RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12258
(171 letters)
>gnl|CDD|227381 COG5048, COG5048, FOG: Zn-finger [General function prediction
only].
Length = 467
Score = 38.9 bits (90), Expect = 7e-04
Identities = 20/57 (35%), Positives = 23/57 (40%), Gaps = 4/57 (7%)
Query: 83 RNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFCPVCNKMFRVRSDM---KRHLNTHN 136
R C C +F +L H R HTGEKP C S RHL TH+
Sbjct: 32 RPDSCPNCTDSFSRLEHLTRHIRSHTGEKPSQCSYSGCDKS-FSRPLELSRHLRTHH 87
Score = 35.4 bits (81), Expect = 0.009
Identities = 34/139 (24%), Positives = 49/139 (35%), Gaps = 11/139 (7%)
Query: 5 CGKSFFSSTALKVHNRVHLGLKPYGC--EVCGRHFRQ----WGDLKYHKASLHSDVKAFQ 58
CGK F + ALK H +H + P F + + K +
Sbjct: 329 CGKLFSRNDALKRHILLHTSISPAKEKLLNSSSKFSPLLNNEPPQSLQQYKDLKNDKKSE 388
Query: 59 CEY--CGKDFARKYSLVVHRRIHTGERNYQCEF--CHKAFRASSYLQNHRRIHTGEKPHF 114
C ++F R +L +H H R Y C+ C K+F L H++IHT
Sbjct: 389 TLSNSCIRNFKRDSNLSLHIITHLSFRPYNCKNPPCSKSFNRHYNLIPHKKIHT-NHAPL 447
Query: 115 CPVCNKMFRVRSDMKRHLN 133
K FR D+ H
Sbjct: 448 LCSILKSFRRDLDLSNHGK 466
Score = 30.8 bits (69), Expect = 0.38
Identities = 18/61 (29%), Positives = 22/61 (36%), Gaps = 2/61 (3%)
Query: 57 FQCEYCGKDFARKYSLVVHRRIHTGERNYQCEFCHKAFRASSYLQNHR--RIHTGEKPHF 114
C C F+R L H R HTGE+ QC + S L+ R R H
Sbjct: 34 DSCPNCTDSFSRLEHLTRHIRSHTGEKPSQCSYSGCDKSFSRPLELSRHLRTHHNNPSDL 93
Query: 115 C 115
Sbjct: 94 N 94
>gnl|CDD|222150 pfam13465, zf-H2C2_2, Zinc-finger double domain.
Length = 26
Score = 34.7 bits (80), Expect = 0.001
Identities = 15/24 (62%), Positives = 17/24 (70%)
Query: 99 YLQNHRRIHTGEKPHFCPVCNKMF 122
L+ H R HTGEKP+ CPVC K F
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSF 24
Score = 33.5 bits (77), Expect = 0.003
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 71 SLVVHRRIHTGERNYQCEFCHKAF 94
+L H R HTGE+ Y+C C K+F
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSF 24
Score = 25.4 bits (56), Expect = 2.6
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 14 ALKVHNRVHLGLKPYGCEVCGRHFRQ 39
L+ H R H G KPY C VCG+ F
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSFSS 26
Score = 25.4 bits (56), Expect = 2.7
Identities = 9/27 (33%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 42 DLKYHKASLHSDVKAFQCEYCGKDFAR 68
+L+ H + H+ K ++C CGK F+
Sbjct: 1 NLRRHMRT-HTGEKPYKCPVCGKSFSS 26
>gnl|CDD|227516 COG5189, SFP1, Putative transcriptional repressor regulating G2/M
transition [Transcription / Cell division and chromosome
partitioning].
Length = 423
Score = 35.5 bits (81), Expect = 0.008
Identities = 20/88 (22%), Positives = 31/88 (35%), Gaps = 12/88 (13%)
Query: 19 NRVHLGLKPYGCEV--CGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYSLVVHR 76
KPY C V C + ++ LKYH H + S
Sbjct: 341 MLKVKDGKPYKCPVEGCNKKYKNQNGLKYHMLHGH----------QNQKLHENPSPEKMN 390
Query: 77 RIHTGERNYQCEFCHKAFRASSYLQNHR 104
++ Y+CE C K ++ + L+ HR
Sbjct: 391 IFSAKDKPYRCEVCDKRYKNLNGLKYHR 418
Score = 33.9 bits (77), Expect = 0.027
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 18 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLH 51
N KPY CEVC + ++ LKYH+ H
Sbjct: 389 MNIFSAKDKPYRCEVCDKRYKNLNGLKYHRKHSH 422
Score = 29.7 bits (66), Expect = 0.88
Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 21/72 (29%)
Query: 81 GERNYQCEF--CHKAFRASSYLQNHRR-------------------IHTGEKPHFCPVCN 119
+ Y+C C+K ++ + L+ H +KP+ C VC+
Sbjct: 346 DGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCD 405
Query: 120 KMFRVRSDMKRH 131
K ++ + +K H
Sbjct: 406 KRYKNLNGLKYH 417
>gnl|CDD|227561 COG5236, COG5236, Uncharacterized conserved protein, contains RING
Zn-finger [General function prediction only].
Length = 493
Score = 33.1 bits (75), Expect = 0.055
Identities = 25/103 (24%), Positives = 38/103 (36%), Gaps = 14/103 (13%)
Query: 33 CGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFA------RKYSLVVHRRIHTGERNYQ 86
C R +LK H + H V +C KDF R +L H+ E ++
Sbjct: 159 CHRRCGSLKELKKHYKAQHGFVLCSECIGNKKDFWNEIRLFRSSTLRDHKNGGLEEEGFK 218
Query: 87 ----CEFCHKAFRASSYLQNHRRIHTGEKPHFCPVCNKMFRVR 125
C FC F Y + R H + C +C+ + +R
Sbjct: 219 GHPLCIFCKIYF----YDDDELRRHCRLRHEACHICDMVGPIR 257
>gnl|CDD|200998 pfam00096, zf-C2H2, Zinc finger, C2H2 type. The C2H2 zinc finger
is the classical zinc finger domain. The two conserved
cysteines and histidines co-ordinate a zinc ion. The
following pattern describes the zinc finger.
#-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can
be any amino acid, and numbers in brackets indicate the
number of residues. The positions marked # are those
that are important for the stable fold of the zinc
finger. The final position can be either his or cys.
The C2H2 zinc finger is composed of two short beta
strands followed by an alpha helix. The amino terminal
part of the helix binds the major groove in DNA binding
zinc fingers. The accepted consensus binding sequence
for Sp1 is usually defined by the asymmetric
hexanucleotide core GGGCGG but this sequence does not
include, among others, the GAG (=CTC) repeat that
constitutes a high-affinity site for Sp1 binding to the
wt1 promoter.
Length = 22
Score = 28.9 bits (65), Expect = 0.13
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 58 QCEYCGKDFARKYSLVVHRRIH 79
+C CGK F+RK +L H R H
Sbjct: 1 KCPDCGKSFSRKSNLKRHLRTH 22
Score = 27.7 bits (62), Expect = 0.32
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 115 CPVCNKMFRVRSDMKRHLNTH 135
CP C K F +S++KRHL TH
Sbjct: 2 CPDCGKSFSRKSNLKRHLRTH 22
Score = 27.7 bits (62), Expect = 0.37
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 86 QCEFCHKAFRASSYLQNHRRIH 107
+C C K+F S L+ H R H
Sbjct: 1 KCPDCGKSFSRKSNLKRHLRTH 22
Score = 25.4 bits (56), Expect = 2.2
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 1 MCDTCGKSFFSSTALKVHNRVH 22
C CGKSF + LK H R H
Sbjct: 1 KCPDCGKSFSRKSNLKRHLRTH 22
>gnl|CDD|212564 cd11674, lambda-1, inner capsid protein lambda-1 or VP3. The
reovirus inner capsid protein lambda-1 displays
nucleoside triphosphate phosphohydrolase (NTPase),
RNA-5'-triphosphatase (RTPase), and RNA helicase
activity and may play a role in the transcription of the
virus genome, the unwinding or reannealing of
double-stranded RNA during RNA synthesis. The RTPase
activity constitutes the first step in the capping of
RNA, resulting in a 5'-diphosphorylated RNA plus-strand.
lambda1 is an Orthoreovirus core protein, VP3 is the
homologous core protein in Aquareoviruses.
Length = 1166
Score = 30.9 bits (70), Expect = 0.32
Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 1/45 (2%)
Query: 101 QNHRRIHTGEKPHFCPVCNKMFRVRSDMKRHLNT-HNVDARQYLT 144
Q+ + + C VC F + H T H++ A LT
Sbjct: 62 QSKKATPINPSSYVCNVCMAEFSSMDQLAEHQRTTHSIGASSLLT 106
Score = 30.5 bits (69), Expect = 0.51
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 28 YGCEVCGRHFRQWGDLKYHKASLHSDVKA 56
Y C VC F L H+ + HS +
Sbjct: 74 YVCNVCMAEFSSMDQLAEHQRTTHSIGAS 102
>gnl|CDD|197676 smart00355, ZnF_C2H2, zinc finger.
Length = 23
Score = 27.8 bits (62), Expect = 0.37
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 57 FQCEYCGKDFARKYSLVVHRRIH 79
++C CGK F K +L H R H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 27.4 bits (61), Expect = 0.42
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 113 HFCPVCNKMFRVRSDMKRHLNTH 135
+ CP C K+F+ +S ++ H+ TH
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 27.4 bits (61), Expect = 0.47
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 85 YQCEFCHKAFRASSYLQNHRRIH 107
Y+C C K F++ S L+ H R H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 24.3 bits (53), Expect = 5.6
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 2 CDTCGKSFFSSTALKVHNRVH 22
C CGK F S +AL+ H R H
Sbjct: 3 CPECGKVFKSKSALREHMRTH 23
>gnl|CDD|179595 PRK03564, PRK03564, formate dehydrogenase accessory protein FdhE;
Provisional.
Length = 309
Score = 30.4 bits (69), Expect = 0.45
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 103 HRRIHTGEKPHFCPVCNKM 121
R GE+ FCPVC M
Sbjct: 178 KARAEYGEQRQFCPVCGSM 196
>gnl|CDD|226535 COG4049, COG4049, Uncharacterized protein containing archaeal-type
C2H2 Zn-finger [General function prediction only].
Length = 65
Score = 28.0 bits (62), Expect = 0.59
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 109 GEKPHFCPVCNKMFRVRSDMKRHLNTHNVDARQYLTVTGSQTGAPIKKE 157
GE+ CP C +FR R D RH+N A +L G G +KK+
Sbjct: 14 GEEFLRCPRCGMVFRRRKDYIRHVNK----AHGWLFGRGKPKGKRLKKK 58
>gnl|CDD|165133 PHA02768, PHA02768, hypothetical protein; Provisional.
Length = 55
Score = 27.7 bits (61), Expect = 0.64
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 115 CPVCNKMFRVRSDMKRHLNTHNVDAR 140
CP+C +++ R M HL HN + +
Sbjct: 8 CPICGEIYIKRKSMITHLRKHNTNLK 33
Score = 24.6 bits (53), Expect = 8.9
Identities = 11/47 (23%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 56 AFQCEYCGKDFARKYSLVVHRRIHTGERNYQCEFCHK-AFRASSYLQ 101
++C CG+ + ++ S++ H R H N + C + + R Y++
Sbjct: 5 GYECPICGEIYIKRKSMITHLRKHN--TNLKLSNCKRISLRTGEYIE 49
>gnl|CDD|177301 PHA00733, PHA00733, hypothetical protein.
Length = 128
Score = 28.7 bits (64), Expect = 0.90
Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Query: 85 YQCEFCHKAFRASSYLQNHRRIHTGEKPHFCPVCNKMFRVRSDMKRHL-NTHNV 137
Y C C F +S L+ H R K CPVC K FR H+ HN+
Sbjct: 74 YVCPLCLMPFSSSVSLKQHIRYTEHSK--VCPVCGKEFRNTDSTLDHVCKKHNI 125
Score = 27.1 bits (60), Expect = 3.1
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 5/50 (10%)
Query: 27 PYGCEVCGRHFRQWGDLKYH-KASLHSDVKAFQCEYCGKDFARKYSLVVH 75
PY C +C F LK H + + HS V C CGK+F S + H
Sbjct: 73 PYVCPLCLMPFSSSVSLKQHIRYTEHSKV----CPVCGKEFRNTDSTLDH 118
Score = 26.4 bits (58), Expect = 6.0
Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 2/50 (4%)
Query: 54 VKAFQCEYCGKDFARKYSLVVHRRIHTGERNYQCEFCHKAFRASSYLQNH 103
V + C C F+ SL H I E + C C K FR + +H
Sbjct: 71 VSPYVCPLCLMPFSSSVSLKQH--IRYTEHSKVCPVCGKEFRNTDSTLDH 118
>gnl|CDD|235290 PRK04351, PRK04351, hypothetical protein; Provisional.
Length = 149
Score = 28.3 bits (64), Expect = 1.2
Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 17/64 (26%)
Query: 35 RHFRQW----GDLKYHKASLHSDVKAF---QCEYCGKDFARKYSLVVHRRIHTGERNYQC 87
R F++ G +Y K +C+ CG+ + RK RRI+T + Y+C
Sbjct: 86 RDFKELLKQVGGPRY--CPPLPSQKKNYLYECQSCGQQYLRK------RRINT--KRYRC 135
Query: 88 EFCH 91
C
Sbjct: 136 GKCR 139
>gnl|CDD|220861 pfam10720, DUF2515, Protein of unknown function (DUF2515). This
family is conserved in Firmicutes. Several members are
annotated as YppC. The function is not known.
Length = 306
Score = 28.8 bits (65), Expect = 1.2
Identities = 13/60 (21%), Positives = 19/60 (31%), Gaps = 15/60 (25%)
Query: 74 VHRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFCPVCNKMFRVRSDMKRHLN 133
+ RI G++ F H +S Y HTG R D + +L
Sbjct: 194 LDERIELGKKLASLLF-HPKLYSSFYDFALSTPHTGS--------------RFDYEPYLF 238
>gnl|CDD|150045 pfam09237, GAGA, GAGA factor. Members of this family bind to a
5'-GAGAG-3' DNA consensus binding site, and contain a
Cys2-His2 zinc finger core as well as an N-terminal
extension containing two highly basic regions. The zinc
finger core binds in the DNA major groove and recognises
the first three GAG bases of the consensus in a manner
similar to that seen in other classical zinc finger-DNA
complexes. The second basic region forms a helix that
interacts in the major groove recognising the last G of
the consensus, while the first basic region wraps around
the DNA in the minor groove and recognises the A in the
fourth position of the consensus sequence.
Length = 54
Score = 26.1 bits (57), Expect = 2.4
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 110 EKPHFCPVCNKMFRVRSDMKRHL 132
E+P CP+C + R +++RHL
Sbjct: 22 EQPATCPICQAVIRQSRNLRRHL 44
>gnl|CDD|177468 PHA02686, PHA02686, hypothetical protein; Provisional.
Length = 138
Score = 27.6 bits (61), Expect = 2.5
Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
Query: 14 ALKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAF-QCEYCGKDFARKYSL 72
AL+V RV GL P VC R + A + +AF E+ G D A +Y
Sbjct: 4 ALRVAARVVDGLSPLDVAVCLCQLRGEAPERRFPALDEASGEAFLDFEFAGGDVASRYLS 63
Query: 73 VVHRRIHTGER 83
+ R + ER
Sbjct: 64 MCTRELCAAER 74
>gnl|CDD|204841 pfam12171, zf-C2H2_jaz, Zinc-finger double-stranded RNA-binding.
This domain family is found in archaea and eukaryotes,
and is approximately 30 amino acids in length. The
mammalian members of this group occur multiple times
along the protein, joined by flexible linkers, and are
referred to as JAZ - dsRNA-binding ZF protein -
zinc-fingers. The JAZ proteins are expressed in all
tissues tested and localise in the nucleus, particularly
the nucleolus. JAZ preferentially binds to
double-stranded (ds) RNA or RNA/DNA hybrids rather than
DNA. In addition to binding double-stranded RNA, these
zinc-fingers are required for nucleolar localisation.
Length = 27
Score = 25.2 bits (56), Expect = 2.5
Identities = 6/23 (26%), Positives = 13/23 (56%)
Query: 112 PHFCPVCNKMFRVRSDMKRHLNT 134
+C C+K F+ + ++ HL +
Sbjct: 1 QFYCVACDKYFKSENALENHLKS 23
>gnl|CDD|197732 smart00451, ZnF_U1, U1-like zinc finger. Family of C2H2-type zinc
fingers, present in matrin, U1 small nuclear
ribonucleoprotein C and other RNA-binding proteins.
Length = 35
Score = 25.3 bits (56), Expect = 3.1
Identities = 6/26 (23%), Positives = 10/26 (38%)
Query: 111 KPHFCPVCNKMFRVRSDMKRHLNTHN 136
+C +CN F ++ HL
Sbjct: 2 GGFYCKLCNVTFTDEISVEAHLKGKK 27
>gnl|CDD|206065 pfam13894, zf-C2H2_4, C2H2-type zinc finger. This family contains
a number of divergent C2H2 type zinc fingers.
Length = 24
Score = 24.9 bits (54), Expect = 4.1
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 113 HFCPVCNKMFRVRSDMKRHLNTH 135
CP+C K F + +KRHL H
Sbjct: 1 FKCPLCGKSFSSKDALKRHLRKH 23
Score = 24.5 bits (53), Expect = 5.0
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 57 FQCEYCGKDFARKYSLVVHRRIH 79
F+C CGK F+ K +L H R H
Sbjct: 1 FKCPLCGKSFSSKDALKRHLRKH 23
>gnl|CDD|173271 PRK14810, PRK14810, formamidopyrimidine-DNA glycosylase;
Provisional.
Length = 272
Score = 27.2 bits (60), Expect = 4.4
Identities = 13/41 (31%), Positives = 15/41 (36%), Gaps = 11/41 (26%)
Query: 80 TGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFCPVCNK 120
TGE C C R R + G H+CP C K
Sbjct: 243 TGE---PCLNCKTPIR--------RVVVAGRSSHYCPHCQK 272
>gnl|CDD|222704 pfam14353, CpXC, CpXC protein. This presumed domain is
functionally uncharacterized. This domain is found in
bacteria and archaea, and is typically between 122 and
134 amino acids in length. It contains four conserved
cysteines forming two CpXC motifs.
Length = 128
Score = 26.2 bits (58), Expect = 5.5
Identities = 12/62 (19%), Positives = 19/62 (30%), Gaps = 16/62 (25%)
Query: 30 CEVCGRHFRQWGDLKYHK---ASLHSDVKA---------FQCEYCGKDFARKYSLVVHRR 77
C CG F + + A +++ F C CG +F Y + H
Sbjct: 4 CPSCGHEF----EAEVWTSVNADEDPELREAILDGTLFTFTCPSCGHEFRLDYPFLYHDP 59
Query: 78 IH 79
Sbjct: 60 EK 61
>gnl|CDD|219131 pfam06676, DUF1178, Protein of unknown function (DUF1178). This
family consists of several hypothetical bacterial
proteins of around 150 residues in length. The function
of this family is unknown.
Length = 145
Score = 26.4 bits (59), Expect = 6.1
Identities = 11/25 (44%), Positives = 13/25 (52%), Gaps = 5/25 (20%)
Query: 58 QCEYCGKDFARKYSLVVHRRIHTGE 82
EY G+ FA + RRIH GE
Sbjct: 90 NSEYVGERFAEE-----ARRIHYGE 109
>gnl|CDD|236170 PRK08166, PRK08166, NADH dehydrogenase subunit G; Validated.
Length = 791
Score = 26.8 bits (60), Expect = 6.3
Identities = 14/30 (46%), Positives = 15/30 (50%), Gaps = 11/30 (36%)
Query: 92 KAFRASS---YLQNHRRIHTGEKPHFCPVC 118
KAFRAS + NH PH CPVC
Sbjct: 85 KAFRASVVEWLMTNH--------PHDCPVC 106
>gnl|CDD|203088 pfam04780, DUF629, Protein of unknown function (DUF629). This
family represents a region of several plant proteins of
unknown function. A C2H2 zinc finger is predicted in
this region in some family members, but the spacing
between the cysteine residues is not conserved
throughout the family.
Length = 463
Score = 26.6 bits (59), Expect = 6.8
Identities = 13/29 (44%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 1 MCDTCGKSFFSSTALKVH-NRVHLG-LKP 27
MC TC K F SS K H + H KP
Sbjct: 59 MCRTCSKKFSSSEECKNHLEQEHAAKFKP 87
>gnl|CDD|132938 cd06607, STKc_TAO, Catalytic domain of the Protein Serine/Threonine
Kinase, Thousand-and-one amino acids proteins.
Serine/threonine kinases (STKs), thousand-and-one amino
acids (TAO) subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The TAO subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. TAO proteins possess mitogen-activated protein
kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK)
activity. They activate the MAPKs, p38 and c-Jun
N-terminal kinase (JNK), by phosphorylating and
activating the respective MAP/ERK kinases (MEKs, also
known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK
signaling cascades are important in mediating cellular
responses to extracellular signals. Vertebrates contain
three TAO subfamily members, named TAO1, TAO2, and TAO3.
Length = 307
Score = 26.3 bits (58), Expect = 8.3
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 90 CHKAFRASSYLQNHRRIH 107
CH A + +YL +H RIH
Sbjct: 121 CHGALQGLAYLHSHERIH 138
>gnl|CDD|184826 PRK14799, thrS, threonyl-tRNA synthetase; Provisional.
Length = 545
Score = 26.3 bits (58), Expect = 8.7
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 57 FQCEYCGKDFARKYSLVVHRRIH 79
F+ EY KD +K ++VHR I+
Sbjct: 392 FKLEYIDKDGIKKRPVMVHRAIY 414
>gnl|CDD|218370 pfam04997, RNA_pol_Rpb1_1, RNA polymerase Rpb1, domain 1. RNA
polymerases catalyze the DNA dependent polymerisation
of RNA. Prokaryotes contain a single RNA polymerase
compared to three in eukaryotes (not including
mitochondrial. and chloroplast polymerases). This
domain, domain 1, represents the clamp domain, which a
mobile domain involved in positioning the DNA,
maintenance of the transcription bubble and positioning
of the nascent RNA strand.
Length = 330
Score = 26.1 bits (58), Expect = 10.0
Identities = 5/16 (31%), Positives = 8/16 (50%)
Query: 77 RIHTGERNYQCEFCHK 92
R+ T ++ CE C
Sbjct: 47 RMGTIKKKSICETCGV 62
>gnl|CDD|177300 PHA00732, PHA00732, hypothetical protein.
Length = 79
Score = 24.7 bits (54), Expect = 10.0
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 11/52 (21%)
Query: 85 YQCEFC-HKAFRASSYLQNHRRIHTGEKPHFCPVCNKMFRVRSDMKRHLNTH 135
++C C + Q+ RR HT K CPVCNK + R LN H
Sbjct: 2 FKCPICGFTTVTLFALKQHARRNHTLTK---CPVCNKSY-------RRLNQH 43
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.136 0.457
Gapped
Lambda K H
0.267 0.0804 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,195,807
Number of extensions: 683063
Number of successful extensions: 1079
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1061
Number of HSP's successfully gapped: 100
Length of query: 171
Length of database: 10,937,602
Length adjustment: 90
Effective length of query: 81
Effective length of database: 6,945,742
Effective search space: 562605102
Effective search space used: 562605102
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (24.8 bits)