BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12258
(171 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 118 bits (295), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 58/138 (42%), Positives = 79/138 (57%), Gaps = 1/138 (0%)
Query: 1 MCDTCGKSFFSSTALKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCE 60
C CGKSF S L H R H G KPY C CG+ F DL H+ + H+ K ++C
Sbjct: 23 ACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRT-HTGEKPYKCP 81
Query: 61 YCGKDFARKYSLVVHRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFCPVCNK 120
CGK F+++ +L H+R HTGE+ Y C C K+F ++L+ H+R HTGEKP+ CP C K
Sbjct: 82 ECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGK 141
Query: 121 MFRVRSDMKRHLNTHNVD 138
F ++ H TH +
Sbjct: 142 SFSREDNLHTHQRTHTGE 159
Score = 116 bits (290), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 58/135 (42%), Positives = 74/135 (54%), Gaps = 1/135 (0%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEY 61
C CGKSF L H R H G KPY C CG+ F Q +L+ H+ + H+ K + C
Sbjct: 52 CPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRT-HTGEKPYACPE 110
Query: 62 CGKDFARKYSLVVHRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFCPVCNKM 121
CGK F++ L H+R HTGE+ Y+C C K+F L H+R HTGEKP+ CP C K
Sbjct: 111 CGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKS 170
Query: 122 FRVRSDMKRHLNTHN 136
F R + H TH
Sbjct: 171 FSRRDALNVHQRTHT 185
Score = 99.8 bits (247), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 73/131 (55%), Gaps = 1/131 (0%)
Query: 8 SFFSSTALKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFA 67
S F S++ + G KPY C CG+ F + L H+ + H+ K ++C CGK F+
Sbjct: 2 SEFGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRT-HTGEKPYKCPECGKSFS 60
Query: 68 RKYSLVVHRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFCPVCNKMFRVRSD 127
K L H+R HTGE+ Y+C C K+F + L+ H+R HTGEKP+ CP C K F +
Sbjct: 61 DKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAH 120
Query: 128 MKRHLNTHNVD 138
++ H TH +
Sbjct: 121 LRAHQRTHTGE 131
Score = 99.8 bits (247), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 48/110 (43%), Positives = 65/110 (59%), Gaps = 1/110 (0%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEY 61
C CGKSF L+ H R H G KPY C CG+ F Q L+ H+ + H+ K ++C
Sbjct: 80 CPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRT-HTGEKPYKCPE 138
Query: 62 CGKDFARKYSLVVHRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEK 111
CGK F+R+ +L H+R HTGE+ Y+C C K+F L H+R HTG+K
Sbjct: 139 CGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGKK 188
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
Length = 87
Score = 84.0 bits (206), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 51/82 (62%)
Query: 55 KAFQCEYCGKDFARKYSLVVHRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHF 114
K ++C CGK F++ +L H+R HTGE+ Y+C C K+F SS LQ H+R HTGEKP+
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYK 62
Query: 115 CPVCNKMFRVRSDMKRHLNTHN 136
CP C K F + RH TH
Sbjct: 63 CPECGKSFSRSDHLSRHQRTHQ 84
Score = 73.6 bits (179), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEY 61
C CGKSF S+ L+ H R H G KPY C CG+ F Q DL+ H+ + H+ K ++C
Sbjct: 7 CPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRT-HTGEKPYKCPE 65
Query: 62 CGKDFARKYSLVVHRRIHTGER 83
CGK F+R L H+R H ++
Sbjct: 66 CGKSFSRSDHLSRHQRTHQNKK 87
Score = 73.6 bits (179), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Query: 26 KPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYSLVVHRRIHTGERNY 85
KPY C CG+ F Q +L+ H+ + H+ K ++C CGK F++ L H+R HTGE+ Y
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRT-HTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPY 61
Query: 86 QCEFCHKAFRASSYLQNHRRIHTGEK 111
+C C K+F S +L H+R H +K
Sbjct: 62 KCPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 37/57 (64%)
Query: 82 ERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFCPVCNKMFRVRSDMKRHLNTHNVD 138
E+ Y+C C K+F SS LQ H+R HTGEKP+ CP C K F SD+++H TH +
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGE 58
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 77.4 bits (189), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 46/68 (67%)
Query: 55 KAFQCEYCGKDFARKYSLVVHRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHF 114
K F C++CG+ F + Y+L++H R HT ER Y C+ CHKAFR +L++HR IH+ EKP
Sbjct: 16 KEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFK 75
Query: 115 CPVCNKMF 122
C C K F
Sbjct: 76 CQECGKGF 83
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 1 MCDTCGKSFFSSTALKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCE 60
+C CG+ F S L +H R H +PY C++C + FR+ L+ H+ +HS K F+C+
Sbjct: 19 ICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRY-IHSKEKPFKCQ 77
Query: 61 YCGKDFARKYSLVVHRRIH 79
CGK F + +L VH+ +H
Sbjct: 78 ECGKGFCQSRTLAVHKTLH 96
Score = 56.2 bits (134), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 26 KPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYSLVVHRRIHTGERNY 85
K + C+ CGRHF + +L H+ + H+D + + C+ C K F R+ L HR IH+ E+ +
Sbjct: 16 KEFICKFCGRHFTKSYNLLIHERT-HTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPF 74
Query: 86 QCEFCHKAFRASSYLQNHRRIH 107
+C+ C K F S L H+ +H
Sbjct: 75 KCQECGKGFCQSRTLAVHKTLH 96
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 33/57 (57%)
Query: 82 ERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFCPVCNKMFRVRSDMKRHLNTHNVD 138
++ + C+FC + F S L H R HT E+P+ C +C+K FR + ++ H H+ +
Sbjct: 15 KKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKE 71
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 74.3 bits (181), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 60/111 (54%), Gaps = 3/111 (2%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKAS--LHSDVKAFQC 59
C TC K F S LKVHNR H G KP+ C CG+ + + +L H+A ++ + F C
Sbjct: 10 CPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTC 69
Query: 60 EYCGKDFARKYSLVVHRRIHTGERNYQCEFCHKAFRASSYLQNHR-RIHTG 109
C + F R+ L +H HTGE Y+C C + F LQ+H ++H+G
Sbjct: 70 SVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 52 SDVKAFQCEYCGKDFARKYSLVVHRRIHTGERNYQCEFCHKA-FRASSYLQNHRR--IHT 108
S +C C K F KY L VH R HTGE+ ++C C K FR + L++ R ++
Sbjct: 3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNR 62
Query: 109 GEKPHFCPVCNKMFRVRSDMKRHLNTHN 136
E+ C VC + FR R +++ H+ +H
Sbjct: 63 SEQVFTCSVCQETFRRRMELRLHMVSHT 90
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 73.2 bits (178), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 28 YGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYSLVVHRRIHTGERNYQC 87
+ C++CG+ F++ L H +HSD + + C+YCGK F +K + H IHTGE+ ++C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLL-IHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKC 60
Query: 88 EFCHKAFRASSYLQNHRRIHTG 109
+ C KAF SS L H R HTG
Sbjct: 61 QVCGKAFSQSSNLITHSRKHTG 82
Score = 72.8 bits (177), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 45/81 (55%)
Query: 56 AFQCEYCGKDFARKYSLVVHRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFC 115
+F C+ CGK F R +L H IH+ R Y C++C K F S ++ H IHTGEKPH C
Sbjct: 1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKC 60
Query: 116 PVCNKMFRVRSDMKRHLNTHN 136
VC K F S++ H H
Sbjct: 61 QVCGKAFSQSSNLITHSRKHT 81
Score = 69.3 bits (168), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEY 61
C CGKSF S+ L H +H +PY C+ CG+ F Q D+K H +H+ K +C+
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKH-TFIHTGEKPHKCQV 62
Query: 62 CGKDFARKYSLVVHRRIHTG 81
CGK F++ +L+ H R HTG
Sbjct: 63 CGKAFSQSSNLITHSRKHTG 82
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 34/64 (53%)
Query: 84 NYQCEFCHKAFRASSYLQNHRRIHTGEKPHFCPVCNKMFRVRSDMKRHLNTHNVDARQYL 143
++ C+ C K+F+ SS L H IH+ +P+ C C K F +SDMK+H H +
Sbjct: 1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKC 60
Query: 144 TVTG 147
V G
Sbjct: 61 QVCG 64
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 58/107 (54%), Gaps = 5/107 (4%)
Query: 5 CGKSFFSSTALKVHNRVHLGLKPYGCEV--CGRHFRQWGDLKYHKASLHSDVKAFQCEYC 62
C K +F + L++H+R H G KPY C+ C R F + LK H+ H+ VK FQC+ C
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRR-HTGVKPFQCKTC 72
Query: 63 GKDFARKYSLVVHRRIHTGERNYQCEF--CHKAFRASSYLQNHRRIH 107
+ F+R L H R HTGE+ + C + C K F S L H +H
Sbjct: 73 QRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 69.3 bits (168), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 49/85 (57%), Gaps = 4/85 (4%)
Query: 58 QCEYCGKDFARKYSLVVHRRIHTGERNYQCEF--CHKAFRASSYLQNHRRIHTGEKPHFC 115
+C GK F KY LV H R+HTGE+ + C F C K F S L+ H+R HTGEKP C
Sbjct: 64 ECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKC 123
Query: 116 PV--CNKMFRVRSDMKRHLNTHNVD 138
C++ F SD K+H++ H D
Sbjct: 124 EFEGCDRRFANSSDRKKHMHVHTSD 148
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 51/112 (45%), Gaps = 29/112 (25%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEY 61
C GKSF + L H RVH G KP+ C G
Sbjct: 65 CPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPG--------------------------- 97
Query: 62 CGKDFARKYSLVVHRRIHTGERNYQCEF--CHKAFRASSYLQNHRRIHTGEK 111
CGK FAR +L +H+R HTGE+ ++CEF C + F SS + H +HT +K
Sbjct: 98 CGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDK 149
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 45/86 (52%), Gaps = 11/86 (12%)
Query: 62 CGKDFARKYSLVVHRRI-HTG---ERNYQC--EFCH---KAFRASSYLQNHRRIHTGEKP 112
C + F+ + LV H + H G + N+ C E C K+F+A L NH R+HTGEKP
Sbjct: 31 CDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKP 90
Query: 113 HFCPV--CNKMFRVRSDMKRHLNTHN 136
CP C K+F ++K H TH
Sbjct: 91 FPCPFPGCGKIFARSENLKIHKRTHT 116
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 58/108 (53%), Gaps = 8/108 (7%)
Query: 33 CGRHFRQWGDLKYHKASLHS-DVKAFQCEYCGKDFARKYSLVVHRRIHTGERNYQCEF-- 89
C + FR ++ H LH+ + C CGK F L H+ +HTGE+ +QC F
Sbjct: 13 CTKMFRDNSAMRKH---LHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEG 69
Query: 90 CHKAFRASSYLQNHRRIHTGEKPHFCPV--CNKMFRVRSDMKRHLNTH 135
C K F L+ H RIHTG++P+ CP CNK F +++K H+ TH
Sbjct: 70 CGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 117
Score = 67.0 bits (162), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 62/111 (55%), Gaps = 6/111 (5%)
Query: 5 CGKSFFSSTALKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEY--C 62
C K F ++A++ H H G + + C CG+ F + LK H+ +H+ K FQC + C
Sbjct: 13 CTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQL-VHTGEKPFQCTFEGC 70
Query: 63 GKDFARKYSLVVHRRIHTGERNYQCEF--CHKAFRASSYLQNHRRIHTGEK 111
GK F+ ++L H RIHTG+R Y C F C+K F S+ L++H H K
Sbjct: 71 GKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAK 121
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Query: 62 CGKDFARKYSLVVHRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFCPV--CN 119
C K F ++ H H G R + C C KAF SS L+ H+ +HTGEKP C C
Sbjct: 13 CTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCG 71
Query: 120 KMFRVRSDMKRHLNTHNVDARQYL 143
K F + +++ H+ H D R Y+
Sbjct: 72 KRFSLDFNLRTHVRIHTGD-RPYV 94
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 46/82 (56%)
Query: 58 QCEYCGKDFARKYSLVVHRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFCPV 117
+CE CGK F+RK L H R HTG + Y+C+ C A SS L H RIH+ E+P C +
Sbjct: 10 KCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQI 69
Query: 118 CNKMFRVRSDMKRHLNTHNVDA 139
C R S + HL +H D+
Sbjct: 70 CPYASRNSSQLTVHLRSHTGDS 91
Score = 64.3 bits (155), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 27 PYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYSLVVHRRIHTGERNYQ 86
P+ CEVCG+ F + LK H H+ VK ++C+ C A SL H RIH+ ER ++
Sbjct: 8 PHKCEVCGKCFSRKDKLKTH-MRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFK 66
Query: 87 CEFCHKAFRASSYLQNHRRIHTGE 110
C+ C A R SS L H R HTG+
Sbjct: 67 CQICPYASRNSSQLTVHLRSHTGD 90
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 85 YQCEFCHKAFRASSYLQNHRRIHTGEKPHFCPVCNKMFRVRSDMKRHLNTHNVDARQY 142
++CE C K F L+ H R HTG KP+ C C+ S + +HL H+ D R +
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHS-DERPF 65
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
Length = 90
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 42/76 (55%)
Query: 60 EYCGKDFARKYSLVVHRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFCPVCN 119
E C + F+R L H RIHTG++ +QC C + F S +L H R HTGEKP C +C
Sbjct: 10 ESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 69
Query: 120 KMFRVRSDMKRHLNTH 135
+ F + KRH H
Sbjct: 70 RKFARSDERKRHTKIH 85
Score = 64.3 bits (155), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 26 KPYGCEV--CGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYSLVVHRRIHTGER 83
+PY C V C R F + DL H +H+ K FQC C ++F+R L H R HTGE+
Sbjct: 3 RPYACPVESCDRRFSRSADLTRH-IRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 84 NYQCEFCHKAFRASSYLQNHRRIHTGEK 111
+ C+ C + F S + H +IH +K
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 56.2 bits (134), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 3 DTCGKSFFSSTALKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYC 62
++C + F S L H R+H G KP+ C +C R+F + L H H+ K F C+ C
Sbjct: 10 ESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH-IRTHTGEKPFACDIC 68
Query: 63 GKDFARKYSLVVHRRIHTGERN 84
G+ FAR H +IH +++
Sbjct: 69 GRKFARSDERKRHTKIHLRQKD 90
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 25/45 (55%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYH 46
C C ++F S L H R H G KP+ C++CGR F + + K H
Sbjct: 37 CRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 81
Score = 26.9 bits (58), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLK 26
CD CG+ F S K H ++HL K
Sbjct: 65 CDICGRKFARSDERKRHTKIHLRQK 89
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 42/76 (55%)
Query: 60 EYCGKDFARKYSLVVHRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFCPVCN 119
E C + F+R L H RIHTG++ +QC C + F S +L H R HTGEKP C +C
Sbjct: 10 ESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 69
Query: 120 KMFRVRSDMKRHLNTH 135
+ F + KRH H
Sbjct: 70 RKFARSDERKRHTKIH 85
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 26 KPYGCEV--CGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYSLVVHRRIHTGER 83
+PY C V C R F + +L H +H+ K FQC C ++F+R L H R HTGE+
Sbjct: 3 RPYACPVESCDRRFSRSAELTRH-IRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 84 NYQCEFCHKAFRASSYLQNHRRIHTGEK 111
+ C+ C + F S + H +IH +K
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 56.6 bits (135), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 3 DTCGKSFFSSTALKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYC 62
++C + F S L H R+H G KP+ C +C R+F + L H H+ K F C+ C
Sbjct: 10 ESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH-IRTHTGEKPFACDIC 68
Query: 63 GKDFARKYSLVVHRRIHTGERN 84
G+ FAR H +IH +++
Sbjct: 69 GRKFARSDERKRHTKIHLRQKD 90
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 25/45 (55%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYH 46
C C ++F S L H R H G KP+ C++CGR F + + K H
Sbjct: 37 CRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 81
Score = 26.9 bits (58), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLK 26
CD CG+ F S K H ++HL K
Sbjct: 65 CDICGRKFARSDERKRHTKIHLRQK 89
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 42/76 (55%)
Query: 60 EYCGKDFARKYSLVVHRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFCPVCN 119
E C + F+R L H RIHTG++ +QC C + F S +L H R HTGEKP C +C
Sbjct: 10 ESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 69
Query: 120 KMFRVRSDMKRHLNTH 135
+ F + KRH H
Sbjct: 70 RKFARSDERKRHTKIH 85
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 26 KPYGCEV--CGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYSLVVHRRIHTGER 83
+PY C V C R F + +L H +H+ K FQC C ++F+R L H R HTGE+
Sbjct: 3 RPYACPVESCDRRFSRSDELTRH-IRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 84 NYQCEFCHKAFRASSYLQNHRRIHTGEK 111
+ C+ C + F S + H +IH +K
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 56.6 bits (135), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 3 DTCGKSFFSSTALKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYC 62
++C + F S L H R+H G KP+ C +C R+F + L H H+ K F C+ C
Sbjct: 10 ESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH-IRTHTGEKPFACDIC 68
Query: 63 GKDFARKYSLVVHRRIHTGERN 84
G+ FAR H +IH +++
Sbjct: 69 GRKFARSDERKRHTKIHLRQKD 90
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 25/45 (55%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYH 46
C C ++F S L H R H G KP+ C++CGR F + + K H
Sbjct: 37 CRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 81
Score = 26.9 bits (58), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLK 26
CD CG+ F S K H ++HL K
Sbjct: 65 CDICGRKFARSDERKRHTKIHLRQK 89
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 43/76 (56%)
Query: 60 EYCGKDFARKYSLVVHRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFCPVCN 119
E C + F++ SL H RIHTG++ +QC C + F S +L H R HTGEKP C +C
Sbjct: 10 ESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 69
Query: 120 KMFRVRSDMKRHLNTH 135
+ F + KRH H
Sbjct: 70 RKFARSDERKRHTKIH 85
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 26 KPYGCEV--CGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYSLVVHRRIHTGER 83
+PY C V C R F Q G L H +H+ K FQC C ++F+R L H R HTGE+
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRH-IRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 84 NYQCEFCHKAFRASSYLQNHRRIHTGEK 111
+ C+ C + F S + H +IH +K
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 57.0 bits (136), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 3 DTCGKSFFSSTALKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYC 62
++C + F S +L H R+H G KP+ C +C R+F + L H H+ K F C+ C
Sbjct: 10 ESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH-IRTHTGEKPFACDIC 68
Query: 63 GKDFARKYSLVVHRRIHTGERN 84
G+ FAR H +IH +++
Sbjct: 69 GRKFARSDERKRHTKIHLRQKD 90
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 25/45 (55%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYH 46
C C ++F S L H R H G KP+ C++CGR F + + K H
Sbjct: 37 CRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 81
Score = 26.6 bits (57), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLK 26
CD CG+ F S K H ++HL K
Sbjct: 65 CDICGRKFARSDERKRHTKIHLRQK 89
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
Length = 87
Score = 67.0 bits (162), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 42/76 (55%)
Query: 60 EYCGKDFARKYSLVVHRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFCPVCN 119
E C + F+R L H RIHTG++ +QC C + F S +L H R HTGEKP C +C
Sbjct: 9 ESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 68
Query: 120 KMFRVRSDMKRHLNTH 135
+ F + KRH H
Sbjct: 69 RKFARSDERKRHTKIH 84
Score = 60.5 bits (145), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Query: 26 KPYGCEV--CGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYSLVVHRRIHTGER 83
+PY C V C R F + +L H +H+ K FQC C ++F+R L H R HTGE+
Sbjct: 2 RPYACPVESCDRRFSRSDELTRH-IRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 60
Query: 84 NYQCEFCHKAFRASSYLQNHRRIH 107
+ C+ C + F S + H +IH
Sbjct: 61 PFACDICGRKFARSDERKRHTKIH 84
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 3 DTCGKSFFSSTALKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYC 62
++C + F S L H R+H G KP+ C +C R+F + L H H+ K F C+ C
Sbjct: 9 ESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH-IRTHTGEKPFACDIC 67
Query: 63 GKDFARKYSLVVHRRIH 79
G+ FAR H +IH
Sbjct: 68 GRKFARSDERKRHTKIH 84
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 25/45 (55%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYH 46
C C ++F S L H R H G KP+ C++CGR F + + K H
Sbjct: 36 CRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 80
Score = 26.6 bits (57), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 2 CDTCGKSFFSSTALKVHNRVHL 23
CD CG+ F S K H ++HL
Sbjct: 64 CDICGRKFARSDERKRHTKIHL 85
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 67.0 bits (162), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 42/76 (55%)
Query: 60 EYCGKDFARKYSLVVHRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFCPVCN 119
E C + F+R L H RIHTG++ +QC C + F S +L H R HTGEKP C +C
Sbjct: 10 ESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 69
Query: 120 KMFRVRSDMKRHLNTH 135
+ F + KRH H
Sbjct: 70 RKFARSDERKRHTKIH 85
Score = 60.1 bits (144), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Query: 26 KPYGCEV--CGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYSLVVHRRIHTGER 83
+PY C V C R F + +L H +H+ K FQC C ++F+R L H R HTGE+
Sbjct: 3 RPYACPVESCDRRFSRSDELTRH-IRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 84 NYQCEFCHKAFRASSYLQNHRRIH 107
+ C+ C + F S + H +IH
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 3 DTCGKSFFSSTALKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYC 62
++C + F S L H R+H G KP+ C +C R+F + L H H+ K F C+ C
Sbjct: 10 ESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH-IRTHTGEKPFACDIC 68
Query: 63 GKDFARKYSLVVHRRIH 79
G+ FAR H +IH
Sbjct: 69 GRKFARSDERKRHTKIH 85
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 25/45 (55%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYH 46
C C ++F S L H R H G KP+ C++CGR F + + K H
Sbjct: 37 CRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 81
Score = 26.2 bits (56), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 2 CDTCGKSFFSSTALKVHNRVHL 23
CD CG+ F S K H ++HL
Sbjct: 65 CDICGRKFARSDERKRHTKIHL 86
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
Length = 90
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 42/76 (55%)
Query: 60 EYCGKDFARKYSLVVHRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFCPVCN 119
E C + F+ +L H RIHTG++ +QC C + F S +L H R HTGEKP C +C
Sbjct: 10 ESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 69
Query: 120 KMFRVRSDMKRHLNTH 135
+ F + KRH H
Sbjct: 70 RKFARSDERKRHTKIH 85
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 26 KPYGCEV--CGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYSLVVHRRIHTGER 83
+PY C V C R F +L H +H+ K FQC C ++F+R L H R HTGE+
Sbjct: 3 RPYACPVESCDRRFSDSSNLTRH-IRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 84 NYQCEFCHKAFRASSYLQNHRRIHTGEK 111
+ C+ C + F S + H +IH +K
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 57.4 bits (137), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 3 DTCGKSFFSSTALKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYC 62
++C + F S+ L H R+H G KP+ C +C R+F + L H H+ K F C+ C
Sbjct: 10 ESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH-IRTHTGEKPFACDIC 68
Query: 63 GKDFARKYSLVVHRRIHTGERN 84
G+ FAR H +IH +++
Sbjct: 69 GRKFARSDERKRHTKIHLRQKD 90
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 25/45 (55%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYH 46
C C ++F S L H R H G KP+ C++CGR F + + K H
Sbjct: 37 CRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 81
Score = 26.6 bits (57), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLK 26
CD CG+ F S K H ++HL K
Sbjct: 65 CDICGRKFARSDERKRHTKIHLRQK 89
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 63.9 bits (154), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 63/122 (51%), Gaps = 11/122 (9%)
Query: 33 CGRHFRQWGDLKYHKAS--LHSDVKAFQCEYCG-----KDFARKYSLVVHRRIHTGERNY 85
C + F L +H S +H + K F C + G + F +Y LVVH R HTGE+ +
Sbjct: 9 CSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPH 68
Query: 86 QCEF--CHKAFRASSYLQNHRRIHTGEKPHFCP--VCNKMFRVRSDMKRHLNTHNVDARQ 141
+C F C K++ L+ H R HTGEKP+ C C+K F SD +H N + + +
Sbjct: 69 KCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKP 128
Query: 142 YL 143
Y+
Sbjct: 129 YV 130
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 58/133 (43%), Gaps = 32/133 (24%)
Query: 7 KSFFSSTALKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDF 66
+ F + L VH R H G KP+ C E C K +
Sbjct: 47 RPFKAQYMLVVHMRRHTGEKPHKCTF---------------------------EGCRKSY 79
Query: 67 ARKYSLVVHRRIHTGERNYQCEF--CHKAF-RASSYLQNHRRIHTGEKPHFC--PVCNKM 121
+R +L H R HTGE+ Y CE C KAF AS ++ R H+ EKP+ C P C K
Sbjct: 80 SRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKR 139
Query: 122 FRVRSDMKRHLNT 134
+ S +++H+ T
Sbjct: 140 YTDPSSLRKHVKT 152
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 63.5 bits (153), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 41/76 (53%)
Query: 60 EYCGKDFARKYSLVVHRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFCPVCN 119
E C + F++K +L H RIHTG++ +QC C + F + L H R HTGEKP C +C
Sbjct: 10 ESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICG 69
Query: 120 KMFRVRSDMKRHLNTH 135
+ F RH H
Sbjct: 70 RKFATLHTRTRHTKIH 85
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 26 KPYGCEV--CGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYSLVVHRRIHTGER 83
+PY C V C R F Q +L H +H+ K FQC C ++F+++ SL H R HTGE+
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTH-IRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEK 61
Query: 84 NYQCEFCHKAFRASSYLQNHRRIHTGEK 111
+ C+ C + F H +IH +K
Sbjct: 62 PFACDICGRKFATLHTRTRHTKIHLRQK 89
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 3 DTCGKSFFSSTALKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYC 62
++C + F T L H R+H G KP+ C +C R+F Q L H H+ K F C+ C
Sbjct: 10 ESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAH-IRTHTGEKPFACDIC 68
Query: 63 GKDFARKYSLVVHRRIHTGERN 84
G+ FA ++ H +IH +++
Sbjct: 69 GRKFATLHTRTRHTKIHLRQKD 90
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGCEVCGRHF 37
C C ++F +L H R H G KP+ C++CGR F
Sbjct: 37 CRICMRNFSQQASLNAHIRTHTGEKPFACDICGRKF 72
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
Length = 90
Score = 62.8 bits (151), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 41/76 (53%)
Query: 60 EYCGKDFARKYSLVVHRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFCPVCN 119
E C + F++K +L H RIHTG++ +QC C + F + L H R HTGEKP C +C
Sbjct: 10 ESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICG 69
Query: 120 KMFRVRSDMKRHLNTH 135
+ F RH H
Sbjct: 70 RKFATLHTRDRHTKIH 85
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 3 DTCGKSFFSSTALKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYC 62
++C + F T L H R+H G KP+ C +C R+F Q L H H+ K F C+ C
Sbjct: 10 ESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQH-IRTHTGEKPFACDIC 68
Query: 63 GKDFARKYSLVVHRRIHTGERN 84
G+ FA ++ H +IH +++
Sbjct: 69 GRKFATLHTRDRHTKIHLRQKD 90
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 26 KPYGCEV--CGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYSLVVHRRIHTGER 83
+PY C V C R F Q +L H +H+ K FQC C ++F++ L H R HTGE+
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTH-IRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEK 61
Query: 84 NYQCEFCHKAFRASSYLQNHRRIHTGEK 111
+ C+ C + F H +IH +K
Sbjct: 62 PFACDICGRKFATLHTRDRHTKIHLRQK 89
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 21/36 (58%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGCEVCGRHF 37
C C ++F T L H R H G KP+ C++CGR F
Sbjct: 37 CRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRKF 72
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Zinc Finger Protein 24
Length = 72
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/54 (53%), Positives = 37/54 (68%)
Query: 55 KAFQCEYCGKDFARKYSLVVHRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHT 108
K + C CGK F+R LV H+R+HTGE+ Y+C C KAF +S L NH+RIHT
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 30/55 (54%)
Query: 82 ERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFCPVCNKMFRVRSDMKRHLNTHN 136
E+ Y C C KAF SS L H+R+HTGEKP+ C C K F S + H H
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 26 KPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYSLVVHRRIHT 80
KPYGC CG+ F + L H+ +H+ K ++C CGK F++ L+ H+RIHT
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQ-RVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 26/46 (56%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHK 47
C CGK+F S+ L H RVH G KPY C CG+ F Q L H+
Sbjct: 17 CVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQ 62
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain
Of Zinc Finger Protein 435
Length = 77
Score = 60.1 bits (144), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 38/60 (63%)
Query: 53 DVKAFQCEYCGKDFARKYSLVVHRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKP 112
+ + ++C+ CGK F+ L HRR HTGE+ Y+C+ C KAF S+L H R+HTG P
Sbjct: 15 ERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 31/54 (57%)
Query: 83 RNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFCPVCNKMFRVRSDMKRHLNTHN 136
R Y+C+ C K+F SS L HRR HTGEKP+ C C K F RS + H H
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHT 70
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 26/45 (57%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYH 46
CD CGKSF S+ L H R H G KPY C+ CG+ F Q L H
Sbjct: 21 CDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGH 65
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 28 YGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYSLVVHRRIHTG 81
Y C+ CG+ F DL H+ + H+ K ++C+ CGK F ++ L+ H R+HTG
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRT-HTGEKPYKCDECGKAFIQRSHLIGHHRVHTG 71
Score = 31.2 bits (69), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKP 27
CD CGK+F + L H+RVH G P
Sbjct: 49 CDECGKAFIQRSHLIGHHRVHTGSGP 74
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains
Of Human Zinc Finger Protein 297b
Length = 110
Score = 59.7 bits (143), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 48 ASLHSDVKAFQCEYCGKDFARKYSLVVHRRIHTGERNYQCEFCHKAFRASSYLQNHRRIH 107
+S S K + C+ CGK F K H +H G R Y C C K F+ +L H +IH
Sbjct: 2 SSGSSGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 60
Query: 108 TGEKPHFCPVCNKMFRVRSDMKRHLNT 134
TG KP+ C +C K F R RH+ +
Sbjct: 61 TGIKPYECNICAKRFMWRDSFHRHVTS 87
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 5 CGKSFFSSTALKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGK 64
CGKSF + H +HLGL+PYGC VCG+ F+ L H +H+ +K ++C C K
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGH-MKIHTGIKPYECNICAK 73
Query: 65 DFARKYSLVVHRRIHTGERNYQ 86
F + S HR + + ++Y+
Sbjct: 74 RFMWRDSF--HRHVTSCTKSYE 93
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 80 TGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFCPVCNKMFRVRSDMKRHLNTHN 136
+G++ Y C+ C K+F S H +H G +P+ C VC K F+++ + H+ H
Sbjct: 6 SGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHT 61
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGCEVCGRHFRQWGD 42
C CGK F L H ++H G+KPY C +C + F W D
Sbjct: 40 CGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRF-MWRD 79
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 35/58 (60%)
Query: 55 KAFQCEYCGKDFARKYSLVVHRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKP 112
K ++C+ C F K +L H+ +HTGE+ Y+C C F + L+ H RIH+GEKP
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 26 KPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYSLVVHRRIHTGER 83
KPY C+ C FR G+L HK ++H+ K ++C CG F R +L H RIH+GE+
Sbjct: 16 KPYKCDRCQASFRYKGNLASHK-TVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEK 72
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 33/55 (60%)
Query: 82 ERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFCPVCNKMFRVRSDMKRHLNTHN 136
++ Y+C+ C +FR L +H+ +HTGEKP+ C +C F +++K H H+
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHS 69
Score = 43.1 bits (100), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVK 55
CD C SF L H VH G KPY C +CG F + +LK H +HS K
Sbjct: 20 CDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTH-TRIHSGEK 72
Score = 30.0 bits (66), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKP 27
C+ CG F LK H R+H G KP
Sbjct: 48 CNICGAQFNRPANLKTHTRIHSGEKP 73
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 89
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 45/103 (43%), Gaps = 27/103 (26%)
Query: 5 CGKSFFSSTALKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGK 64
CGK++ S+ LK H R H G KPY C+ G CG
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDG---------------------------CGW 45
Query: 65 DFARKYSLVVHRRIHTGERNYQCEFCHKAFRASSYLQNHRRIH 107
FAR L H R HTG R +QC+ C +AF S +L H + H
Sbjct: 46 KFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 43/83 (51%), Gaps = 10/83 (12%)
Query: 59 CEY--CGKDFARKYSLVVHRRIHTGERNYQCEF--CHKAFRASSYLQNHRRIHTGEKPHF 114
C+Y CGK + + L H R HTGE+ Y C++ C F S L H R HTG +P
Sbjct: 8 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQ 67
Query: 115 CPVCNKMFRVRSD-----MKRHL 132
C C++ F RSD MKRH
Sbjct: 68 CQKCDRAF-SRSDHLALHMKRHF 89
Score = 35.0 bits (79), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 84 NYQCEF--CHKAFRASSYLQNHRRIHTGEKPHFCPV--CNKMFRVRSDMKRHLNTHN 136
+ C++ C K + SS+L+ H R HTGEKP+ C C F ++ RH H
Sbjct: 5 THTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHT 61
Score = 32.7 bits (73), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 21/44 (47%)
Query: 3 DTCGKSFFSSTALKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYH 46
D CG F S L H R H G +P+ C+ C R F + L H
Sbjct: 41 DGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALH 84
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 90
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 45/103 (43%), Gaps = 27/103 (26%)
Query: 5 CGKSFFSSTALKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGK 64
CGK++ S+ LK H R H G KPY C+ G CG
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDG---------------------------CGW 46
Query: 65 DFARKYSLVVHRRIHTGERNYQCEFCHKAFRASSYLQNHRRIH 107
FAR L H R HTG R +QC+ C +AF S +L H + H
Sbjct: 47 KFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 89
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 44/90 (48%), Gaps = 10/90 (11%)
Query: 52 SDVKAFQCEY--CGKDFARKYSLVVHRRIHTGERNYQCEF--CHKAFRASSYLQNHRRIH 107
S C+Y CGK + + L H R HTGE+ Y C++ C F S L H R H
Sbjct: 2 SRTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKH 61
Query: 108 TGEKPHFCPVCNKMFRVRSD-----MKRHL 132
TG +P C C++ F RSD MKRH
Sbjct: 62 TGHRPFQCQKCDRAF-SRSDHLALHMKRHF 90
Score = 35.0 bits (79), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 84 NYQCEF--CHKAFRASSYLQNHRRIHTGEKPHFCPV--CNKMFRVRSDMKRHLNTHN 136
+ C++ C K + SS+L+ H R HTGEKP+ C C F ++ RH H
Sbjct: 6 THTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHT 62
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 21/44 (47%)
Query: 3 DTCGKSFFSSTALKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYH 46
D CG F S L H R H G +P+ C+ C R F + L H
Sbjct: 42 DGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALH 85
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 33/54 (61%)
Query: 82 ERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFCPVCNKMFRVRSDMKRHLNTH 135
ER + C FC K +R +S L HRR H G +P CP C K FR +S++ RHL H
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%)
Query: 1 MCDTCGKSFFSSTALKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYH 46
C+ CGK++ ++ L H R HLG +P C CG+ FR ++ H
Sbjct: 6 FCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRH 51
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 26/53 (49%)
Query: 55 KAFQCEYCGKDFARKYSLVVHRRIHTGERNYQCEFCHKAFRASSYLQNHRRIH 107
+ F C +CGK + L HRR H G R C C K FR S + H ++H
Sbjct: 3 RPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 29.6 bits (65), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 26 KPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYSLVVHRRIH 79
+P+ C CG+ +R L H+ + H + C CGK F + + H ++H
Sbjct: 3 RPFFCNFCGKTYRDASGLSRHRRA-HLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 44/84 (52%), Gaps = 10/84 (11%)
Query: 59 CEY--CGKDFARKYSLVVHRRIHTGERNYQC--EFCHKAFRASSYLQNHRRIHTGEKPHF 114
C+Y C K + + L H R HTGE+ Y+C E C F S L H R HTG KP
Sbjct: 18 CDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQ 77
Query: 115 CPVCNKMFRVRSD-----MKRHLN 133
C VCN+ F RSD MKRH N
Sbjct: 78 CGVCNRSF-SRSDHLALHMKRHQN 100
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 5 CGKSFFSSTALKVHNRVHLGLKPYGC--EVCGRHFRQWGDLKYHKASLHSDVKAFQCEYC 62
C K + S+ LK H R H G KPY C E C F + +L H H+ K FQC C
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRK-HTGAKPFQCGVC 81
Query: 63 GKDFARKYSLVVHRRIH 79
+ F+R L +H + H
Sbjct: 82 NRSFSRSDHLALHMKRH 98
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345
In Zinc Finger Protein 278
Length = 95
Score = 53.1 bits (126), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDV-KAFQCE 60
C+ CGK F L H H G KPY C VCG F++ + YH S V K + C+
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 61 YCGKDFARKYSLVVH-RRIHTG 81
CGK F+R L H +++H+G
Sbjct: 70 SCGKGFSRPDHLNGHIKQVHSG 91
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Query: 30 CEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYSLVVHRRIHTGE--RNYQC 87
CE+CG+ FR L HK S HS K + C CG F RK + H R H G + Y C
Sbjct: 10 CEICGKIFRDVYHLNRHKLS-HSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYIC 68
Query: 88 EFCHKAFRASSYLQNH-RRIHTG 109
+ C K F +L H +++H+G
Sbjct: 69 QSCGKGFSRPDHLNGHIKQVHSG 91
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 32/57 (56%)
Query: 80 TGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFCPVCNKMFRVRSDMKRHLNTHN 136
+G CE C K FR +L H+ H+GEKP+ CPVC F+ + M H+ +H+
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHD 59
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 39/86 (45%), Gaps = 6/86 (6%)
Query: 52 SDVKAFQCEYCGKDFARKYSLVVHRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGE- 110
S CE CGK F Y L H+ H+GE+ Y C C F+ + H R H G
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSV 62
Query: 111 -KPHFCPVCNKMFRVRSDMKRHLNTH 135
KP+ C C K F R D HLN H
Sbjct: 63 GKPYICQSCGKGFS-RPD---HLNGH 84
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
Length = 190
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 76/174 (43%), Gaps = 25/174 (14%)
Query: 5 CGKSFFSSTALKVHNRVHLGLKPYGC--EVCGRHFRQWGDLKYHKASLHSDVKAFQCEYC 62
CG ++ + L+ H H G KP+ C E C + F L H + H+ K F C+
Sbjct: 20 CGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLT-HTGEKNFTCDSD 78
Query: 63 GKD--FARKYSLVVH-RRIHTGER-NYQCEF--CHKAFRASSYLQNHRRIHTGEKPHFCP 116
G D F K ++ H R H + Y C F C KAF+ + L+ H+ HT + P+ CP
Sbjct: 79 GCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECP 138
Query: 117 --VCNKMFRVRSDMKRHLNTHNVDARQYLTVTGSQTGAPIKKEPKQECNGDYWS 168
C+K F + S +KRH H G P KK+ G W+
Sbjct: 139 HEGCDKRFSLPSRLKRHEKVH--------------AGYPCKKDDSCSFVGKTWT 178
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 3 DTCGKSFFSSTALKVHNRVHLGLKPYGC--EVCGRHFRQWGDLKYHK 47
+ CGK+F LKVH H PY C E C + F LK H+
Sbjct: 110 ENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHE 156
>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
Length = 92
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 62 CGKDFARKYSLVVHRRIHTGERNYQC--EFCHKAFRASSYLQNHRRIHTGEKPHFCPV-- 117
CG + + + L H HTGE+ + C E C K F + +L H HTGEK C
Sbjct: 11 CGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 70
Query: 118 CNKMFRVRSDMKRHLNT-HNV 137
C+ F +++MK+H N HN+
Sbjct: 71 CDLRFTTKANMKKHFNRFHNI 91
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Query: 54 VKAFQCEYCGKDFARKYSLVVHRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPH 113
+K FQC C ++F+R L H R HTGE+ + C+ C + F S + HR I H
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQ-----H 55
Query: 114 FCPV 117
P+
Sbjct: 56 ILPI 59
Score = 46.2 bits (108), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 29/53 (54%)
Query: 85 YQCEFCHKAFRASSYLQNHRRIHTGEKPHFCPVCNKMFRVRSDMKRHLNTHNV 137
+QC C + F S +L H R HTGEKP C +C + F + KRH + ++
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHI 56
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 27/50 (54%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLH 51
C C ++F S L H R H G KP+ C++CGR F + + K H+ H
Sbjct: 6 CRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH 55
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 25 LKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYSLVVHRRI 78
+KP+ C +C R+F + L H + H+ K F C+ CG+ FAR HR I
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRT-HTGEKPFACDICGRKFARSDERKRHRDI 53
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 29/50 (58%)
Query: 58 QCEYCGKDFARKYSLVVHRRIHTGERNYQCEFCHKAFRASSYLQNHRRIH 107
+C YCGK F Y L +H R HTGE+ Y+CEFC A + L+ H H
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 31/55 (56%)
Query: 81 GERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFCPVCNKMFRVRSDMKRHLNTH 135
G + +C +C K FR++ YL H R HTGEKP+ C C ++ ++ HL H
Sbjct: 1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 24/45 (53%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYH 46
C CGK F S+ L +H R H G KPY CE C Q L+YH
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYH 51
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 30 CEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYSLVVHRRIH 79
C CG+ FR L H + H+ K ++CE+C A+K SL H H
Sbjct: 7 CSYCGKFFRSNYYLNIHLRT-HTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
Length = 73
Score = 46.6 bits (109), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 29/53 (54%)
Query: 56 AFQCEYCGKDFARKYSLVVHRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHT 108
A E C + F+R L H RIHTG++ +QC C + F S +L H R HT
Sbjct: 21 ACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 19 NRVHLGLKPYGCEV--CGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYSLVVHR 76
N V ++PY C V C R F + +L H +H+ K FQC C ++F+R L H
Sbjct: 11 NYVVPKMRPYACPVESCDRRFSRSDELTRH-IRIHTGQKPFQCRICMRNFSRSDHLTTHI 69
Query: 77 RIHT 80
R HT
Sbjct: 70 RTHT 73
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 83 RNYQC--EFCHKAFRASSYLQNHRRIHTGEKPHFCPVCNKMFRVRSDMKRHLNTH 135
R Y C E C + F S L H RIHTG+KP C +C + F + H+ TH
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 3 DTCGKSFFSSTALKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYH 46
++C + F S L H R+H G KP+ C +C R+F + L H
Sbjct: 25 ESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH 68
>pdb|2CT1|A Chain A, Solution Structure Of The Zinc Finger Domain Of
Transcriptional Repressor Ctcf Protein
Length = 77
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 19 NRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSD-VKAFQCEYCGKDFARKYSLVVHRR 77
R H G KPY C +C F Q G +K H H++ V F C +C ARK L VH R
Sbjct: 7 GRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLR 66
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 77 RIHTGERNYQCEFCHKAFRASSYLQNH-RRIHTGEKPHF-CPVCNKMFRVRSDMKRHL 132
R H+GE+ Y+C CH F S ++ H + HT F CP C+ + +SD+ HL
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHL 65
Score = 30.0 bits (66), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Query: 105 RIHTGEKPHFCPVCNKMFRVRSDMKRHL---NTHNV 137
R H+GEKP+ C +C+ F MK H+ +T NV
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENV 43
>pdb|2EP0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
528- 560) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 24/31 (77%)
Query: 82 ERNYQCEFCHKAFRASSYLQNHRRIHTGEKP 112
E+ Y+C+ CHK+FR S L H+RIHTGEKP
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
Score = 35.0 bits (79), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 55 KAFQCEYCGKDFARKYSLVVHRRIHTGER 83
K ++C+ C K F SL VH+RIHTGE+
Sbjct: 11 KPYKCDVCHKSFRYGSSLTVHQRIHTGEK 39
Score = 34.7 bits (78), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYG 29
CD C KSF ++L VH R+H G KP G
Sbjct: 15 CDVCHKSFRYGSSLTVHQRIHTGEKPSG 42
Score = 26.6 bits (57), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 110 EKPHFCPVCNKMFRVRSDMKRHLNTHN 136
EKP+ C VC+K FR S + H H
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIHT 36
>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Domain
In Complex With Kaiso Binding Site Dna
pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Protein
In Complex With Methylated Cpg Site Dna
Length = 133
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 36/78 (46%)
Query: 57 FQCEYCGKDFARKYSLVVHRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFCP 116
+ C C + + SL H IH+ E+ Y C +C K F + Y H HTGE+ + C
Sbjct: 23 YICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCL 82
Query: 117 VCNKMFRVRSDMKRHLNT 134
C K F M H+ +
Sbjct: 83 ACGKSFINYQFMSSHIKS 100
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 28 YGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYSLVVHRRIHTGERNYQC 87
Y C VC R + L+ H ++HS K + C YC K F H HTGER YQC
Sbjct: 23 YICIVCKRSYVCLTSLRRH-FNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQC 81
Query: 88 EFCHKAFRASSYLQNHRRIHTGEKP 112
C K+F ++ +H + + P
Sbjct: 82 LACGKSFINYQFMSSHIKSVHSQDP 106
Score = 34.3 bits (77), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 1 MCDTCGKSFFSSTALKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCE 60
+C C +S+ T+L+ H +H K Y C C + F + + H+ + +QC
Sbjct: 24 ICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVF-PLAEYRTKHEIHHTGERRYQCL 82
Query: 61 YCGKDF 66
CGK F
Sbjct: 83 ACGKSF 88
Score = 32.0 bits (71), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 47/103 (45%), Gaps = 13/103 (12%)
Query: 70 YSLVVHRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFCPVCNKMFRVRSDMK 129
Y L+V R++ Y C C +++ + L+ H IH+ EK + C C K+F +
Sbjct: 13 YELIVDGRVY-----YICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRT 67
Query: 130 RHLNTHNVDARQYLTVTGSQT-------GAPIKKEPKQECNGD 165
+H H+ R+Y + ++ + IK Q+ +GD
Sbjct: 68 KH-EIHHTGERRYQCLACGKSFINYQFMSSHIKSVHSQDPSGD 109
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 5/80 (6%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHS-----DVKA 56
C C K F + H H G + Y C CG+ F + + H S+HS D K
Sbjct: 53 CRYCEKVFPLAEYRTKHEIHHTGERRYQCLACGKSFINYQFMSSHIKSVHSQDPSGDSKL 112
Query: 57 FQCEYCGKDFARKYSLVVHR 76
++ C R+Y+ + R
Sbjct: 113 YRLHPCRSLQIRQYAYLSDR 132
>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
199- 231) Of Human Zinc Finger Protein 224
Length = 46
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 24/31 (77%)
Query: 82 ERNYQCEFCHKAFRASSYLQNHRRIHTGEKP 112
E+ Y+C+ C K F SS+LQ H+R+HTGEKP
Sbjct: 10 EKCYKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 18/28 (64%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYG 29
CD CGK F S+ L+ H RVH G KP G
Sbjct: 15 CDVCGKEFSQSSHLQTHQRVHTGEKPSG 42
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 22/29 (75%)
Query: 55 KAFQCEYCGKDFARKYSLVVHRRIHTGER 83
K ++C+ CGK+F++ L H+R+HTGE+
Sbjct: 11 KCYKCDVCGKEFSQSSHLQTHQRVHTGEK 39
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 29/48 (60%)
Query: 84 NYQCEFCHKAFRASSYLQNHRRIHTGEKPHFCPVCNKMFRVRSDMKRH 131
++ CE C +AF +L+ H R HT EKP+ C +CN+ F R + RH
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRH 49
Score = 43.5 bits (101), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 56 AFQCEYCGKDFARKYSLVVHRRIHTGERNYQCEFCHKAFRASSYLQNH-RRIHTG 109
+F CE C + FAR+ L H R HT E+ Y C C++AF L H ++IH+G
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 26/52 (50%)
Query: 1 MCDTCGKSFFSSTALKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHS 52
+C+ C ++F LK H R H KPY C +C R F + L H +HS
Sbjct: 4 VCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHS 55
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 28 YGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYSLVVH-RRIHTG 81
+ CEVC R F + LK H S H++ K + C C + F R+ L+ H ++IH+G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRS-HTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
311- 343) Of Human Zinc Finger Protein 224
Length = 46
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 24/33 (72%)
Query: 80 TGERNYQCEFCHKAFRASSYLQNHRRIHTGEKP 112
T E+ ++C+ C K+FR S L +HR IHTGEKP
Sbjct: 8 TAEKPFRCDTCDKSFRQRSALNSHRMIHTGEKP 40
Score = 34.7 bits (78), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 55 KAFQCEYCGKDFARKYSLVVHRRIHTGER 83
K F+C+ C K F ++ +L HR IHTGE+
Sbjct: 11 KPFRCDTCDKSFRQRSALNSHRMIHTGEK 39
Score = 33.9 bits (76), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 17/28 (60%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYG 29
CDTC KSF +AL H +H G KP G
Sbjct: 15 CDTCDKSFRQRSALNSHRMIHTGEKPSG 42
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 108 TGEKPHFCPVCNKMFRVRSDMKRHLNTH 135
T EKP C C+K FR RS + H H
Sbjct: 8 TAEKPFRCDTCDKSFRQRSALNSHRMIH 35
>pdb|2EMW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
301- 331) Of Human Zinc Finger Protein 268
Length = 44
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 25/36 (69%)
Query: 48 ASLHSDVKAFQCEYCGKDFARKYSLVVHRRIHTGER 83
+S S K + C CGKDF+ K L+VH+RIHTGE+
Sbjct: 2 SSGSSGEKPYGCNECGKDFSSKSYLIVHQRIHTGEK 37
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 22/32 (68%)
Query: 80 TGERNYQCEFCHKAFRASSYLQNHRRIHTGEK 111
+GE+ Y C C K F + SYL H+RIHTGEK
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQRIHTGEK 37
Score = 30.4 bits (67), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYG 29
C+ CGK F S + L VH R+H G K G
Sbjct: 13 CNECGKDFSSKSYLIVHQRIHTGEKLSG 40
>pdb|2EOR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
255- 287) Of Human Zinc Finger Protein 224
Length = 46
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 22/31 (70%)
Query: 82 ERNYQCEFCHKAFRASSYLQNHRRIHTGEKP 112
E+ Y CE C KAF S LQ H+RIHTGEKP
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIHTGEKP 40
Score = 35.0 bits (79), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 55 KAFQCEYCGKDFARKYSLVVHRRIHTGER 83
K + CE CGK F L H+RIHTGE+
Sbjct: 11 KPYNCEECGKAFIHDSQLQEHQRIHTGEK 39
Score = 35.0 bits (79), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYG 29
C+ CGK+F + L+ H R+H G KP G
Sbjct: 15 CEECGKAFIHDSQLQEHQRIHTGEKPSG 42
>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
592- 624) Of Human Zinc Finger Protein 347
Length = 46
Score = 43.1 bits (100), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 23/31 (74%)
Query: 82 ERNYQCEFCHKAFRASSYLQNHRRIHTGEKP 112
E+ Y+C C K FR +SYL H+RIHTGEKP
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQRIHTGEKP 40
Score = 31.2 bits (69), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 55 KAFQCEYCGKDFARKYSLVVHRRIHTGER 83
K ++C CGK F L H+RIHTGE+
Sbjct: 11 KPYKCNECGKVFRHNSYLSRHQRIHTGEK 39
Score = 30.8 bits (68), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYG 29
C+ CGK F ++ L H R+H G KP G
Sbjct: 15 CNECGKVFRHNSYLSRHQRIHTGEKPSG 42
>pdb|2EOG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
693- 723) Of Human Zinc Finger Protein 268
Length = 44
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 22/33 (66%)
Query: 80 TGERNYQCEFCHKAFRASSYLQNHRRIHTGEKP 112
+G + Y C C KAFR+ SYL H R HTGEKP
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 22/36 (61%)
Query: 48 ASLHSDVKAFQCEYCGKDFARKYSLVVHRRIHTGER 83
+S S VK + C CGK F K L++H R HTGE+
Sbjct: 2 SSGSSGVKPYGCSECGKAFRSKSYLIIHMRTHTGEK 37
Score = 31.6 bits (70), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYG 29
C CGK+F S + L +H R H G KP G
Sbjct: 13 CSECGKAFRSKSYLIIHMRTHTGEKPSG 40
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 108 TGEKPHFCPVCNKMFRVRSDMKRHLNTHNVD 138
+G KP+ C C K FR +S + H+ TH +
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTHTGE 36
>pdb|2YTP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
687- 719) Of Human Zinc Finger Protein 484
Length = 46
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 23/27 (85%)
Query: 57 FQCEYCGKDFARKYSLVVHRRIHTGER 83
++C CGK FARK +L++H+RIHTGE+
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTGEK 39
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 22/31 (70%)
Query: 82 ERNYQCEFCHKAFRASSYLQNHRRIHTGEKP 112
ER+Y+C C KAF S L H+RIHTGEKP
Sbjct: 10 ERHYECSECGKAFARKSTLIMHQRIHTGEKP 40
Score = 33.5 bits (75), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYG 29
C CGK+F + L +H R+H G KP G
Sbjct: 15 CSECGKAFARKSTLIMHQRIHTGEKPSG 42
>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
725- 757) Of Human Zinc Finger Protein 473
Length = 46
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 82 ERNYQCEFCHKAFRASSYLQNHRRIHTGEKP 112
E+ Y C++C KAF S+ L H+RIHTGEKP
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 20/29 (68%)
Query: 55 KAFQCEYCGKDFARKYSLVVHRRIHTGER 83
K + C+YCGK F LV H+RIHTGE+
Sbjct: 11 KPYVCDYCGKAFGLSAELVRHQRIHTGEK 39
Score = 33.9 bits (76), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 1 MCDTCGKSFFSSTALKVHNRVHLGLKPYG 29
+CD CGK+F S L H R+H G KP G
Sbjct: 14 VCDYCGKAFGLSAELVRHQRIHTGEKPSG 42
Score = 27.3 bits (59), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 110 EKPHFCPVCNKMFRVRSDMKRHLNTHN 136
EKP+ C C K F + +++ RH H
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHT 36
>pdb|2EQ1|A Chain A, Solution Structure Of The 9th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 22/31 (70%)
Query: 82 ERNYQCEFCHKAFRASSYLQNHRRIHTGEKP 112
E+ Y+C C KAFRA S L H+ IHTGEKP
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTHQVIHTGEKP 40
Score = 32.0 bits (71), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 55 KAFQCEYCGKDFARKYSLVVHRRIHTGER 83
K ++C CGK F +L H+ IHTGE+
Sbjct: 11 KPYKCNECGKAFRAHSNLTTHQVIHTGEK 39
Score = 30.4 bits (67), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYG 29
C+ CGK+F + + L H +H G KP G
Sbjct: 15 CNECGKAFRAHSNLTTHQVIHTGEKPSG 42
>pdb|2EPU|A Chain A, Solution Structure Of The Secound C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 45
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 23/30 (76%)
Query: 55 KAFQCEYCGKDFARKYSLVVHRRIHTGERN 84
K F+C +CGK F K +LV H+RIHTGE++
Sbjct: 11 KPFECTHCGKSFRAKGNLVTHQRIHTGEKS 40
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 82 ERNYQCEFCHKAFRASSYLQNHRRIHTGEK 111
++ ++C C K+FRA L H+RIHTGEK
Sbjct: 10 QKPFECTHCGKSFRAKGNLVTHQRIHTGEK 39
Score = 26.6 bits (57), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLK 26
C CGKSF + L H R+H G K
Sbjct: 15 CTHCGKSFRAKGNLVTHQRIHTGEK 39
>pdb|2EON|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
397- 429) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 23/31 (74%)
Query: 82 ERNYQCEFCHKAFRASSYLQNHRRIHTGEKP 112
E+ Y+C+ C KAFR SS+L H +H+GE+P
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVHSGERP 40
Score = 32.0 bits (71), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 55 KAFQCEYCGKDFARKYSLVVHRRIHTGER 83
K ++C+ CGK F LV H +H+GER
Sbjct: 11 KPYKCQVCGKAFRVSSHLVQHHSVHSGER 39
Score = 30.4 bits (67), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 110 EKPHFCPVCNKMFRVRSDMKRHLNTHN 136
EKP+ C VC K FRV S + +H + H+
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVHS 36
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYG 29
C CGK+F S+ L H+ VH G +P G
Sbjct: 15 CQVCGKAFRVSSHLVQHHSVHSGERPSG 42
Score = 26.6 bits (57), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 26 KPYGCEVCGRHFRQWGDLKYHKASLHS 52
KPY C+VCG+ FR L H S+HS
Sbjct: 11 KPYKCQVCGKAFRVSSHLVQHH-SVHS 36
>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain
Of Human Transcriptional Repressor Ctcf
Length = 86
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 20 RVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSD---VKAFQCEYCGKDFARKYSLVVH 75
R H G KPY C C + FRQ L H H AF C CGK F R+ ++ H
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARH 66
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 30/64 (46%), Gaps = 10/64 (15%)
Query: 77 RIHTGERNYQCEFCHKAFRASSYLQNH-RRIHTGEKPHFCPV------CNKMFRVRSDMK 129
R HTGE+ Y C C K FR L H +R H P+F P C K F R+ M
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYH---DPNFVPAAFVCSKCGKTFTRRNTMA 64
Query: 130 RHLN 133
RH +
Sbjct: 65 RHAD 68
>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
396- 428) Of Human Zinc Finger Protein 347
Length = 46
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 22/31 (70%)
Query: 82 ERNYQCEFCHKAFRASSYLQNHRRIHTGEKP 112
E+ Y+C C K F +S+L NH RIHTGEKP
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40
Score = 33.5 bits (75), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 55 KAFQCEYCGKDFARKYSLVVHRRIHTGER 83
K ++C CGK F + L H RIHTGE+
Sbjct: 11 KPYKCNECGKVFTQNSHLTNHWRIHTGEK 39
Score = 30.0 bits (66), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYG 29
C+ CGK F ++ L H R+H G KP G
Sbjct: 15 CNECGKVFTQNSHLTNHWRIHTGEKPSG 42
>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
760- 792) Of Human Zinc Finger Protein 347
Length = 46
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 22/31 (70%)
Query: 82 ERNYQCEFCHKAFRASSYLQNHRRIHTGEKP 112
E+ Y+C C KAF +S L H+RIHTGEKP
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTGEKP 40
Score = 35.4 bits (80), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 55 KAFQCEYCGKDFARKYSLVVHRRIHTGER 83
K ++C CGK F++ L H+RIHTGE+
Sbjct: 11 KPYKCNECGKAFSQTSKLARHQRIHTGEK 39
Score = 33.9 bits (76), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYG 29
C+ CGK+F ++ L H R+H G KP G
Sbjct: 15 CNECGKAFSQTSKLARHQRIHTGEKPSG 42
>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
479- 511) Of Human Zinc Finger Protein 224
Length = 46
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 24/31 (77%)
Query: 82 ERNYQCEFCHKAFRASSYLQNHRRIHTGEKP 112
E+ +QCE C K F +S+L +H+R+HTGEKP
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 20/29 (68%)
Query: 55 KAFQCEYCGKDFARKYSLVVHRRIHTGER 83
K FQCE CGK F + L H+R+HTGE+
Sbjct: 11 KPFQCEECGKRFTQNSHLHSHQRVHTGEK 39
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 1 MCDTCGKSFFSSTALKVHNRVHLGLKPYG 29
C+ CGK F ++ L H RVH G KP G
Sbjct: 14 QCEECGKRFTQNSHLHSHQRVHTGEKPSG 42
>pdb|2EMK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
668- 700) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 24/31 (77%)
Query: 82 ERNYQCEFCHKAFRASSYLQNHRRIHTGEKP 112
E+ Y+C+ C KAF +++L H+R+HTGEKP
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVHTGEKP 40
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 22/29 (75%)
Query: 55 KAFQCEYCGKDFARKYSLVVHRRIHTGER 83
K ++C+ CGK F++ L+ H+R+HTGE+
Sbjct: 11 KPYECKECGKAFSQTTHLIQHQRVHTGEK 39
Score = 33.5 bits (75), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 17/28 (60%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYG 29
C CGK+F +T L H RVH G KP G
Sbjct: 15 CKECGKAFSQTTHLIQHQRVHTGEKPSG 42
>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In
Zinc Finger Protein 32
Length = 41
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 24/34 (70%)
Query: 48 ASLHSDVKAFQCEYCGKDFARKYSLVVHRRIHTG 81
+S S K +QC+ CGK F+++ SL VH R+HTG
Sbjct: 2 SSGSSGEKPYQCKECGKSFSQRGSLAVHERLHTG 35
Score = 36.2 bits (82), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 80 TGERNYQCEFCHKAFRASSYLQNHRRIHTGEKP 112
+GE+ YQC+ C K+F L H R+HTG P
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLHTGSGP 38
Score = 30.8 bits (68), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 1 MCDTCGKSFFSSTALKVHNRVHLGLKP 27
C CGKSF +L VH R+H G P
Sbjct: 12 QCKECGKSFSQRGSLAVHERLHTGSGP 38
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 24 GLKPYGCEVCGRHFRQWGDLKYHK 47
G KPY C+ CG+ F Q G L H+
Sbjct: 7 GEKPYQCKECGKSFSQRGSLAVHE 30
Score = 26.6 bits (57), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 108 TGEKPHFCPVCNKMFRVRSDMKRHLNTHN 136
+GEKP+ C C K F R + H H
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLHT 34
>pdb|2DLK|A Chain A, Solution Structure Of The First And The Second Zf-C2h2
Domains Of Zinc Finger Protein 692
Length = 79
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 33 CGRHFRQWGDLKYHKASLHSDVKAFQCE--YCGKDFARKYSLVVHRRIHTGERNYQCEF 89
CGR F L +HK H K+F C CGK F K L H ++H+ R+Y CEF
Sbjct: 15 CGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEF 73
Score = 33.5 bits (75), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 7/78 (8%)
Query: 80 TGERNYQCEF--CHKAFRASSYLQNHRRI-HTGEKPHFCP--VCNKMFRVRSDMKRHLNT 134
+G C+F C + F YL +H++ H +K CP C K F + +K H+
Sbjct: 3 SGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKL 62
Query: 135 HNVDARQYL-TVTGSQTG 151
H+ D R Y+ +G +G
Sbjct: 63 HS-DTRDYICEFSGPSSG 79
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 5 CGKSFFSSTALKVHNRV-HLGLKPYGCE--VCGRHFRQWGDLKYHKASLHSDVKAFQCEY 61
CG+ F + L H + H+ K + C CG+ F LK H LHSD + + CE+
Sbjct: 15 CGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEH-MKLHSDTRDYICEF 73
Query: 62 CG 63
G
Sbjct: 74 SG 75
Score = 26.9 bits (58), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 16/69 (23%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Query: 52 SDVKAFQCEY--CGKDFARKYSLVVHRRI-HTGERNYQCE--FCHKAFRASSYLQNHRRI 106
S C++ CG+ F+ + L H++ H ++++ C C K+F +L+ H ++
Sbjct: 3 SGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKL 62
Query: 107 HTGEKPHFC 115
H+ + + C
Sbjct: 63 HSDTRDYIC 71
>pdb|2EM2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
584- 616) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 24/31 (77%)
Query: 82 ERNYQCEFCHKAFRASSYLQNHRRIHTGEKP 112
E+ ++C+ C KAFR + +L +H RIHTGEKP
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIHTGEKP 40
Score = 35.0 bits (79), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 55 KAFQCEYCGKDFARKYSLVVHRRIHTGER 83
K F+C+ CGK F + L H RIHTGE+
Sbjct: 11 KPFKCKECGKAFRQNIHLASHLRIHTGEK 39
Score = 29.6 bits (65), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYG 29
C CGK+F + L H R+H G KP G
Sbjct: 15 CKECGKAFRQNIHLASHLRIHTGEKPSG 42
>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 21/30 (70%)
Query: 83 RNYQCEFCHKAFRASSYLQNHRRIHTGEKP 112
+ YQC C KAF +S L H+R+HTGEKP
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKP 40
Score = 36.6 bits (83), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 55 KAFQCEYCGKDFARKYSLVVHRRIHTGER 83
K +QC CGK F++ L H+R+HTGE+
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEK 39
Score = 34.3 bits (77), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 1 MCDTCGKSFFSSTALKVHNRVHLGLKPYG 29
C+ CGK+F ++ L H RVH G KP G
Sbjct: 14 QCNECGKAFSQTSKLARHQRVHTGEKPSG 42
>pdb|2YSV|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 17 In
Zinc Finger Protein 473
Length = 42
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 22/31 (70%)
Query: 80 TGERNYQCEFCHKAFRASSYLQNHRRIHTGE 110
+GE+ Y C+ C KAF SS L HRR+HTGE
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVHTGE 36
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 48 ASLHSDVKAFQCEYCGKDFARKYSLVVHRRIHTGERN 84
+S S K + C+ CGK F + L +HRR+HTGE
Sbjct: 2 SSGSSGEKPYVCQECGKAFTQSSCLSIHRRVHTGESG 38
Score = 31.2 bits (69), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 1 MCDTCGKSFFSSTALKVHNRVHLG 24
+C CGK+F S+ L +H RVH G
Sbjct: 12 VCQECGKAFTQSSCLSIHRRVHTG 35
>pdb|2EMF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
379- 411) Of Human Zinc Finger Protein 484
Length = 46
Score = 39.7 bits (91), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 22/29 (75%)
Query: 55 KAFQCEYCGKDFARKYSLVVHRRIHTGER 83
K F+C CGK F RK +L +H++IHTGE+
Sbjct: 11 KHFECTECGKAFTRKSTLSMHQKIHTGEK 39
Score = 36.2 bits (82), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 83 RNYQCEFCHKAFRASSYLQNHRRIHTGEKP 112
++++C C KAF S L H++IHTGEKP
Sbjct: 11 KHFECTECGKAFTRKSTLSMHQKIHTGEKP 40
Score = 32.0 bits (71), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYG 29
C CGK+F + L +H ++H G KP G
Sbjct: 15 CTECGKAFTRKSTLSMHQKIHTGEKPSG 42
>pdb|2EOE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
508- 540) Of Human Zinc Finger Protein 347
Length = 46
Score = 39.7 bits (91), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 82 ERNYQCEFCHKAFRASSYLQNHRRIHTGEKP 112
E+ Y+C C K F +S+L NH+RIHTG KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIHTGVKP 40
Score = 33.1 bits (74), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYG 29
C+ CGK F ++ L H R+H G+KP G
Sbjct: 15 CNECGKVFTQNSHLANHQRIHTGVKPSG 42
Score = 32.0 bits (71), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 55 KAFQCEYCGKDFARKYSLVVHRRIHTG 81
K ++C CGK F + L H+RIHTG
Sbjct: 11 KPYKCNECGKVFTQNSHLANHQRIHTG 37
>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2
Domains From Human Krueppel-Like Factor 10
Length = 72
Score = 39.7 bits (91), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 5 CGKSFFSSTALKVHNRVHLGLKPYGC--EVCGRHFRQWGDLKYHK 47
CGK++F S+ LK H R H G KP+ C + C R F + +L H+
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHR 69
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 52 SDVKAFQCEY--CGKDFARKYSLVVHRRIHTGERNYQCEF--CHKAFRASSYLQNHRRIH 107
S +++ C + CGK + + L H R HTGE+ + C + C + F S L HRR H
Sbjct: 13 SRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 90 CHKAFRASSYLQNHRRIHTGEKPHFCP--VCNKMFRVRSDMKRHLNTH 135
C K + SS+L+ H R HTGEKP C C + F ++ RH TH
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
640- 672) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 82 ERNYQCEFCHKAFRASSYLQNHRRIHTGEKP 112
E+ Y+C+ C KAF ++L H++ HTGEKP
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 55 KAFQCEYCGKDFARKYSLVVHRRIHTGER 83
K ++C+ C K F +K L H++ HTGE+
Sbjct: 11 KPYECKVCSKAFTQKAHLAQHQKTHTGEK 39
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 110 EKPHFCPVCNKMFRVRSDMKRHLNTHNVD 138
EKP+ C VC+K F ++ + +H TH +
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGE 38
Score = 26.9 bits (58), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYG 29
C C K+F L H + H G KP G
Sbjct: 15 CKVCSKAFTQKAHLAQHQKTHTGEKPSG 42
>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
715- 747) Of Human Zinc Finger Protein 484
Length = 46
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 21/31 (67%)
Query: 82 ERNYQCEFCHKAFRASSYLQNHRRIHTGEKP 112
E+ Y C C K+F S+L HRRIHTGEKP
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIHTGEKP 40
Score = 35.4 bits (80), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 19/29 (65%)
Query: 55 KAFQCEYCGKDFARKYSLVVHRRIHTGER 83
K + C CGK F +K L HRRIHTGE+
Sbjct: 11 KPYICNECGKSFIQKSHLNRHRRIHTGEK 39
Score = 35.0 bits (79), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 1 MCDTCGKSFFSSTALKVHNRVHLGLKPYG 29
+C+ CGKSF + L H R+H G KP G
Sbjct: 14 ICNECGKSFIQKSHLNRHRRIHTGEKPSG 42
>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
491- 523) Of Human Zinc Finger Protein 484
Length = 46
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 20/31 (64%)
Query: 82 ERNYQCEFCHKAFRASSYLQNHRRIHTGEKP 112
ER Y C C KAF S L H++IHTGEKP
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 33.5 bits (75), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 55 KAFQCEYCGKDFARKYSLVVHRRIHTGER 83
+ + C CGK F + +L+ H++IHTGE+
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQKIHTGEK 39
Score = 30.8 bits (68), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 1 MCDTCGKSFFSSTALKVHNRVHLGLKPYG 29
+C CGK+F + L H ++H G KP G
Sbjct: 14 ICTVCGKAFTDRSNLIKHQKIHTGEKPSG 42
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 110 EKPHFCPVCNKMFRVRSDMKRHLNTHN 136
E+P+ C VC K F RS++ +H H
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHT 36
>pdb|2D9H|A Chain A, Solution Structure Of The Forth And Fifth Zf-C2h2
Domains Of Zinc Finger Protein 692
Length = 78
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 30 CEVCGRHFRQWGDLKYHKASLHSDVKA--FQCEYCGKDFARKYSLVVHR 76
CE+CG RQ L +H+ V A F CE+CGK F + S+ HR
Sbjct: 10 CEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHR 58
Score = 33.9 bits (76), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Query: 52 SDVKAFQCEYCGKDFARKYSLVVHRRIHT---GERNYQCEFCHKAFRASSYLQNHR 104
S QCE CG +K SL H+R H + CEFC K F + HR
Sbjct: 3 SGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHR 58
>pdb|2YRH|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(699- 729) From Zinc Finger Protein 473
Length = 44
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 22/33 (66%)
Query: 80 TGERNYQCEFCHKAFRASSYLQNHRRIHTGEKP 112
+G++ C C K FR SS L H+RIH+GEKP
Sbjct: 6 SGKKPLVCNECGKTFRQSSCLSKHQRIHSGEKP 38
Score = 33.9 bits (76), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 1 MCDTCGKSFFSSTALKVHNRVHLGLKPYG 29
+C+ CGK+F S+ L H R+H G KP G
Sbjct: 12 VCNECGKTFRQSSCLSKHQRIHSGEKPSG 40
Score = 32.0 bits (71), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 48 ASLHSDVKAFQCEYCGKDFARKYSLVVHRRIHTGER 83
+S S K C CGK F + L H+RIH+GE+
Sbjct: 2 SSGSSGKKPLVCNECGKTFRQSSCLSKHQRIHSGEK 37
>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
603- 635) Of Human Zinc Finger Protein 484
Length = 46
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 82 ERNYQCEFCHKAFRASSYLQNHRRIHTGEKP 112
E+ Y+C C K+F S L H++IHTGEKP
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 21/29 (72%)
Query: 55 KAFQCEYCGKDFARKYSLVVHRRIHTGER 83
K ++C CGK F +K L VH++IHTGE+
Sbjct: 11 KPYECSICGKSFTKKSQLHVHQQIHTGEK 39
Score = 33.9 bits (76), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYG 29
C CGKSF + L VH ++H G KP G
Sbjct: 15 CSICGKSFTKKSQLHVHQQIHTGEKPSG 42
>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(781- 813) From Zinc Finger Protein 473
Length = 46
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 22/29 (75%)
Query: 55 KAFQCEYCGKDFARKYSLVVHRRIHTGER 83
K ++C CGK FA+K +L H+RIHTGE+
Sbjct: 11 KPYRCGECGKAFAQKANLTQHQRIHTGEK 39
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 82 ERNYQCEFCHKAFRASSYLQNHRRIHTGEKP 112
E+ Y+C C KAF + L H+RIHTGEKP
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYG 29
C CGK+F L H R+H G KP G
Sbjct: 15 CGECGKAFAQKANLTQHQRIHTGEKPSG 42
>pdb|2YSP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
507- 539) Of Human Zinc Finger Protein 224
Length = 46
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 23/29 (79%)
Query: 55 KAFQCEYCGKDFARKYSLVVHRRIHTGER 83
K ++CE CGK + K++L +H+++HTGER
Sbjct: 11 KPYKCEKCGKGYNSKFNLDMHQKVHTGER 39
Score = 34.7 bits (78), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 82 ERNYQCEFCHKAFRASSYLQNHRRIHTGEKP 112
E+ Y+CE C K + + L H+++HTGE+P
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQKVHTGERP 40
Score = 30.0 bits (66), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYG 29
C+ CGK + S L +H +VH G +P G
Sbjct: 15 CEKCGKGYNSKFNLDMHQKVHTGERPSG 42
>pdb|2ENH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
556- 588) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 82 ERNYQCEFCHKAFRASSYLQNHRRIHTGEKP 112
E+ Y+C+ C KAF + L H+R+H+GEKP
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVHSGEKP 40
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 55 KAFQCEYCGKDFARKYSLVVHRRIHTGER 83
K ++C+ C K F+ SL H+R+H+GE+
Sbjct: 11 KPYECDVCRKAFSHHASLTQHQRVHSGEK 39
Score = 31.2 bits (69), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYG 29
CD C K+F +L H RVH G KP G
Sbjct: 15 CDVCRKAFSHHASLTQHQRVHSGEKPSG 42
>pdb|2YTI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
564- 596) Of Human Zinc Finger Protein 347
Length = 46
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 82 ERNYQCEFCHKAFRASSYLQNHRRIHTGEKP 112
E+ Y+C C K F +S+L HR IHTGEKP
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 33.1 bits (74), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 55 KAFQCEYCGKDFARKYSLVVHRRIHTGER 83
K ++C CGK F + L HR IHTGE+
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEK 39
Score = 28.1 bits (61), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYG 29
C+ CGK F ++ L H +H G KP G
Sbjct: 15 CNECGKVFTQNSHLARHRGIHTGEKPSG 42
>pdb|2EMM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
544- 576) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 82 ERNYQCEFCHKAFRASSYLQNHRRIHTGEKP 112
ER ++C C K+F S++L H+RIHTGEKP
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQRIHTGEKP 40
Score = 35.4 bits (80), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 17/28 (60%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYG 29
C+ CGKSF S L H R+H G KP G
Sbjct: 15 CNECGKSFIQSAHLIQHQRIHTGEKPSG 42
Score = 33.9 bits (76), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 55 KAFQCEYCGKDFARKYSLVVHRRIHTGER 83
+ +C CGK F + L+ H+RIHTGE+
Sbjct: 11 RPHKCNECGKSFIQSAHLIQHQRIHTGEK 39
>pdb|2EMI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
547- 579) Of Human Zinc Finger Protein 484
Length = 46
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 21/31 (67%)
Query: 82 ERNYQCEFCHKAFRASSYLQNHRRIHTGEKP 112
ER+Y+C C KAF S L H+RIH GEKP
Sbjct: 10 ERHYECSECGKAFIQKSTLSMHQRIHRGEKP 40
Score = 35.0 bits (79), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYG 29
C CGK+F + L +H R+H G KP G
Sbjct: 15 CSECGKAFIQKSTLSMHQRIHRGEKPSG 42
Score = 34.3 bits (77), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 20/27 (74%)
Query: 57 FQCEYCGKDFARKYSLVVHRRIHTGER 83
++C CGK F +K +L +H+RIH GE+
Sbjct: 13 YECSECGKAFIQKSTLSMHQRIHRGEK 39
>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
563- 595) Of Human Zinc Finger Protein 224
Length = 46
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 23/31 (74%)
Query: 82 ERNYQCEFCHKAFRASSYLQNHRRIHTGEKP 112
E+ ++CE C K F +S L +H+R+HTGEKP
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHTGEKP 40
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 55 KAFQCEYCGKDFARKYSLVVHRRIHTGER 83
K F+CE CGK F + L H+R+HTGE+
Sbjct: 11 KPFKCEECGKRFTQNSQLHSHQRVHTGEK 39
Score = 33.1 bits (74), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYG 29
C+ CGK F ++ L H RVH G KP G
Sbjct: 15 CEECGKRFTQNSQLHSHQRVHTGEKPSG 42
>pdb|2YTQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
775- 807) Of Human Zinc Finger Protein 268
Length = 46
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 82 ERNYQCEFCHKAFRASSYLQNHRRIHTGEKP 112
E+ Y C C KAF + SYL H R H+GEKP
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 35.0 bits (79), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 55 KAFQCEYCGKDFARKYSLVVHRRIHTGER 83
K + C CGK F+ K L++H R H+GE+
Sbjct: 11 KPYGCSECGKAFSSKSYLIIHMRTHSGEK 39
Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYG 29
C CGK+F S + L +H R H G KP G
Sbjct: 15 CSECGKAFSSKSYLIIHMRTHSGEKPSG 42
Score = 26.6 bits (57), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 110 EKPHFCPVCNKMFRVRSDMKRHLNTHNVD 138
EKP+ C C K F +S + H+ TH+ +
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHSGE 38
>pdb|2EN9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
415- 447) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 20/29 (68%)
Query: 55 KAFQCEYCGKDFARKYSLVVHRRIHTGER 83
K F+C C K F + SL VH+RIHTGE+
Sbjct: 11 KLFKCNECKKTFTQSSSLTVHQRIHTGEK 39
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 19/28 (67%)
Query: 85 YQCEFCHKAFRASSYLQNHRRIHTGEKP 112
++C C K F SS L H+RIHTGEKP
Sbjct: 13 FKCNECKKTFTQSSSLTVHQRIHTGEKP 40
Score = 35.0 bits (79), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYG 29
C+ C K+F S++L VH R+H G KP G
Sbjct: 15 CNECKKTFTQSSSLTVHQRIHTGEKPSG 42
>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In
Zinc Finger Protein 32
Length = 42
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 22/28 (78%)
Query: 55 KAFQCEYCGKDFARKYSLVVHRRIHTGE 82
K ++C+ CGK F++K SL+VH R+HTG
Sbjct: 10 KPYRCDQCGKAFSQKGSLIVHIRVHTGS 37
Score = 32.7 bits (73), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 82 ERNYQCEFCHKAFRASSYLQNHRRIHTGEKP 112
E+ Y+C+ C KAF L H R+HTG P
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
Score = 32.0 bits (71), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 16/26 (61%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKP 27
CD CGK+F +L VH RVH G P
Sbjct: 14 CDQCGKAFSQKGSLIVHIRVHTGSGP 39
Score = 26.9 bits (58), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 26 KPYGCEVCGRHFRQWGDLKYH 46
KPY C+ CG+ F Q G L H
Sbjct: 10 KPYRCDQCGKAFSQKGSLIVH 30
>pdb|2EM9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
367- 399) Of Human Zinc Finger Protein 224
Length = 46
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 23/31 (74%)
Query: 82 ERNYQCEFCHKAFRASSYLQNHRRIHTGEKP 112
E+ Y C+ C K+FR +S L H+R+H+GEKP
Sbjct: 10 EKPYNCKECGKSFRWASCLLKHQRVHSGEKP 40
Score = 31.6 bits (70), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 55 KAFQCEYCGKDFARKYSLVVHRRIHTGER 83
K + C+ CGK F L+ H+R+H+GE+
Sbjct: 11 KPYNCKECGKSFRWASCLLKHQRVHSGEK 39
Score = 31.6 bits (70), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 17/28 (60%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYG 29
C CGKSF ++ L H RVH G KP G
Sbjct: 15 CKECGKSFRWASCLLKHQRVHSGEKPSG 42
>pdb|2EMY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
551- 583) Of Human Zinc Finger Protein 268
Length = 46
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 20/27 (74%)
Query: 57 FQCEYCGKDFARKYSLVVHRRIHTGER 83
++C CGK F+RKY L+ H+R H GE+
Sbjct: 13 YECHECGKAFSRKYQLISHQRTHAGEK 39
Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 82 ERNYQCEFCHKAFRASSYLQNHRRIHTGEKP 112
E Y+C C KAF L +H+R H GEKP
Sbjct: 10 ENPYECHECGKAFSRKYQLISHQRTHAGEKP 40
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 14/28 (50%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYG 29
C CGK+F L H R H G KP G
Sbjct: 15 CHECGKAFSRKYQLISHQRTHAGEKPSG 42
>pdb|2EOL|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
581- 609) Of Human Zinc Finger Protein 268
Length = 42
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 48 ASLHSDVKAFQCEYCGKDFARKYSLVVHRRIHTGERN 84
+S S K ++C CGK F K L++H+R HTGE
Sbjct: 2 SSGSSGEKPYECTDCGKAFGLKSQLIIHQRTHTGESG 38
Score = 35.4 bits (80), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 80 TGERNYQCEFCHKAFRASSYLQNHRRIHTGE 110
+GE+ Y+C C KAF S L H+R HTGE
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQRTHTGE 36
Score = 30.0 bits (66), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 108 TGEKPHFCPVCNKMFRVRSDMKRHLNTHNVDA 139
+GEKP+ C C K F ++S + H TH ++
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQRTHTGES 37
>pdb|2EPT|A Chain A, Solution Structure Of The First C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 41
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 80 TGERNYQCEFCHKAFRASSYLQNHRRIHTGEKP 112
+G+R Y+C+ C K+FR L H RIHTG P
Sbjct: 6 SGQRVYECQECGKSFRQKGSLTLHERIHTGSGP 38
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 48 ASLHSDVKAFQCEYCGKDFARKYSLVVHRRIHTG 81
+S S + ++C+ CGK F +K SL +H RIHTG
Sbjct: 2 SSGSSGQRVYECQECGKSFRQKGSLTLHERIHTG 35
Score = 30.8 bits (68), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKP 27
C CGKSF +L +H R+H G P
Sbjct: 13 CQECGKSFRQKGSLTLHERIHTGSGP 38
Score = 26.9 bits (58), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 24 GLKPYGCEVCGRHFRQWGDLKYHK 47
G + Y C+ CG+ FRQ G L H+
Sbjct: 7 GQRVYECQECGKSFRQKGSLTLHE 30
>pdb|2EQ0|A Chain A, Solution Structure Of The 8th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 82 ERNYQCEFCHKAFRASSYLQNHRRIHTGEKP 112
E+ Y+C C K FR +S+L H+ IHTGEKP
Sbjct: 10 EKPYKCHECGKVFRRNSHLARHQLIHTGEKP 40
Score = 31.6 bits (70), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 55 KAFQCEYCGKDFARKYSLVVHRRIHTGER 83
K ++C CGK F R L H+ IHTGE+
Sbjct: 11 KPYKCHECGKVFRRNSHLARHQLIHTGEK 39
Score = 26.6 bits (57), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYG 29
C CGK F ++ L H +H G KP G
Sbjct: 15 CHECGKVFRRNSHLARHQLIHTGEKPSG 42
>pdb|2EMJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
612- 644) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 38.1 bits (87), Expect = 0.002, Method: Composition-based stats.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 82 ERNYQCEFCHKAFRASSYLQNHRRIHTGEKP 112
E+ ++C C K+F SS L H+RIHTGEKP
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIHTGEKP 40
Score = 35.4 bits (80), Expect = 0.017, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 55 KAFQCEYCGKDFARKYSLVVHRRIHTGER 83
K F+C CGK F+ L H+RIHTGE+
Sbjct: 11 KPFECAECGKSFSISSQLATHQRIHTGEK 39
Score = 33.1 bits (74), Expect = 0.084, Method: Composition-based stats.
Identities = 15/28 (53%), Positives = 17/28 (60%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYG 29
C CGKSF S+ L H R+H G KP G
Sbjct: 15 CAECGKSFSISSQLATHQRIHTGEKPSG 42
>pdb|2EM4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
724- 756) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 21/31 (67%)
Query: 82 ERNYQCEFCHKAFRASSYLQNHRRIHTGEKP 112
+R Y+C C KAF+ S L HRR HTGEKP
Sbjct: 10 QRPYECIECGKAFKTKSSLICHRRSHTGEKP 40
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 55 KAFQCEYCGKDFARKYSLVVHRRIHTGER 83
+ ++C CGK F K SL+ HRR HTGE+
Sbjct: 11 RPYECIECGKAFKTKSSLICHRRSHTGEK 39
Score = 30.0 bits (66), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYG 29
C CGK+F + ++L H R H G KP G
Sbjct: 15 CIECGKAFKTKSSLICHRRSHTGEKPSG 42
>pdb|2ENF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
340- 372) Of Human Zinc Finger Protein 347
Length = 46
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 82 ERNYQCEFCHKAFRASSYLQNHRRIHTGEKP 112
E+ Y+C C K F +S+L HR IHTGEKP
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRGIHTGEKP 40
Score = 34.7 bits (78), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 55 KAFQCEYCGKDFARKYSLVVHRRIHTGER 83
K ++C CGK F + LV HR IHTGE+
Sbjct: 11 KPYKCNECGKVFTQNSHLVRHRGIHTGEK 39
Score = 27.7 bits (60), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYG 29
C+ CGK F ++ L H +H G KP G
Sbjct: 15 CNECGKVFTQNSHLVRHRGIHTGEKPSG 42
>pdb|2EP1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
435- 467) Of Human Zinc Finger Protein 484
Length = 46
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 20/28 (71%)
Query: 55 KAFQCEYCGKDFARKYSLVVHRRIHTGE 82
K ++C CGK F +K L VH+RIHTGE
Sbjct: 11 KPYECSDCGKSFIKKSQLHVHQRIHTGE 38
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 82 ERNYQCEFCHKAFRASSYLQNHRRIHTGEKP 112
E+ Y+C C K+F S L H+RIHTGE P
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQRIHTGENP 40
Score = 34.7 bits (78), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYG 29
C CGKSF + L VH R+H G P G
Sbjct: 15 CSDCGKSFIKKSQLHVHQRIHTGENPSG 42
>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
648- 680) Of Human Zinc Finger Protein 347
Length = 46
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 82 ERNYQCEFCHKAFRASSYLQNHRRIHTGEKP 112
E+ Y+C C K F +S+L HRR+HTG KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVHTGGKP 40
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 55 KAFQCEYCGKDFARKYSLVVHRRIHTGER 83
K ++C CGK F + L HRR+HTG +
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRRVHTGGK 39
Score = 31.2 bits (69), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYG 29
C+ CGK F ++ L H RVH G KP G
Sbjct: 15 CNECGKVFTQNSHLARHRRVHTGGKPSG 42
>pdb|2ELY|A Chain A, Solution Structure Of The Third Zf-C2h2 Domain From
Human Zinc Finger Protein 224
Length = 46
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 22/29 (75%)
Query: 55 KAFQCEYCGKDFARKYSLVVHRRIHTGER 83
K F+C CGK F+R+ +L VH ++HTGE+
Sbjct: 11 KPFKCVECGKGFSRRSALNVHHKLHTGEK 39
Score = 32.7 bits (73), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 82 ERNYQCEFCHKAFRASSYLQNHRRIHTGEKP 112
E+ ++C C K F S L H ++HTGEKP
Sbjct: 10 EKPFKCVECGKGFSRRSALNVHHKLHTGEKP 40
Score = 32.0 bits (71), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYG 29
C CGK F +AL VH+++H G KP G
Sbjct: 15 CVECGKGFSRRSALNVHHKLHTGEKPSG 42
>pdb|2EMA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
312- 344) Of Human Zinc Finger Protein 347
Length = 46
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 82 ERNYQCEFCHKAFRASSYLQNHRRIHTGEKP 112
E+ Y+C C K F +S L H++IHTGEKP
Sbjct: 10 EKRYKCNECGKVFSRNSQLSQHQKIHTGEKP 40
Score = 34.7 bits (78), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 55 KAFQCEYCGKDFARKYSLVVHRRIHTGER 83
K ++C CGK F+R L H++IHTGE+
Sbjct: 11 KRYKCNECGKVFSRNSQLSQHQKIHTGEK 39
Score = 31.2 bits (69), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYG 29
C+ CGK F ++ L H ++H G KP G
Sbjct: 15 CNECGKVFSRNSQLSQHQKIHTGEKPSG 42
>pdb|2EOW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
368- 400) Of Human Zinc Finger Protein 347
Length = 46
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 82 ERNYQCEFCHKAFRASSYLQNHRRIHTGEKP 112
E+ Y+C C KAFRA S L H+ H+GEKP
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQATHSGEKP 40
Score = 32.7 bits (73), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 55 KAFQCEYCGKDFARKYSLVVHRRIHTGER 83
K ++C CGK F + SL +H+ H+GE+
Sbjct: 11 KPYKCNECGKAFRARSSLAIHQATHSGEK 39
Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYG 29
C+ CGK+F + ++L +H H G KP G
Sbjct: 15 CNECGKAFRARSSLAIHQATHSGEKPSG 42
Score = 30.0 bits (66), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 110 EKPHFCPVCNKMFRVRSDMKRHLNTHNVD 138
EKP+ C C K FR RS + H TH+ +
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQATHSGE 38
Score = 27.7 bits (60), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 26 KPYGCEVCGRHFRQWGDLKYHKAS 49
KPY C CG+ FR L H+A+
Sbjct: 11 KPYKCNECGKAFRARSSLAIHQAT 34
>pdb|1UN6|B Chain B, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|C Chain C, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|D Chain D, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|2HGH|A Chain A, Transcription Factor Iiia Zinc Fingers 4-6 Bound To 5s
Rrna 55mer (Nmr Structure)
Length = 87
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 60 EYCGKDFARKYSLVVHRRIHTGERNYQC--EFCHKAFRASSYLQNHRRIHTG 109
E CGK F + L VH+ HT + Y+C E C K F S L+ H ++H G
Sbjct: 7 ENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 58
Score = 35.4 bits (80), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 39/88 (44%), Gaps = 18/88 (20%)
Query: 85 YQCEF--CHKAFRASSYLQNHRRIHTGEKPHFCP--VCNKMFRVRSDMKRHLNTHNVDAR 140
Y C F C KAF+ + L+ H+ HT + P+ CP C+K F + S +KRH H
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVH----- 56
Query: 141 QYLTVTGSQTGAPIKKEPKQECNGDYWS 168
G P KK+ G W+
Sbjct: 57 ---------AGYPCKKDDSCSFVGKTWT 75
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 3 DTCGKSFFSSTALKVHNRVHLGLKPYGC--EVCGRHFRQWGDLKYHK 47
+ CGK+F LKVH H PY C E C + F LK H+
Sbjct: 7 ENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHE 53
>pdb|2J7J|A Chain A, Invariance Of The Zinc Finger Module: A Comparison Of The
Free Structure With Those In Nucleic-Acid Complexes
Length = 85
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 60 EYCGKDFARKYSLVVHRRIHTGERNYQC--EFCHKAFRASSYLQNHRRIHTG 109
E CGK F + L VH+ HT + Y+C E C K F S L+ H ++H G
Sbjct: 7 ENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 58
Score = 35.4 bits (80), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 39/88 (44%), Gaps = 18/88 (20%)
Query: 85 YQCEF--CHKAFRASSYLQNHRRIHTGEKPHFCP--VCNKMFRVRSDMKRHLNTHNVDAR 140
Y C F C KAF+ + L+ H+ HT + P+ CP C+K F + S +KRH H
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVH----- 56
Query: 141 QYLTVTGSQTGAPIKKEPKQECNGDYWS 168
G P KK+ G W+
Sbjct: 57 ---------AGYPCKKDDSCSFVGKTWT 75
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 3 DTCGKSFFSSTALKVHNRVHLGLKPYGC--EVCGRHFRQWGDLKYHK 47
+ CGK+F LKVH H PY C E C + F LK H+
Sbjct: 7 ENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHE 53
>pdb|2ELS|A Chain A, Solution Structure Of The 2nd C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 20/32 (62%)
Query: 52 SDVKAFQCEYCGKDFARKYSLVVHRRIHTGER 83
S K F CEYC K F K+SL H RIHT E+
Sbjct: 5 SSGKIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
Score = 33.1 bits (74), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 85 YQCEFCHKAFRASSYLQNHRRIHTGEK 111
+ CE+C+K F+ LQ H RIHT EK
Sbjct: 10 FTCEYCNKVFKFKHSLQAHLRIHTNEK 36
>pdb|2EQ3|A Chain A, Solution Structure Of The 17th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 82 ERNYQCEFCHKAFRASSYLQNHRRIHTGEKP 112
E+ Y+C C KAF S L H+ IHTG+KP
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQAIHTGKKP 40
Score = 35.0 bits (79), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 55 KAFQCEYCGKDFARKYSLVVHRRIHTGER 83
K ++C CGK F+ + SL H+ IHTG++
Sbjct: 11 KPYECNQCGKAFSVRSSLTTHQAIHTGKK 39
Score = 31.2 bits (69), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYG 29
C+ CGK+F ++L H +H G KP G
Sbjct: 15 CNQCGKAFSVRSSLTTHQAIHTGKKPSG 42
Score = 27.7 bits (60), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 110 EKPHFCPVCNKMFRVRSDMKRHLNTHN 136
EKP+ C C K F VRS + H H
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQAIHT 36
>pdb|2YTF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
607- 639) Of Human Zinc Finger Protein 268
Length = 46
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 55 KAFQCEYCGKDFARKYSLVVHRRIHTGER 83
K F+C C K F K +L+VH+R HTGE+
Sbjct: 11 KPFECSECQKAFNTKSNLIVHQRTHTGEK 39
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 82 ERNYQCEFCHKAFRASSYLQNHRRIHTGEKP 112
E+ ++C C KAF S L H+R HTGEKP
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTHTGEKP 40
Score = 30.4 bits (67), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYG 29
C C K+F + + L VH R H G KP G
Sbjct: 15 CSECQKAFNTKSNLIVHQRTHTGEKPSG 42
>pdb|2EMV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
859- 889) Of Human Zinc Finger Protein 268
Length = 44
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 55 KAFQCEYCGKDFARKYSLVVHRRIHTGE 82
K ++C CGK F R L+VH+R H+GE
Sbjct: 11 KPYECSECGKAFIRNSQLIVHQRTHSGE 38
Score = 30.8 bits (68), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 80 TGERNYQCEFCHKAFRASSYLQNHRRIHTGE 110
T E+ Y+C C KAF +S L H+R H+GE
Sbjct: 8 TREKPYECSECGKAFIRNSQLIVHQRTHSGE 38
Score = 28.1 bits (61), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLG 24
C CGK+F ++ L VH R H G
Sbjct: 15 CSECGKAFIRNSQLIVHQRTHSG 37
>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
752- 784) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 22/29 (75%)
Query: 55 KAFQCEYCGKDFARKYSLVVHRRIHTGER 83
K ++C CGK F+ + SL VH+RIH+G++
Sbjct: 11 KPYECSVCGKAFSHRQSLSVHQRIHSGKK 39
Score = 35.4 bits (80), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 82 ERNYQCEFCHKAFRASSYLQNHRRIHTGEKP 112
E+ Y+C C KAF L H+RIH+G+KP
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
Score = 33.9 bits (76), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYG 29
C CGK+F +L VH R+H G KP G
Sbjct: 15 CSVCGKAFSHRQSLSVHQRIHSGKKPSG 42
>pdb|2EM5|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
768- 800) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 83 RNYQCEFCHKAFRASSYLQNHRRIHTGEKP 112
+++QC C + F S+L H+RIHTGEKP
Sbjct: 11 KSHQCHECGRGFTLKSHLNQHQRIHTGEKP 40
Score = 34.7 bits (78), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 54 VKAFQCEYCGKDFARKYSLVVHRRIHTGER 83
K+ QC CG+ F K L H+RIHTGE+
Sbjct: 10 TKSHQCHECGRGFTLKSHLNQHQRIHTGEK 39
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 1 MCDTCGKSFFSSTALKVHNRVHLGLKPYG 29
C CG+ F + L H R+H G KP G
Sbjct: 14 QCHECGRGFTLKSHLNQHQRIHTGEKPSG 42
>pdb|2YTN|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
732- 764) Of Human Zinc Finger Protein 347
Length = 46
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 82 ERNYQCEFCHKAFRASSYLQNHRRIHTGEKP 112
++ Y+C C K F +S+L HR IHTGEKP
Sbjct: 10 KKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 33.1 bits (74), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 55 KAFQCEYCGKDFARKYSLVVHRRIHTGER 83
K ++C CGK F + L HR IHTGE+
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEK 39
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYG 29
C+ CGK F ++ L H +H G KP G
Sbjct: 15 CNECGKVFTQNSHLARHRGIHTGEKPSG 42
>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
631- 663) Of Human Zinc Finger Protein 484
Length = 46
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 82 ERNYQCEFCHKAFRASSYLQNHRRIHTGEKP 112
E+ Y+C C KAF S L H++IHTGEKP
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40
Score = 34.3 bits (77), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 55 KAFQCEYCGKDFARKYSLVVHRRIHTGER 83
K ++C CGK F + +L H++IHTGE+
Sbjct: 11 KPYRCAECGKAFTDRSNLFTHQKIHTGEK 39
Score = 29.6 bits (65), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYG 29
C CGK+F + L H ++H G KP G
Sbjct: 15 CAECGKAFTDRSNLFTHQKIHTGEKPSG 42
>pdb|2EPZ|A Chain A, Solution Structure Of The 4th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 28 Homolog
Length = 46
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 19/31 (61%)
Query: 82 ERNYQCEFCHKAFRASSYLQNHRRIHTGEKP 112
E+ + C C KAF L HRRIHTGEKP
Sbjct: 10 EKPFDCIDCGKAFSDHIGLNQHRRIHTGEKP 40
Score = 35.4 bits (80), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 18/29 (62%)
Query: 55 KAFQCEYCGKDFARKYSLVVHRRIHTGER 83
K F C CGK F+ L HRRIHTGE+
Sbjct: 11 KPFDCIDCGKAFSDHIGLNQHRRIHTGEK 39
Score = 30.4 bits (67), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYG 29
C CGK+F L H R+H G KP G
Sbjct: 15 CIDCGKAFSDHIGLNQHRRIHTGEKPSG 42
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double Cys2His2
Zinc Finger From The Human Enhancer Binding Protein
Mbp-1
Length = 57
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%)
Query: 85 YQCEFCHKAFRASSYLQNHRRIHTGEKPHFCPVCNKMFRVRSDMKRHLNT 134
Y CE C + S L+ H R HT +P+ C CN F+ + ++ +H+ +
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS 51
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 1 MCDTCGKSFFSSTALKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYH-KASLHS 52
+C+ CG + LK H R H ++PY C C F+ G+L H K+ HS
Sbjct: 3 ICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHS 55
Score = 33.5 bits (75), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 28 YGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYSLVVHRR 77
Y CE CG ++ LK H H+DV+ + C YC F K +L H +
Sbjct: 2 YICEECGIRXKKPSMLKKH-IRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 32.7 bits (73), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 23/49 (46%)
Query: 57 FQCEYCGKDFARKYSLVVHRRIHTGERNYQCEFCHKAFRASSYLQNHRR 105
+ CE CG + L H R HT R Y C +C+ +F+ L H +
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
>pdb|2EN4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
284- 316) Of Human Zinc Finger Protein 347
Length = 46
Score = 36.6 bits (83), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 21/32 (65%)
Query: 80 TGERNYQCEFCHKAFRASSYLQNHRRIHTGEK 111
T E+ Y+C C KAFR S L H+ IHTGEK
Sbjct: 8 TKEKPYKCYECGKAFRTRSNLTTHQVIHTGEK 39
Score = 32.0 bits (71), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 55 KAFQCEYCGKDFARKYSLVVHRRIHTGER 83
K ++C CGK F + +L H+ IHTGE+
Sbjct: 11 KPYKCYECGKAFRTRSNLTTHQVIHTGEK 39
Score = 30.4 bits (67), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 108 TGEKPHFCPVCNKMFRVRSDMKRHLNTHNVDAR 140
T EKP+ C C K FR RS++ H H + R
Sbjct: 8 TKEKPYKCYECGKAFRTRSNLTTHQVIHTGEKR 40
>pdb|2EQW|A Chain A, Solution Structure Of The 6th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 484
Length = 42
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 20/37 (54%)
Query: 48 ASLHSDVKAFQCEYCGKDFARKYSLVVHRRIHTGERN 84
+S S K + C CGK F RK + H RIHTGE
Sbjct: 2 SSGSSGEKPYVCTECGKAFIRKSHFITHERIHTGESG 38
Score = 34.7 bits (78), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 80 TGERNYQCEFCHKAFRASSYLQNHRRIHTGE 110
+GE+ Y C C KAF S+ H RIHTGE
Sbjct: 6 SGEKPYVCTECGKAFIRKSHFITHERIHTGE 36
>pdb|2EMG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
463- 495) Of Human Zinc Finger Protein 484
Length = 46
Score = 36.6 bits (83), Expect = 0.007, Method: Composition-based stats.
Identities = 15/27 (55%), Positives = 20/27 (74%)
Query: 57 FQCEYCGKDFARKYSLVVHRRIHTGER 83
F C CGK F K +L++H++IHTGER
Sbjct: 13 FICSECGKVFTHKTNLIIHQKIHTGER 39
Score = 30.4 bits (67), Expect = 0.46, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 1 MCDTCGKSFFSSTALKVHNRVHLGLKPYG 29
+C CGK F T L +H ++H G +P G
Sbjct: 14 ICSECGKVFTHKTNLIIHQKIHTGERPSG 42
Score = 28.9 bits (63), Expect = 1.4, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 82 ERNYQCEFCHKAFRASSYLQNHRRIHTGEKP 112
E + C C K F + L H++IHTGE+P
Sbjct: 10 ENPFICSECGKVFTHKTNLIIHQKIHTGERP 40
>pdb|2EOP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
719- 751) Of Human Zinc Finger Protein 268
Length = 46
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 55 KAFQCEYCGKDFARKYSLVVHRRIHTGE 82
K +C CGK F+ L+VH+RIHTGE
Sbjct: 11 KPHECRECGKSFSFNSQLIVHQRIHTGE 38
Score = 33.5 bits (75), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 82 ERNYQCEFCHKAFRASSYLQNHRRIHTGEKP 112
E+ ++C C K+F +S L H+RIHTGE P
Sbjct: 10 EKPHECRECGKSFSFNSQLIVHQRIHTGENP 40
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYG 29
C CGKSF ++ L VH R+H G P G
Sbjct: 15 CRECGKSFSFNSQLIVHQRIHTGENPSG 42
>pdb|2EOM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
341- 373) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 82 ERNYQCEFCHKAFRASSYLQNHRRIHTGEKP 112
ER ++C C K F +S HRRIHTGEKP
Sbjct: 10 ERGHRCSDCGKFFLQASNFIQHRRIHTGEKP 40
Score = 32.0 bits (71), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 55 KAFQCEYCGKDFARKYSLVVHRRIHTGER 83
+ +C CGK F + + + HRRIHTGE+
Sbjct: 11 RGHRCSDCGKFFLQASNFIQHRRIHTGEK 39
Score = 29.6 bits (65), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYG 29
C CGK F ++ H R+H G KP G
Sbjct: 15 CSDCGKFFLQASNFIQHRRIHTGEKPSG 42
>pdb|2YTD|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
426- 458) Of Human Zinc Finger Protein 473
Length = 46
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 82 ERNYQCEFCHKAFRASSYLQNHRRIHTGEKP 112
E+ Y+C C KAF ++L HRRIHTG +P
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEHRRIHTGYRP 40
Score = 33.5 bits (75), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 18/29 (62%)
Query: 55 KAFQCEYCGKDFARKYSLVVHRRIHTGER 83
K ++C CGK F R L HRRIHTG R
Sbjct: 11 KPYKCSECGKAFHRHTHLNEHRRIHTGYR 39
Score = 31.6 bits (70), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYG 29
C CGK+F T L H R+H G +P G
Sbjct: 15 CSECGKAFHRHTHLNEHRRIHTGYRPSG 42
>pdb|2EMP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
536- 568) Of Human Zinc Finger Protein 347
Length = 46
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 18/30 (60%)
Query: 83 RNYQCEFCHKAFRASSYLQNHRRIHTGEKP 112
+ Y C C KAF S L H+ IHTGEKP
Sbjct: 11 KPYMCNECGKAFSVYSSLTTHQVIHTGEKP 40
Score = 35.8 bits (81), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 54 VKAFQCEYCGKDFARKYSLVVHRRIHTGER 83
VK + C CGK F+ SL H+ IHTGE+
Sbjct: 10 VKPYMCNECGKAFSVYSSLTTHQVIHTGEK 39
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 1 MCDTCGKSFFSSTALKVHNRVHLGLKPYG 29
MC+ CGK+F ++L H +H G KP G
Sbjct: 14 MCNECGKAFSVYSSLTTHQVIHTGEKPSG 42
>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
887- 919) Of Human Zinc Finger Protein 268
Length = 46
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 82 ERNYQCEFCHKAFRASSYLQNHRRIHTGEKP 112
E+ Y C C K F S L H+R HTGEKP
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTGEKP 40
Score = 35.0 bits (79), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 55 KAFQCEYCGKDFARKYSLVVHRRIHTGER 83
K + C CGK F++K L H+R HTGE+
Sbjct: 11 KPYGCNECGKTFSQKSILSAHQRTHTGEK 39
Score = 32.7 bits (73), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYG 29
C+ CGK+F + L H R H G KP G
Sbjct: 15 CNECGKTFSQKSILSAHQRTHTGEKPSG 42
Score = 27.3 bits (59), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 26 KPYGCEVCGRHFRQWGDLKYHK 47
KPYGC CG+ F Q L H+
Sbjct: 11 KPYGCNECGKTFSQKSILSAHQ 32
>pdb|2EN0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
385- 413) Of Human Zinc Finger Protein 268
Length = 42
Score = 36.2 bits (82), Expect = 0.008, Method: Composition-based stats.
Identities = 17/35 (48%), Positives = 21/35 (60%)
Query: 48 ASLHSDVKAFQCEYCGKDFARKYSLVVHRRIHTGE 82
+S S K + C CGK F K L++H RIHTGE
Sbjct: 2 SSGSSGQKPYVCNECGKAFGLKSQLIIHERIHTGE 36
Score = 33.1 bits (74), Expect = 0.076, Method: Composition-based stats.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 80 TGERNYQCEFCHKAFRASSYLQNHRRIHTGE 110
+G++ Y C C KAF S L H RIHTGE
Sbjct: 6 SGQKPYVCNECGKAFGLKSQLIIHERIHTGE 36
Score = 27.7 bits (60), Expect = 3.0, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 1 MCDTCGKSFFSSTALKVHNRVHLG 24
+C+ CGK+F + L +H R+H G
Sbjct: 12 VCNECGKAFGLKSQLIIHERIHTG 35
>pdb|2DRP|A Chain A, The Crystal Structure Of A Two Zinc-Finger Peptide
Reveals An Extension To The Rules For Zinc-FingerDNA
RECOGNITION
pdb|2DRP|D Chain D, The Crystal Structure Of A Two Zinc-Finger Peptide
Reveals An Extension To The Rules For Zinc-FingerDNA
RECOGNITION
Length = 66
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 24 GLKPYGCEVCGRHFRQWGDLKYHKASLHS-DVKAFQCEYCGKDFARKYSLVVHRRI 78
G Y C+VC R + + H + H +VK + C +C K+F RK ++ H +I
Sbjct: 7 GEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKI 62
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 8/57 (14%)
Query: 81 GERNYQCEFCHKAFRASS-----YLQNHRRIHTGEKPHFCPVCNKMFRVRSDMKRHL 132
GE Y+C+ C + + S Y+ +H+R K + CP C K F + +M H+
Sbjct: 7 GEHTYRCKVCSRVYTHISNFCRHYVTSHKR---NVKVYPCPFCFKEFTRKDNMTAHV 60
>pdb|2ELZ|A Chain A, Solution Structure Of The 17th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 36.2 bits (82), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 22/29 (75%)
Query: 55 KAFQCEYCGKDFARKYSLVVHRRIHTGER 83
K ++CE CGK + R+ +L +H+R+H GE+
Sbjct: 11 KPYKCEDCGKGYNRRLNLDMHQRVHMGEK 39
Score = 31.2 bits (69), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 82 ERNYQCEFCHKAFRASSYLQNHRRIHTGEK 111
E+ Y+CE C K + L H+R+H GEK
Sbjct: 10 EKPYKCEDCGKGYNRRLNLDMHQRVHMGEK 39
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYG 29
C+ CGK + L +H RVH+G K G
Sbjct: 15 CEDCGKGYNRRLNLDMHQRVHMGEKTSG 42
>pdb|2YTO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
659- 691) Of Human Zinc Finger Protein 484
Length = 46
Score = 36.2 bits (82), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 55 KAFQCEYCGKDFARKYSLVVHRRIHTGER 83
K ++C CGK F RK L +H++ HTGER
Sbjct: 11 KPYKCSDCGKAFTRKSGLHIHQQSHTGER 39
Score = 30.0 bits (66), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 82 ERNYQCEFCHKAFRASSYLQNHRRIHTGEK 111
E+ Y+C C KAF S L H++ HTGE+
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIHQQSHTGER 39
>pdb|2EMX|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
273- 303) Of Human Zinc Finger Protein 268
Length = 44
Score = 35.8 bits (81), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 80 TGERNYQCEFCHKAFRASSYLQNHRRIHTGEKP 112
+GE+ + C C KAF + SYL H++ H EKP
Sbjct: 6 SGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKP 38
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 48 ASLHSDVKAFQCEYCGKDFARKYSLVVHRRIHTGER 83
+S S K F C C K F+ K L+VH++ H E+
Sbjct: 2 SSGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEK 37
Score = 27.3 bits (59), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 108 TGEKPHFCPVCNKMFRVRSDMKRHLNTH 135
+GEKP C C K F +S + H TH
Sbjct: 6 SGEKPFGCSCCEKAFSSKSYLLVHQQTH 33
>pdb|2EM1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
637- 667) Of Human Zinc Finger Protein 268
Length = 44
Score = 35.8 bits (81), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%)
Query: 80 TGERNYQCEFCHKAFRASSYLQNHRRIHTGEKP 112
+GE+ Y C C KAF S L H+ +HTG KP
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
Score = 35.0 bits (79), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 48 ASLHSDVKAFQCEYCGKDFARKYSLVVHRRIHTGER 83
+S S K + C CGK F K L+VH+ +HTG +
Sbjct: 2 SSGSSGEKPYSCNECGKAFTFKSQLIVHKGVHTGVK 37
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYG 29
C+ CGK+F + L VH VH G+KP G
Sbjct: 13 CNECGKAFTFKSQLIVHKGVHTGVKPSG 40
Score = 26.9 bits (58), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 108 TGEKPHFCPVCNKMFRVRSDMKRHLNTHN 136
+GEKP+ C C K F +S + H H
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGVHT 34
Score = 26.6 bits (57), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 24 GLKPYGCEVCGRHFRQWGDLKYHKASLHSDVK 55
G KPY C CG+ F L HK +H+ VK
Sbjct: 7 GEKPYSCNECGKAFTFKSQLIVHKG-VHTGVK 37
>pdb|2EPY|A Chain A, Solution Structure Of The 10th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 42
Score = 35.0 bits (79), Expect = 0.019, Method: Composition-based stats.
Identities = 17/35 (48%), Positives = 23/35 (65%)
Query: 48 ASLHSDVKAFQCEYCGKDFARKYSLVVHRRIHTGE 82
+S S K +C CGK F+ K L++H+RIHTGE
Sbjct: 2 SSGSSGEKLHECNNCGKAFSFKSQLIIHQRIHTGE 36
Score = 33.1 bits (74), Expect = 0.084, Method: Composition-based stats.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 80 TGERNYQCEFCHKAFRASSYLQNHRRIHTGE 110
+GE+ ++C C KAF S L H+RIHTGE
Sbjct: 6 SGEKLHECNNCGKAFSFKSQLIIHQRIHTGE 36
Score = 27.3 bits (59), Expect = 4.4, Method: Composition-based stats.
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLG 24
C+ CGK+F + L +H R+H G
Sbjct: 13 CNNCGKAFSFKSQLIIHQRIHTG 35
>pdb|2EN8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
171- 203) Of Human Zinc Finger Protein 224
Length = 46
Score = 35.0 bits (79), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYG 29
CD CGK+F +AL++H RVH+G K G
Sbjct: 15 CDECGKNFCYISALRIHQRVHMGEKCSG 42
Score = 31.6 bits (70), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 55 KAFQCEYCGKDFARKYSLVVHRRIHTGER 83
K+ C+ CGK+F +L +H+R+H GE+
Sbjct: 11 KSHTCDECGKNFCYISALRIHQRVHMGEK 39
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 82 ERNYQCEFCHKAFRASSYLQNHRRIHTGEK 111
E+++ C+ C K F S L+ H+R+H GEK
Sbjct: 10 EKSHTCDECGKNFCYISALRIHQRVHMGEK 39
>pdb|2EOI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
329- 359) Of Human Zinc Finger Protein 268
Length = 44
Score = 35.0 bits (79), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 80 TGERNYQCEFCHKAFRASSYLQNHRRIHTGEKP 112
+GE+ ++C C K F S L H+RIHTGE P
Sbjct: 6 SGEKLHECSECRKTFSFHSQLVIHQRIHTGENP 38
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 48 ASLHSDVKAFQCEYCGKDFARKYSLVVHRRIHTGE 82
+S S K +C C K F+ LV+H+RIHTGE
Sbjct: 2 SSGSSGEKLHECSECRKTFSFHSQLVIHQRIHTGE 36
Score = 26.6 bits (57), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYG 29
C C K+F + L +H R+H G P G
Sbjct: 13 CSECRKTFSFHSQLVIHQRIHTGENPSG 40
>pdb|2EN7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
495- 525) Of Human Zinc Finger Protein 268
Length = 44
Score = 35.0 bits (79), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 18/28 (64%)
Query: 83 RNYQCEFCHKAFRASSYLQNHRRIHTGE 110
+ Y C C KAFR+ SYL H R HTGE
Sbjct: 11 KPYVCNECGKAFRSKSYLIIHTRTHTGE 38
Score = 33.9 bits (76), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 54 VKAFQCEYCGKDFARKYSLVVHRRIHTGE 82
+K + C CGK F K L++H R HTGE
Sbjct: 10 MKPYVCNECGKAFRSKSYLIIHTRTHTGE 38
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 1 MCDTCGKSFFSSTALKVHNRVHLG 24
+C+ CGK+F S + L +H R H G
Sbjct: 14 VCNECGKAFRSKSYLIIHTRTHTG 37
>pdb|2EL5|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 42
Score = 35.0 bits (79), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 48 ASLHSDVKAFQCEYCGKDFARKYSLVVHRRIHTGE 82
+S S ++C CGK F RK L+ H+R H GE
Sbjct: 2 SSGSSGENPYECSECGKAFNRKDQLISHQRTHAGE 36
Score = 32.0 bits (71), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 80 TGERNYQCEFCHKAFRASSYLQNHRRIHTGE 110
+GE Y+C C KAF L +H+R H GE
Sbjct: 6 SGENPYECSECGKAFNRKDQLISHQRTHAGE 36
>pdb|2EOF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
411- 441) Of Human Zinc Finger Protein 268
Length = 44
Score = 34.7 bits (78), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 82 ERNYQCEFCHKAFRASSYLQNHRRIHTGE 110
E+ Y+C C KAF S L H+R HTGE
Sbjct: 10 EKPYECNECQKAFNTKSNLMVHQRTHTGE 38
Score = 34.3 bits (77), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 55 KAFQCEYCGKDFARKYSLVVHRRIHTGE 82
K ++C C K F K +L+VH+R HTGE
Sbjct: 11 KPYECNECQKAFNTKSNLMVHQRTHTGE 38
Score = 26.6 bits (57), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 110 EKPHFCPVCNKMFRVRSDMKRHLNTHNVDA 139
EKP+ C C K F +S++ H TH ++
Sbjct: 10 EKPYECNECQKAFNTKSNLMVHQRTHTGES 39
>pdb|2EOS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
626- 654) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 34.7 bits (78), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 82 ERNYQCEFCHKAFRASSYLQNHRRIHTGEKP 112
E+ Y CE C FR L++H RIHTG P
Sbjct: 9 EKPYPCEICGTRFRHLQTLKSHLRIHTGSGP 39
Score = 29.6 bits (65), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 13/21 (61%)
Query: 26 KPYGCEVCGRHFRQWGDLKYH 46
KPY CE+CG FR LK H
Sbjct: 10 KPYPCEICGTRFRHLQTLKSH 30
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 55 KAFQCEYCGKDFARKYSLVVHRRIHTG 81
K + CE CG F +L H RIHTG
Sbjct: 10 KPYPCEICGTRFRHLQTLKSHLRIHTG 36
Score = 26.9 bits (58), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 110 EKPHFCPVCNKMFRVRSDMKRHLNTHN 136
EKP+ C +C FR +K HL H
Sbjct: 9 EKPYPCEICGTRFRHLQTLKSHLRIHT 35
>pdb|2YTG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
369- 401) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 34.7 bits (78), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 55 KAFQCEYCGKDFARKYSLVVHRRIHTGER 83
K F+C CGK + ++ L H+R+HTGE+
Sbjct: 11 KPFKCGECGKSYNQRVHLTQHQRVHTGEK 39
Score = 33.9 bits (76), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 82 ERNYQCEFCHKAFRASSYLQNHRRIHTGEKP 112
E+ ++C C K++ +L H+R+HTGEKP
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQRVHTGEKP 40
Score = 30.4 bits (67), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 15/28 (53%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYG 29
C CGKS+ L H RVH G KP G
Sbjct: 15 CGECGKSYNQRVHLTQHQRVHTGEKPSG 42
>pdb|2EL4|A Chain A, Solution Structure Of The 15th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 34.7 bits (78), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 54 VKAFQCEYCGKDFARKYSLVVHRRIHTGER 83
VK + C C K F+ K L+VH+R HTG +
Sbjct: 10 VKPYGCSQCAKTFSLKSQLIVHQRSHTGVK 39
Score = 30.4 bits (67), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYG 29
C C K+F + L VH R H G+KP G
Sbjct: 15 CSQCAKTFSLKSQLIVHQRSHTGVKPSG 42
Score = 30.0 bits (66), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 83 RNYQCEFCHKAFRASSYLQNHRRIHTGEKP 112
+ Y C C K F S L H+R HTG KP
Sbjct: 11 KPYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40
>pdb|2EQ4|A Chain A, Solution Structure Of The 11th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 224
Length = 46
Score = 34.3 bits (77), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 55 KAFQCEYCGKDFARKYSLVVHRRIHTGER 83
K + C+ CGK F+R L+ H R+H+GE+
Sbjct: 11 KLYNCKECGKSFSRAPCLLKHERLHSGEK 39
Score = 33.5 bits (75), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 82 ERNYQCEFCHKAFRASSYLQNHRRIHTGEKP 112
E+ Y C+ C K+F + L H R+H+GEKP
Sbjct: 10 EKLYNCKECGKSFSRAPCLLKHERLHSGEKP 40
Score = 30.4 bits (67), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYG 29
C CGKSF + L H R+H G KP G
Sbjct: 15 CKECGKSFSRAPCLLKHERLHSGEKPSG 42
>pdb|2LVT|A Chain A, Solution Structure Of Miz-1 Zinc Finger 9
Length = 29
Score = 34.3 bits (77), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 55 KAFQCEYCGKDFARKYSLVVHRRIHTGER 83
K QC CGK F + SL+ H R HTGE+
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29
Score = 30.8 bits (68), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 16/26 (61%)
Query: 86 QCEFCHKAFRASSYLQNHRRIHTGEK 111
QC C KAF +S L H R HTGEK
Sbjct: 4 QCVMCGKAFTQASSLIAHVRQHTGEK 29
>pdb|2EM8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
423- 455) Of Human Zinc Finger Protein 224
Length = 46
Score = 33.9 bits (76), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 55 KAFQCEYCGKDFARKYSLVVHRRIHTGER 83
K ++C CGK + R+ L H+R+HTGE+
Sbjct: 11 KPYKCVECGKGYKRRLDLDFHQRVHTGEK 39
Score = 30.0 bits (66), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 82 ERNYQCEFCHKAFRASSYLQNHRRIHTGEK 111
E+ Y+C C K ++ L H+R+HTGEK
Sbjct: 10 EKPYKCVECGKGYKRRLDLDFHQRVHTGEK 39
>pdb|2YTM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
696- 728) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.9 bits (76), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 82 ERNYQCEFCHKAFRASSYLQNHRRIHTGEKP 112
E+ Y+C C KAF +S H+R+HTG++P
Sbjct: 10 EKPYKCMECGKAFGDNSSCTQHQRLHTGQRP 40
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 55 KAFQCEYCGKDFARKYSLVVHRRIHTGER 83
K ++C CGK F S H+R+HTG+R
Sbjct: 11 KPYKCMECGKAFGDNSSCTQHQRLHTGQR 39
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYG 29
C CGK+F +++ H R+H G +P G
Sbjct: 15 CMECGKAFGDNSSCTQHQRLHTGQRPSG 42
>pdb|2EOV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
519- 551) Of Human Zinc Finger Protein 484
Length = 46
Score = 33.5 bits (75), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 55 KAFQCEYCGKDFARKYSLVVHRRIHTGER 83
K ++C CGK F K L +H++ HTGER
Sbjct: 11 KPYKCSDCGKSFTWKSRLRIHQKCHTGER 39
Score = 30.0 bits (66), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 82 ERNYQCEFCHKAFRASSYLQNHRRIHTGEK 111
E+ Y+C C K+F S L+ H++ HTGE+
Sbjct: 10 EKPYKCSDCGKSFTWKSRLRIHQKCHTGER 39
Score = 26.6 bits (57), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYG 29
C CGKSF + L++H + H G + G
Sbjct: 15 CSDCGKSFTWKSRLRIHQKCHTGERHSG 42
>pdb|2EOZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
809- 841) Of Human Zinc Finger Protein 473
Length = 46
Score = 33.5 bits (75), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 82 ERNYQCEFCHKAFRASSYLQNHRRIHTGE 110
E+ Y C C KAF S++L H R+HT E
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVHTQE 38
Score = 30.0 bits (66), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 5/42 (11%)
Query: 110 EKPHFCPVCNKMFRVRSDMKRHLNTHNVDARQYLTVTGSQTG 151
EKP+ C VC K F + + + +HL H + T++G +G
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVHTQE-----TLSGPSSG 46
Score = 27.7 bits (60), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 55 KAFQCEYCGKDFARKYSLVVHRRIHTGE 82
K + C CGK F L H R+HT E
Sbjct: 11 KPYSCNVCGKAFVLSAHLNQHLRVHTQE 38
>pdb|2EOQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
283- 315) Of Human Zinc Finger Protein 224
Length = 46
Score = 33.1 bits (74), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 82 ERNYQCEFCHKAFRASSYLQNHRRIHTGEKP 112
E+ ++C+ C K+F S L H +HT EKP
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRHSMVHTAEKP 40
Score = 30.4 bits (67), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYG 29
CD CGKSF + L H+ VH KP G
Sbjct: 15 CDICGKSFCGRSRLNRHSMVHTAEKPSG 42
Score = 30.0 bits (66), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 55 KAFQCEYCGKDFARKYSLVVHRRIHTGER 83
K F+C+ CGK F + L H +HT E+
Sbjct: 11 KPFKCDICGKSFCGRSRLNRHSMVHTAEK 39
Score = 26.2 bits (56), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 110 EKPHFCPVCNKMFRVRSDMKRHLNTHNVD 138
EKP C +C K F RS + RH H +
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRHSMVHTAE 38
>pdb|2EM7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
339- 371) Of Human Zinc Finger Protein 224
Length = 46
Score = 33.1 bits (74), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 82 ERNYQCEFCHKAFRASSYLQNHRRIHTGEKP 112
E+ Y+CE C K F L H +HTGEKP
Sbjct: 10 EKPYKCEECGKGFICRRDLYTHHMVHTGEKP 40
Score = 32.0 bits (71), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 55 KAFQCEYCGKDFARKYSLVVHRRIHTGER 83
K ++CE CGK F + L H +HTGE+
Sbjct: 11 KPYKCEECGKGFICRRDLYTHHMVHTGEK 39
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYG 29
C+ CGK F L H+ VH G KP G
Sbjct: 15 CEECGKGFICRRDLYTHHMVHTGEKPSG 42
>pdb|2ENC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
395- 427) Of Human Zinc Finger Protein 224
Length = 46
Score = 33.1 bits (74), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 82 ERNYQCEFCHKAFRASSYLQNHRRIHTGEKP 112
E+ ++CE C K F +S +H+R H+GEKP
Sbjct: 10 EKPFKCEECGKGFYTNSQCYSHQRSHSGEKP 40
Score = 30.8 bits (68), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 55 KAFQCEYCGKDFARKYSLVVHRRIHTGER 83
K F+CE CGK F H+R H+GE+
Sbjct: 11 KPFKCEECGKGFYTNSQCYSHQRSHSGEK 39
Score = 30.4 bits (67), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYG 29
C+ CGK F++++ H R H G KP G
Sbjct: 15 CEECGKGFYTNSQCYSHQRSHSGEKPSG 42
>pdb|1XF7|A Chain A, High Resolution Nmr Structure Of The Wilms' Tumor
Suppressor Protein (Wt1) Finger 3
Length = 29
Score = 32.7 bits (73), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 55 KAFQCEYCGKDFARKYSLVVHRRIHTGER 83
K FQC+ C + F+R L H R HTGE+
Sbjct: 1 KPFQCKTCQRKFSRSDHLKTHTRTHTGEK 29
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 83 RNYQCEFCHKAFRASSYLQNHRRIHTGEK 111
+ +QC+ C + F S +L+ H R HTGEK
Sbjct: 1 KPFQCKTCQRKFSRSDHLKTHTRTHTGEK 29
Score = 26.6 bits (57), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 13/26 (50%)
Query: 1 MCDTCGKSFFSSTALKVHNRVHLGLK 26
C TC + F S LK H R H G K
Sbjct: 4 QCKTCQRKFSRSDHLKTHTRTHTGEK 29
>pdb|2EPQ|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 45
Score = 32.7 bits (73), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 108 TGEKPHFCPVCNKMFRVRSDMKRHLNTHN 136
+GEKP+ CPVC F+ + M H+ +H+
Sbjct: 6 SGEKPYSCPVCGLRFKRKDRMSYHVRSHD 34
Score = 27.7 bits (60), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 24 GLKPYGCEVCGRHFRQWGDLKYH 46
G KPY C VCG F++ + YH
Sbjct: 7 GEKPYSCPVCGLRFKRKDRMSYH 29
>pdb|1X5W|A Chain A, Solution Structure Of The C2h2 Type Zinc-Binding Domain
Of Human Zinc Finger Protein 64, Isoforms 1 And 2
Length = 70
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 13 TALKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKA 56
AL++H R+H +P+ C C +Q +L H H D+
Sbjct: 23 AALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMSG 66
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 69 KYSLVVHRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGE 110
K +L +H RIH +R ++C +C + S L H + G+
Sbjct: 22 KAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGD 63
>pdb|2YTJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
771- 803) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 82 ERNYQCEFCHKAFRASSYLQNHRRIHTGEKP 112
E+ Y C C KAF S L H++IHT +KP
Sbjct: 10 EKPYICAECGKAFTIRSNLIKHQKIHTKQKP 40
Score = 30.4 bits (67), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 110 EKPHFCPVCNKMFRVRSDMKRHLNTHN 136
EKP+ C C K F +RS++ +H H
Sbjct: 10 EKPYICAECGKAFTIRSNLIKHQKIHT 36
Score = 29.3 bits (64), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 55 KAFQCEYCGKDFARKYSLVVHRRIHTGER 83
K + C CGK F + +L+ H++IHT ++
Sbjct: 11 KPYICAECGKAFTIRSNLIKHQKIHTKQK 39
Score = 26.6 bits (57), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 1 MCDTCGKSFFSSTALKVHNRVHLGLKPYG 29
+C CGK+F + L H ++H KP G
Sbjct: 14 ICAECGKAFTIRSNLIKHQKIHTKQKPSG 42
>pdb|2EL6|A Chain A, Solution Structure Of The 21th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 54 VKAFQCEYCGKDFARKYSLVVHRRIHTGER 83
V ++C C K F+ K L+VH+R+HT E+
Sbjct: 10 VNPYKCSQCEKSFSGKLRLLVHQRMHTREK 39
Score = 29.6 bits (65), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 85 YQCEFCHKAFRASSYLQNHRRIHTGEKP 112
Y+C C K+F L H+R+HT EKP
Sbjct: 13 YKCSQCEKSFSGKLRLLVHQRMHTREKP 40
Score = 26.6 bits (57), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 14/28 (50%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYG 29
C C KSF L VH R+H KP G
Sbjct: 15 CSQCEKSFSGKLRLLVHQRMHTREKPSG 42
>pdb|2EJ4|A Chain A, Functional And Structural Basis Of Nuclear Localization
Signal In Zic3 Zinc Finger Domain: A Role Of Conserved
Tryptophan Residue In The Zinc Finger Domain
Length = 95
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 58 QCEYCGKDFARKYSLVVHRRIHTGERN 84
+C GK F KY LV H R+HTGE++
Sbjct: 64 ECPREGKSFKAKYKLVNHIRVHTGEKS 90
Score = 31.6 bits (70), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 9/59 (15%)
Query: 62 CGKDFARKYSLVVHRRI-HTG--ERN------YQCEFCHKAFRASSYLQNHRRIHTGEK 111
C + F+ + LV H + H G E+N +C K+F+A L NH R+HTGEK
Sbjct: 31 CDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEK 89
>pdb|2EMC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
641- 673) Of Human Zinc Finger Protein 473
Length = 46
Score = 32.0 bits (71), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 80 TGERNYQCEFCHKAFRASSYLQNHRRIHTGEKP 112
T E ++C C K F S++L H+ IH GE P
Sbjct: 8 TKEHPFKCNECGKTFSHSAHLSKHQLIHAGENP 40
Score = 29.6 bits (65), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 57 FQCEYCGKDFARKYSLVVHRRIHTGER 83
F+C CGK F+ L H+ IH GE
Sbjct: 13 FKCNECGKTFSHSAHLSKHQLIHAGEN 39
Score = 27.7 bits (60), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYG 29
C+ CGK+F S L H +H G P G
Sbjct: 15 CNECGKTFSHSAHLSKHQLIHAGENPSG 42
>pdb|2EOH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
780- 812) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 32.0 bits (71), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 82 ERNYQCEFCHKAFRASSYLQNHRRIHTGEK 111
++ Y+C+ C K F +L H+R+HTGE+
Sbjct: 10 KKPYECKECRKTFIQIGHLNQHKRVHTGER 39
Score = 30.4 bits (67), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 55 KAFQCEYCGKDFARKYSLVVHRRIHTGERN 84
K ++C+ C K F + L H+R+HTGER+
Sbjct: 11 KPYECKECRKTFIQIGHLNQHKRVHTGERS 40
>pdb|2EOK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
441- 469) Of Human Zinc Finger Protein 268
Length = 42
Score = 32.0 bits (71), Expect = 0.18, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 48 ASLHSDVKAFQCEYCGKDFARKYSLVVHRRIHTG 81
+S S K + C CGK F K L+VH+ IHTG
Sbjct: 2 SSGSSGEKPYVCSDCGKAFTFKSQLIVHQGIHTG 35
Score = 30.4 bits (67), Expect = 0.52, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 80 TGERNYQCEFCHKAFRASSYLQNHRRIHTG 109
+GE+ Y C C KAF S L H+ IHTG
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVHQGIHTG 35
Score = 27.3 bits (59), Expect = 4.3, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 108 TGEKPHFCPVCNKMFRVRSDMKRHLNTH 135
+GEKP+ C C K F +S + H H
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVHQGIH 33
>pdb|4G9I|A Chain A, Crystal Structure Of T.Kodakarensis Hypf
pdb|4G9I|B Chain B, Crystal Structure Of T.Kodakarensis Hypf
pdb|4G9I|C Chain C, Crystal Structure Of T.Kodakarensis Hypf
pdb|4G9I|D Chain D, Crystal Structure Of T.Kodakarensis Hypf
pdb|4G9I|E Chain E, Crystal Structure Of T.Kodakarensis Hypf
pdb|4G9I|F Chain F, Crystal Structure Of T.Kodakarensis Hypf
Length = 772
Score = 31.6 bits (70), Expect = 0.24, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 26/66 (39%), Gaps = 6/66 (9%)
Query: 59 CEYCGKDFARKYSLVVHRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFCPVC 118
C CG F L R T + C+FC + +RR H +P CPVC
Sbjct: 131 CTNCGPRFTIIEDLPYDRENTTXKEFPXCDFCRSEYEDPL----NRRYHA--EPTACPVC 184
Query: 119 NKMFRV 124
+R+
Sbjct: 185 GPSYRL 190
>pdb|2EM0|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 31.6 bits (70), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 82 ERNYQCEFCHKAFRASSYLQNHRRIHTGEKP 112
E+ ++C C F +S L+ H+ +H GEKP
Sbjct: 10 EKTWKCRECDMCFSQASSLRLHQNVHVGEKP 40
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYG 29
C C F +++L++H VH+G KP G
Sbjct: 15 CRECDMCFSQASSLRLHQNVHVGEKPSG 42
Score = 26.9 bits (58), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 55 KAFQCEYCGKDFARKYSLVVHRRIHTGER 83
K ++C C F++ SL +H+ +H GE+
Sbjct: 11 KTWKCRECDMCFSQASSLRLHQNVHVGEK 39
>pdb|2EOY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
557- 589) Of Human Zinc Finger Protein 473
Length = 46
Score = 31.6 bits (70), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 82 ERNYQCEFCHKAFRASSYLQNHRRIHT 108
E+ ++C C K F S YL H RIHT
Sbjct: 10 EKCFKCNKCEKTFSCSKYLTQHERIHT 36
>pdb|2EPS|A Chain A, Solution Structure Of The 4th Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 54
Score = 31.2 bits (69), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 83 RNYQCEFCHKAFRASSYLQNH-RRIHTGEKPHFCPV 117
+ Y C+ C K F +L H +++HT E+PH C V
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 46
Score = 31.2 bits (69), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 55 KAFQCEYCGKDFARKYSLVVH-RRIHTGERNYQCEF 89
K + C+ CGK F+R L H +++HT ER ++C+
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 46
Score = 26.2 bits (56), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 26 KPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCE 60
KPY C+ CG+ F + L H +H+ + +C+
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQ 45
>pdb|2EPR|A Chain A, Solution Structure Of The Secound Zinc Finger Domain Of
Zinc Finger Protein 278
Length = 48
Score = 31.2 bits (69), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 83 RNYQCEFCHKAFRASSYLQNHRRIHTGEKPH 113
+ CE C K FR +L H+ H+GEKP+
Sbjct: 11 KQVACEICGKIFRDVYHLNRHKLSHSGEKPY 41
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 55 KAFQCEYCGKDFARKYSLVVHRRIHTGERNYQ 86
K CE CGK F Y L H+ H+GE+ Y
Sbjct: 11 KQVACEICGKIFRDVYHLNRHKLSHSGEKPYS 42
>pdb|2EMZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
628- 660) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 31.2 bits (69), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 55 KAFQCEYCGKDFARKYSLVVHRRIHTGERN 84
+ F+C CGK F R+ L H R+H+ E++
Sbjct: 11 RPFKCNECGKGFGRRSHLAGHLRLHSREKS 40
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 82 ERNYQCEFCHKAFRASSYLQNHRRIHTGEK 111
ER ++C C K F S+L H R+H+ EK
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGHLRLHSREK 39
>pdb|2EPV|A Chain A, Solution Structure Of The 20th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 44
Score = 30.8 bits (68), Expect = 0.37, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 55 KAFQCEYCGKDFARKYSLVVHRRIHTG 81
K ++C CGK F K L+VH R H G
Sbjct: 11 KPYECNECGKAFIWKSLLIVHERTHAG 37
Score = 28.1 bits (61), Expect = 2.9, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGL 25
C+ CGK+F + L VH R H G+
Sbjct: 15 CNECGKAFIWKSLLIVHERTHAGV 38
Score = 27.3 bits (59), Expect = 4.2, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 82 ERNYQCEFCHKAFRASSYLQNHRRIHTG 109
E+ Y+C C KAF S L H R H G
Sbjct: 10 EKPYECNECGKAFIWKSLLIVHERTHAG 37
>pdb|2LVR|A Chain A, Solution Structure Of Miz-1 Zinc Finger 8
Length = 30
Score = 30.8 bits (68), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 83 RNYQCEFCHKAFRASSYLQNHRRIHTGEK 111
+ Y C C + F LQ H RIHTGEK
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGEK 30
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 54 VKAFQCEYCGKDFARKYSLVVHRRIHTGER 83
+K + C +C + FA +L H RIHTGE+
Sbjct: 1 MKPYVCIHCQRQFADPGALQRHVRIHTGEK 30
>pdb|1SP2|A Chain A, Nmr Structure Of A Zinc Finger Domain From Transcription
Factor Sp1f2, Minimized Average Structure
pdb|1VA2|A Chain A, Solution Structure Of Transcription Factor Sp1 Dna
Binding Domain (Zinc Finger 2)
Length = 31
Score = 30.8 bits (68), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 55 KAFQC--EYCGKDFARKYSLVVHRRIHTGER 83
+ F C YCGK F R L H+R HTGE+
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 83 RNYQC--EFCHKAFRASSYLQNHRRIHTGEK 111
R + C +C K F S LQ H+R HTGEK
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
>pdb|2LV2|A Chain A, Solution Nmr Structure Of C2h2-Type Zinc-Fingers 4 And 5
From Human Insulinoma-Associated Protein 1 (Fragment
424-497), Northeast Structural Genomics Consortium
Target Hr7614b
Length = 85
Score = 30.8 bits (68), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 25/54 (46%)
Query: 50 LHSDVKAFQCEYCGKDFARKYSLVVHRRIHTGERNYQCEFCHKAFRASSYLQNH 103
L + + C CG+ FA K + H R+ + + C++C F +S L H
Sbjct: 22 LSASAECHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRH 75
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 30 CEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYSLVVH 75
C VCG F G + H LH+ + F C+YC F L H
Sbjct: 31 CPVCGESFASKGAQERHLRLLHA-AQVFPCKYCPATFYSSPGLTRH 75
Score = 26.2 bits (56), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 113 HFCPVCNKMFRVRSDMKRHL 132
H CPVC + F + +RHL
Sbjct: 29 HLCPVCGESFASKGAQERHL 48
>pdb|2KVF|A Chain A, Structure Of The Three-Cys2his2 Domain Of Mouse Testis
Zinc Finger Protein
Length = 28
Score = 30.8 bits (68), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 54 VKAFQCEYCGKDFARKYSLVVHRRIHTG 81
++ + C CGK F+ K+ + H R+HTG
Sbjct: 1 MRPYSCSVCGKRFSLKHQMETHYRVHTG 28
Score = 26.9 bits (58), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 83 RNYQCEFCHKAFRASSYLQNHRRIHTG 109
R Y C C K F ++ H R+HTG
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVHTG 28
>pdb|2EN2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
598- 626) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 30.8 bits (68), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 82 ERNYQCEFCHKAFRASSYLQNHRRIHTGEKP 112
E+ Y+CE C F ++L+ H IHTG P
Sbjct: 9 EKPYKCETCGARFVQVAHLRAHVLIHTGSGP 39
Score = 27.3 bits (59), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 55 KAFQCEYCGKDFARKYSLVVHRRIHTG 81
K ++CE CG F + L H IHTG
Sbjct: 10 KPYKCETCGARFVQVAHLRAHVLIHTG 36
Score = 26.9 bits (58), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 12/21 (57%)
Query: 26 KPYGCEVCGRHFRQWGDLKYH 46
KPY CE CG F Q L+ H
Sbjct: 10 KPYKCETCGARFVQVAHLRAH 30
>pdb|2EOJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
355- 385) Of Human Zinc Finger Protein 268
Length = 44
Score = 30.8 bits (68), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 57 FQCEYCGKDFARKYSLVVHRRIHTGE 82
++C CGK F+RK LV H++ H+G+
Sbjct: 13 YECCECGKVFSRKDQLVSHQKTHSGQ 38
>pdb|2YSO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
656- 688) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 30.0 bits (66), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 55 KAFQCEYCGKDFARKYSLVVHRRIHTGERN 84
K+ QC CG+ F + SL+ H+ +H G++N
Sbjct: 11 KSHQCRECGEIFFQYVSLIEHQVLHMGQKN 40
>pdb|2YTT|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
204- 236) Of Human Zinc Finger Protein 473
Length = 46
Score = 30.0 bits (66), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 55 KAFQCEYCGKDFARKYSLVVHRRIHTGER 83
K +QC CGK F+ Y L H HT E+
Sbjct: 11 KPYQCSECGKSFSGSYRLTQHWITHTREK 39
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 83 RNYQCEFCHKAFRASSYLQNHRRIHTGEKP 112
+ YQC C K+F S L H HT EKP
Sbjct: 11 KPYQCSECGKSFSGSYRLTQHWITHTREKP 40
>pdb|3IUF|A Chain A, Crystal Structure Of The C2h2-Type Zinc Finger Domain Of
Human Ubi-D4
Length = 48
Score = 29.6 bits (65), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 26 KPYGCEVCGRHFRQWGDLKYHKASLH 51
KPY C++CG+ ++ L YH A H
Sbjct: 6 KPYACDICGKRYKNRPGLSYHYAHSH 31
>pdb|1ARF|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 29.6 bits (65), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 84 NYQCEFCHKAFRASSYLQNHRRIHTGEK 111
++ CE C +AF YL+ H R HT EK
Sbjct: 2 SFVCEVCTRAFARQEYLKRHYRSHTNEK 29
Score = 27.3 bits (59), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 56 AFQCEYCGKDFARKYSLVVHRRIHTGER 83
+F CE C + FAR+ L H R HT E+
Sbjct: 2 SFVCEVCTRAFARQEYLKRHYRSHTNEK 29
>pdb|2M0F|A Chain A, Solution Structure Of Miz-1 Zinc Finger 7
Length = 29
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 85 YQCEFCHKAFRASSYLQNHRRIHTGEK 111
+C C K F S L+ H RIH+GEK
Sbjct: 3 LKCRECGKQFTTSGNLKRHLRIHSGEK 29
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 57 FQCEYCGKDFARKYSLVVHRRIHTGER 83
+C CGK F +L H RIH+GE+
Sbjct: 3 LKCRECGKQFTTSGNLKRHLRIHSGEK 29
Score = 26.9 bits (58), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLK 26
C CGK F +S LK H R+H G K
Sbjct: 5 CRECGKQFTTSGNLKRHLRIHSGEK 29
>pdb|1ARE|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 56 AFQCEYCGKDFARKYSLVVHRRIHTGER 83
+F CE C + FAR+ +L H R HT E+
Sbjct: 2 SFVCEVCTRAFARQEALKRHYRSHTNEK 29
Score = 26.6 bits (57), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 84 NYQCEFCHKAFRASSYLQNHRRIHTGEK 111
++ CE C +AF L+ H R HT EK
Sbjct: 2 SFVCEVCTRAFARQEALKRHYRSHTNEK 29
>pdb|1X4H|A Chain A, Solution Structure Of Rrm Domain In Rna-Binding Protein
28
Length = 111
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 31 EVCGRHFRQWGDLKYHKASLHSDVK 55
E G +Q+GDLKY + LH D +
Sbjct: 30 EALGEVLQQFGDLKYVRVVLHPDTE 54
>pdb|1ZNM|A Chain A, A Zinc Finger With An Artificial Beta-Turn, Original
Sequence Taken From The Third Zinc Finger Domain Of The
Human Transcriptional Repressor Protein Yy1 (Ying And
Yang 1, A Delta Transcription Factor), Nmr, 34
Structures
Length = 28
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
Query: 57 FQCEY--CGKDFARKYSLVVHRRIHTG 81
FQC + CGK F+ ++L H +IHTG
Sbjct: 2 FQCTFXCCGKRFSLDFNLKTHVKIHTG 28
>pdb|1P7A|A Chain A, Solution Stucture Of The Third Zinc Finger From Bklf
Length = 37
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 54 VKAFQCEYCGKDFARKYSLVVHRRIH 79
+K FQC C + F+R L +HR+ H
Sbjct: 9 IKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 26.6 bits (57), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 77 RIHTGERNYQCEFCHKAFRASSYLQNHRRIH 107
R TG + +QC C ++F S +L HR+ H
Sbjct: 4 RGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
>pdb|2M0D|A Chain A, Solution Structure Of Miz-1 Zinc Finger 5
Length = 30
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 54 VKAFQCEYCGKDFARKYSLVVHRRIHTGER 83
+K +QC+YCG+ F+ S + H H ++
Sbjct: 1 MKPYQCDYCGRSFSDPTSKMRHLETHDTDK 30
>pdb|2EOX|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
315- 345) Of Human Zinc Finger Protein 473
Length = 44
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 57 FQCEYCGKDFARKYSLVVHRRIHT 80
+ C CGK F R + L H++IHT
Sbjct: 13 YNCNECGKAFTRIFHLTRHQKIHT 36
>pdb|2EPX|A Chain A, Solution Structure Of The Third C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 28 Homolog
Length = 47
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 55 KAFQCEYCGKDFARKYSLVVH-RRIHTGER 83
K ++C CGK F + SL+ H R HTGE+
Sbjct: 11 KPYECIECGKAFIQNTSLIRHWRYYHTGEK 40
Score = 27.3 bits (59), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 82 ERNYQCEFCHKAFRASSYLQNH-RRIHTGEKP 112
++ Y+C C KAF ++ L H R HTGEKP
Sbjct: 10 KKPYECIECGKAFIQNTSLIRHWRYYHTGEKP 41
>pdb|2EPW|A Chain A, Solution Structure Of The 24th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 46
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 55 KAFQCEYCGKDFARKYSLVVHRRIHTGER 83
K +C CGK F K L++H+R H ++
Sbjct: 11 KPCKCTECGKAFCWKSQLIMHQRTHVDDK 39
>pdb|2ELR|A Chain A, Solution Structure Of The 15th C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 28.1 bits (61), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 111 KPHFCPVCNKMFRVRSDMKRHLNTHNVDA 139
K H C +C K F+ + +K H H D
Sbjct: 8 KTHLCDMCGKKFKSKGTLKSHKLLHTADG 36
Score = 27.7 bits (60), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 48 ASLHSDVKAFQCEYCGKDFARKYSLVVHRRIHTGE 82
S S K C+ CGK F K +L H+ +HT +
Sbjct: 1 GSSGSSGKTHLCDMCGKKFKSKGTLKSHKLLHTAD 35
Score = 27.7 bits (60), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 8/28 (28%), Positives = 18/28 (64%)
Query: 83 RNYQCEFCHKAFRASSYLQNHRRIHTGE 110
+ + C+ C K F++ L++H+ +HT +
Sbjct: 8 KTHLCDMCGKKFKSKGTLKSHKLLHTAD 35
Score = 26.6 bits (57), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 1 MCDTCGKSFFSSTALKVHNRVH 22
+CD CGK F S LK H +H
Sbjct: 11 LCDMCGKKFKSKGTLKSHKLLH 32
>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein
Kinase C Beta Ii
Length = 674
Score = 28.1 bits (61), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 10/69 (14%)
Query: 55 KAFQCEYCGKDFARKYSLVVHRRIHTGERNYQCEFCHKAFRASSYLQNHR-RIHTGEKPH 113
+ FQC+ C S VVH+R H + C K + H+ +IHT P
Sbjct: 64 QGFQCQVC--------SFVVHKRCHEF-VTFSCPGADKGPASDDPRSKHKFKIHTYSSPT 114
Query: 114 FCPVCNKMF 122
FC C +
Sbjct: 115 FCDHCGSLL 123
>pdb|2ELT|A Chain A, Solution Structure Of The 3rd C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 48 ASLHSDVKAFQCEYCGKDFARKYSLVVHRRIHTGER 83
S S K ++C C A K +L VH R HTGE+
Sbjct: 1 GSSGSSGKPYKCPQCSYASAIKANLNVHLRKHTGEK 36
>pdb|2L1O|A Chain A, Zinc To Cadmium Replacement In The A. Thaliana Superman
Cys2his2 Zinc Finger Induces Structural Rearrangements
Of Typical Dna Base Determinant Positions
pdb|1NJQ|A Chain A, Nmr Structure Of The Single Qalggh Zinc Finger Domain From
Arabidopsis Thaliana Superman Protein
Length = 39
Score = 27.7 bits (60), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 83 RNYQCEFCHKAFRASSYLQNHRRIH 107
R+Y C FC + FR++ L H +H
Sbjct: 5 RSYTCSFCKREFRSAQALGGHMNVH 29
>pdb|2EOU|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
370- 400) Of Human Zinc Finger Protein 473
Length = 44
Score = 27.7 bits (60), Expect = 3.0, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 86 QCEFCHKAFRASSYLQNHRRIHTGE 110
+C+ C K FR SS L H+ +H GE
Sbjct: 14 ECQECGKIFRHSSLLIEHQALHAGE 38
>pdb|1ARD|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 27.7 bits (60), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 56 AFQCEYCGKDFARKYSLVVHRRIHTGER 83
+F CE C + FAR+ L H R HT E+
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 27.3 bits (59), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 84 NYQCEFCHKAFRASSYLQNHRRIHTGEK 111
++ CE C +AF +L+ H R HT EK
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTNEK 29
>pdb|3P1V|A Chain A, Crystal Structure Of A Metallo-Endopeptidases
(Bacova_00663) From Bacteroides Ovatus At 1.93 A
Resolution
pdb|3P1V|B Chain B, Crystal Structure Of A Metallo-Endopeptidases
(Bacova_00663) From Bacteroides Ovatus At 1.93 A
Resolution
Length = 407
Score = 27.3 bits (59), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 105 RIHTGEKPHFCPVCNKMFR 123
R T E P FCPVC + R
Sbjct: 381 RXKTNEYPEFCPVCQRAIR 399
>pdb|2EN3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
796- 828) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 27.3 bits (59), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 55 KAFQCEYCGKDFARKYSLVVHRRIH 79
K FQC+ CG +F+ SL H R H
Sbjct: 11 KPFQCKECGMNFSWSCSLFKHLRSH 35
>pdb|2ELQ|A Chain A, Solution Structure Of The 14th C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 27.3 bits (59), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 111 KPHFCPVCNKMFRVRSDMKRHLNTHNVD 138
KP C +C R +S++K H+N H+ +
Sbjct: 8 KPFKCSLCEYATRSKSNLKAHMNRHSTE 35
>pdb|2YTE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
484- 512) Of Human Zinc Finger Protein 473
Length = 42
Score = 27.3 bits (59), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 80 TGERNYQCEFCHKAFRASSYLQNHRRIHT 108
+GE+ Y C C + F ++ L H+++HT
Sbjct: 6 SGEKPYSCAECKETFSDNNRLVQHQKMHT 34
>pdb|7ZNF|A Chain A, Alternating Zinc Fingers In The Human Male Associated
Protein Zfy: 2d Nmr Structure Of An Even Finger And
Implications For "jumping-Linker" Dna Recognition
Length = 30
Score = 26.9 bits (58), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 83 RNYQCEFCHKAFRASSYLQNHRRI-HTGEK 111
+ YQC++C K F SS L+ H + H+ EK
Sbjct: 1 KTYQCQYCEKRFADSSNLKTHIKTKHSKEK 30
>pdb|2WBT|A Chain A, The Structure Of A Double C2h2 Zinc Finger Protein From A
Hyperthermophilic Archaeal Virus In The Absence Of Dna
pdb|2WBT|B Chain B, The Structure Of A Double C2h2 Zinc Finger Protein From A
Hyperthermophilic Archaeal Virus In The Absence Of Dna
Length = 129
Score = 26.9 bits (58), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 3/55 (5%)
Query: 84 NYQCEFCHKAFRASSYLQNHRRIHTGEKPHFCPVCNKMFRVRSDMKRHL-NTHNV 137
+ C C F +S L+ H R E CPVC K F H+ HN+
Sbjct: 74 QFVCPLCLMPFSSSVSLKQHIRY--TEHTKVCPVCKKEFTSTDSALDHVCKKHNI 126
>pdb|1U85|A Chain A, Arg326-Trp Mutant Of The Third Zinc Finger Of Bklf
Length = 33
Score = 26.9 bits (58), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 54 VKAFQCEYCGKDFARKYSLVVHRRIH 79
+K FQC C F+R L +HR+ H
Sbjct: 5 IKPFQCPDCDWSFSRSDHLALHRKRH 30
>pdb|2EPC|A Chain A, Solution Structure Of Zinc Finger Domain 7 In Zinc
Finger Protein 32
Length = 42
Score = 26.6 bits (57), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 57 FQCEYCGKDFARKYSLVVHRR 77
+ C CGK F ++ SL VH+R
Sbjct: 12 YLCGQCGKSFTQRGSLAVHQR 32
>pdb|1YUI|A Chain A, Solution Nmr Structure Of The Gaga FactorDNA COMPLEX,
Regularized Mean Structure
pdb|1YUJ|A Chain A, Solution Nmr Structure Of The Gaga FactorDNA COMPLEX, 50
Structures
Length = 54
Score = 26.2 bits (56), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 109 GEKPHFCPVCNKMFRVRSDMKRHLN 133
E+P CP+C + R +++RHL
Sbjct: 21 SEQPATCPICYAVIRQSRNLRRHLE 45
>pdb|1XPA|A Chain A, Solution Structure Of The Dna-And Rpa-Binding Domain Of
The Human Repair Factor Xpa, Nmr, 1 Structure
Length = 122
Score = 26.2 bits (56), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 43/108 (39%), Gaps = 8/108 (7%)
Query: 59 CEYCGKDFARKYSLVVHRRIHTGERNYQCEFCHKAFRAS----SYLQNHRRIHTGEKP-H 113
CE CGK+F Y L+ H + T + + HK + YL + E P
Sbjct: 8 CEECGKEFMDSY-LMNHFDLPTCDNCRDADDKHKLITKTEAKQEYLLKDCDLEKREPPLK 66
Query: 114 FCPVCNKMFRVRSDMKRHLNTHNVDARQYLTVTGSQTGAPIKKEPKQE 161
F N DMK +L V ++ L V GSQ KE +QE
Sbjct: 67 FIVKKNPHHSQWGDMKLYLKLQIV--KRSLEVWGSQEALEEAKEVRQE 112
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.136 0.457
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,379,433
Number of Sequences: 62578
Number of extensions: 206935
Number of successful extensions: 1564
Number of sequences better than 100.0: 204
Number of HSP's better than 100.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 554
Number of HSP's gapped (non-prelim): 878
length of query: 171
length of database: 14,973,337
effective HSP length: 92
effective length of query: 79
effective length of database: 9,216,161
effective search space: 728076719
effective search space used: 728076719
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 48 (23.1 bits)