RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12257
         (145 letters)



>d351ca_ a.3.1.1 (A:) Cytochrome c551 {Pseudomonas aeruginosa
          [TaxId: 287]}
          Length = 82

 Score = 26.0 bits (56), Expect = 0.72
 Identities = 5/23 (21%), Positives = 8/23 (34%)

Query: 35 ALYMESLCPGCHQFIKHQLYPVF 57
           L+    C  CH      + P +
Sbjct: 5  VLFKNKGCVACHAIDTKMVGPAY 27


>d1cora_ a.3.1.1 (A:) Cytochrome c551 {Pseudomonas stutzeri
          [TaxId: 316]}
          Length = 82

 Score = 25.0 bits (53), Expect = 1.7
 Identities = 7/25 (28%), Positives = 10/25 (40%)

Query: 35 ALYMESLCPGCHQFIKHQLYPVFMK 59
          AL+    C  CH      + P F +
Sbjct: 5  ALFKSKPCAACHSIDAKLVGPAFKE 29


>d1t8sa_ c.56.2.1 (A:) AMP nucleosidase {Escherichia coli [TaxId:
           562]}
          Length = 477

 Score = 25.7 bits (56), Expect = 2.3
 Identities = 10/55 (18%), Positives = 13/55 (23%), Gaps = 4/55 (7%)

Query: 70  PFGNARHTKNSDGTWEFKCQHGEPECFGNLYLACATHLLQASRPKHLIRYYNCMA 124
               A H   +DG        G     G          L   RP   +   +C  
Sbjct: 251 HQMPAWHLITADGQGITLVNIG----VGPSNAKTICDHLAVLRPDVWLMIGHCGG 301


>d1ktea_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Pig
          (Sus scrofa) [TaxId: 9823]}
          Length = 105

 Score = 23.1 bits (49), Expect = 9.8
 Identities = 8/49 (16%), Positives = 17/49 (34%), Gaps = 1/49 (2%)

Query: 29 IVKAKVALYMESLCPGCHQFIKH-QLYPVFMKYSNYIQLDLIPFGNARH 76
          I   KV ++++  CP C +  +     P       ++ +      N   
Sbjct: 9  IQPGKVVVFIKPTCPFCRKTQELLSQLPFKEGLLEFVDITATSDTNEIQ 57


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.135    0.422 

Gapped
Lambda     K      H
   0.267   0.0453    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 534,270
Number of extensions: 22849
Number of successful extensions: 80
Number of sequences better than 10.0: 1
Number of HSP's gapped: 80
Number of HSP's successfully gapped: 7
Length of query: 145
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 68
Effective length of database: 1,350,386
Effective search space: 91826248
Effective search space used: 91826248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 49 (23.3 bits)