV~V~vyyESlCPd~~~F 48 (145)
..+.-|-.||...||.|+.+
T Consensus 21 ~~~~vvV~f~a~~c~~C~~~ 40 (113)
T cd02989 21 SSERVVCHFYHPEFFRCKIM 40 (113)
T ss_pred CCCcEEEEEECCCCccHHHH
Confidence 34566777899999999954
No 126
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=21.68 E-value=2.4e+02 Score=18.26 Aligned_cols=20 Identities=20% Similarity=0.252 Sum_probs=16.7
Q ss_pred CeeEEEEEEEeCChhhHHHH
Q psy12257 30 VKAKVALYMESLCPGCHQFI 49 (145)
Q Consensus 30 ~kV~V~vyyESlCPd~~~Fi 49 (145)
++.-|-.||-+-|+.|+++.
T Consensus 14 ~~~v~v~f~~~~C~~C~~~~ 33 (97)
T cd02984 14 SKLLVLHFWAPWAEPCKQMN 33 (97)
T ss_pred CCEEEEEEECCCCHHHHHHh
Confidence 57778888999999999664
No 127
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=21.04 E-value=2.7e+02 Score=18.64 Aligned_cols=31 Identities=10% Similarity=0.111 Sum_probs=21.9
Q ss_pred CCeeEEEEEEEeCChhhHHHHHHhhHHHHHhc
Q psy12257 29 IVKAKVALYMESLCPGCHQFIKHQLYPVFMKY 60 (145)
Q Consensus 29 ~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~l 60 (145)
..++-+-.||-+-||.|+.+.. .|..+...+
T Consensus 14 ~~~~vlv~f~a~wC~~C~~~~p-~l~~l~~~~ 44 (104)
T cd03000 14 KEDIWLVDFYAPWCGHCKKLEP-VWNEVGAEL 44 (104)
T ss_pred cCCeEEEEEECCCCHHHHhhCh-HHHHHHHHH
Confidence 3566788899999999998764 444444444
No 128
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=20.78 E-value=68 Score=22.22 Aligned_cols=16 Identities=31% Similarity=0.540 Sum_probs=11.6
Q ss_pred EEEEEE-----eCChhhHHHH
Q psy12257 34 VALYME-----SLCPGCHQFI 49 (145)
Q Consensus 34 V~vyyE-----SlCPd~~~Fi 49 (145)
|.||.. +.||+|.+-.
T Consensus 14 Vvvf~kg~~~~~~Cp~C~~ak 34 (97)
T TIGR00365 14 VVLYMKGTPQFPQCGFSARAV 34 (97)
T ss_pred EEEEEccCCCCCCCchHHHHH
Confidence 566765 6799999754
No 129
>COG4665 FcbT2 TRAP-type mannitol/chloroaromatic compound transport system, small permease component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=20.14 E-value=65 Score=25.81 Aligned_cols=23 Identities=13% Similarity=0.203 Sum_probs=20.6
Q ss_pred hcCCeeEEEEEEEeCChhhHHHH
Q psy12257 27 LRIVKAKVALYMESLCPGCHQFI 49 (145)
Q Consensus 27 ~~~~kV~V~vyyESlCPd~~~Fi 49 (145)
..++.|+|+++|+++-|..|.++
T Consensus 71 ~~neHVRvDi~Y~~ls~R~qa~v 93 (182)
T COG4665 71 KQNEHVRVDIIYGSLSRRTQAWV 93 (182)
T ss_pred hcCCceEEEeeccccCHHHHHHH
Confidence 46689999999999999999886
No 130
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=20.04 E-value=2.1e+02 Score=22.30 Aligned_cols=39 Identities=15% Similarity=0.226 Sum_probs=27.2
Q ss_pred CeeEEEEEEEeCChhhHHHHHHhhHHHHHhccCceeEEEEee
Q psy12257 30 VKAKVALYMESLCPGCHQFIKHQLYPVFMKYSNYIQLDLIPF 71 (145)
Q Consensus 30 ~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~l~d~idl~lvPf 71 (145)
.||-|-+++-|.||.|..+ .+|...++++++. +|+++-|
T Consensus 25 GKvvLVvf~AS~C~~~~q~--~~L~~L~~~y~~~-gl~Vlg~ 63 (183)
T PRK10606 25 GNVLLIVNVASKCGLTPQY--EQLENIQKAWADQ-GFVVLGF 63 (183)
T ss_pred CCEEEEEEEeCCCCCcHHH--HHHHHHHHHHhhC-CeEEEEe
Confidence 5888999999999999753 3677777777542 3444433
Done!