RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12257
(145 letters)
>gnl|CDD|217437 pfam03227, GILT, Gamma interferon inducible lysosomal thiol
reductase (GILT). This family includes the two
characterized human gamma-interferon-inducible lysosomal
thiol reductase (GILT) sequences. It also contains
several other eukaryotic putative proteins with
similarity to GILT. The aligned region contains three
conserved cysteine residues. In addition, the two GILT
sequences possess a C-X(2)-C motif that is shared by
some of the other sequences in the family. This motif is
thought to be associated with disulphide bond reduction.
Length = 109
Score = 83.5 bits (207), Expect = 7e-22
Identities = 36/104 (34%), Positives = 48/104 (46%), Gaps = 7/104 (6%)
Query: 33 KVALYMESLCPGCHQFIKHQLYPVFMKY--SNYIQLDLIPFGNARHTKNSDGTWEFKCQH 90
+ LY ESLCP C +FI++QLYP + + L L+PFG AR D CQH
Sbjct: 2 NITLYYESLCPDCQKFIRNQLYPAWFDLDLLDITDLKLVPFGKAR---CVDDGSVCTCQH 58
Query: 91 GEPECFGNLYLACATHLLQASRPKHLIRYYNCMASASSFSIEKD 134
G EC N AC L K + + CM +++S
Sbjct: 59 GPEECKLNALQACVIETLP--NQKLQLPFIRCMQGKTNYSEGFK 100
>gnl|CDD|131785 TIGR02738, TrbB, type-F conjugative transfer system pilin
assembly thiol-disulfide isomerase TrbB. This protein
is part of a large group of proteins involved in
conjugative transfer of plasmid DNA, specifically the
F-type system. This protein has been predicted to
contain a thioredoxin fold, contains a conserved pair
of cysteines and has been shown to function as a thiol
disulfide isomerase by complementation of an Ecoli DsbA
defect. The protein is believed to be involved in pilin
assembly. The protein is closely related to TraF
(TIGR02739) which is somewhat longer, lacks the
cysteine motif and is apparently not functional as a
disulfide bond isomerase.
Length = 153
Score = 32.5 bits (74), Expect = 0.032
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 5/39 (12%)
Query: 33 KVALYMESLCPGCHQFIKHQLYPVFMKYSNYIQLDLIPF 71
+ + +S CP CHQF PV ++S L + F
Sbjct: 53 ALVFFYQSTCPYCHQFA-----PVLKRFSQQFGLPVYAF 86
>gnl|CDD|237484 PRK13728, PRK13728, conjugal transfer protein TrbB; Provisional.
Length = 181
Score = 30.8 bits (70), Expect = 0.17
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 33 KVALYMESLCPGCHQF 48
KV L+M+ CP CHQF
Sbjct: 72 KVVLFMQGHCPYCHQF 87
>gnl|CDD|221601 pfam12489, ARA70, Nuclear coactivator. This domain family is found
in eukaryotes, and is typically between 127 and 138
amino acids in length. This family is ARA70, a nuclear
coactivator which interacts with peroxisome
proliferator-activated receptor gamma (PPARgamma) to
regulate transcription and the addition of the PPARgamma
ligand (prostaglandin J2) enhances this interaction.
Length = 131
Score = 27.9 bits (62), Expect = 1.2
Identities = 13/33 (39%), Positives = 15/33 (45%), Gaps = 3/33 (9%)
Query: 101 LACATHLLQASRPKHLIRYYNCMASASSFSIEK 133
L H L S IR N +S+S FSIE
Sbjct: 56 LKDLEHWLLKS---QQIRKRNSNSSSSQFSIEL 85
>gnl|CDD|152038 pfam11602, NTPase_P4, ATPase P4 of dsRNA bacteriophage phi-12. P4
is a packaging motor which is involved in the packaging
of phi-12 genome into preformed capsids using ATP. P4 is
located at the vertices of the icosahedral capsid. ATP
drives RNA translocation through cooperative
conformational changes.
Length = 320
Score = 28.4 bits (63), Expect = 1.5
Identities = 13/37 (35%), Positives = 17/37 (45%)
Query: 79 NSDGTWEFKCQHGEPECFGNLYLACATHLLQASRPKH 115
+ DG + + GE F L TH LQ S P+H
Sbjct: 250 DVDGVSQTLTRTGEGRIFNAAPLQRLTHTLQTSYPEH 286
>gnl|CDD|151357 pfam10910, DUF2744, Protein of unknown function (DUF2744). This
is a viral family of proteins with unknown function.
Length = 125
Score = 26.7 bits (59), Expect = 3.0
Identities = 8/16 (50%), Positives = 8/16 (50%)
Query: 70 PFGNARHTKNSDGTWE 85
PF RH NS G W
Sbjct: 69 PFRGERHWLNSAGRWV 84
>gnl|CDD|197224 cd09126, PLDc_C_DEXD_like, C-terminal putative phospholipase D-like
domain of uncharacterized prokaryotic HKD family
nucleases fused to DEAD/DEAH box helicases. C-terminal
putative phospholipase D (PLD)-like domain of
uncharacterized prokaryotic HKD family nucleases fused
to a DEAD/DEAH box helicase domain. All members of this
subfamily are uncharacterized. In addition to the
helicase-like region, members of this family also
contain a PLD-like domain in the C-terminal region,
which is characterized by a variant HKD (H-x-K-x(4)-D
motif, where x represents any amino acid residue) motif.
Due to the lack of key residues related to PLD activity
in the variant HKD motif, members of this subfamily are
most unlikely to carry PLD activity.
Length = 126
Score = 26.5 bits (59), Expect = 3.8
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 15 YLLGKKVEEVSMLRIVKAKVA 35
LLG E S++R+ A++A
Sbjct: 101 NLLGYSNAEDSIIRLKSAEIA 121
>gnl|CDD|234946 PRK01355, PRK01355, azoreductase; Reviewed.
Length = 199
Score = 26.2 bits (58), Expect = 6.1
Identities = 10/21 (47%), Positives = 13/21 (61%), Gaps = 2/21 (9%)
Query: 66 LDLIPFGNARHTKNSDGTWEF 86
L P+G+ HT +GTWEF
Sbjct: 139 LGWYPWGS--HTNYLEGTWEF 157
>gnl|CDD|173729 cd06617, PKc_MKK3_6, Catalytic domain of the dual-specificity
Protein Kinases, MAP kinase kinases 3 and 6. Protein
kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6
subfamily, catalytic (c) domain. PKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine or tyrosine residues on protein
substrates. The MKK3 and MKK6 subfamily is part of a
larger superfamily that includes the catalytic domains
of other protein serine/threonine kinases, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. The mitogen-activated protein (MAP) kinase
signaling pathways are important mediators of cellular
responses to extracellular signals. The pathways involve
a triple kinase core cascade comprising the MAP kinase
(MAPK), which is phosphorylated and activated by a MAPK
kinase (MAPKK or MKK), which itself is phosphorylated
and activated by a MAPK kinase kinase (MAPKKK or MKKK).
MKK3 and MKK6 are dual-specificity PKs that
phosphorylate and activate their downstream target, p38
MAPK, on specific threonine and tyrosine residues.
MKK3/6 plays roles in the regulation of cell cycle
progression, cytokine- and stress-induced apoptosis,
oncogenic transformation, and adult tissue regeneration.
In addition, MKK6 plays a critical role in osteoclast
survival in inflammatory disease while MKK3 is
associated with tumor invasion, progression, and poor
patient survival in glioma.
Length = 283
Score = 25.8 bits (57), Expect = 9.2
Identities = 13/47 (27%), Positives = 19/47 (40%)
Query: 35 ALYMESLCPGCHQFIKHQLYPVFMKYSNYIQLDLIPFGNARHTKNSD 81
L E P F+ L + + NY +L PF +KN+D
Sbjct: 227 QLPAEKFSPEFQDFVNKCLKKNYKERPNYPELLQHPFFELHLSKNTD 273
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.135 0.422
Gapped
Lambda K H
0.267 0.0794 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,883,011
Number of extensions: 565562
Number of successful extensions: 538
Number of sequences better than 10.0: 1
Number of HSP's gapped: 536
Number of HSP's successfully gapped: 12
Length of query: 145
Length of database: 10,937,602
Length adjustment: 88
Effective length of query: 57
Effective length of database: 7,034,450
Effective search space: 400963650
Effective search space used: 400963650
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 54 (24.5 bits)