RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy12257
         (145 letters)



>1kte_A Thioltransferase; redox-active center, electron transport,
          acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB:
          1jhb_A 1b4q_A*
          Length = 105

 Score = 26.4 bits (59), Expect = 1.7
 Identities = 9/50 (18%), Positives = 19/50 (38%), Gaps = 3/50 (6%)

Query: 28 RIVKAKVALYMESLCPGCHQFIKHQL--YPVFMKYSNYIQLDLIPFGNAR 75
          +I   KV ++++  CP C +  +  L   P       ++ +      N  
Sbjct: 8  KIQPGKVVVFIKPTCPFCRK-TQELLSQLPFKEGLLEFVDITATSDTNEI 56


>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET:
          GSH; 2.10A {Populus tremula x populus tremuloides} PDB:
          1z7p_A 1z7r_A
          Length = 116

 Score = 26.1 bits (58), Expect = 2.8
 Identities = 11/47 (23%), Positives = 22/47 (46%), Gaps = 2/47 (4%)

Query: 29 IVKAKVALYMESLCPGCHQFIKHQLYPVFMKYSNYIQLDLIPFGNAR 75
             A V ++ ++ C  C++ +K  L  V   Y   ++LD +  G+  
Sbjct: 17 ASSAPVVVFSKTYCGYCNR-VKQLLTQVGASY-KVVELDELSDGSQL 61


>3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm,
          electron transport, redox-active center, transport;
          HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A*
          2jac_A*
          Length = 118

 Score = 24.6 bits (54), Expect = 9.2
 Identities = 10/50 (20%), Positives = 21/50 (42%), Gaps = 4/50 (8%)

Query: 29 IVKAKVALYMESLCPGCH---QFIKHQLYPVFMKYSNYIQLDLIPFGNAR 75
          I + ++ +  ++ CP CH     +  +L     K    +QL+ +  G   
Sbjct: 22 IAENEIFVASKTYCPYCHAALNTLFEKLKVPRSKV-LVLQLNDMKEGADI 70


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 25.6 bits (55), Expect = 9.8
 Identities = 19/117 (16%), Positives = 34/117 (29%), Gaps = 41/117 (35%)

Query: 13  FRYL--------LGKKVEEVSM----LRIVKAKVALYMESLCPGCHQFIKHQLYPVFMKY 60
           + ++          +++    M     R ++ K  +  +S        I + L      Y
Sbjct: 474 YSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQK--IRHDSTAWNASGSILNTLQ-QLKFY 530

Query: 61  SNYIQLDLIPFGNARHTKNSDGTWE--------FKCQHGEPECFGNLYLACATHLLQ 109
             YI              N D  +E        F  +  E     NL  +  T LL+
Sbjct: 531 KPYI------------CDN-DPKYERLVNAILDFLPKIEE-----NLICSKYTDLLR 569


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.323    0.135    0.422 

Gapped
Lambda     K      H
   0.267   0.0684    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,106,286
Number of extensions: 108302
Number of successful extensions: 284
Number of sequences better than 10.0: 1
Number of HSP's gapped: 284
Number of HSP's successfully gapped: 10
Length of query: 145
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 60
Effective length of database: 4,328,508
Effective search space: 259710480
Effective search space used: 259710480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 52 (23.9 bits)