RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12258
(171 letters)
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 144 bits (367), Expect = 9e-45
Identities = 58/134 (43%), Positives = 73/134 (54%), Gaps = 1/134 (0%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEY 61
C CGKSF L H R H G KPY C CG+ F Q +L+ H+ H+ K + C
Sbjct: 52 CPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQ-RTHTGEKPYACPE 110
Query: 62 CGKDFARKYSLVVHRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFCPVCNKM 121
CGK F++ L H+R HTGE+ Y+C C K+F L H+R HTGEKP+ CP C K
Sbjct: 111 CGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKS 170
Query: 122 FRVRSDMKRHLNTH 135
F R + H TH
Sbjct: 171 FSRRDALNVHQRTH 184
Score = 142 bits (361), Expect = 7e-44
Identities = 58/134 (43%), Positives = 77/134 (57%), Gaps = 1/134 (0%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEY 61
C CGKSF S L H R H G KPY C CG+ F DL H+ H+ K ++C
Sbjct: 24 CPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQ-RTHTGEKPYKCPE 82
Query: 62 CGKDFARKYSLVVHRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFCPVCNKM 121
CGK F+++ +L H+R HTGE+ Y C C K+F ++L+ H+R HTGEKP+ CP C K
Sbjct: 83 CGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKS 142
Query: 122 FRVRSDMKRHLNTH 135
F ++ H TH
Sbjct: 143 FSREDNLHTHQRTH 156
Score = 135 bits (343), Expect = 4e-41
Identities = 50/128 (39%), Positives = 71/128 (55%), Gaps = 1/128 (0%)
Query: 8 SFFSSTALKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFA 67
S F S++ + G KPY C CG+ F + L H+ H+ K ++C CGK F+
Sbjct: 2 SEFGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQ-RTHTGEKPYKCPECGKSFS 60
Query: 68 RKYSLVVHRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFCPVCNKMFRVRSD 127
K L H+R HTGE+ Y+C C K+F + L+ H+R HTGEKP+ CP C K F +
Sbjct: 61 DKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAH 120
Query: 128 MKRHLNTH 135
++ H TH
Sbjct: 121 LRAHQRTH 128
Score = 126 bits (319), Expect = 2e-37
Identities = 48/111 (43%), Positives = 64/111 (57%), Gaps = 1/111 (0%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEY 61
C CGKSF L+ H R H G KPY C CG+ F Q L+ H+ H+ K ++C
Sbjct: 80 CPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQ-RTHTGEKPYKCPE 138
Query: 62 CGKDFARKYSLVVHRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKP 112
CGK F+R+ +L H+R HTGE+ Y+C C K+F L H+R HTG+K
Sbjct: 139 CGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGKKT 189
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 123 bits (311), Expect = 8e-37
Identities = 45/143 (31%), Positives = 59/143 (41%), Gaps = 12/143 (8%)
Query: 5 CGKSFFSSTALKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLH--------SDVKA 56
G S + + C R F +L H H
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYW 62
Query: 57 FQCEYCGKDFARKYSLVVHRRIHTGERNYQCEF--CHKAFRASSYLQNHRRIHTGEKPHF 114
+C GK F KY LV H R+HTGE+ + C F C K F S L+ H+R HTGEKP
Sbjct: 63 EECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFK 122
Query: 115 CPV--CNKMFRVRSDMKRHLNTH 135
C C++ F SD K+H++ H
Sbjct: 123 CEFEGCDRRFANSSDRKKHMHVH 145
Score = 113 bits (285), Expect = 7e-33
Identities = 38/127 (29%), Positives = 58/127 (45%), Gaps = 14/127 (11%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPY---------GCEVCGRHFRQWGDLKYHKASLHS 52
+C ++F + L H + P C G+ F+ L H +H+
Sbjct: 28 KKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHI-RVHT 86
Query: 53 DVKAFQCEY--CGKDFARKYSLVVHRRIHTGERNYQCEF--CHKAFRASSYLQNHRRIHT 108
K F C + CGK FAR +L +H+R HTGE+ ++CEF C + F SS + H +HT
Sbjct: 87 GEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHT 146
Query: 109 GEKPHFC 115
+K
Sbjct: 147 SDKSGPS 153
Score = 96.2 bits (240), Expect = 4e-26
Identities = 30/115 (26%), Positives = 45/115 (39%), Gaps = 13/115 (11%)
Query: 34 GRHFRQWGDLKYHKAS--LHSDVKAFQCEYCGKDFARKYSLVVHRRIHTGERNYQCEF-- 89
G +K + + + + C + F+ + LV H + Q
Sbjct: 1 GSSGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVC 60
Query: 90 -------CHKAFRASSYLQNHRRIHTGEKPHFCPV--CNKMFRVRSDMKRHLNTH 135
K+F+A L NH R+HTGEKP CP C K+F ++K H TH
Sbjct: 61 YWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTH 115
Score = 49.2 bits (118), Expect = 3e-08
Identities = 5/49 (10%), Positives = 16/49 (32%)
Query: 90 CHKAFRASSYLQNHRRIHTGEKPHFCPVCNKMFRVRSDMKRHLNTHNVD 138
+ + + + I + C++ F ++ H+ +V
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVG 51
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 121 bits (306), Expect = 2e-36
Identities = 41/113 (36%), Positives = 59/113 (52%), Gaps = 3/113 (2%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYH--KASLHSDVKAFQC 59
C TC K F S LKVHNR H G KP+ C CG+ + + +L H + ++ + F C
Sbjct: 10 CPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTC 69
Query: 60 EYCGKDFARKYSLVVHRRIHTGERNYQCEFCHKAFRASSYLQNH-RRIHTGEK 111
C + F R+ L +H HTGE Y+C C + F LQ+H ++H+G
Sbjct: 70 SVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGPS 122
Score = 109 bits (275), Expect = 9e-32
Identities = 35/113 (30%), Positives = 53/113 (46%), Gaps = 4/113 (3%)
Query: 22 HLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYSLVVHRR---I 78
G C C + F LK H H+ K F+C CGK + RK +L+ H +
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHN-RKHTGEKPFECPKCGKCYFRKENLLEHEARNCM 60
Query: 79 HTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFCPVCNKMFRVRSDMKRH 131
+ E+ + C C + FR L+ H HTGE P+ C C++ F + D++ H
Sbjct: 61 NRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSH 113
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 120 bits (304), Expect = 3e-36
Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 1/104 (0%)
Query: 12 STALKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYS 71
S+ K + C+ CGRHF + +L H+ H+D + + C+ C K F R+
Sbjct: 2 SSGSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHE-RTHTDERPYTCDICHKAFRRQDH 60
Query: 72 LVVHRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFC 115
L HR IH+ E+ ++C+ C K F S L H+ +H
Sbjct: 61 LRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLHMQTSSPTA 104
Score = 87.5 bits (218), Expect = 3e-23
Identities = 20/65 (30%), Positives = 32/65 (49%)
Query: 71 SLVVHRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFCPVCNKMFRVRSDMKR 130
R ++ + C+FC + F S L H R HT E+P+ C +C+K FR + ++
Sbjct: 4 GSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRD 63
Query: 131 HLNTH 135
H H
Sbjct: 64 HRYIH 68
Score = 50.5 bits (122), Expect = 4e-09
Identities = 10/40 (25%), Positives = 14/40 (35%)
Query: 96 ASSYLQNHRRIHTGEKPHFCPVCNKMFRVRSDMKRHLNTH 135
SS R +K C C + F ++ H TH
Sbjct: 1 GSSGSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTH 40
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 120 bits (303), Expect = 2e-35
Identities = 47/149 (31%), Positives = 67/149 (44%), Gaps = 16/149 (10%)
Query: 2 CDTCGKSFFSSTALKVH---NRVHLGLKPYGCEVCG-----RHFRQWGDLKYHKASLHSD 53
D C + F S L H +H K + C G R F+ L H H+
Sbjct: 6 WDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHM-RRHTG 64
Query: 54 VKAFQCEY--CGKDFARKYSLVVHRRIHTGERNYQCEF--CHKAFRASSYLQNH-RRIHT 108
K +C + C K ++R +L H R HTGE+ Y CE C KAF +S H R H+
Sbjct: 65 EKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHS 124
Query: 109 GEKPHFCPV--CNKMFRVRSDMKRHLNTH 135
EKP+ C + C K + S +++H+ T
Sbjct: 125 NEKPYVCKLPGCTKRYTDPSSLRKHVKTV 153
Score = 93.8 bits (234), Expect = 3e-25
Identities = 36/115 (31%), Positives = 53/115 (46%), Gaps = 8/115 (6%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGC--EVCGRHFRQWGDLKYHKASLHSDVKAFQC 59
C + F + L VH R H G KP+ C E C + + + +LK H S H+ K + C
Sbjct: 42 CSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRS-HTGEKPYMC 100
Query: 60 EY--CGKDFARKYSLVVH-RRIHTGERNYQCEF--CHKAFRASSYLQNHRRIHTG 109
E+ C K F+ H R H+ E+ Y C+ C K + S L+ H + G
Sbjct: 101 EHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG 155
Score = 90.3 bits (225), Expect = 7e-24
Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 10/91 (10%)
Query: 55 KAFQCEYCGKDFARKYSLVVH---RRIHTGERNYQCEFC-----HKAFRASSYLQNHRRI 106
+ + C ++F + LV H IH + + C + + F+A L H R
Sbjct: 2 TDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRR 61
Query: 107 HTGEKPHFCPV--CNKMFRVRSDMKRHLNTH 135
HTGEKPH C C K + ++K HL +H
Sbjct: 62 HTGEKPHKCTFEGCRKSYSRLENLKTHLRSH 92
Score = 55.7 bits (135), Expect = 1e-10
Identities = 12/62 (19%), Positives = 23/62 (37%), Gaps = 8/62 (12%)
Query: 82 ERNYQCEFCHKAFRASSYLQNH---RRIHTGEKPHFCPVCN-----KMFRVRSDMKRHLN 133
E + + + C + F + L +H IH K C + F+ + + H+
Sbjct: 1 ETDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMR 60
Query: 134 TH 135
H
Sbjct: 61 RH 62
Score = 29.9 bits (68), Expect = 0.26
Identities = 5/28 (17%), Positives = 13/28 (46%)
Query: 110 EKPHFCPVCNKMFRVRSDMKRHLNTHNV 137
E C++ F + + H+N+ ++
Sbjct: 1 ETDCRWDGCSQEFDSQEQLVHHINSEHI 28
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 115 bits (291), Expect = 4e-34
Identities = 42/113 (37%), Positives = 63/113 (55%), Gaps = 6/113 (5%)
Query: 5 CGKSFFSSTALKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEY--C 62
C K F ++A++ H H G + + C CG+ F + LK H+ +H+ K FQC + C
Sbjct: 13 CTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQ-LVHTGEKPFQCTFEGC 70
Query: 63 GKDFARKYSLVVHRRIHTGERNYQCEF--CHKAFRASSYLQNHRRIHTGEKPH 113
GK F+ ++L H RIHTG+R Y C F C+K F S+ L++H H K +
Sbjct: 71 GKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNN 123
Score = 109 bits (274), Expect = 2e-31
Identities = 41/116 (35%), Positives = 59/116 (50%), Gaps = 8/116 (6%)
Query: 26 KPYGC--EVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYSLVVHRRIHTGER 83
+ C + C + FR ++ H H + C CGK F L H+ +HTGE+
Sbjct: 4 RTIACPHKGCTKMFRDNSAMRKHL-HTHGP-RVHVCAECGKAFVESSKLKRHQLVHTGEK 61
Query: 84 NYQCEF--CHKAFRASSYLQNHRRIHTGEKPHFCPV--CNKMFRVRSDMKRHLNTH 135
+QC F C K F L+ H RIHTG++P+ CP CNK F +++K H+ TH
Sbjct: 62 PFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 117
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 116 bits (293), Expect = 1e-33
Identities = 39/143 (27%), Positives = 62/143 (43%), Gaps = 10/143 (6%)
Query: 3 DTCGKSFFSSTALKVHNRVHLGLKPYGCE--VCGRHFRQWGDLKYHKASLHSDVKA--FQ 58
+ C K F S L H+ H G K + C+ C F ++K H + ++K +
Sbjct: 48 EGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHF-NRFHNIKICVYV 106
Query: 59 CEY--CGKDFARKYSLVVHRRIHTGERNYQC--EFCHKAFRASSYLQNHRRIHTGEKPHF 114
C + CGK F + L VH+ HT + Y+C E C K F S L+ H ++H G
Sbjct: 107 CHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKK 166
Query: 115 CPVCNKMFRVRSD-MKRHLNTHN 136
C+ + + + +K H
Sbjct: 167 DDSCSFVGKTWTLYLKHVAECHQ 189
Score = 108 bits (273), Expect = 1e-30
Identities = 33/128 (25%), Positives = 52/128 (40%), Gaps = 11/128 (8%)
Query: 18 HNRVHLGLKPYGCEV--CGRHFRQWGDLKYHKASLHSDVKAFQCEY--CGKDFARKYSLV 73
+ + K Y C CG + + L+ H H+ K F C+ C K F + L
Sbjct: 3 EKALPVVYKRYICSFADCGAAYNKNWKLQAHL-CKHTGEKPFPCKEEGCEKGFTSLHHLT 61
Query: 74 VHRRIHTGERNYQCE--FCHKAFRASSYLQNHRRIHTGEK--PHFCPV--CNKMFRVRSD 127
H HTGE+N+ C+ C F + ++ H K + C C K F+ +
Sbjct: 62 RHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQ 121
Query: 128 MKRHLNTH 135
+K H +H
Sbjct: 122 LKVHQFSH 129
Score = 46.8 bits (112), Expect = 4e-07
Identities = 15/51 (29%), Positives = 20/51 (39%)
Query: 3 DTCGKSFFSSTALKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSD 53
+ C K F + LK H +VH G + C + W H A H D
Sbjct: 140 EGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECHQD 190
Score = 41.0 bits (97), Expect = 5e-05
Identities = 6/36 (16%), Positives = 12/36 (33%), Gaps = 2/36 (5%)
Query: 102 NHRRIHTGEKPHFC--PVCNKMFRVRSDMKRHLNTH 135
+ + K + C C + ++ HL H
Sbjct: 2 GEKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKH 37
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 114 bits (287), Expect = 1e-33
Identities = 41/116 (35%), Positives = 62/116 (53%), Gaps = 7/116 (6%)
Query: 26 KPYGCE--VCGRHFRQWGDLKYHKASLHSDVKAFQCEY--CGKDFARKYSLVVHRRIHTG 81
+P+ C C + + + L+ H H+ K +QC++ C + F+R L H+R HTG
Sbjct: 5 RPFMCAYPGCNKRYFKLSHLQMHS-RKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTG 63
Query: 82 ERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFC--PVCNKMFRVRSDMKRHLNTH 135
+ +QC+ C + F S +L+ H R HTGEKP C P C K F ++ RH N H
Sbjct: 64 VKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 82.2 bits (204), Expect = 5e-21
Identities = 31/105 (29%), Positives = 40/105 (38%), Gaps = 31/105 (29%)
Query: 5 CGKSFFSSTALKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGK 64
C + F S LK H R H G+KP+ C+ C R F + LK
Sbjct: 44 CERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLK-------------------- 83
Query: 65 DFARKYSLVVHRRIHTGERNYQCEF--CHKAFRASSYLQNHRRIH 107
H R HTGE+ + C + C K F S L H +H
Sbjct: 84 ---------THTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 64.8 bits (159), Expect = 2e-14
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 80 TGERNYQCE--FCHKAFRASSYLQNHRRIHTGEKPHFCPV--CNKMFRVRSDMKRHLNTH 135
+ +R + C C+K + S+LQ H R HTGEKP+ C C + F +KRH H
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRH 61
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 113 bits (285), Expect = 3e-33
Identities = 32/107 (29%), Positives = 46/107 (42%), Gaps = 4/107 (3%)
Query: 20 RVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYSLVVHRRIH 79
G K Y C+ CG+ F H S+H ++ + C CGK F K+ LV H +IH
Sbjct: 3 SGSSGDKLYPCQ-CGKSFTHKSQRDRHM-SMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 60
Query: 80 TGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFCPVCNKMFRVRS 126
TG + Y+C C K F HR + + K + + S
Sbjct: 61 TGIKPYECNICAKRFMWRDSF--HRHVTSCTKSYEAAKAEQNTTEAS 105
Score = 97.9 bits (245), Expect = 2e-27
Identities = 32/84 (38%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 51 HSDVKAFQCEYCGKDFARKYSLVVHRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGE 110
S K + C+ CGK F K H +H G R Y C C K F+ +L H +IHTG
Sbjct: 5 SSGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGI 63
Query: 111 KPHFCPVCNKMFRVRSDMKRHLNT 134
KP+ C +C K F R RH+ +
Sbjct: 64 KPYECNICAKRFMWRDSFHRHVTS 87
Score = 75.9 bits (188), Expect = 9e-19
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 77 RIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFCPVCNKMFRVRSDMKRHLNTH 135
+G++ Y C+ C K+F S H +H G +P+ C VC K F+++ + H+ H
Sbjct: 3 SGSSGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 60
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 111 bits (281), Expect = 6e-33
Identities = 36/94 (38%), Positives = 48/94 (51%), Gaps = 1/94 (1%)
Query: 22 HLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYSLVVHRRIHTG 81
P+ CEVCG+ F + LK H H+ VK ++C+ C A SL H RIH+
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTHM-RCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSD 61
Query: 82 ERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFC 115
ER ++C+ C A R SS L H R HTG+
Sbjct: 62 ERPFKCQICPYASRNSSQLTVHLRSHTGDSGPSS 95
Score = 104 bits (262), Expect = 5e-30
Identities = 34/85 (40%), Positives = 44/85 (51%)
Query: 51 HSDVKAFQCEYCGKDFARKYSLVVHRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGE 110
+CE CGK F+RK L H R HTG + Y+C+ C A SS L H RIH+ E
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDE 62
Query: 111 KPHFCPVCNKMFRVRSDMKRHLNTH 135
+P C +C R S + HL +H
Sbjct: 63 RPFKCQICPYASRNSSQLTVHLRSH 87
Score = 64.4 bits (158), Expect = 2e-14
Identities = 18/86 (20%), Positives = 27/86 (31%), Gaps = 29/86 (33%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEY 61
C TC + S++L H R+H +P+ C++
Sbjct: 39 CKTCDYAAADSSSLNKHLRIHSDERPFKCQI----------------------------- 69
Query: 62 CGKDFARKYSLVVHRRIHTGERNYQC 87
C L VH R HTG+
Sbjct: 70 CPYASRNSSQLTVHLRSHTGDSGPSS 95
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 102 bits (257), Expect = 2e-29
Identities = 35/80 (43%), Positives = 45/80 (56%)
Query: 56 AFQCEYCGKDFARKYSLVVHRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFC 115
+F C+ CGK F R +L H IH+ R Y C++C K F S ++ H IHTGEKPH C
Sbjct: 1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKC 60
Query: 116 PVCNKMFRVRSDMKRHLNTH 135
VC K F S++ H H
Sbjct: 61 QVCGKAFSQSSNLITHSRKH 80
Score = 93.3 bits (233), Expect = 7e-26
Identities = 38/108 (35%), Positives = 48/108 (44%), Gaps = 29/108 (26%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEY 61
C CGKSF S+ L H +H +PY C+Y
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPY-----------------------------PCQY 34
Query: 62 CGKDFARKYSLVVHRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTG 109
CGK F +K + H IHTGE+ ++C+ C KAF SS L H R HTG
Sbjct: 35 CGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKHTG 82
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A {Mus
musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A
1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A*
1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 101 bits (253), Expect = 9e-29
Identities = 34/88 (38%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 26 KPYGCEV--CGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYSLVVHRRIHTGER 83
+PY C V C R F Q G L H +H+ K FQC C ++F+R L H R HTGE+
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHI-RIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 84 NYQCEFCHKAFRASSYLQNHRRIHTGEK 111
+ C+ C + F S + H +IH +K
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 99.8 bits (250), Expect = 3e-28
Identities = 33/83 (39%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Query: 55 KAFQC--EYCGKDFARKYSLVVHRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKP 112
+ + C E C + F++ SL H RIHTG++ +QC C + F S +L H R HTGEKP
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 113 HFCPVCNKMFRVRSDMKRHLNTH 135
C +C + F + KRH H
Sbjct: 63 FACDICGRKFARSDERKRHTKIH 85
Score = 58.6 bits (143), Expect = 2e-12
Identities = 20/83 (24%), Positives = 31/83 (37%), Gaps = 29/83 (34%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEY 61
C C ++F S L H R H G KP+ C++CGR F + + K
Sbjct: 37 CRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERK----------------- 79
Query: 62 CGKDFARKYSLVVHRRIHTGERN 84
H +IH +++
Sbjct: 80 ------------RHTKIHLRQKD 90
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 98.7 bits (247), Expect = 9e-28
Identities = 33/93 (35%), Positives = 43/93 (46%), Gaps = 4/93 (4%)
Query: 22 HLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYSLVVHRRIHTG 81
G CE+CG+ FR L HK S HS K + C CG F RK + H R H G
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLS-HSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 60
Query: 82 ERN--YQCEFCHKAFRASSYLQNH-RRIHTGEK 111
Y C+ C K F +L H +++H+G
Sbjct: 61 SVGKPYICQSCGKGFSRPDHLNGHIKQVHSGPS 93
Score = 96.4 bits (241), Expect = 6e-27
Identities = 31/87 (35%), Positives = 37/87 (42%), Gaps = 6/87 (6%)
Query: 51 HSDVKAFQCEYCGKDFARKYSLVVHRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGE 110
S CE CGK F Y L H+ H+GE+ Y C C F+ + H R H G
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS 61
Query: 111 --KPHFCPVCNKMFRVRSDMKRHLNTH 135
KP+ C C K F HLN H
Sbjct: 62 VGKPYICQSCGKGFSRPD----HLNGH 84
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 94.9 bits (237), Expect = 2e-26
Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 5/87 (5%)
Query: 54 VKAFQCEYCGKDFARKYSLVVHRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPH 113
+K FQC C ++F+R L H R HTGE+ + C+ C + F S + HR I P
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH-ILPI 59
Query: 114 FCPVCNKMFRVRSDMKRHLNTHNVDAR 140
++ HL +
Sbjct: 60 LEDKVEELLSKNY----HLENEVARLK 82
Score = 92.9 bits (232), Expect = 1e-25
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 5/90 (5%)
Query: 25 LKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYSLVVHRRIHTGERN 84
+KP+ C +C R+F + L H H+ K F C+ CG+ FAR HR I
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHI-RTHTGEKPFACDICGRKFARSDERKRHRDIQH-ILP 58
Query: 85 YQCEFCHKAFRASSYLQNHR---RIHTGEK 111
+ + + +L+N + GE+
Sbjct: 59 ILEDKVEELLSKNYHLENEVARLKKLVGER 88
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 91.8 bits (229), Expect = 4e-25
Identities = 27/87 (31%), Positives = 37/87 (42%), Gaps = 2/87 (2%)
Query: 51 HSDVKAFQCEYCGKDFARKYSLVVHRRIHTGERNYQC--EFCHKAFRASSYLQNHRRIHT 108
+ CGK + + L H R HTGE+ Y C + C F S L H R HT
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHT 61
Query: 109 GEKPHFCPVCNKMFRVRSDMKRHLNTH 135
G +P C C++ F + H+ H
Sbjct: 62 GHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 81.0 bits (201), Expect = 5e-21
Identities = 35/106 (33%), Positives = 44/106 (41%), Gaps = 27/106 (25%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEY 61
CGK++ S+ LK H R H G KPY C +
Sbjct: 10 YAGCGKTYTKSSHLKAHLRTHTGEKPYHC---------------------------DWDG 42
Query: 62 CGKDFARKYSLVVHRRIHTGERNYQCEFCHKAFRASSYLQNHRRIH 107
CG FAR L H R HTG R +QC+ C +AF S +L H + H
Sbjct: 43 CGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 27.5 bits (62), Expect = 0.90
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 2 CDTCGKSFFSSTALKVHNRVHL 23
C C ++F S L +H + H
Sbjct: 68 CQKCDRAFSRSDHLALHMKRHF 89
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 72
Score = 87.9 bits (219), Expect = 7e-24
Identities = 31/63 (49%), Positives = 39/63 (61%)
Query: 51 HSDVKAFQCEYCGKDFARKYSLVVHRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGE 110
HS K + C CGK F+R LV H+R+HTGE+ Y+C C KAF +S L NH+RIHT
Sbjct: 9 HSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSG 68
Query: 111 KPH 113
Sbjct: 69 PSS 71
Score = 84.1 bits (209), Expect = 3e-22
Identities = 28/64 (43%), Positives = 34/64 (53%)
Query: 72 LVVHRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFCPVCNKMFRVRSDMKRH 131
IH+GE+ Y C C KAF SS L H+R+HTGEKP+ C C K F S + H
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61
Query: 132 LNTH 135
H
Sbjct: 62 QRIH 65
Score = 59.4 bits (145), Expect = 7e-13
Identities = 26/84 (30%), Positives = 34/84 (40%), Gaps = 29/84 (34%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEY 61
C CGK+F S+ L H RVH G KPY +C
Sbjct: 17 CVECGKAFSRSSILVQHQRVHTGEKPY-----------------------------KCLE 47
Query: 62 CGKDFARKYSLVVHRRIHTGERNY 85
CGK F++ L+ H+RIHT +
Sbjct: 48 CGKAFSQNSGLINHQRIHTSGPSS 71
Score = 37.8 bits (89), Expect = 1e-04
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYG 29
C CGK+F ++ L H R+H G
Sbjct: 45 CLECGKAFSQNSGLINHQRIHTSGPSSG 72
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 87.9 bits (219), Expect = 9e-24
Identities = 30/103 (29%), Positives = 40/103 (38%), Gaps = 29/103 (28%)
Query: 11 SSTALKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKY 70
SS + + Y +C+ CGK F+
Sbjct: 2 SSGSSGRSEWQQRERRRY-----------------------------KCDECGKSFSHSS 32
Query: 71 SLVVHRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPH 113
L HRR HTGE+ Y+C+ C KAF S+L H R+HTG P
Sbjct: 33 DLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPS 75
Score = 83.6 bits (208), Expect = 3e-22
Identities = 27/69 (39%), Positives = 32/69 (46%)
Query: 67 ARKYSLVVHRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFCPVCNKMFRVRS 126
S R Y+C+ C K+F SS L HRR HTGEKP+ C C K F RS
Sbjct: 1 GSSGSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRS 60
Query: 127 DMKRHLNTH 135
+ H H
Sbjct: 61 HLIGHHRVH 69
Score = 58.2 bits (142), Expect = 3e-12
Identities = 27/84 (32%), Positives = 33/84 (39%), Gaps = 29/84 (34%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEY 61
CD CGKSF S+ L H R H G KPY C+
Sbjct: 21 CDECGKSFSHSSDLSKHRRTHTGEKPYKCDE----------------------------- 51
Query: 62 CGKDFARKYSLVVHRRIHTGERNY 85
CGK F ++ L+ H R+HTG
Sbjct: 52 CGKAFIQRSHLIGHHRVHTGSGPS 75
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 79
Score = 87.6 bits (218), Expect = 1e-23
Identities = 16/77 (20%), Positives = 35/77 (45%), Gaps = 5/77 (6%)
Query: 51 HSDVKAFQCEY--CGKDFARKYSLVVHRRI-HTGERNYQCEF--CHKAFRASSYLQNHRR 105
S C++ CG+ F+ + L H++ H ++++ C C K+F +L+ H +
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK 61
Query: 106 IHTGEKPHFCPVCNKMF 122
+H+ + + C
Sbjct: 62 LHSDTRDYICEFSGPSS 78
Score = 64.9 bits (159), Expect = 7e-15
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
Query: 79 HTGERNYQCEF--CHKAFRASSYLQNHRRI-HTGEKPHFCP--VCNKMFRVRSDMKRHLN 133
+G C+F C + F YL +H++ H +K CP C K F + +K H+
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK 61
Query: 134 TH 135
H
Sbjct: 62 LH 63
Score = 47.2 bits (113), Expect = 4e-08
Identities = 13/35 (37%), Positives = 16/35 (45%)
Query: 3 DTCGKSFFSSTALKVHNRVHLGLKPYGCEVCGRHF 37
CGKSF LK H ++H + Y CE G
Sbjct: 44 PACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPSS 78
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 87.7 bits (218), Expect = 2e-23
Identities = 31/94 (32%), Positives = 40/94 (42%), Gaps = 4/94 (4%)
Query: 46 HKASLHSDVKAFQCE--YCGKDFARKYSLVVHRRIHTGERNYQC--EFCHKAFRASSYLQ 101
+ C+ C K + + L H R HTGE+ Y+C E C F S L
Sbjct: 5 SSGPDLEKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELT 64
Query: 102 NHRRIHTGEKPHFCPVCNKMFRVRSDMKRHLNTH 135
H R HTG KP C VCN+ F + H+ H
Sbjct: 65 RHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRH 98
Score = 81.9 bits (203), Expect = 3e-21
Identities = 32/103 (31%), Positives = 46/103 (44%), Gaps = 7/103 (6%)
Query: 8 SFFSSTALKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQC--EYCGKD 65
S SS R+H P C + + + LK H H+ K ++C E C
Sbjct: 2 SSGSSGPDLEKRRIHYCDYPG----CTKVYTKSSHLKAHL-RTHTGEKPYKCTWEGCDWR 56
Query: 66 FARKYSLVVHRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHT 108
FAR L H R HTG + +QC C+++F S +L H + H
Sbjct: 57 FARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRHQ 99
Score = 48.0 bits (115), Expect = 4e-08
Identities = 17/43 (39%), Positives = 19/43 (44%)
Query: 5 CGKSFFSSTALKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHK 47
C F S L H R H G KP+ C VC R F + L H
Sbjct: 53 CDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHM 95
Score = 37.6 bits (88), Expect = 3e-04
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
Query: 93 AFRASSYLQNHRRIHTGEKPHFCPVCNKMFRVRSDMKRHLNTH 135
+ +S RRIH + P C K++ S +K HL TH
Sbjct: 2 SSGSSGPDLEKRRIHYCDYPG----CTKVYTKSSHLKAHLRTH 40
Score = 26.0 bits (58), Expect = 3.4
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 2 CDTCGKSFFSSTALKVHNRVH 22
C C +SF S L +H + H
Sbjct: 78 CGVCNRSFSRSDHLALHMKRH 98
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 86.0 bits (214), Expect = 4e-23
Identities = 27/102 (26%), Positives = 40/102 (39%), Gaps = 29/102 (28%)
Query: 12 STALKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYS 71
H+ + KPY +C+ C F K +
Sbjct: 2 GHHHHHHSHMTHSDKPY-----------------------------KCDRCQASFRYKGN 32
Query: 72 LVVHRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPH 113
L H+ +HTGE+ Y+C C F + L+ H RIH+GEKP+
Sbjct: 33 LASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKPY 74
Score = 84.4 bits (210), Expect = 2e-22
Identities = 20/65 (30%), Positives = 34/65 (52%)
Query: 71 SLVVHRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFCPVCNKMFRVRSDMKR 130
H + ++ Y+C+ C +FR L +H+ +HTGEKP+ C +C F +++K
Sbjct: 4 HHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKT 63
Query: 131 HLNTH 135
H H
Sbjct: 64 HTRIH 68
Score = 59.8 bits (146), Expect = 6e-13
Identities = 26/84 (30%), Positives = 30/84 (35%), Gaps = 29/84 (34%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEY 61
CD C SF L H VH G KPY C +
Sbjct: 20 CDRCQASFRYKGNLASHKTVHTGEKPYRCNI----------------------------- 50
Query: 62 CGKDFARKYSLVVHRRIHTGERNY 85
CG F R +L H RIH+GE+ Y
Sbjct: 51 CGAQFNRPANLKTHTRIHSGEKPY 74
Score = 51.3 bits (124), Expect = 1e-09
Identities = 9/39 (23%), Positives = 17/39 (43%)
Query: 97 SSYLQNHRRIHTGEKPHFCPVCNKMFRVRSDMKRHLNTH 135
+ +H + +KP+ C C FR + ++ H H
Sbjct: 2 GHHHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVH 40
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 86
Score = 85.3 bits (212), Expect = 1e-22
Identities = 19/112 (16%), Positives = 27/112 (24%), Gaps = 33/112 (29%)
Query: 15 LKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYSLVV 74
R H G KPY C +C K F +K L +
Sbjct: 3 SGSSGRTHTGEKPY-----------------------------ACSHCDKTFRQKQLLDM 33
Query: 75 HRRIHTGERN----YQCEFCHKAFRASSYLQNHRRIHTGEKPHFCPVCNKMF 122
H + + + C C K F + + H G
Sbjct: 34 HFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVEGENSGPSS 85
Score = 78.3 bits (194), Expect = 6e-20
Identities = 22/69 (31%), Positives = 27/69 (39%), Gaps = 4/69 (5%)
Query: 71 SLVVHRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGE----KPHFCPVCNKMFRVRS 126
S R HTGE+ Y C C K FR L H + + C C K F R+
Sbjct: 2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRN 61
Query: 127 DMKRHLNTH 135
M RH +
Sbjct: 62 TMARHADNC 70
Score = 44.4 bits (106), Expect = 6e-07
Identities = 9/36 (25%), Positives = 11/36 (30%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGCEVCGRHF 37
C CGK+F + H G E G
Sbjct: 50 CSKCGKTFTRRNTMARHADNCAGPDGVEGENSGPSS 85
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 77
Score = 82.2 bits (204), Expect = 2e-21
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Query: 71 SLVVHRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGE--KPHFCPVCNKMFRVRSDM 128
S R H+GE+ Y+C CH F S ++ H E CP C+ + +SD+
Sbjct: 2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDL 61
Query: 129 KRHLNTH 135
HL
Sbjct: 62 GVHLRKQ 68
Score = 79.1 bits (196), Expect = 2e-20
Identities = 22/102 (21%), Positives = 28/102 (27%), Gaps = 32/102 (31%)
Query: 15 LKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYSLVV 74
R H G KPY C +C F Q G +K +
Sbjct: 3 SGSSGRTHSGEKPYECYICHARFTQSGTMK-----------------------------M 33
Query: 75 HRRIHTGERN--YQCEFCHKAFRASSYLQNH-RRIHTGEKPH 113
H E + C C S L H R+ H+ P
Sbjct: 34 HILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYSGPS 75
Score = 54.8 bits (133), Expect = 5e-11
Identities = 13/53 (24%), Positives = 18/53 (33%), Gaps = 2/53 (3%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLG--LKPYGCEVCGRHFRQWGDLKYHKASLHS 52
C C F S +K+H + + C C + DL H HS
Sbjct: 18 CYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHS 70
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 81.9 bits (203), Expect = 3e-21
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Query: 59 CEYCGKDFARKYSLVVHRRIHTGERNYQC--EFCHKAFRASSYLQNHRRIHTGEKPHFCP 116
E CGK F + L VH+ HT + Y+C E C K F S L+ H ++H G
Sbjct: 6 FENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDD 65
Query: 117 VCNKMFRVRSDMKRH 131
C+ + + + +H
Sbjct: 66 SCSFVGKTWTLYLKH 80
Score = 73.8 bits (182), Expect = 3e-18
Identities = 23/107 (21%), Positives = 32/107 (29%), Gaps = 28/107 (26%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEY 61
+ CGK+F LKVH H PY C G
Sbjct: 6 FENCGKAFKKHNQLKVHQFSHTQQLPYECPHEG--------------------------- 38
Query: 62 CGKDFARKYSLVVHRRIHTGERNYQCEFCHKAFRASSYLQNH-RRIH 107
C K F+ L H ++H G + + C + + H H
Sbjct: 39 CDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECH 85
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 79.9 bits (198), Expect = 8e-21
Identities = 16/66 (24%), Positives = 27/66 (40%)
Query: 51 HSDVKAFQCEYCGKDFARKYSLVVHRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGE 110
S +C C + K +L +H RIH +R ++C +C + S L H + G+
Sbjct: 4 GSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGD 63
Query: 111 KPHFCP 116
Sbjct: 64 MSGPSS 69
Score = 71.8 bits (177), Expect = 1e-17
Identities = 12/59 (20%), Positives = 26/59 (44%)
Query: 77 RIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFCPVCNKMFRVRSDMKRHLNTH 135
+ +C C + + + L+ H RIH ++P C C+ + S++ +H+
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKF 60
Score = 61.0 bits (149), Expect = 2e-13
Identities = 17/87 (19%), Positives = 27/87 (31%), Gaps = 29/87 (33%)
Query: 1 MCDTCGKSFFSSTALKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCE 60
C C S S AL++H R+H +P+ C
Sbjct: 11 KCSECSYSCSSKAALRIHERIHCTDRPFK-----------------------------CN 41
Query: 61 YCGKDFARKYSLVVHRRIHTGERNYQC 87
YC D + +L H + G+ +
Sbjct: 42 YCSFDTKQPSNLSKHMKKFHGDMSGPS 68
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 76.8 bits (190), Expect = 1e-19
Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 55 KAFQCEYCGKDFARKYSLVVHRRIHTGERNYQCEFCHKAFRASSYLQNH-RRIHTGEK 111
++F CE C + FAR+ L H R HT E+ Y C C++AF L H ++IH+G
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNL 58
Score = 64.0 bits (157), Expect = 1e-14
Identities = 20/47 (42%), Positives = 28/47 (59%)
Query: 85 YQCEFCHKAFRASSYLQNHRRIHTGEKPHFCPVCNKMFRVRSDMKRH 131
+ CE C +AF +L+ H R HT EKP+ C +CN+ F R + RH
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRH 49
Score = 51.3 bits (124), Expect = 7e-10
Identities = 20/82 (24%), Positives = 30/82 (36%), Gaps = 30/82 (36%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEY 61
C+ C ++F LK H R H KPY C +
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGL----------------------------- 35
Query: 62 CGKDFARKYSLVVH-RRIHTGE 82
C + F R+ L+ H ++IH+G
Sbjct: 36 CNRAFTRRDLLIRHAQKIHSGN 57
Score = 26.7 bits (60), Expect = 0.89
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 111 KPHFCPVCNKMFRVRSDMKRHLNTH 135
+ C VC + F + +KRH +H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSH 25
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double
helix, transcription/DNA complex; HET: DNA; 2.80A
{Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 76.4 bits (189), Expect = 2e-19
Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 2/62 (3%)
Query: 77 RIHTGERNYQCEFCHKAFRASSYLQNHRRI--HTGEKPHFCPVCNKMFRVRSDMKRHLNT 134
GE Y+C+ C + + S H K + CP C K F + +M H+
Sbjct: 3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKI 62
Query: 135 HN 136
+
Sbjct: 63 IH 64
Score = 66.0 bits (162), Expect = 2e-15
Identities = 11/61 (18%), Positives = 20/61 (32%), Gaps = 2/61 (3%)
Query: 51 HSDVKAFQCEYCGKDFARKYSLVVHRRI--HTGERNYQCEFCHKAFRASSYLQNHRRIHT 108
++C+ C + + + H + Y C FC K F + H +I
Sbjct: 5 KEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIH 64
Query: 109 G 109
Sbjct: 65 K 65
Score = 65.7 bits (161), Expect = 2e-15
Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Query: 19 NRVHLGLKPYGCEVCGRHFRQWGDLKYHK-ASLHSDVKAFQCEYCGKDFARKYSLVVHRR 77
G Y C+VC R + + H S +VK + C +C K+F RK ++ H +
Sbjct: 2 EFTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVK 61
Query: 78 IHTG 81
I
Sbjct: 62 IIHK 65
Score = 47.9 bits (115), Expect = 2e-08
Identities = 9/48 (18%), Positives = 17/48 (35%), Gaps = 2/48 (4%)
Query: 2 CDTCGKSFFSSTALKVHNRV--HLGLKPYGCEVCGRHFRQWGDLKYHK 47
C C + + + H +K Y C C + F + ++ H
Sbjct: 13 CKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHV 60
Score = 27.1 bits (61), Expect = 0.72
Identities = 5/24 (20%), Positives = 9/24 (37%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGL 25
C C K F + H ++ +
Sbjct: 43 CPFCFKEFTRKDNMTAHVKIIHKI 66
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 75.5 bits (186), Expect = 5e-19
Identities = 20/73 (27%), Positives = 25/73 (34%), Gaps = 3/73 (4%)
Query: 51 HSDVKAFQCEYCGKDFARKYSLVVHRRIHT---GERNYQCEFCHKAFRASSYLQNHRRIH 107
S QCE CG +K SL H+R H + CEFC K F + HR
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Query: 108 TGEKPHFCPVCNK 120
+
Sbjct: 62 HPALLLAPQESSG 74
Score = 72.4 bits (178), Expect = 1e-17
Identities = 15/60 (25%), Positives = 20/60 (33%), Gaps = 3/60 (5%)
Query: 79 HTGERNYQCEFCHKAFRASSYLQNHRRIHT---GEKPHFCPVCNKMFRVRSDMKRHLNTH 135
+G QCE C R + L H+R H C C K F + H +
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Score = 66.3 bits (162), Expect = 2e-15
Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 4/70 (5%)
Query: 22 HLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDV---KAFQCEYCGKDFARKYSLVVHRRI 78
G CE+CG RQ L +H+ H++ F CE+CGK F + S+ HR
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQ-RKHAETVAALRFPCEFCGKRFEKPDSVAAHRSK 60
Query: 79 HTGERNYQCE 88
+
Sbjct: 61 SHPALLLAPQ 70
Score = 65.9 bits (161), Expect = 4e-15
Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 3/69 (4%)
Query: 2 CDTCGKSFFSSTALKVHNRVH---LGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQ 58
C+ CG + +L H R H + + CE CG+ F + + H++ H +
Sbjct: 10 CEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLLAP 69
Query: 59 CEYCGKDFA 67
E G
Sbjct: 70 QESSGPSSG 78
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 69.5 bits (171), Expect = 6e-17
Identities = 19/42 (45%), Positives = 25/42 (59%)
Query: 74 VHRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFC 115
GE+ Y+C+ C K F SS+LQ H+R+HTGEKP
Sbjct: 2 SSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
Score = 47.9 bits (115), Expect = 1e-08
Identities = 15/71 (21%), Positives = 24/71 (33%), Gaps = 29/71 (40%)
Query: 17 VHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYSLVVHR 76
+G K Y +C+ CGK+F++ L H+
Sbjct: 2 SSGSSGMGEKCY-----------------------------KCDVCGKEFSQSSHLQTHQ 32
Query: 77 RIHTGERNYQC 87
R+HTGE+
Sbjct: 33 RVHTGEKPSGP 43
Score = 41.4 bits (98), Expect = 3e-06
Identities = 16/29 (55%), Positives = 18/29 (62%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGC 30
CD CGK F S+ L+ H RVH G KP G
Sbjct: 15 CDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
Score = 41.4 bits (98), Expect = 3e-06
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 103 HRRIHTGEKPHFCPVCNKMFRVRSDMKRHLNTH 135
GEK + C VC K F S ++ H H
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVH 35
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 68.3 bits (168), Expect = 1e-16
Identities = 18/41 (43%), Positives = 25/41 (60%)
Query: 75 HRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFC 115
TGE+ Y+C+ C KAFR SS+L H +H+GE+P
Sbjct: 3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 46.7 bits (112), Expect = 3e-08
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 51 HSDVKAFQCEYCGKDFARKYSLVVHRRIHTGERNYQC 87
+ K ++C+ CGK F LV H +H+GER
Sbjct: 7 GTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 43.7 bits (104), Expect = 4e-07
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 103 HRRIHTGEKPHFCPVCNKMFRVRSDMKRHLNTH 135
TGEKP+ C VC K FRV S + +H + H
Sbjct: 3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVH 35
Score = 39.0 bits (92), Expect = 2e-05
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGC 30
C CGK+F S+ L H+ VH G +P G
Sbjct: 15 CQVCGKAFRVSSHLVQHHSVHSGERPSGP 43
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 68.3 bits (168), Expect = 2e-16
Identities = 21/41 (51%), Positives = 26/41 (63%)
Query: 75 HRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFC 115
TGE+ Y+C+ CHK+FR S L H+RIHTGEKP
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
Score = 47.5 bits (114), Expect = 2e-08
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 51 HSDVKAFQCEYCGKDFARKYSLVVHRRIHTGERNYQC 87
+ K ++C+ C K F SL VH+RIHTGE+
Sbjct: 7 GTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
Score = 44.0 bits (105), Expect = 3e-07
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 103 HRRIHTGEKPHFCPVCNKMFRVRSDMKRHLNTH 135
TGEKP+ C VC+K FR S + H H
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIH 35
Score = 41.7 bits (99), Expect = 2e-06
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGC 30
CD C KSF ++L VH R+H G KP G
Sbjct: 15 CDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 68.3 bits (168), Expect = 2e-16
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 74 VHRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFC 115
TGE+ ++C+ C K+F S L H +HT EKP
Sbjct: 2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGP 43
Score = 47.1 bits (113), Expect = 2e-08
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 51 HSDVKAFQCEYCGKDFARKYSLVVHRRIHTGERNYQCE 88
+ K F+C+ CGK F + L H +HT E+
Sbjct: 7 GTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPS 44
Score = 45.9 bits (110), Expect = 6e-08
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 102 NHRRIHTGEKPHFCPVCNKMFRVRSDMKRHLNTH 135
+ TGEKP C +C K F RS + RH H
Sbjct: 2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVH 35
Score = 42.5 bits (101), Expect = 1e-06
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGCE 31
CD CGKSF + L H+ VH KP G
Sbjct: 15 CDICGKSFCGRSRLNRHSMVHTAEKPSGPS 44
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 68.3 bits (168), Expect = 2e-16
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 75 HRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFC 115
+GE+ Y+C C KAF ++L HRRIHTG +P
Sbjct: 3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGP 43
Score = 47.9 bits (115), Expect = 1e-08
Identities = 17/38 (44%), Positives = 19/38 (50%)
Query: 51 HSDVKAFQCEYCGKDFARKYSLVVHRRIHTGERNYQCE 88
S K ++C CGK F R L HRRIHTG R
Sbjct: 7 GSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPS 44
Score = 40.6 bits (96), Expect = 7e-06
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 103 HRRIHTGEKPHFCPVCNKMFRVRSDMKRHLNTH 135
+GEKP+ C C K F + + H H
Sbjct: 3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIH 35
Score = 38.6 bits (91), Expect = 3e-05
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGCE 31
C CGK+F T L H R+H G +P G
Sbjct: 15 CSECGKAFHRHTHLNEHRRIHTGYRPSGPS 44
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 67.9 bits (167), Expect = 2e-16
Identities = 21/41 (51%), Positives = 24/41 (58%)
Query: 75 HRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFC 115
TGE+ Y+C C KAFRA S L H+ IHTGEKP
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGP 43
Score = 47.1 bits (113), Expect = 2e-08
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 51 HSDVKAFQCEYCGKDFARKYSLVVHRRIHTGERNYQCE 88
+ K ++C CGK F +L H+ IHTGE+
Sbjct: 7 GTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS 44
Score = 42.5 bits (101), Expect = 1e-06
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 103 HRRIHTGEKPHFCPVCNKMFRVRSDMKRHLNTH 135
TGEKP+ C C K FR S++ H H
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIH 35
Score = 40.2 bits (95), Expect = 8e-06
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGCE 31
C+ CGK+F + + L H +H G KP G
Sbjct: 15 CNECGKAFRAHSNLTTHQVIHTGEKPSGPS 44
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 67.9 bits (167), Expect = 2e-16
Identities = 18/42 (42%), Positives = 23/42 (54%)
Query: 74 VHRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFC 115
TG++ Y+C C K F +S+L HR IHTGEKP
Sbjct: 2 SSGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 47.5 bits (114), Expect = 2e-08
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 51 HSDVKAFQCEYCGKDFARKYSLVVHRRIHTGERNYQCE 88
+ K ++C CGK F + L HR IHTGE+
Sbjct: 7 GTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 41.3 bits (98), Expect = 4e-06
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 103 HRRIHTGEKPHFCPVCNKMFRVRSDMKRHLNTH 135
TG+KP+ C C K+F S + RH H
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIH 35
Score = 39.4 bits (93), Expect = 2e-05
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGCE 31
C+ CGK F ++ L H +H G KP G
Sbjct: 15 CNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 67.9 bits (167), Expect = 3e-16
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 75 HRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFC 115
TGE+ Y C C KAF S++L H R+HT E
Sbjct: 3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGP 43
Score = 46.7 bits (112), Expect = 3e-08
Identities = 12/38 (31%), Positives = 15/38 (39%)
Query: 51 HSDVKAFQCEYCGKDFARKYSLVVHRRIHTGERNYQCE 88
+ K + C CGK F L H R+HT E
Sbjct: 7 GTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS 44
Score = 42.9 bits (102), Expect = 8e-07
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 102 NHRRIHTGEKPHFCPVCNKMFRVRSDMKRHLNTH 135
+ TGEKP+ C VC K F + + + +HL H
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVH 35
Score = 40.2 bits (95), Expect = 7e-06
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGCE 31
C+ CGK+F S L H RVH G
Sbjct: 15 CNVCGKAFVLSAHLNQHLRVHTQETLSGPS 44
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 67.5 bits (166), Expect = 3e-16
Identities = 17/42 (40%), Positives = 24/42 (57%)
Query: 74 VHRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFC 115
TGE+ Y+C+ C KAF + L H+R+H+GEKP
Sbjct: 2 SSGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGP 43
Score = 47.1 bits (113), Expect = 2e-08
Identities = 15/72 (20%), Positives = 22/72 (30%), Gaps = 29/72 (40%)
Query: 17 VHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYSLVVHR 76
G KPY +C+ C K F+ SL H+
Sbjct: 2 SSGSSGTGEKPY-----------------------------ECDVCRKAFSHHASLTQHQ 32
Query: 77 RIHTGERNYQCE 88
R+H+GE+
Sbjct: 33 RVHSGEKPSGPS 44
Score = 42.5 bits (101), Expect = 1e-06
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 103 HRRIHTGEKPHFCPVCNKMFRVRSDMKRHLNTH 135
TGEKP+ C VC K F + + +H H
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVH 35
Score = 40.6 bits (96), Expect = 5e-06
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGCE 31
CD C K+F +L H RVH G KP G
Sbjct: 15 CDVCRKAFSHHASLTQHQRVHSGEKPSGPS 44
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 67.2 bits (165), Expect = 4e-16
Identities = 18/41 (43%), Positives = 20/41 (48%)
Query: 75 HRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFC 115
TG + Y C C KAF S L H+ IHTGEKP
Sbjct: 3 SGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGP 43
Score = 48.3 bits (116), Expect = 9e-09
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 51 HSDVKAFQCEYCGKDFARKYSLVVHRRIHTGERNYQCE 88
+ VK + C CGK F+ SL H+ IHTGE+
Sbjct: 7 GTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPS 44
Score = 42.1 bits (100), Expect = 1e-06
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 102 NHRRIHTGEKPHFCPVCNKMFRVRSDMKRHLNTH 135
+ TG KP+ C C K F V S + H H
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIH 35
Score = 40.2 bits (95), Expect = 9e-06
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGCE 31
C+ CGK+F ++L H +H G KP G
Sbjct: 15 CNECGKAFSVYSSLTTHQVIHTGEKPSGPS 44
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 67.2 bits (165), Expect = 5e-16
Identities = 21/41 (51%), Positives = 25/41 (60%)
Query: 75 HRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFC 115
TGE+ Y+C C K FR +SYL H+RIHTGEKP
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGP 43
Score = 46.4 bits (111), Expect = 4e-08
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 51 HSDVKAFQCEYCGKDFARKYSLVVHRRIHTGERNYQCE 88
+ K ++C CGK F L H+RIHTGE+
Sbjct: 7 GTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPS 44
Score = 43.7 bits (104), Expect = 4e-07
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 102 NHRRIHTGEKPHFCPVCNKMFRVRSDMKRHLNTH 135
+ TGEKP+ C C K+FR S + RH H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIH 35
Score = 40.2 bits (95), Expect = 1e-05
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGCE 31
C+ CGK F ++ L H R+H G KP G
Sbjct: 15 CNECGKVFRHNSYLSRHQRIHTGEKPSGPS 44
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 66.8 bits (164), Expect = 5e-16
Identities = 22/41 (53%), Positives = 24/41 (58%)
Query: 75 HRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFC 115
TGE+ Y CE C KAF S LQ H+RIHTGEKP
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGP 43
Score = 47.5 bits (114), Expect = 1e-08
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 51 HSDVKAFQCEYCGKDFARKYSLVVHRRIHTGERNYQCE 88
+ K + CE CGK F L H+RIHTGE+
Sbjct: 7 GTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPS 44
Score = 42.1 bits (100), Expect = 2e-06
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 103 HRRIHTGEKPHFCPVCNKMFRVRSDMKRHLNTH 135
TGEKP+ C C K F S ++ H H
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIH 35
Score = 41.4 bits (98), Expect = 3e-06
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGCE 31
C+ CGK+F + L+ H R+H G KP G
Sbjct: 15 CEECGKAFIHDSQLQEHQRIHTGEKPSGPS 44
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 66.7 bits (164), Expect = 5e-16
Identities = 19/41 (46%), Positives = 24/41 (58%)
Query: 75 HRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFC 115
+GE+ Y+C C K F +S+L NH RIHTGEKP
Sbjct: 3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43
Score = 47.5 bits (114), Expect = 2e-08
Identities = 15/37 (40%), Positives = 19/37 (51%)
Query: 51 HSDVKAFQCEYCGKDFARKYSLVVHRRIHTGERNYQC 87
S K ++C CGK F + L H RIHTGE+
Sbjct: 7 GSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43
Score = 41.7 bits (99), Expect = 2e-06
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 102 NHRRIHTGEKPHFCPVCNKMFRVRSDMKRHLNTH 135
+ +GEKP+ C C K+F S + H H
Sbjct: 2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIH 35
Score = 39.4 bits (93), Expect = 2e-05
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGC 30
C+ CGK F ++ L H R+H G KP G
Sbjct: 15 CNECGKVFTQNSHLTNHWRIHTGEKPSGP 43
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 66.8 bits (164), Expect = 6e-16
Identities = 20/41 (48%), Positives = 23/41 (56%)
Query: 75 HRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFC 115
TG+R Y+C C KAF+ S L HRR HTGEKP
Sbjct: 3 SGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGP 43
Score = 49.1 bits (118), Expect = 4e-09
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 51 HSDVKAFQCEYCGKDFARKYSLVVHRRIHTGERNYQC 87
+ + ++C CGK F K SL+ HRR HTGE+
Sbjct: 7 GTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGP 43
Score = 41.8 bits (99), Expect = 2e-06
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 103 HRRIHTGEKPHFCPVCNKMFRVRSDMKRHLNTH 135
TG++P+ C C K F+ +S + H +H
Sbjct: 3 SGSSGTGQRPYECIECGKAFKTKSSLICHRRSH 35
Score = 40.6 bits (96), Expect = 6e-06
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGC 30
C CGK+F + ++L H R H G KP G
Sbjct: 15 CIECGKAFKTKSSLICHRRSHTGEKPSGP 43
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 66.8 bits (164), Expect = 6e-16
Identities = 19/41 (46%), Positives = 25/41 (60%)
Query: 75 HRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFC 115
+GE+ Y C++C KAF S+ L H+RIHTGEKP
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGP 43
Score = 48.3 bits (116), Expect = 9e-09
Identities = 17/37 (45%), Positives = 21/37 (56%)
Query: 51 HSDVKAFQCEYCGKDFARKYSLVVHRRIHTGERNYQC 87
S K + C+YCGK F LV H+RIHTGE+
Sbjct: 7 GSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGP 43
Score = 42.9 bits (102), Expect = 7e-07
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 103 HRRIHTGEKPHFCPVCNKMFRVRSDMKRHLNTH 135
+GEKP+ C C K F + +++ RH H
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIH 35
Score = 40.2 bits (95), Expect = 9e-06
Identities = 15/29 (51%), Positives = 17/29 (58%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGC 30
CD CGK+F S L H R+H G KP G
Sbjct: 15 CDYCGKAFGLSAELVRHQRIHTGEKPSGP 43
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 66.8 bits (164), Expect = 6e-16
Identities = 20/41 (48%), Positives = 23/41 (56%)
Query: 75 HRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFC 115
TGE+ Y C C K+F S+L HRRIHTGEKP
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGP 43
Score = 46.7 bits (112), Expect = 3e-08
Identities = 16/38 (42%), Positives = 20/38 (52%)
Query: 51 HSDVKAFQCEYCGKDFARKYSLVVHRRIHTGERNYQCE 88
+ K + C CGK F +K L HRRIHTGE+
Sbjct: 7 GTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPS 44
Score = 41.3 bits (98), Expect = 3e-06
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 103 HRRIHTGEKPHFCPVCNKMFRVRSDMKRHLNTH 135
TGEKP+ C C K F +S + RH H
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIH 35
Score = 39.8 bits (94), Expect = 1e-05
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGCE 31
C+ CGKSF + L H R+H G KP G
Sbjct: 15 CNECGKSFIQKSHLNRHRRIHTGEKPSGPS 44
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 66.8 bits (164), Expect = 7e-16
Identities = 17/41 (41%), Positives = 20/41 (48%)
Query: 75 HRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFC 115
TGE+ Y+CE C K F L H +HTGEKP
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGP 43
Score = 48.3 bits (116), Expect = 9e-09
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 51 HSDVKAFQCEYCGKDFARKYSLVVHRRIHTGERNYQCE 88
+ K ++CE CGK F + L H +HTGE+
Sbjct: 7 GTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPS 44
Score = 44.1 bits (105), Expect = 3e-07
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 102 NHRRIHTGEKPHFCPVCNKMFRVRSDMKRHLNTH 135
+ TGEKP+ C C K F R D+ H H
Sbjct: 2 SSGSSGTGEKPYKCEECGKGFICRRDLYTHHMVH 35
Score = 41.4 bits (98), Expect = 3e-06
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGCE 31
C+ CGK F L H+ VH G KP G
Sbjct: 15 CEECGKGFICRRDLYTHHMVHTGEKPSGPS 44
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 66.7 bits (164), Expect = 7e-16
Identities = 19/41 (46%), Positives = 24/41 (58%)
Query: 75 HRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFC 115
TGE+ Y+C C K FR +S+L H+ IHTGEKP
Sbjct: 3 SGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGP 43
Score = 45.9 bits (110), Expect = 5e-08
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 51 HSDVKAFQCEYCGKDFARKYSLVVHRRIHTGERNYQCE 88
+ K ++C CGK F R L H+ IHTGE+
Sbjct: 7 GTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPS 44
Score = 42.1 bits (100), Expect = 2e-06
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 103 HRRIHTGEKPHFCPVCNKMFRVRSDMKRHLNTH 135
TGEKP+ C C K+FR S + RH H
Sbjct: 3 SGSSGTGEKPYKCHECGKVFRRNSHLARHQLIH 35
Score = 39.0 bits (92), Expect = 3e-05
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGCE 31
C CGK F ++ L H +H G KP G
Sbjct: 15 CHECGKVFRRNSHLARHQLIHTGEKPSGPS 44
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 66.8 bits (164), Expect = 7e-16
Identities = 18/41 (43%), Positives = 25/41 (60%)
Query: 75 HRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFC 115
TGE+ Y C+ C K+FR +S L H+R+H+GEKP
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGP 43
Score = 47.2 bits (113), Expect = 2e-08
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 51 HSDVKAFQCEYCGKDFARKYSLVVHRRIHTGERNYQCE 88
+ K + C+ CGK F L+ H+R+H+GE+
Sbjct: 7 GTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPS 44
Score = 42.6 bits (101), Expect = 1e-06
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 103 HRRIHTGEKPHFCPVCNKMFRVRSDMKRHLNTH 135
TGEKP+ C C K FR S + +H H
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVH 35
Score = 41.0 bits (97), Expect = 4e-06
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGCE 31
C CGKSF ++ L H RVH G KP G
Sbjct: 15 CKECGKSFRWASCLLKHQRVHSGEKPSGPS 44
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 66.3 bits (163), Expect = 8e-16
Identities = 19/41 (46%), Positives = 23/41 (56%)
Query: 75 HRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFC 115
TGE+ Y+C C K F +S+L HR IHTGEKP
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGP 43
Score = 47.1 bits (113), Expect = 2e-08
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 51 HSDVKAFQCEYCGKDFARKYSLVVHRRIHTGERNYQCE 88
+ K ++C CGK F + LV HR IHTGE+
Sbjct: 7 GTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPS 44
Score = 42.5 bits (101), Expect = 1e-06
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 102 NHRRIHTGEKPHFCPVCNKMFRVRSDMKRHLNTH 135
+ TGEKP+ C C K+F S + RH H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIH 35
Score = 39.0 bits (92), Expect = 2e-05
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGCE 31
C+ CGK F ++ L H +H G KP G
Sbjct: 15 CNECGKVFTQNSHLVRHRGIHTGEKPSGPS 44
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 66.4 bits (163), Expect = 8e-16
Identities = 17/41 (41%), Positives = 22/41 (53%)
Query: 75 HRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFC 115
G++ ++C C K F SS L H+RIHTGEKP
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
Score = 49.4 bits (119), Expect = 3e-09
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 51 HSDVKAFQCEYCGKDFARKYSLVVHRRIHTGERNYQC 87
+ K F+C C K F + SL VH+RIHTGE+
Sbjct: 7 GAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
Score = 40.6 bits (96), Expect = 6e-06
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGC 30
C+ C K+F S++L VH R+H G KP G
Sbjct: 15 CNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
Score = 40.2 bits (95), Expect = 1e-05
Identities = 9/33 (27%), Positives = 11/33 (33%)
Query: 103 HRRIHTGEKPHFCPVCNKMFRVRSDMKRHLNTH 135
G+K C C K F S + H H
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIH 35
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 66.4 bits (163), Expect = 9e-16
Identities = 18/41 (43%), Positives = 20/41 (48%)
Query: 75 HRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFC 115
TG + Y C C KAFR+ SYL H R HTGE
Sbjct: 3 SGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 47.5 bits (114), Expect = 1e-08
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 51 HSDVKAFQCEYCGKDFARKYSLVVHRRIHTGERNYQC 87
+ +K + C CGK F K L++H R HTGE
Sbjct: 7 GTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 41.7 bits (99), Expect = 2e-06
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 102 NHRRIHTGEKPHFCPVCNKMFRVRSDMKRHLNTH 135
+ TG KP+ C C K FR +S + H TH
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTH 35
Score = 40.2 bits (95), Expect = 9e-06
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGC 30
C+ CGK+F S + L +H R H G
Sbjct: 15 CNECGKAFRSKSYLIIHTRTHTGESGPSS 43
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 66.4 bits (163), Expect = 9e-16
Identities = 19/41 (46%), Positives = 21/41 (51%)
Query: 75 HRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFC 115
TGE+ + C C KAF L HRRIHTGEKP
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGP 43
Score = 47.9 bits (115), Expect = 1e-08
Identities = 16/38 (42%), Positives = 19/38 (50%)
Query: 51 HSDVKAFQCEYCGKDFARKYSLVVHRRIHTGERNYQCE 88
+ K F C CGK F+ L HRRIHTGE+
Sbjct: 7 GTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPS 44
Score = 42.5 bits (101), Expect = 1e-06
Identities = 11/33 (33%), Positives = 13/33 (39%)
Query: 103 HRRIHTGEKPHFCPVCNKMFRVRSDMKRHLNTH 135
TGEKP C C K F + +H H
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIH 35
Score = 40.6 bits (96), Expect = 7e-06
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGCE 31
C CGK+F L H R+H G KP G
Sbjct: 15 CIDCGKAFSDHIGLNQHRRIHTGEKPSGPS 44
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 66.0 bits (162), Expect = 1e-15
Identities = 20/41 (48%), Positives = 24/41 (58%)
Query: 75 HRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFC 115
TGE+ Y+C C KAF +S L H+RIHTGEKP
Sbjct: 3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGP 43
Score = 47.9 bits (115), Expect = 1e-08
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 51 HSDVKAFQCEYCGKDFARKYSLVVHRRIHTGERNYQCE 88
+ K ++C CGK F++ L H+RIHTGE+
Sbjct: 7 GTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPS 44
Score = 41.0 bits (97), Expect = 4e-06
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 102 NHRRIHTGEKPHFCPVCNKMFRVRSDMKRHLNTH 135
+ TGEKP+ C C K F S + RH H
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIH 35
Score = 39.8 bits (94), Expect = 1e-05
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGCE 31
C+ CGK+F ++ L H R+H G KP G
Sbjct: 15 CNECGKAFSQTSKLARHQRIHTGEKPSGPS 44
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 66.0 bits (162), Expect = 1e-15
Identities = 19/41 (46%), Positives = 23/41 (56%)
Query: 75 HRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFC 115
TGE+ Y+C C KAFRA S L H+ H+GEKP
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 47.1 bits (113), Expect = 2e-08
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 51 HSDVKAFQCEYCGKDFARKYSLVVHRRIHTGERNYQC 87
+ K ++C CGK F + SL +H+ H+GE+
Sbjct: 7 GTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 42.9 bits (102), Expect = 9e-07
Identities = 15/33 (45%), Positives = 17/33 (51%)
Query: 103 HRRIHTGEKPHFCPVCNKMFRVRSDMKRHLNTH 135
TGEKP+ C C K FR RS + H TH
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQATH 35
Score = 40.2 bits (95), Expect = 7e-06
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGC 30
C+ CGK+F + ++L +H H G KP G
Sbjct: 15 CNECGKAFRARSSLAIHQATHSGEKPSGP 43
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 66.0 bits (162), Expect = 1e-15
Identities = 18/41 (43%), Positives = 23/41 (56%)
Query: 75 HRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFC 115
TGE+ Y+C C K F +S L H++IHTGEKP
Sbjct: 3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGP 43
Score = 48.7 bits (117), Expect = 5e-09
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 51 HSDVKAFQCEYCGKDFARKYSLVVHRRIHTGERNYQCE 88
+ K ++C CGK F+R L H++IHTGE+
Sbjct: 7 GTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPS 44
Score = 40.2 bits (95), Expect = 9e-06
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 103 HRRIHTGEKPHFCPVCNKMFRVRSDMKRHLNTH 135
TGEK + C C K+F S + +H H
Sbjct: 3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIH 35
Score = 39.8 bits (94), Expect = 1e-05
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGCE 31
C+ CGK F ++ L H ++H G KP G
Sbjct: 15 CNECGKVFSRNSQLSQHQKIHTGEKPSGPS 44
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 66.0 bits (162), Expect = 1e-15
Identities = 19/41 (46%), Positives = 23/41 (56%)
Query: 75 HRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFC 115
TGE+ Y+C C K F +S+L HR IHTGEKP
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 46.7 bits (112), Expect = 3e-08
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 51 HSDVKAFQCEYCGKDFARKYSLVVHRRIHTGERNYQCE 88
+ K ++C CGK F + L HR IHTGE+
Sbjct: 7 GTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 41.3 bits (98), Expect = 4e-06
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 103 HRRIHTGEKPHFCPVCNKMFRVRSDMKRHLNTH 135
TGEKP+ C C K+F S + RH H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIH 35
Score = 39.4 bits (93), Expect = 2e-05
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGCE 31
C+ CGK F ++ L H +H G KP G
Sbjct: 15 CNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 66.0 bits (162), Expect = 1e-15
Identities = 19/41 (46%), Positives = 25/41 (60%)
Query: 75 HRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFC 115
TGER ++C C K+F S++L H+RIHTGEKP
Sbjct: 3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGP 43
Score = 47.5 bits (114), Expect = 2e-08
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 51 HSDVKAFQCEYCGKDFARKYSLVVHRRIHTGERNYQCE 88
+ + +C CGK F + L+ H+RIHTGE+
Sbjct: 7 GTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPS 44
Score = 41.0 bits (97), Expect = 4e-06
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 102 NHRRIHTGEKPHFCPVCNKMFRVRSDMKRHLNTH 135
+ TGE+PH C C K F + + +H H
Sbjct: 2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIH 35
Score = 39.8 bits (94), Expect = 1e-05
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGCE 31
C+ CGKSF S L H R+H G KP G
Sbjct: 15 CNECGKSFIQSAHLIQHQRIHTGEKPSGPS 44
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 66.0 bits (162), Expect = 1e-15
Identities = 18/41 (43%), Positives = 21/41 (51%)
Query: 75 HRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFC 115
GER ++C C K F +S HRRIHTGEKP
Sbjct: 3 SGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGP 43
Score = 47.5 bits (114), Expect = 1e-08
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 51 HSDVKAFQCEYCGKDFARKYSLVVHRRIHTGERNYQC 87
+ +C CGK F + + + HRRIHTGE+
Sbjct: 7 GHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGP 43
Score = 42.9 bits (102), Expect = 8e-07
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 102 NHRRIHTGEKPHFCPVCNKMFRVRSDMKRHLNTH 135
+ GE+ H C C K F S+ +H H
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQHRRIH 35
Score = 40.2 bits (95), Expect = 7e-06
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGC 30
C CGK F ++ H R+H G KP G
Sbjct: 15 CSDCGKFFLQASNFIQHRRIHTGEKPSGP 43
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 44
Score = 65.6 bits (161), Expect = 1e-15
Identities = 14/41 (34%), Positives = 17/41 (41%)
Query: 75 HRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFC 115
+GE+ Y+C C KAF S L H R H G
Sbjct: 3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 46.0 bits (110), Expect = 6e-08
Identities = 14/37 (37%), Positives = 17/37 (45%)
Query: 51 HSDVKAFQCEYCGKDFARKYSLVVHRRIHTGERNYQC 87
S K ++C CGK F K L+VH R H G
Sbjct: 7 GSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 41.4 bits (98), Expect = 3e-06
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 102 NHRRIHTGEKPHFCPVCNKMFRVRSDMKRHLNTH 135
+ +GEKP+ C C K F +S + H TH
Sbjct: 2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHERTH 35
Score = 37.9 bits (89), Expect = 5e-05
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGC 30
C+ CGK+F + L VH R H G+
Sbjct: 15 CNECGKAFIWKSLLIVHERTHAGVSGPSS 43
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 66.0 bits (162), Expect = 1e-15
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 75 HRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFC 115
TGE+ Y C+ C K+F + L H R+H+GEKP
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43
Score = 48.3 bits (116), Expect = 7e-09
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 51 HSDVKAFQCEYCGKDFARKYSLVVHRRIHTGERNYQC 87
+ K + C+ CGK F+R L+ H R+H+GE+
Sbjct: 7 GTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43
Score = 42.5 bits (101), Expect = 1e-06
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 102 NHRRIHTGEKPHFCPVCNKMFRVRSDMKRHLNTH 135
+ TGEK + C C K F + +H H
Sbjct: 2 SSGSSGTGEKLYNCKECGKSFSRAPCLLKHERLH 35
Score = 40.6 bits (96), Expect = 7e-06
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGC 30
C CGKSF + L H R+H G KP G
Sbjct: 15 CKECGKSFSRAPCLLKHERLHSGEKPSGP 43
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 65.6 bits (161), Expect = 2e-15
Identities = 18/41 (43%), Positives = 23/41 (56%)
Query: 75 HRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFC 115
TGE+ Y+C C K F +S+L HRR+HTG KP
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGP 43
Score = 47.1 bits (113), Expect = 2e-08
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 51 HSDVKAFQCEYCGKDFARKYSLVVHRRIHTGERNYQCE 88
+ K ++C CGK F + L HRR+HTG +
Sbjct: 7 GTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPS 44
Score = 41.0 bits (97), Expect = 4e-06
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 103 HRRIHTGEKPHFCPVCNKMFRVRSDMKRHLNTH 135
TGEKP+ C C K+F S + RH H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVH 35
Score = 39.8 bits (94), Expect = 1e-05
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGCE 31
C+ CGK F ++ L H RVH G KP G
Sbjct: 15 CNECGKVFTQNSHLARHRRVHTGGKPSGPS 44
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 65.6 bits (161), Expect = 2e-15
Identities = 18/41 (43%), Positives = 26/41 (63%)
Query: 75 HRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFC 115
+GE+ ++C+ C KAFR + +L +H RIHTGEKP
Sbjct: 3 SGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGP 43
Score = 47.9 bits (115), Expect = 1e-08
Identities = 16/38 (42%), Positives = 20/38 (52%)
Query: 51 HSDVKAFQCEYCGKDFARKYSLVVHRRIHTGERNYQCE 88
S K F+C+ CGK F + L H RIHTGE+
Sbjct: 7 GSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPS 44
Score = 41.3 bits (98), Expect = 3e-06
Identities = 12/33 (36%), Positives = 14/33 (42%)
Query: 103 HRRIHTGEKPHFCPVCNKMFRVRSDMKRHLNTH 135
+GEKP C C K FR + HL H
Sbjct: 3 SGSSGSGEKPFKCKECGKAFRQNIHLASHLRIH 35
Score = 39.4 bits (93), Expect = 2e-05
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGCE 31
C CGK+F + L H R+H G KP G
Sbjct: 15 CKECGKAFRQNIHLASHLRIHTGEKPSGPS 44
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 65.6 bits (161), Expect = 2e-15
Identities = 19/41 (46%), Positives = 24/41 (58%)
Query: 75 HRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFC 115
TGE+ ++C C K+F SS L H+RIHTGEKP
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGP 43
Score = 47.9 bits (115), Expect = 1e-08
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 51 HSDVKAFQCEYCGKDFARKYSLVVHRRIHTGERNYQCE 88
+ K F+C CGK F+ L H+RIHTGE+
Sbjct: 7 GTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPS 44
Score = 41.7 bits (99), Expect = 2e-06
Identities = 12/33 (36%), Positives = 14/33 (42%)
Query: 103 HRRIHTGEKPHFCPVCNKMFRVRSDMKRHLNTH 135
TGEKP C C K F + S + H H
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATHQRIH 35
Score = 41.3 bits (98), Expect = 3e-06
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGCE 31
C CGKSF S+ L H R+H G KP G
Sbjct: 15 CAECGKSFSISSQLATHQRIHTGEKPSGPS 44
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 65.6 bits (161), Expect = 2e-15
Identities = 21/41 (51%), Positives = 24/41 (58%)
Query: 75 HRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFC 115
TGER+Y+C C KAF S L H+RIHTGEKP
Sbjct: 3 SGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGP 43
Score = 49.4 bits (119), Expect = 3e-09
Identities = 16/37 (43%), Positives = 25/37 (67%)
Query: 51 HSDVKAFQCEYCGKDFARKYSLVVHRRIHTGERNYQC 87
+ + ++C CGK FARK +L++H+RIHTGE+
Sbjct: 7 GTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGP 43
Score = 40.6 bits (96), Expect = 7e-06
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 103 HRRIHTGEKPHFCPVCNKMFRVRSDMKRHLNTH 135
TGE+ + C C K F +S + H H
Sbjct: 3 SGSSGTGERHYECSECGKAFARKSTLIMHQRIH 35
Score = 39.8 bits (94), Expect = 1e-05
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGC 30
C CGK+F + L +H R+H G KP G
Sbjct: 15 CSECGKAFARKSTLIMHQRIHTGEKPSGP 43
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 65.6 bits (161), Expect = 2e-15
Identities = 18/41 (43%), Positives = 26/41 (63%)
Query: 75 HRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFC 115
+GE+ +QCE C K F +S+L +H+R+HTGEKP
Sbjct: 3 SGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGP 43
Score = 48.3 bits (116), Expect = 7e-09
Identities = 18/39 (46%), Positives = 22/39 (56%)
Query: 49 SLHSDVKAFQCEYCGKDFARKYSLVVHRRIHTGERNYQC 87
S S K FQCE CGK F + L H+R+HTGE+
Sbjct: 5 SSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGP 43
Score = 40.6 bits (96), Expect = 6e-06
Identities = 11/33 (33%), Positives = 13/33 (39%)
Query: 103 HRRIHTGEKPHFCPVCNKMFRVRSDMKRHLNTH 135
+GEKP C C K F S + H H
Sbjct: 3 SGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVH 35
Score = 39.8 bits (94), Expect = 1e-05
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGC 30
C+ CGK F ++ L H RVH G KP G
Sbjct: 15 CEECGKRFTQNSHLHSHQRVHTGEKPSGP 43
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 65.7 bits (161), Expect = 2e-15
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 75 HRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFC 115
TGE+ Y+C C KAF +S H+R+HTG++P
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGP 43
Score = 46.8 bits (112), Expect = 2e-08
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 51 HSDVKAFQCEYCGKDFARKYSLVVHRRIHTGERNYQCE 88
+ K ++C CGK F S H+R+HTG+R
Sbjct: 7 GTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPS 44
Score = 42.2 bits (100), Expect = 2e-06
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 102 NHRRIHTGEKPHFCPVCNKMFRVRSDMKRHLNTH 135
+ TGEKP+ C C K F S +H H
Sbjct: 2 SSGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLH 35
Score = 40.3 bits (95), Expect = 9e-06
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGCE 31
C CGK+F +++ H R+H G +P G
Sbjct: 15 CMECGKAFGDNSSCTQHQRLHTGQRPSGPS 44
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 65.6 bits (161), Expect = 2e-15
Identities = 19/41 (46%), Positives = 23/41 (56%)
Query: 75 HRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFC 115
TG + YQC C KAF +S L H+R+HTGEKP
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGP 43
Score = 48.3 bits (116), Expect = 9e-09
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 51 HSDVKAFQCEYCGKDFARKYSLVVHRRIHTGERNYQCE 88
+ K +QC CGK F++ L H+R+HTGE+
Sbjct: 7 GTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPS 44
Score = 40.6 bits (96), Expect = 7e-06
Identities = 12/33 (36%), Positives = 14/33 (42%)
Query: 103 HRRIHTGEKPHFCPVCNKMFRVRSDMKRHLNTH 135
TG KP+ C C K F S + RH H
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVH 35
Score = 40.2 bits (95), Expect = 8e-06
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGCE 31
C+ CGK+F ++ L H RVH G KP G
Sbjct: 15 CNECGKAFSQTSKLARHQRVHTGEKPSGPS 44
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 65.6 bits (161), Expect = 2e-15
Identities = 20/41 (48%), Positives = 23/41 (56%)
Query: 75 HRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFC 115
TGER+Y+C C KAF S L H+RIH GEKP
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
Score = 46.7 bits (112), Expect = 3e-08
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 51 HSDVKAFQCEYCGKDFARKYSLVVHRRIHTGERNYQC 87
+ + ++C CGK F +K +L +H+RIH GE+
Sbjct: 7 GTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
Score = 41.0 bits (97), Expect = 5e-06
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 103 HRRIHTGEKPHFCPVCNKMFRVRSDMKRHLNTH 135
TGE+ + C C K F +S + H H
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRIH 35
Score = 40.2 bits (95), Expect = 7e-06
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGC 30
C CGK+F + L +H R+H G KP G
Sbjct: 15 CSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 65.6 bits (161), Expect = 2e-15
Identities = 17/41 (41%), Positives = 21/41 (51%)
Query: 75 HRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFC 115
TGE+ Y C C KAF S L H++IHT +KP
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGP 43
Score = 47.9 bits (115), Expect = 1e-08
Identities = 11/38 (28%), Positives = 20/38 (52%)
Query: 51 HSDVKAFQCEYCGKDFARKYSLVVHRRIHTGERNYQCE 88
+ K + C CGK F + +L+ H++IHT ++
Sbjct: 7 GTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPS 44
Score = 44.4 bits (106), Expect = 2e-07
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 102 NHRRIHTGEKPHFCPVCNKMFRVRSDMKRHLNTH 135
+ TGEKP+ C C K F +RS++ +H H
Sbjct: 2 SSGSSGTGEKPYICAECGKAFTIRSNLIKHQKIH 35
Score = 39.4 bits (93), Expect = 2e-05
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGCE 31
C CGK+F + L H ++H KP G
Sbjct: 15 CAECGKAFTIRSNLIKHQKIHTKQKPSGPS 44
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 65.2 bits (160), Expect = 2e-15
Identities = 17/42 (40%), Positives = 20/42 (47%)
Query: 74 VHRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFC 115
TGE+ Y+C C KAF S L H+R HTGE
Sbjct: 2 SSGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 48.6 bits (117), Expect = 5e-09
Identities = 17/71 (23%), Positives = 21/71 (29%), Gaps = 29/71 (40%)
Query: 17 VHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYSLVVHR 76
G KPY +C C K F K +L+VH+
Sbjct: 2 SSGSSGTGEKPY-----------------------------ECNECQKAFNTKSNLMVHQ 32
Query: 77 RIHTGERNYQC 87
R HTGE
Sbjct: 33 RTHTGESGPSS 43
Score = 41.3 bits (98), Expect = 3e-06
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 103 HRRIHTGEKPHFCPVCNKMFRVRSDMKRHLNTH 135
TGEKP+ C C K F +S++ H TH
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTH 35
Score = 39.4 bits (93), Expect = 1e-05
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGC 30
C+ C K+F + + L VH R H G
Sbjct: 15 CNECQKAFNTKSNLMVHQRTHTGESGPSS 43
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 65.2 bits (160), Expect = 2e-15
Identities = 19/41 (46%), Positives = 24/41 (58%)
Query: 75 HRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFC 115
TGE+ Y+C C K F +S+L NH+RIHTG KP
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGP 43
Score = 47.5 bits (114), Expect = 2e-08
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 51 HSDVKAFQCEYCGKDFARKYSLVVHRRIHTGERNYQCE 88
+ K ++C CGK F + L H+RIHTG +
Sbjct: 7 GTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPS 44
Score = 40.6 bits (96), Expect = 5e-06
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 103 HRRIHTGEKPHFCPVCNKMFRVRSDMKRHLNTH 135
TGEKP+ C C K+F S + H H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQRIH 35
Score = 39.8 bits (94), Expect = 1e-05
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGCE 31
C+ CGK F ++ L H R+H G+KP G
Sbjct: 15 CNECGKVFTQNSHLANHQRIHTGVKPSGPS 44
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 65.2 bits (160), Expect = 2e-15
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 75 HRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFC 115
TGE+ Y+CE C K + + L H+++HTGE+P
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGP 43
Score = 49.1 bits (118), Expect = 3e-09
Identities = 14/37 (37%), Positives = 24/37 (64%)
Query: 51 HSDVKAFQCEYCGKDFARKYSLVVHRRIHTGERNYQC 87
+ K ++CE CGK + K++L +H+++HTGER
Sbjct: 7 GTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGP 43
Score = 42.1 bits (100), Expect = 2e-06
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 103 HRRIHTGEKPHFCPVCNKMFRVRSDMKRHLNTH 135
TGEKP+ C C K + + ++ H H
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVH 35
Score = 41.0 bits (97), Expect = 4e-06
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGC 30
C+ CGK + S L +H +VH G +P G
Sbjct: 15 CEKCGKGYNSKFNLDMHQKVHTGERPSGP 43
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 65.2 bits (160), Expect = 2e-15
Identities = 17/41 (41%), Positives = 25/41 (60%)
Query: 75 HRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFC 115
+GE+ ++CE C K F +S L +H+R+HTGEKP
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGP 43
Score = 47.5 bits (114), Expect = 1e-08
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 51 HSDVKAFQCEYCGKDFARKYSLVVHRRIHTGERNYQC 87
S K F+CE CGK F + L H+R+HTGE+
Sbjct: 7 GSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGP 43
Score = 41.4 bits (98), Expect = 3e-06
Identities = 11/34 (32%), Positives = 14/34 (41%)
Query: 102 NHRRIHTGEKPHFCPVCNKMFRVRSDMKRHLNTH 135
+ +GEKP C C K F S + H H
Sbjct: 2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVH 35
Score = 40.2 bits (95), Expect = 8e-06
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGC 30
C+ CGK F ++ L H RVH G KP G
Sbjct: 15 CEECGKRFTQNSQLHSHQRVHTGEKPSGP 43
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 65.2 bits (160), Expect = 2e-15
Identities = 17/42 (40%), Positives = 20/42 (47%)
Query: 74 VHRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFC 115
+GE+ Y C C K F S L H+R HTGEKP
Sbjct: 2 SSGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGP 43
Score = 47.1 bits (113), Expect = 2e-08
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 51 HSDVKAFQCEYCGKDFARKYSLVVHRRIHTGERNYQCE 88
S K + C CGK F++K L H+R HTGE+
Sbjct: 7 GSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPS 44
Score = 41.4 bits (98), Expect = 3e-06
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 103 HRRIHTGEKPHFCPVCNKMFRVRSDMKRHLNTH 135
+GEKP+ C C K F +S + H TH
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTH 35
Score = 40.2 bits (95), Expect = 9e-06
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGCE 31
C+ CGK+F + L H R H G KP G
Sbjct: 15 CNECGKTFSQKSILSAHQRTHTGEKPSGPS 44
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 65.2 bits (160), Expect = 3e-15
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 75 HRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFC 115
TGE+ Y+C+ C KAF ++L H++ HTGEKP
Sbjct: 3 SGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGP 43
Score = 46.8 bits (112), Expect = 3e-08
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 51 HSDVKAFQCEYCGKDFARKYSLVVHRRIHTGERNYQCE 88
+ K ++C+ C K F +K L H++ HTGE+
Sbjct: 7 GTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44
Score = 41.7 bits (99), Expect = 3e-06
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 103 HRRIHTGEKPHFCPVCNKMFRVRSDMKRHLNTH 135
TGEKP+ C VC+K F ++ + +H TH
Sbjct: 3 SGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTH 35
Score = 40.2 bits (95), Expect = 9e-06
Identities = 11/30 (36%), Positives = 13/30 (43%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGCE 31
C C K+F L H + H G KP G
Sbjct: 15 CKVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 65.2 bits (160), Expect = 3e-15
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 75 HRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFC 115
+GE+ Y+C C K ++ L H+R+HTGEK
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGP 43
Score = 47.9 bits (115), Expect = 1e-08
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 51 HSDVKAFQCEYCGKDFARKYSLVVHRRIHTGERNYQC 87
S K ++C CGK + R+ L H+R+HTGE+
Sbjct: 7 GSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGP 43
Score = 42.9 bits (102), Expect = 8e-07
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 102 NHRRIHTGEKPHFCPVCNKMFRVRSDMKRHLNTH 135
+ +GEKP+ C C K ++ R D+ H H
Sbjct: 2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVH 35
Score = 40.6 bits (96), Expect = 6e-06
Identities = 12/29 (41%), Positives = 13/29 (44%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGC 30
C CGK + L H RVH G K G
Sbjct: 15 CVECGKGYKRRLDLDFHQRVHTGEKLSGP 43
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 65.2 bits (160), Expect = 3e-15
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 74 VHRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFC 115
TGE+ Y+C C KAF L H+RIH+G+KP
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGP 43
Score = 47.9 bits (115), Expect = 1e-08
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 51 HSDVKAFQCEYCGKDFARKYSLVVHRRIHTGERNYQCE 88
+ K ++C CGK F+ + SL VH+RIH+G++
Sbjct: 7 GTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPS 44
Score = 41.7 bits (99), Expect = 2e-06
Identities = 13/33 (39%), Positives = 15/33 (45%)
Query: 103 HRRIHTGEKPHFCPVCNKMFRVRSDMKRHLNTH 135
TGEKP+ C VC K F R + H H
Sbjct: 3 SGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIH 35
Score = 40.6 bits (96), Expect = 7e-06
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGCE 31
C CGK+F +L VH R+H G KP G
Sbjct: 15 CSVCGKAFSHRQSLSVHQRIHSGKKPSGPS 44
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 65.2 bits (160), Expect = 3e-15
Identities = 17/42 (40%), Positives = 20/42 (47%)
Query: 74 VHRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFC 115
TGE Y+C C KAF L +H+R H GEKP
Sbjct: 2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGP 43
Score = 50.2 bits (121), Expect = 1e-09
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 51 HSDVKAFQCEYCGKDFARKYSLVVHRRIHTGERNYQC 87
+ ++C CGK F+RKY L+ H+R H GE+
Sbjct: 7 GTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGP 43
Score = 40.6 bits (96), Expect = 6e-06
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 103 HRRIHTGEKPHFCPVCNKMFRVRSDMKRHLNTH 135
TGE P+ C C K F + + H TH
Sbjct: 3 SGSSGTGENPYECHECGKAFSRKYQLISHQRTH 35
Score = 39.0 bits (92), Expect = 2e-05
Identities = 13/29 (44%), Positives = 14/29 (48%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGC 30
C CGK+F L H R H G KP G
Sbjct: 15 CHECGKAFSRKYQLISHQRTHAGEKPSGP 43
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.9 bits (159), Expect = 3e-15
Identities = 18/41 (43%), Positives = 21/41 (51%)
Query: 75 HRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFC 115
GE+ Y C C KAF + SYL H R H+GEKP
Sbjct: 3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGP 43
Score = 49.5 bits (119), Expect = 3e-09
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 51 HSDVKAFQCEYCGKDFARKYSLVVHRRIHTGERNYQCE 88
+ K + C CGK F+ K L++H R H+GE+
Sbjct: 7 GAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPS 44
Score = 41.0 bits (97), Expect = 5e-06
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 102 NHRRIHTGEKPHFCPVCNKMFRVRSDMKRHLNTH 135
+ GEKP+ C C K F +S + H+ TH
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTH 35
Score = 40.2 bits (95), Expect = 7e-06
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGCE 31
C CGK+F S + L +H R H G KP G
Sbjct: 15 CSECGKAFSSKSYLIIHMRTHSGEKPSGPS 44
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.9 bits (159), Expect = 3e-15
Identities = 18/41 (43%), Positives = 22/41 (53%)
Query: 75 HRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFC 115
TGE+ Y+C C KAF S L H+ IHTG+KP
Sbjct: 3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGP 43
Score = 47.1 bits (113), Expect = 2e-08
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 51 HSDVKAFQCEYCGKDFARKYSLVVHRRIHTGERNYQCE 88
+ K ++C CGK F+ + SL H+ IHTG++
Sbjct: 7 GTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS 44
Score = 41.4 bits (98), Expect = 3e-06
Identities = 14/33 (42%), Positives = 16/33 (48%)
Query: 103 HRRIHTGEKPHFCPVCNKMFRVRSDMKRHLNTH 135
TGEKP+ C C K F VRS + H H
Sbjct: 3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIH 35
Score = 39.8 bits (94), Expect = 1e-05
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGCE 31
C+ CGK+F ++L H +H G KP G
Sbjct: 15 CNQCGKAFSVRSSLTTHQAIHTGKKPSGPS 44
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 64.8 bits (159), Expect = 3e-15
Identities = 18/41 (43%), Positives = 26/41 (63%)
Query: 75 HRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFC 115
TGE+ Y+C+ C KAF +++L H+R+HTGEKP
Sbjct: 3 SGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43
Score = 46.7 bits (112), Expect = 3e-08
Identities = 13/37 (35%), Positives = 23/37 (62%)
Query: 51 HSDVKAFQCEYCGKDFARKYSLVVHRRIHTGERNYQC 87
+ K ++C+ CGK F++ L+ H+R+HTGE+
Sbjct: 7 GTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43
Score = 40.2 bits (95), Expect = 9e-06
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 103 HRRIHTGEKPHFCPVCNKMFRVRSDMKRHLNTH 135
TGEKP+ C C K F + + +H H
Sbjct: 3 SGSSGTGEKPYECKECGKAFSQTTHLIQHQRVH 35
Score = 39.8 bits (94), Expect = 1e-05
Identities = 15/29 (51%), Positives = 17/29 (58%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGC 30
C CGK+F +T L H RVH G KP G
Sbjct: 15 CKECGKAFSQTTHLIQHQRVHTGEKPSGP 43
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 64.8 bits (159), Expect = 3e-15
Identities = 19/41 (46%), Positives = 23/41 (56%)
Query: 75 HRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFC 115
TGE+ Y+C C KAF + L H+RIHTGEKP
Sbjct: 3 SGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43
Score = 47.5 bits (114), Expect = 2e-08
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 51 HSDVKAFQCEYCGKDFARKYSLVVHRRIHTGERNYQC 87
+ K ++C CGK FA+K +L H+RIHTGE+
Sbjct: 7 GTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43
Score = 41.3 bits (98), Expect = 3e-06
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 102 NHRRIHTGEKPHFCPVCNKMFRVRSDMKRHLNTH 135
+ TGEKP+ C C K F ++++ +H H
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIH 35
Score = 39.4 bits (93), Expect = 2e-05
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGC 30
C CGK+F L H R+H G KP G
Sbjct: 15 CGECGKAFAQKANLTQHQRIHTGEKPSGP 43
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 64.8 bits (159), Expect = 3e-15
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 75 HRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFC 115
+ E+ Y+CE C K + L H+R+H GEK
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
Score = 49.8 bits (120), Expect = 2e-09
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 51 HSDVKAFQCEYCGKDFARKYSLVVHRRIHTGERNYQC 87
S K ++CE CGK + R+ +L +H+R+H GE+
Sbjct: 7 GSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
Score = 43.3 bits (103), Expect = 6e-07
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 102 NHRRIHTGEKPHFCPVCNKMFRVRSDMKRHLNTH 135
+ + EKP+ C C K + R ++ H H
Sbjct: 2 SSGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVH 35
Score = 40.6 bits (96), Expect = 6e-06
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGC 30
C+ CGK + L +H RVH+G K G
Sbjct: 15 CEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.8 bits (159), Expect = 4e-15
Identities = 19/41 (46%), Positives = 23/41 (56%)
Query: 75 HRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFC 115
TGE+ Y+C C KAF S L H++IHTGEKP
Sbjct: 3 SGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
Score = 47.5 bits (114), Expect = 2e-08
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 51 HSDVKAFQCEYCGKDFARKYSLVVHRRIHTGERNYQCE 88
+ K ++C CGK F + +L H++IHTGE+
Sbjct: 7 GTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPS 44
Score = 42.5 bits (101), Expect = 1e-06
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 103 HRRIHTGEKPHFCPVCNKMFRVRSDMKRHLNTH 135
TGEKP+ C C K F RS++ H H
Sbjct: 3 SGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIH 35
Score = 40.6 bits (96), Expect = 6e-06
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGCE 31
C CGK+F + L H ++H G KP G
Sbjct: 15 CAECGKAFTDRSNLFTHQKIHTGEKPSGPS 44
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.8 bits (159), Expect = 4e-15
Identities = 20/41 (48%), Positives = 22/41 (53%)
Query: 75 HRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFC 115
TGER Y C C KAF S L H++IHTGEKP
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 47.5 bits (114), Expect = 1e-08
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 51 HSDVKAFQCEYCGKDFARKYSLVVHRRIHTGERNYQC 87
+ + + C CGK F + +L+ H++IHTGE+
Sbjct: 7 GTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 44.0 bits (105), Expect = 3e-07
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 103 HRRIHTGEKPHFCPVCNKMFRVRSDMKRHLNTH 135
TGE+P+ C VC K F RS++ +H H
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIH 35
Score = 39.8 bits (94), Expect = 1e-05
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGC 30
C CGK+F + L H ++H G KP G
Sbjct: 15 CTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 45
Score = 64.5 bits (158), Expect = 4e-15
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 75 HRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFC 115
TG++ ++C C K+FRA L H+RIHTGEK
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 49.5 bits (119), Expect = 3e-09
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 51 HSDVKAFQCEYCGKDFARKYSLVVHRRIHTGERNYQC 87
+ K F+C +CGK F K +LV H+RIHTGE++
Sbjct: 7 GTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 42.1 bits (100), Expect = 1e-06
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 102 NHRRIHTGEKPHFCPVCNKMFRVRSDMKRHLNTH 135
+ TG+KP C C K FR + ++ H H
Sbjct: 2 SSGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIH 35
Score = 38.7 bits (91), Expect = 3e-05
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGC 30
C CGKSF + L H R+H G K
Sbjct: 15 CTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.5 bits (158), Expect = 4e-15
Identities = 18/42 (42%), Positives = 22/42 (52%)
Query: 74 VHRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFC 115
TGE+ Y+C C K+F S L H+RIHTGE P
Sbjct: 2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 48.7 bits (117), Expect = 6e-09
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 51 HSDVKAFQCEYCGKDFARKYSLVVHRRIHTGERNYQC 87
+ K ++C CGK F +K L VH+RIHTGE
Sbjct: 7 GTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 41.0 bits (97), Expect = 4e-06
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGC 30
C CGKSF + L VH R+H G P G
Sbjct: 15 CSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 41.0 bits (97), Expect = 4e-06
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 103 HRRIHTGEKPHFCPVCNKMFRVRSDMKRHLNTH 135
TGEKP+ C C K F +S + H H
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIH 35
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.5 bits (158), Expect = 4e-15
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 75 HRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFC 115
TGE+ Y+C C K+F S L+ H++ HTGE+
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 47.1 bits (113), Expect = 2e-08
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 51 HSDVKAFQCEYCGKDFARKYSLVVHRRIHTGERNYQC 87
+ K ++C CGK F K L +H++ HTGER+
Sbjct: 7 GTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 42.9 bits (102), Expect = 9e-07
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 102 NHRRIHTGEKPHFCPVCNKMFRVRSDMKRHLNTH 135
+ TGEKP+ C C K F +S ++ H H
Sbjct: 2 SSGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCH 35
Score = 40.6 bits (96), Expect = 6e-06
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGC 30
C CGKSF + L++H + H G + G
Sbjct: 15 CSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 64.5 bits (158), Expect = 4e-15
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 75 HRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFC 115
TGE+ ++C C K++ +L H+R+HTGEKP
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43
Score = 47.1 bits (113), Expect = 2e-08
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 51 HSDVKAFQCEYCGKDFARKYSLVVHRRIHTGERNYQC 87
+ K F+C CGK + ++ L H+R+HTGE+
Sbjct: 7 GTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43
Score = 41.0 bits (97), Expect = 5e-06
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 103 HRRIHTGEKPHFCPVCNKMFRVRSDMKRHLNTH 135
TGEKP C C K + R + +H H
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVH 35
Score = 39.0 bits (92), Expect = 2e-05
Identities = 14/29 (48%), Positives = 15/29 (51%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGC 30
C CGKS+ L H RVH G KP G
Sbjct: 15 CGECGKSYNQRVHLTQHQRVHTGEKPSGP 43
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.5 bits (158), Expect = 5e-15
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 75 HRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFC 115
TGE+ ++C C K+F +S L H+RIHTGE P
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGP 43
Score = 47.9 bits (115), Expect = 1e-08
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 51 HSDVKAFQCEYCGKDFARKYSLVVHRRIHTGERNYQC 87
+ K +C CGK F+ L+VH+RIHTGE
Sbjct: 7 GTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGP 43
Score = 41.0 bits (97), Expect = 5e-06
Identities = 13/33 (39%), Positives = 14/33 (42%)
Query: 103 HRRIHTGEKPHFCPVCNKMFRVRSDMKRHLNTH 135
TGEKPH C C K F S + H H
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIH 35
Score = 40.2 bits (95), Expect = 7e-06
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGC 30
C CGKSF ++ L VH R+H G P G
Sbjct: 15 CRECGKSFSFNSQLIVHQRIHTGENPSGP 43
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 64.5 bits (158), Expect = 5e-15
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 75 HRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFC 115
+GE+ ++CE C K F +S +H+R H+GEKP
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGP 43
Score = 48.3 bits (116), Expect = 8e-09
Identities = 14/38 (36%), Positives = 18/38 (47%)
Query: 51 HSDVKAFQCEYCGKDFARKYSLVVHRRIHTGERNYQCE 88
S K F+CE CGK F H+R H+GE+
Sbjct: 7 GSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS 44
Score = 42.2 bits (100), Expect = 2e-06
Identities = 11/34 (32%), Positives = 14/34 (41%)
Query: 102 NHRRIHTGEKPHFCPVCNKMFRVRSDMKRHLNTH 135
+ +GEKP C C K F S H +H
Sbjct: 2 SSGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSH 35
Score = 41.8 bits (99), Expect = 2e-06
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGCEVCG 34
C+ CGK F++++ H R H G KP G G
Sbjct: 15 CEECGKGFYTNSQCYSHQRSHSGEKPSGPS-SG 46
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.5 bits (158), Expect = 5e-15
Identities = 18/42 (42%), Positives = 23/42 (54%)
Query: 74 VHRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFC 115
TGE+ Y+C C K+F S L H++IHTGEKP
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGP 43
Score = 47.9 bits (115), Expect = 1e-08
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 51 HSDVKAFQCEYCGKDFARKYSLVVHRRIHTGERNYQC 87
+ K ++C CGK F +K L VH++IHTGE+
Sbjct: 7 GTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGP 43
Score = 41.4 bits (98), Expect = 3e-06
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 103 HRRIHTGEKPHFCPVCNKMFRVRSDMKRHLNTH 135
TGEKP+ C +C K F +S + H H
Sbjct: 3 SGSSGTGEKPYECSICGKSFTKKSQLHVHQQIH 35
Score = 41.0 bits (97), Expect = 4e-06
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGC 30
C CGKSF + L VH ++H G KP G
Sbjct: 15 CSICGKSFTKKSQLHVHQQIHTGEKPSGP 43
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 64.5 bits (158), Expect = 5e-15
Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 75 HRRIHTGERNYQCEFCHKAFRASSYLQNH-RRIHTGEKPHFCPVCNKMF 122
+ + Y C+ C K F +L H +++HT E+PH C V
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGP 51
Score = 58.4 bits (142), Expect = 1e-12
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 49 SLHSDVKAFQCEYCGKDFARKYSLVVH-RRIHTGERNYQCEFCHKAF 94
S S K + C+ CGK F+R L H +++HT ER ++C+
Sbjct: 5 SSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGP 51
Score = 45.6 bits (109), Expect = 1e-07
Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 2 CDTCGKSFFSSTALKVHN-RVHLGLKPYGCEVCGRHFRQ 39
C +CGK F L H +VH +P+ C+V
Sbjct: 15 CQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS 53
Score = 36.8 bits (86), Expect = 2e-04
Identities = 7/31 (22%), Positives = 12/31 (38%)
Query: 102 NHRRIHTGEKPHFCPVCNKMFRVRSDMKRHL 132
+ + KP+ C C K F + H+
Sbjct: 2 SSGSSGSVGKPYICQSCGKGFSRPDHLNGHI 32
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 65.0 bits (159), Expect = 5e-15
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 75 HRRIHTGERNYQC--EFCHKAFRASSYLQNHRRIHTGEKPHFCPVCNKMFRVRSDMKRHL 132
+ R Y C E C + F S L H RIHTG+KP C +C + F + H+
Sbjct: 10 LNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI 69
Query: 133 NTH 135
TH
Sbjct: 70 RTH 72
Score = 61.6 bits (150), Expect = 1e-13
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 47 KASLHSDVKAFQC--EYCGKDFARKYSLVVHRRIHTGERNYQCEFCHKAFRASSYLQNHR 104
+ ++ + C E C + F+R L H RIHTG++ +QC C + F S +L H
Sbjct: 10 LNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI 69
Query: 105 RIHT 108
R HT
Sbjct: 70 RTHT 73
Score = 45.4 bits (108), Expect = 2e-07
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 5 CGKSFFSSTALKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHK 47
C + F S L H R+H G KP+ C +C R+F + L H
Sbjct: 27 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI 69
Score = 25.0 bits (55), Expect = 6.1
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 2 CDTCGKSFFSSTALKVHNRVH 22
C C ++F S L H R H
Sbjct: 52 CRICMRNFSRSDHLTTHIRTH 72
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.5 bits (158), Expect = 6e-15
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 75 HRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFC 115
TG ++++C C KAF S L H++IHTGEKP
Sbjct: 3 SGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGP 43
Score = 47.9 bits (115), Expect = 1e-08
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 51 HSDVKAFQCEYCGKDFARKYSLVVHRRIHTGERNYQCE 88
+ K F+C CGK F RK +L +H++IHTGE+
Sbjct: 7 GTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPS 44
Score = 41.4 bits (98), Expect = 3e-06
Identities = 10/34 (29%), Positives = 13/34 (38%)
Query: 102 NHRRIHTGEKPHFCPVCNKMFRVRSDMKRHLNTH 135
+ TG K C C K F +S + H H
Sbjct: 2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIH 35
Score = 40.2 bits (95), Expect = 9e-06
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGCE 31
C CGK+F + L +H ++H G KP G
Sbjct: 15 CTECGKAFTRKSTLSMHQKIHTGEKPSGPS 44
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 64.1 bits (157), Expect = 8e-15
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 75 HRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFC 115
TGE+ ++C C K F S L H ++HTGEKP
Sbjct: 3 SGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43
Score = 48.3 bits (116), Expect = 8e-09
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 51 HSDVKAFQCEYCGKDFARKYSLVVHRRIHTGERNYQC 87
+ K F+C CGK F+R+ +L VH ++HTGE+
Sbjct: 7 GTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43
Score = 42.5 bits (101), Expect = 1e-06
Identities = 13/34 (38%), Positives = 15/34 (44%)
Query: 102 NHRRIHTGEKPHFCPVCNKMFRVRSDMKRHLNTH 135
+ TGEKP C C K F RS + H H
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLH 35
Score = 41.0 bits (97), Expect = 5e-06
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGC 30
C CGK F +AL VH+++H G KP G
Sbjct: 15 CVECGKGFSRRSALNVHHKLHTGEKPSGP 43
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 63.3 bits (155), Expect = 1e-14
Identities = 16/41 (39%), Positives = 18/41 (43%)
Query: 75 HRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFC 115
TG + Y C C K F S L H+R HTG KP
Sbjct: 3 SGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 49.1 bits (118), Expect = 3e-09
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 51 HSDVKAFQCEYCGKDFARKYSLVVHRRIHTGERNYQC 87
+ VK + C C K F+ K L+VH+R HTG +
Sbjct: 7 GTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 42.1 bits (100), Expect = 2e-06
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 102 NHRRIHTGEKPHFCPVCNKMFRVRSDMKRHLNTH 135
+ TG KP+ C C K F ++S + H +H
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSH 35
Score = 40.2 bits (95), Expect = 9e-06
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGC 30
C C K+F + L VH R H G+KP G
Sbjct: 15 CSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 63.3 bits (155), Expect = 1e-14
Identities = 16/39 (41%), Positives = 19/39 (48%)
Query: 75 HRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPH 113
GE+ Y CE C FR L++H RIHTG P
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 45.6 bits (109), Expect = 8e-08
Identities = 18/68 (26%), Positives = 20/68 (29%), Gaps = 29/68 (42%)
Query: 18 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYSLVVHRR 77
+ G KPY CE+CG FR LK H R
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLK-----------------------------SHLR 32
Query: 78 IHTGERNY 85
IHTG
Sbjct: 33 IHTGSGPS 40
Score = 45.2 bits (108), Expect = 1e-07
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 103 HRRIHTGEKPHFCPVCNKMFRVRSDMKRHLNTH 135
GEKP+ C +C FR +K HL H
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIH 34
Score = 39.4 bits (93), Expect = 2e-05
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPY 28
C+ CG F LK H R+H G P
Sbjct: 14 CEICGTRFRHLQTLKSHLRIHTGSGPS 40
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 63.3 bits (155), Expect = 1e-14
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 75 HRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFC 115
TGE + C C K F + L H++IHTGE+P
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 49.4 bits (119), Expect = 3e-09
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 51 HSDVKAFQCEYCGKDFARKYSLVVHRRIHTGERNYQC 87
+ F C CGK F K +L++H++IHTGER
Sbjct: 7 GTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 42.5 bits (101), Expect = 1e-06
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 102 NHRRIHTGEKPHFCPVCNKMFRVRSDMKRHLNTH 135
+ TGE P C C K+F ++++ H H
Sbjct: 2 SSGSSGTGENPFICSECGKVFTHKTNLIIHQKIH 35
Score = 39.8 bits (94), Expect = 1e-05
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGC 30
C CGK F T L +H ++H G +P G
Sbjct: 15 CSECGKVFTHKTNLIIHQKIHTGERPSGP 43
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 63.3 bits (155), Expect = 1e-14
Identities = 14/41 (34%), Positives = 17/41 (41%)
Query: 75 HRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFC 115
+GER Y C C K F S+L H + H EK
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43
Score = 48.3 bits (116), Expect = 8e-09
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 49 SLHSDVKAFQCEYCGKDFARKYSLVVHRRIHTGERNYQC 87
S S + + C CGK+F R L+ H + H E++
Sbjct: 5 SSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43
Score = 42.1 bits (100), Expect = 2e-06
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 103 HRRIHTGEKPHFCPVCNKMFRVRSDMKRHLNTH 135
+GE+P+ C C K F S + HL H
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRH 35
Score = 37.9 bits (89), Expect = 6e-05
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGC 30
C+ CGK+F + L H + H K G
Sbjct: 15 CNECGKNFGRHSHLIEHLKRHFREKSSGP 43
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 63.3 bits (155), Expect = 1e-14
Identities = 18/41 (43%), Positives = 22/41 (53%)
Query: 75 HRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFC 115
TGE+ ++C C KAF S L H+R HTGEKP
Sbjct: 3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGP 43
Score = 49.8 bits (120), Expect = 2e-09
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 51 HSDVKAFQCEYCGKDFARKYSLVVHRRIHTGERNYQCE 88
+ K F+C C K F K +L+VH+R HTGE+
Sbjct: 7 GTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPS 44
Score = 41.3 bits (98), Expect = 3e-06
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 102 NHRRIHTGEKPHFCPVCNKMFRVRSDMKRHLNTH 135
+ TGEKP C C K F +S++ H TH
Sbjct: 2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTH 35
Score = 39.4 bits (93), Expect = 1e-05
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGCE 31
C C K+F + + L VH R H G KP G
Sbjct: 15 CSECQKAFNTKSNLIVHQRTHTGEKPSGPS 44
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 63.3 bits (155), Expect = 1e-14
Identities = 16/41 (39%), Positives = 18/41 (43%)
Query: 75 HRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFC 115
GE+ YQC C K+F S L H HT EKP
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 49.8 bits (120), Expect = 2e-09
Identities = 14/39 (35%), Positives = 17/39 (43%)
Query: 49 SLHSDVKAFQCEYCGKDFARKYSLVVHRRIHTGERNYQC 87
S K +QC CGK F+ Y L H HT E+
Sbjct: 5 SSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 41.0 bits (97), Expect = 5e-06
Identities = 13/29 (44%), Positives = 13/29 (44%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGC 30
C CGKSF S L H H KP G
Sbjct: 15 CSECGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 39.8 bits (94), Expect = 1e-05
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 103 HRRIHTGEKPHFCPVCNKMFRVRSDMKRHLNTH 135
GEKP+ C C K F + +H TH
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITH 35
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 63.3 bits (155), Expect = 2e-14
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 75 HRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFC 115
TGE+ Y+C C KAF S L H++ HTGE+
Sbjct: 3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 47.9 bits (115), Expect = 1e-08
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 55 KAFQCEYCGKDFARKYSLVVHRRIHTGERNYQC 87
K ++C CGK F RK L +H++ HTGER+
Sbjct: 11 KPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 41.0 bits (97), Expect = 5e-06
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGC 30
C CGK+F + L +H + H G + G
Sbjct: 15 CSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 40.6 bits (96), Expect = 6e-06
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 102 NHRRIHTGEKPHFCPVCNKMFRVRSDMKRHLNTH 135
+ TGEKP+ C C K F +S + H +H
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSH 35
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 62.9 bits (154), Expect = 2e-14
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 75 HRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFC 115
+GER ++C C K F S+L H R+H+ EK
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGP 43
Score = 48.7 bits (117), Expect = 5e-09
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 49 SLHSDVKAFQCEYCGKDFARKYSLVVHRRIHTGERNYQC 87
S S + F+C CGK F R+ L H R+H+ E++
Sbjct: 5 SSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGP 43
Score = 39.4 bits (93), Expect = 1e-05
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGC 30
C+ CGK F + L H R+H K G
Sbjct: 15 CNECGKGFGRRSHLAGHLRLHSREKSSGP 43
Score = 39.4 bits (93), Expect = 2e-05
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 103 HRRIHTGEKPHFCPVCNKMFRVRSDMKRHLNTH 135
+GE+P C C K F RS + HL H
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRLH 35
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 62.9 bits (154), Expect = 2e-14
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 75 HRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFC 115
+G++ Y+C+ C K F +L H+R+HTGE+
Sbjct: 3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGP 43
Score = 48.7 bits (117), Expect = 6e-09
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 49 SLHSDVKAFQCEYCGKDFARKYSLVVHRRIHTGERNYQCE 88
S S K ++C+ C K F + L H+R+HTGER+
Sbjct: 5 SSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPS 44
Score = 40.2 bits (95), Expect = 8e-06
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 103 HRRIHTGEKPHFCPVCNKMFRVRSDMKRHLNTH 135
+G+KP+ C C K F + +H H
Sbjct: 3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRVH 35
Score = 39.4 bits (93), Expect = 2e-05
Identities = 11/30 (36%), Positives = 13/30 (43%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGCE 31
C C K+F L H RVH G + G
Sbjct: 15 CKECRKTFIQIGHLNQHKRVHTGERSSGPS 44
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 63.0 bits (154), Expect = 2e-14
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 75 HRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFC 115
+ +++QC C + F S+L H+RIHTGEKP
Sbjct: 3 SGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43
Score = 47.2 bits (113), Expect = 2e-08
Identities = 17/39 (43%), Positives = 21/39 (53%)
Query: 49 SLHSDVKAFQCEYCGKDFARKYSLVVHRRIHTGERNYQC 87
S S K+ QC CG+ F K L H+RIHTGE+
Sbjct: 5 SSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43
Score = 41.4 bits (98), Expect = 3e-06
Identities = 8/34 (23%), Positives = 15/34 (44%)
Query: 102 NHRRIHTGEKPHFCPVCNKMFRVRSDMKRHLNTH 135
+ + K H C C + F ++S + +H H
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIH 35
Score = 39.5 bits (93), Expect = 1e-05
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGC 30
C CG+ F + L H R+H G KP G
Sbjct: 15 CHECGRGFTLKSHLNQHQRIHTGEKPSGP 43
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 64.0 bits (155), Expect = 4e-14
Identities = 17/110 (15%), Positives = 37/110 (33%), Gaps = 6/110 (5%)
Query: 11 SSTALKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYH----KASLHSDVKAFQCEYCGKDF 66
S ++ K++ + G + C+ C + +L H + +
Sbjct: 3 SGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSK 62
Query: 67 ARKYSLVVHRRIHTGERNYQCEFCHKAFRASSYLQNH--RRIHTGEKPHF 114
RK SL+ ++ +C +C +F + L H + H +
Sbjct: 63 PRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKVSGP 112
Score = 58.2 bits (140), Expect = 7e-12
Identities = 15/99 (15%), Positives = 25/99 (25%), Gaps = 6/99 (6%)
Query: 43 LKYHKASLHSDVKAFQCEYCGKDFARKYSLVVHRRI-----HTGERNYQCEFCHKAFRAS 97
K + S+ + F+C+ C + L VH +
Sbjct: 7 GKLYG-SIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRK 65
Query: 98 SYLQNHRRIHTGEKPHFCPVCNKMFRVRSDMKRHLNTHN 136
L +K C C F D+ H+
Sbjct: 66 RSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTK 104
Score = 40.5 bits (94), Expect = 3e-05
Identities = 8/37 (21%), Positives = 15/37 (40%)
Query: 97 SSYLQNHRRIHTGEKPHFCPVCNKMFRVRSDMKRHLN 133
S + + I TG C C+ + ++ H+N
Sbjct: 4 GSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMN 40
Score = 34.7 bits (79), Expect = 0.004
Identities = 10/50 (20%), Positives = 12/50 (24%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLH 51
+ S +L K C CG F DL H
Sbjct: 55 NNPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTK 104
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 61.8 bits (151), Expect = 5e-14
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 75 HRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPH 113
GE+ Y+CE C F ++L+ H IHTG P
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPS 40
Score = 42.9 bits (102), Expect = 9e-07
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 103 HRRIHTGEKPHFCPVCNKMFRVRSDMKRHLNTH 135
GEKP+ C C F + ++ H+ H
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIH 34
Score = 41.7 bits (99), Expect = 2e-06
Identities = 12/35 (34%), Positives = 15/35 (42%)
Query: 51 HSDVKAFQCEYCGKDFARKYSLVVHRRIHTGERNY 85
K ++CE CG F + L H IHTG
Sbjct: 6 SGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPS 40
Score = 38.3 bits (90), Expect = 4e-05
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPY 28
C+TCG F L+ H +H G P
Sbjct: 14 CETCGARFVQVAHLRAHVLIHTGSGPS 40
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible
early growth response protein 1, TGFB-inducible early
growth response protein 1; NMR {Homo sapiens}
Length = 72
Score = 62.4 bits (152), Expect = 5e-14
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Query: 71 SLVVHRRIHTGERNYQCEF--CHKAFRASSYLQNHRRIHTGEKPHFC--PVCNKMFRVRS 126
+ + R++ C C K + SS+L+ H R HTGEKP C C + F
Sbjct: 4 GSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSD 63
Query: 127 DMKRHLNTH 135
++ RH TH
Sbjct: 64 ELSRHRRTH 72
Score = 55.9 bits (135), Expect = 2e-11
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 51 HSDVKAFQCEY--CGKDFARKYSLVVHRRIHTGERNYQCEF--CHKAFRASSYLQNHRRI 106
S +++ C + CGK + + L H R HTGE+ + C + C + F S L HRR
Sbjct: 12 SSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRT 71
Query: 107 H 107
H
Sbjct: 72 H 72
Score = 42.4 bits (100), Expect = 3e-06
Identities = 23/75 (30%), Positives = 29/75 (38%), Gaps = 27/75 (36%)
Query: 5 CGKSFFSSTALKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGK 64
CGK++F S+ LK H R H G KP+ C + C +
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSW---------------------------KGCER 57
Query: 65 DFARKYSLVVHRRIH 79
FAR L HRR H
Sbjct: 58 RFARSDELSRHRRTH 72
Score = 40.1 bits (94), Expect = 2e-05
Identities = 11/42 (26%), Positives = 16/42 (38%), Gaps = 2/42 (4%)
Query: 96 ASSYLQNHRRIHTGEKPHFCPV--CNKMFRVRSDMKRHLNTH 135
SS + + + H C C K + S +K H TH
Sbjct: 1 GSSGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTH 42
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 42
Score = 61.8 bits (151), Expect = 5e-14
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 75 HRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPH 113
GE+ Y+C+ C KAF L H R+HTG P
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40
Score = 45.6 bits (109), Expect = 8e-08
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 51 HSDVKAFQCEYCGKDFARKYSLVVHRRIHTGERNY 85
K ++C+ CGK F++K SL+VH R+HTG
Sbjct: 6 SGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40
Score = 41.4 bits (98), Expect = 2e-06
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 103 HRRIHTGEKPHFCPVCNKMFRVRSDMKRHLNTH 135
GEKP+ C C K F + + H+ H
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVH 34
Score = 37.9 bits (89), Expect = 5e-05
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPY 28
CD CGK+F +L VH RVH G P
Sbjct: 14 CDQCGKAFSQKGSLIVHIRVHTGSGPS 40
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 61.4 bits (150), Expect = 7e-14
Identities = 12/41 (29%), Positives = 18/41 (43%)
Query: 75 HRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFC 115
TGE Y+C C K F L +H++ H+G+
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 48.3 bits (116), Expect = 7e-09
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 49 SLHSDVKAFQCEYCGKDFARKYSLVVHRRIHTGERNYQC 87
S + ++C CGK F+RK LV H++ H+G+
Sbjct: 5 SSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 37.5 bits (88), Expect = 7e-05
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 103 HRRIHTGEKPHFCPVCNKMFRVRSDMKRHLNTH 135
TGE P+ C C K+F + + H TH
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTH 35
Score = 36.3 bits (85), Expect = 2e-04
Identities = 9/29 (31%), Positives = 10/29 (34%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGC 30
C CGK F L H + H G
Sbjct: 15 CCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 61.4 bits (150), Expect = 8e-14
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 75 HRRIHTGERNYQCEFCHKAFRASSYLQNH-RRIHTGEKPHFCP 116
TG++ Y+C C KAF ++ L H R HTGEKP
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPS 45
Score = 43.3 bits (103), Expect = 6e-07
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 51 HSDVKAFQCEYCGKDFARKYSLVVH-RRIHTGERNYQC 87
+ K ++C CGK F + SL+ H R HTGE+
Sbjct: 7 GTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
Score = 40.2 bits (95), Expect = 8e-06
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 102 NHRRIHTGEKPHFCPVCNKMFRVRSDMKRH 131
+ TG+KP+ C C K F + + RH
Sbjct: 2 SSGSSGTGKKPYECIECGKAFIQNTSLIRH 31
Score = 35.2 bits (82), Expect = 5e-04
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 2 CDTCGKSFFSSTALKVHNR-VHLGLKPYGC 30
C CGK+F +T+L H R H G KP G
Sbjct: 15 CIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 61.1 bits (149), Expect = 9e-14
Identities = 13/41 (31%), Positives = 16/41 (39%)
Query: 75 HRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFC 115
TGE+ +QC+ C F S L H R H P
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43
Score = 45.3 bits (108), Expect = 1e-07
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 49 SLHSDVKAFQCEYCGKDFARKYSLVVHRRIHTGERNYQC 87
S + K FQC+ CG +F+ SL H R H
Sbjct: 5 SSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43
Score = 43.3 bits (103), Expect = 7e-07
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 103 HRRIHTGEKPHFCPVCNKMFRVRSDMKRHLNTH 135
TGEKP C C F + +HL +H
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSH 35
Score = 39.9 bits (94), Expect = 1e-05
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGC 30
C CG +F S +L H R H P G
Sbjct: 15 CKECGMNFSWSCSLFKHLRSHERTDPSGP 43
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 61.0 bits (149), Expect = 9e-14
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 75 HRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFC 115
GE+ ++C C F +S L+ H+ +H GEKP
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGP 43
Score = 48.3 bits (116), Expect = 9e-09
Identities = 11/39 (28%), Positives = 19/39 (48%)
Query: 49 SLHSDVKAFQCEYCGKDFARKYSLVVHRRIHTGERNYQC 87
S K ++C C F++ SL +H+ +H GE+
Sbjct: 5 SSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGP 43
Score = 40.6 bits (96), Expect = 5e-06
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGC 30
C C F +++L++H VH+G KP G
Sbjct: 15 CRECDMCFSQASSLRLHQNVHVGEKPSGP 43
Score = 39.4 bits (93), Expect = 1e-05
Identities = 10/33 (30%), Positives = 13/33 (39%)
Query: 103 HRRIHTGEKPHFCPVCNKMFRVRSDMKRHLNTH 135
GEK C C+ F S ++ H N H
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVH 35
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 60.6 bits (148), Expect = 1e-13
Identities = 14/40 (35%), Positives = 18/40 (45%)
Query: 76 RRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFC 115
+GE Y+C C KAF L +H+R H GE
Sbjct: 2 SSGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 50.6 bits (122), Expect = 1e-09
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 49 SLHSDVKAFQCEYCGKDFARKYSLVVHRRIHTGERNYQC 87
S S ++C CGK F RK L+ H+R H GE
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 38.6 bits (91), Expect = 3e-05
Identities = 10/29 (34%), Positives = 11/29 (37%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGC 30
C CGK+F L H R H G
Sbjct: 13 CSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 36.3 bits (85), Expect = 2e-04
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 104 RRIHTGEKPHFCPVCNKMFRVRSDMKRHLNTH 135
+GE P+ C C K F + + H TH
Sbjct: 2 SSGSSGENPYECSECGKAFNRKDQLISHQRTH 33
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 60.3 bits (147), Expect = 2e-13
Identities = 14/41 (34%), Positives = 18/41 (43%)
Query: 75 HRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFC 115
TGE+ +C C KAF S L H+R H +K
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 48.3 bits (116), Expect = 8e-09
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 49 SLHSDVKAFQCEYCGKDFARKYSLVVHRRIHTGERNYQC 87
S + K +C CGK F K L++H+R H +++
Sbjct: 5 SSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 40.2 bits (95), Expect = 7e-06
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGC 30
C CGK+F + L +H R H+ K G
Sbjct: 15 CTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 39.5 bits (93), Expect = 2e-05
Identities = 13/33 (39%), Positives = 15/33 (45%)
Query: 103 HRRIHTGEKPHFCPVCNKMFRVRSDMKRHLNTH 135
TGEKP C C K F +S + H TH
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTH 35
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 60.3 bits (147), Expect = 2e-13
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 75 HRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFC 115
+GE+++ C+ C K F S L+ H+R+H GEK
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGP 43
Score = 45.7 bits (109), Expect = 7e-08
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 49 SLHSDVKAFQCEYCGKDFARKYSLVVHRRIHTGERNYQCE 88
S S K+ C+ CGK+F +L +H+R+H GE+
Sbjct: 5 SSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPS 44
Score = 43.7 bits (104), Expect = 4e-07
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGCE 31
CD CGK+F +AL++H RVH+G K G
Sbjct: 15 CDECGKNFCYISALRIHQRVHMGEKCSGPS 44
Score = 41.4 bits (98), Expect = 3e-06
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 103 HRRIHTGEKPHFCPVCNKMFRVRSDMKRHLNTH 135
+GEK H C C K F S ++ H H
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVH 35
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 59.9 bits (146), Expect = 3e-13
Identities = 14/41 (34%), Positives = 18/41 (43%)
Query: 75 HRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFC 115
G Y+C C K+F L H+R+HT EKP
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 49.8 bits (120), Expect = 2e-09
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 49 SLHSDVKAFQCEYCGKDFARKYSLVVHRRIHTGERNYQC 87
S + V ++C C K F+ K L+VH+R+HT E+
Sbjct: 5 SSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 41.0 bits (97), Expect = 5e-06
Identities = 13/29 (44%), Positives = 14/29 (48%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGC 30
C C KSF L VH R+H KP G
Sbjct: 15 CSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 38.3 bits (90), Expect = 4e-05
Identities = 8/33 (24%), Positives = 11/33 (33%)
Query: 103 HRRIHTGEKPHFCPVCNKMFRVRSDMKRHLNTH 135
G P+ C C K F + + H H
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMH 35
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 60.8 bits (147), Expect = 4e-13
Identities = 20/75 (26%), Positives = 30/75 (40%), Gaps = 9/75 (12%)
Query: 50 LHSDVKAFQCEYCGKDFARKYSLVVH-RRIHTGERNYQCEFCH--------KAFRASSYL 100
+ + + C + F+ + LV H H G C+ K+F+A L
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKL 78
Query: 101 QNHRRIHTGEKPHFC 115
NH R+HTGEK
Sbjct: 79 VNHIRVHTGEKSGPS 93
Score = 54.2 bits (130), Expect = 1e-10
Identities = 23/87 (26%), Positives = 32/87 (36%), Gaps = 22/87 (25%)
Query: 2 CDTCGKSFFSSTALKVH-NRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCE 60
+C ++F + L H H+G VC W + C
Sbjct: 28 KKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVC-----YWEE----------------CP 66
Query: 61 YCGKDFARKYSLVVHRRIHTGERNYQC 87
GK F KY LV H R+HTGE++
Sbjct: 67 REGKSFKAKYKLVNHIRVHTGEKSGPS 93
Score = 45.7 bits (108), Expect = 2e-07
Identities = 13/67 (19%), Positives = 21/67 (31%), Gaps = 9/67 (13%)
Query: 78 IHTGERNYQCEFCHKAFRASSYLQNH-RRIHTGEKPHF--------CPVCNKMFRVRSDM 128
I + + + C + F L H H G CP K F+ + +
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKL 78
Query: 129 KRHLNTH 135
H+ H
Sbjct: 79 VNHIRVH 85
Score = 30.3 bits (68), Expect = 0.082
Identities = 5/37 (13%), Positives = 13/37 (35%)
Query: 106 IHTGEKPHFCPVCNKMFRVRSDMKRHLNTHNVDARQY 142
I + C++ F ++ H+ +V +
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQ 55
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 59.2 bits (144), Expect = 6e-13
Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 75 HRRIHTGERNYQCEF--CHKAFRASSYLQNHRRIHTGEKPHFC 115
TGE+ + C + C F S L HRR H+G KP
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGP 45
Score = 43.1 bits (102), Expect = 7e-07
Identities = 14/71 (19%), Positives = 18/71 (25%), Gaps = 27/71 (38%)
Query: 18 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYSLVVHRR 77
G KP+ C CG F+R L HRR
Sbjct: 3 SGSSGTGEKPFACTW---------------------------PGCGWRFSRSDELSRHRR 35
Query: 78 IHTGERNYQCE 88
H+G +
Sbjct: 36 SHSGVKPSGPS 46
Score = 42.3 bits (100), Expect = 2e-06
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 102 NHRRIHTGEKPHFC--PVCNKMFRVRSDMKRHLNTH 135
+ TGEKP C P C F ++ RH +H
Sbjct: 2 SSGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSH 37
Score = 35.0 bits (81), Expect = 9e-04
Identities = 12/27 (44%), Positives = 13/27 (48%)
Query: 5 CGKSFFSSTALKVHNRVHLGLKPYGCE 31
CG F S L H R H G+KP G
Sbjct: 20 CGWRFSRSDELSRHRRSHSGVKPSGPS 46
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 58.7 bits (143), Expect = 8e-13
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 77 RIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFC 115
+GE+ + C C KAF + SYL H++ H EKP
Sbjct: 3 SGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 52.9 bits (128), Expect = 1e-10
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 49 SLHSDVKAFQCEYCGKDFARKYSLVVHRRIHTGERNYQC 87
S S K F C C K F+ K L+VH++ H E+
Sbjct: 3 SGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 42.1 bits (100), Expect = 1e-06
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGC 30
C C K+F S + L VH + H KP G
Sbjct: 13 CSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 35.6 bits (83), Expect = 5e-04
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 105 RIHTGEKPHFCPVCNKMFRVRSDMKRHLNTH 135
+GEKP C C K F +S + H TH
Sbjct: 3 SGSSGEKPFGCSCCEKAFSSKSYLLVHQQTH 33
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 57.2 bits (139), Expect = 3e-12
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 77 RIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPH 113
+G+R Y+C+ C K+FR L H RIHTG P
Sbjct: 3 SGSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPS 39
Score = 45.6 bits (109), Expect = 8e-08
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 48 ASLHSDVKAFQCEYCGKDFARKYSLVVHRRIHTGERNY 85
+S S + ++C+ CGK F +K SL +H RIHTG
Sbjct: 2 SSGSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPS 39
Score = 37.2 bits (87), Expect = 9e-05
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPY 28
C CGKSF +L +H R+H G P
Sbjct: 13 CQECGKSFRQKGSLTLHERIHTGSGPS 39
Score = 33.7 bits (78), Expect = 0.002
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 105 RIHTGEKPHFCPVCNKMFRVRSDMKRHLNTH 135
+G++ + C C K FR + + H H
Sbjct: 3 SGSSGQRVYECQECGKSFRQKGSLTLHERIH 33
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 57.7 bits (139), Expect = 3e-12
Identities = 19/75 (25%), Positives = 30/75 (40%), Gaps = 8/75 (10%)
Query: 11 SSTALKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKY 70
SS + ++HLG + C CG F + S S K CE C KD ++
Sbjct: 2 SSGSSGKRQKIHLGDRSQKCSKCGIIFIR--------RSTLSRRKTPMCEKCRKDSCQEA 53
Query: 71 SLVVHRRIHTGERNY 85
+L +G++
Sbjct: 54 ALNKDEGNESGKKTS 68
Score = 52.4 bits (125), Expect = 5e-10
Identities = 14/73 (19%), Positives = 26/73 (35%), Gaps = 8/73 (10%)
Query: 41 GDLKYHKASLHSDVKAFQCEYCGKDFARKYSLVVHRRIHTGERNYQCEFCHKAFRASSYL 100
G + +H ++ +C CG F R+ + + + CE C K + L
Sbjct: 4 GSSGKRQ-KIHLGDRSQKCSKCGIIFIRRST-------LSRRKTPMCEKCRKDSCQEAAL 55
Query: 101 QNHRRIHTGEKPH 113
+G+K
Sbjct: 56 NKDEGNESGKKTS 68
Score = 47.7 bits (113), Expect = 3e-08
Identities = 13/65 (20%), Positives = 22/65 (33%), Gaps = 7/65 (10%)
Query: 71 SLVVHRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFCPVCNKMFRVRSDMKR 130
S ++IH G+R+ +C C F S + K C C K + + +
Sbjct: 5 SSGKRQKIHLGDRSQKCSKCGIIFIRRST-------LSRRKTPMCEKCRKDSCQEAALNK 57
Query: 131 HLNTH 135
Sbjct: 58 DEGNE 62
Score = 35.8 bits (82), Expect = 6e-04
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 96 ASSYLQNHRRIHTGEKPHFCPVCNKMFRVRSDMKRH 131
+S ++IH G++ C C +F RS + R
Sbjct: 2 SSGSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRR 37
Score = 31.6 bits (71), Expect = 0.027
Identities = 9/29 (31%), Positives = 10/29 (34%)
Query: 1 MCDTCGKSFFSSTALKVHNRVHLGLKPYG 29
MC+ C K AL G K G
Sbjct: 41 MCEKCRKDSCQEAALNKDEGNESGKKTSG 69
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 56.4 bits (137), Expect = 6e-12
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 75 HRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKP 112
T ++Y C C KAF +L H++IHT +
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSG 40
Score = 44.1 bits (105), Expect = 3e-07
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 51 HSDVKAFQCEYCGKDFARKYSLVVHRRIHTGERNYQC 87
+D K++ C CGK F R + L H++IHT +
Sbjct: 7 GTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 40.3 bits (95), Expect = 7e-06
Identities = 9/33 (27%), Positives = 11/33 (33%)
Query: 103 HRRIHTGEKPHFCPVCNKMFRVRSDMKRHLNTH 135
T K + C C K F + RH H
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIH 35
Score = 27.9 bits (63), Expect = 0.23
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGC 30
C+ CGK+F L H ++H
Sbjct: 15 CNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 55.1 bits (132), Expect = 3e-11
Identities = 17/55 (30%), Positives = 24/55 (43%)
Query: 57 FQCEYCGKDFARKYSLVVHRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEK 111
+ CE CG + L H R HT R Y C +C+ +F+ L H + K
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 47.4 bits (112), Expect = 3e-08
Identities = 16/51 (31%), Positives = 27/51 (52%)
Query: 85 YQCEFCHKAFRASSYLQNHRRIHTGEKPHFCPVCNKMFRVRSDMKRHLNTH 135
Y CE C + S L+ H R HT +P+ C CN F+ + ++ +H+ +
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52
Score = 44.7 bits (105), Expect = 3e-07
Identities = 17/49 (34%), Positives = 24/49 (48%)
Query: 1 MCDTCGKSFFSSTALKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKAS 49
+C+ CG + LK H R H ++PY C C F+ G+L H S
Sbjct: 3 ICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS 51
Score = 42.0 bits (98), Expect = 2e-06
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 28 YGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYSLVVHRRIHTGER 83
Y CE CG ++ LK H + H+DV+ + C YC F K +L H + +
Sbjct: 2 YICEECGIRXKKPSMLKKHIRT-HTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Length = 42
Score = 52.7 bits (127), Expect = 1e-10
Identities = 11/39 (28%), Positives = 14/39 (35%)
Query: 75 HRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPH 113
GE Y C C K+F L H+R + P
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPS 40
Score = 43.0 bits (102), Expect = 8e-07
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 51 HSDVKAFQCEYCGKDFARKYSLVVHRRIHTGER 83
+ C CGK F ++ SL VH+R +
Sbjct: 6 SGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSG 38
Score = 36.1 bits (84), Expect = 2e-04
Identities = 11/27 (40%), Positives = 12/27 (44%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPY 28
C CGKSF +L VH R P
Sbjct: 14 CGQCGKSFTQRGSLAVHQRSCSQSGPS 40
Score = 36.1 bits (84), Expect = 3e-04
Identities = 9/34 (26%), Positives = 13/34 (38%)
Query: 103 HRRIHTGEKPHFCPVCNKMFRVRSDMKRHLNTHN 136
GE P+ C C K F R + H + +
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCS 35
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 50.0 bits (120), Expect = 2e-09
Identities = 10/39 (25%), Positives = 19/39 (48%)
Query: 77 RIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFC 115
+GE+ Y C C + F ++ L H+++HT +
Sbjct: 3 SGSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 43.9 bits (104), Expect = 3e-07
Identities = 11/40 (27%), Positives = 19/40 (47%)
Query: 48 ASLHSDVKAFQCEYCGKDFARKYSLVVHRRIHTGERNYQC 87
+S S K + C C + F+ LV H+++HT +
Sbjct: 2 SSGSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 34.6 bits (80), Expect = 0.001
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 105 RIHTGEKPHFCPVCNKMFRVRSDMKRHLNTH 135
+GEKP+ C C + F + + +H H
Sbjct: 3 SGSSGEKPYSCAECKETFSDNNRLVQHQKMH 33
Score = 30.8 bits (70), Expect = 0.025
Identities = 6/29 (20%), Positives = 11/29 (37%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGC 30
C C ++F + L H ++H
Sbjct: 13 CAECKETFSDNNRLVQHQKMHTVKSGPSS 41
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 49.6 bits (118), Expect = 3e-09
Identities = 13/43 (30%), Positives = 19/43 (44%)
Query: 77 RIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFCPVCN 119
+ CE C K FR +L H+ H+GEKP+ +
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSS 47
Score = 44.9 bits (106), Expect = 2e-07
Identities = 15/43 (34%), Positives = 18/43 (41%)
Query: 48 ASLHSDVKAFQCEYCGKDFARKYSLVVHRRIHTGERNYQCEFC 90
S K CE CGK F Y L H+ H+GE+ Y
Sbjct: 4 GSSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 37.2 bits (86), Expect = 1e-04
Identities = 12/32 (37%), Positives = 13/32 (40%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGCEVC 33
C+ CGK F L H H G KPY
Sbjct: 15 CEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 34.5 bits (79), Expect = 0.001
Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 26 KPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYC 62
K CE+CG+ FR L HK S HS K +
Sbjct: 11 KQVACEICGKIFRDVYHLNRHKLS-HSGEKPYSSGPS 46
Score = 33.4 bits (76), Expect = 0.003
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 105 RIHTGEKPHFCPVCNKMFRVRSDMKRHLNTHN 136
K C +C K+FR + RH +H+
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRHKLSHS 36
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 49.1 bits (116), Expect = 2e-08
Identities = 19/91 (20%), Positives = 29/91 (31%), Gaps = 3/91 (3%)
Query: 41 GDLKYHKASLHSDVKAFQCEYCGKDFARKYSLVVHRRIHTGERNYQCEFCHKAFRASSYL 100
G AS + + +QC C + H R+ C +C F +
Sbjct: 1 GSSGSSGASPVENKEVYQCRLCNAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELK 58
Query: 101 QNHRRIHTGEKPHFCPVCNKMFRVRSDMKRH 131
Q H K C C + F+ + RH
Sbjct: 59 QEHES-KCEYKKLTCLECMRTFKSSFSIWRH 88
Score = 41.0 bits (95), Expect = 2e-05
Identities = 15/81 (18%), Positives = 26/81 (32%), Gaps = 4/81 (4%)
Query: 24 GLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYSLVVHRRIHTGER 83
+ Y C +C + H+ + A C YC F L +
Sbjct: 13 NKEVYQCRLCNAKLSSLLEQGSHERLCRN---AAVCPYCSLRFFSP-ELKQEHESKCEYK 68
Query: 84 NYQCEFCHKAFRASSYLQNHR 104
C C + F++S + H+
Sbjct: 69 KLTCLECMRTFKSSFSIWRHQ 89
Score = 38.7 bits (89), Expect = 1e-04
Identities = 15/75 (20%), Positives = 24/75 (32%), Gaps = 4/75 (5%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEY 61
C C S H R+ C C F + H++ + K C
Sbjct: 19 CRLCNAKLSSLLEQGSHERLCRNAAV--CPYCSLRFFSPELKQEHES--KCEYKKLTCLE 74
Query: 62 CGKDFARKYSLVVHR 76
C + F +S+ H+
Sbjct: 75 CMRTFKSSFSIWRHQ 89
Score = 33.7 bits (76), Expect = 0.008
Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
Query: 1 MCDTCGKSFFSSTALKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHS 52
+C C FFS + H K C C R F+ + H+ +H+
Sbjct: 44 VCPYCSLRFFSPELKQEH-ESKCEYKKLTCLECMRTFKSSFSIWRHQVEVHN 94
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 47.5 bits (113), Expect = 2e-08
Identities = 10/39 (25%), Positives = 15/39 (38%)
Query: 75 HRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPH 113
GE ++C C + F +YL H R H +
Sbjct: 3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSGP 41
Score = 39.1 bits (91), Expect = 2e-05
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 51 HSDVKAFQCEYCGKDFARKYSLVVHRRIHTGER 83
+ F+C C + F ++ LV H R H +
Sbjct: 7 GAGENPFKCSKCDRVFTQRNYLVQHERTHARKS 39
Score = 33.3 bits (76), Expect = 0.003
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 102 NHRRIHTGEKPHFCPVCNKMFRVRSDMKRHLNTH 135
+ GE P C C+++F R+ + +H TH
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTH 35
Score = 26.7 bits (59), Expect = 0.80
Identities = 7/28 (25%), Positives = 8/28 (28%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYG 29
C C + F L H R H
Sbjct: 15 CSKCDRVFTQRNYLVQHERTHARKSGPS 42
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 48.8 bits (115), Expect = 4e-08
Identities = 24/126 (19%), Positives = 39/126 (30%), Gaps = 8/126 (6%)
Query: 13 TALKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYSL 72
+ K + H G+ V +++ L + L + + S
Sbjct: 8 SGSKKYLSNHKGI---FIHVTLEELKRYHQLTPEQKRLIRAIVKTLI--HNPQLLDESSY 62
Query: 73 VVHRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFCPVCNKMFRVRSDMKRHL 132
+ + C C F +S L+ H R K CPVC K F H+
Sbjct: 63 LYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYTEHTKV--CPVCKKEFTSTDSALDHV 120
Query: 133 -NTHNV 137
HN+
Sbjct: 121 CKKHNI 126
Score = 40.3 bits (93), Expect = 5e-05
Identities = 13/78 (16%), Positives = 22/78 (28%), Gaps = 4/78 (5%)
Query: 5 CGKSFFSSTALKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGK 64
++ + + C +C F LK H + C C K
Sbjct: 52 HNPQLLDESSYLYRLLASKAISQFVCPLCLMPFSSSVSLKQH---IRYTEHTKVCPVCKK 108
Query: 65 DFARKYSLVVH-RRIHTG 81
+F S + H + H
Sbjct: 109 EFTSTDSALDHVCKKHNI 126
Score = 37.6 bits (86), Expect = 4e-04
Identities = 15/52 (28%), Positives = 19/52 (36%), Gaps = 2/52 (3%)
Query: 1 MCDTCGKSFFSSTALKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHS 52
+C C F SS +LK H R C VC + F H H+
Sbjct: 76 VCPLCLMPFSSSVSLKQHIRYT--EHTKVCPVCKKEFTSTDSALDHVCKKHN 125
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 43.5 bits (103), Expect = 4e-07
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 75 HRRIHTGERNYQCEFCHKAFRASSYLQNHRRIH 107
R TG + +QC C ++F S +L HR+ H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 39.2 bits (92), Expect = 2e-05
Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
Query: 103 HRRIHTGEKPHFCPVCNKMFRVRSDMKRHLNTH 135
R TG KP CP C++ F RSD HL H
Sbjct: 2 STRGSTGIKPFQCPDCDRSF-SRSD---HLALH 30
Score = 32.7 bits (75), Expect = 0.004
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 51 HSDVKAFQCEYCGKDFARKYSLVVHRRIH 79
+ +K FQC C + F+R L +HR+ H
Sbjct: 6 STGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 31.5 bits (72), Expect = 0.009
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 18 HNRVHLGLKPYGCEVCGRHFRQWGDLKYH 46
R G+KP+ C C R F + L H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALH 30
Score = 25.8 bits (57), Expect = 1.3
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 2 CDTCGKSFFSSTALKVHNRVHL 23
C C +SF S L +H + H+
Sbjct: 14 CPDCDRSFSRSDHLALHRKRHM 35
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 39.4 bits (91), Expect = 2e-05
Identities = 18/32 (56%), Positives = 20/32 (62%)
Query: 52 SDVKAFQCEYCGKDFARKYSLVVHRRIHTGER 83
S K F CEYC K F K+SL H RIHT E+
Sbjct: 5 SSGKIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
Score = 34.8 bits (79), Expect = 7e-04
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 83 RNYQCEFCHKAFRASSYLQNHRRIHTGEK 111
+ + CE+C+K F+ LQ H RIHT EK
Sbjct: 8 KIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 40.1 bits (93), Expect = 3e-05
Identities = 16/81 (19%), Positives = 27/81 (33%), Gaps = 4/81 (4%)
Query: 11 SSTALKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKA---FQCEYCGKDFA 67
+ + + Y C+ C +H S H +V + C C
Sbjct: 2 AHHHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTK 61
Query: 68 RKYSLVVH-RRIHTGERNYQC 87
R +L H + H GE N++
Sbjct: 62 RYDALSEHNLKYHPGEENFKL 82
Score = 29.7 bits (66), Expect = 0.20
Identities = 14/72 (19%), Positives = 22/72 (30%), Gaps = 5/72 (6%)
Query: 46 HKASLHSDVKAFQCEYCGKDFARKYSLVVH-RRIHTGER---NYQCEFCHKAFRASSYLQ 101
H ++C+YC H H +Y C C+ + L
Sbjct: 8 HNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALS 67
Query: 102 NH-RRIHTGEKP 112
H + H GE+
Sbjct: 68 EHNLKYHPGEEN 79
Score = 27.4 bits (60), Expect = 0.99
Identities = 10/65 (15%), Positives = 21/65 (32%), Gaps = 4/65 (6%)
Query: 71 SLVVHRRIHTGERNYQCEFCHKAFRASSYLQNH-RRIHTG---EKPHFCPVCNKMFRVRS 126
+++ E Y+C++C + H H + C CN + +
Sbjct: 5 HHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYD 64
Query: 127 DMKRH 131
+ H
Sbjct: 65 ALSEH 69
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 41.8 bits (97), Expect = 4e-05
Identities = 9/54 (16%), Positives = 15/54 (27%)
Query: 54 VKAFQCEYCGKDFARKYSLVVHRRIHTGERNYQCEFCHKAFRASSYLQNHRRIH 107
+ E ++ + V + YQC C + L H H
Sbjct: 150 MSTRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
Score = 39.5 bits (91), Expect = 3e-04
Identities = 9/46 (19%), Positives = 18/46 (39%)
Query: 105 RIHTGEKPHFCPVCNKMFRVRSDMKRHLNTHNVDARQYLTVTGSQT 150
+ + C VC+ + D+ H+ +H + LT + Q
Sbjct: 173 PTASSGHGYQCHVCSAVLFSPLDLDAHVASHGLHGNMTLTSSEIQR 218
Score = 37.1 bits (85), Expect = 0.002
Identities = 7/33 (21%), Positives = 8/33 (24%)
Query: 47 KASLHSDVKAFQCEYCGKDFARKYSLVVHRRIH 79
S +QC C L H H
Sbjct: 171 LPPTASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
Score = 35.6 bits (81), Expect = 0.006
Identities = 11/56 (19%), Positives = 13/56 (23%), Gaps = 1/56 (1%)
Query: 1 MCDTCGKSFFSSTALKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKA 56
+ + A Y C VC DL H AS H
Sbjct: 154 IAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVAS-HGLHGN 208
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens}
SCOP: g.37.1.1 PDB: 1va2_A
Length = 31
Score = 36.0 bits (84), Expect = 2e-04
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 83 RNYQC--EFCHKAFRASSYLQNHRRIHTGEK 111
R + C +C K F S LQ H+R HTGEK
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 35.7 bits (83), Expect = 3e-04
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 55 KAFQC--EYCGKDFARKYSLVVHRRIHTGER 83
+ F C YCGK F R L H+R HTGE+
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 25.3 bits (56), Expect = 2.0
Identities = 11/24 (45%), Positives = 12/24 (50%)
Query: 3 DTCGKSFFSSTALKVHNRVHLGLK 26
CGK F S L+ H R H G K
Sbjct: 8 SYCGKRFTRSDELQRHKRTHTGEK 31
Score = 24.1 bits (53), Expect = 4.3
Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 4/28 (14%)
Query: 111 KPHFCPV--CNKMFRVRSD-MKRHLNTH 135
+P C C K F RSD ++RH TH
Sbjct: 1 RPFMCTWSYCGKRFT-RSDELQRHKRTH 27
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding
protein; NMR {Homo sapiens}
Length = 37
Score = 35.8 bits (83), Expect = 3e-04
Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 80 TGERNYQCEF--CHKAFRASSYLQNHRRIHTGEK 111
++ + C C K + +S+L+ H R HTGE+
Sbjct: 4 GKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
Score = 30.8 bits (70), Expect = 0.021
Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 55 KAFQCEY--CGKDFARKYSLVVHRRIHTGER 83
K C CGK + + L H R HTGER
Sbjct: 7 KQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
Score = 26.9 bits (60), Expect = 0.51
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 5 CGKSFFSSTALKVHNRVHLGLK 26
CGK + ++ L+ H R H G +
Sbjct: 16 CGKVYGKTSHLRAHLRWHTGER 37
Score = 26.5 bits (59), Expect = 0.76
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 108 TGEKPHFCPV--CNKMFRVRSDMKRHLNTH 135
+K H C + C K++ S ++ HL H
Sbjct: 4 GKKKQHICHIQGCGKVYGKTSHLRAHLRWH 33
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 34.6 bits (80), Expect = 8e-04
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 83 RNYQCEFCHKAFRASSYLQNHRRIHTGEK 111
R++ CE C +AF +L+ H R HT EK
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 33.8 bits (78), Expect = 0.001
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 55 KAFQCEYCGKDFARKYSLVVHRRIHTGER 83
++F CE C + FAR+ L H R HT E+
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 30.0 bits (68), Expect = 0.030
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 111 KPHFCPVCNKMFRVRSDMKRHLNTH 135
+ C VC + F + +KRH +H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSH 25
Score = 24.2 bits (53), Expect = 3.9
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 26 KPYGCEVCGRHFRQWGDLKYH 46
+ + CEVC R F + LK H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRH 21
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
classical zinc finger, transcription; NMR {Homo sapiens}
Length = 30
Score = 34.0 bits (77), Expect = 0.001
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 83 RNYQCEFCHKAFRASSYLQNHRRIHTGEK 111
+ Y C C + F LQ H RIHTGEK
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGEK 30
Score = 29.7 bits (66), Expect = 0.043
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 54 VKAFQCEYCGKDFARKYSLVVHRRIHTGER 83
+K + C +C + FA +L H RIHTGE+
Sbjct: 1 MKPYVCIHCQRQFADPGALQRHVRIHTGEK 30
Score = 23.2 bits (49), Expect = 9.8
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 111 KPHFCPVCNKMFRVRSDMKRHLNTH 135
KP+ C C + F ++RH+ H
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIH 26
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif,
transcription regulation, zinc-finger; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 47
Score = 33.7 bits (77), Expect = 0.002
Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 55 KAFQCEY--CGKDFARKYSLVVHRRIHTGER 83
K F+C + C K F R+Y++ H + H +R
Sbjct: 17 KTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
Score = 25.6 bits (56), Expect = 2.0
Identities = 7/32 (21%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 82 ERNYQCEF--CHKAFRASSYLQNHRRIHTGEK 111
++ ++C F C K F+ +++H + H ++
Sbjct: 16 DKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
Score = 25.2 bits (55), Expect = 2.8
Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 110 EKPHFCPV--CNKMFRVRSDMKRHLNTHNVD 138
+K C C K F+ R +++ H+ TH D
Sbjct: 16 DKTFECLFPGCTKTFKRRYNIRSHIQTHLED 46
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 33.6 bits (76), Expect = 0.003
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 79 HTGERNYQCEFCHKAFRASSYLQNHRRIHT 108
E+ ++C C K F S YL H RIHT
Sbjct: 7 GQKEKCFKCNKCEKTFSCSKYLTQHERIHT 36
Score = 26.3 bits (57), Expect = 1.0
Identities = 13/33 (39%), Positives = 15/33 (45%)
Query: 48 ASLHSDVKAFQCEYCGKDFARKYSLVVHRRIHT 80
S K F+C C K F+ L H RIHT
Sbjct: 4 GSSGQKEKCFKCNKCEKTFSCSKYLTQHERIHT 36
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 32.9 bits (74), Expect = 0.004
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 57 FQCEYCGKDFARKYSLVVHRRIHTGE 82
+C+ CGK F L+ H+ +H GE
Sbjct: 13 SECQECGKIFRHSSLLIEHQALHAGE 38
Score = 31.0 bits (69), Expect = 0.020
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 81 GERNYQCEFCHKAFRASSYLQNHRRIHTGE 110
+ +C+ C K FR SS L H+ +H GE
Sbjct: 9 AKTTSECQECGKIFRHSSLLIEHQALHAGE 38
Score = 24.1 bits (51), Expect = 7.6
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLG 24
C CGK F S+ L H +H G
Sbjct: 15 CQECGKIFRHSSLLIEHQALHAG 37
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 75
Score = 33.4 bits (76), Expect = 0.005
Identities = 13/66 (19%), Positives = 20/66 (30%), Gaps = 3/66 (4%)
Query: 71 SLVVHRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFCPVCNKMFRVRSDMKR 130
H R C+ C L+ H + G + C C + V+ D+K
Sbjct: 4 GSSGHEETECPLRLAVCQHCDLELSILK-LKEHED-YCGARTELCGNCGRNVLVK-DLKT 60
Query: 131 HLNTHN 136
H
Sbjct: 61 HPEVCG 66
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 35.2 bits (80), Expect = 0.006
Identities = 9/53 (16%), Positives = 16/53 (30%)
Query: 59 CEYCGKDFARKYSLVVHRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEK 111
E K +HR + GE+ Q E + L+ + +
Sbjct: 183 SEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLSVLRQ 235
Score = 33.3 bits (75), Expect = 0.022
Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 2/62 (3%)
Query: 76 RRIHTGE--RNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFCPVCNKMFRVRSDMKRHLN 133
R I GE R + E K + S HR + GEK ++ D++ ++
Sbjct: 170 RDIRPGEWLRVWYSEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIH 229
Query: 134 TH 135
Sbjct: 230 LS 231
Score = 27.1 bits (59), Expect = 3.2
Identities = 8/59 (13%), Positives = 16/59 (27%), Gaps = 1/59 (1%)
Query: 25 LKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYSLVVHRRIHTGER 83
L+ + E + H+ +L K Q E + L + +
Sbjct: 178 LRVWYSEDYMKRLHSMSQETIHR-NLARGEKRLQREKSEQVLDNPEDLRGPIHLSVLRQ 235
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 31.8 bits (71), Expect = 0.011
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 107 HTGEKPHFCPVCNKMFRVRSDMKRHLNTHN 136
+GEKP+ CPVC F+ + M H+ +H+
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHD 34
Score = 30.7 bits (68), Expect = 0.026
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 79 HTGERNYQCEFCHKAFRASSYLQNHRRIHTG 109
+GE+ Y C C F+ + H R H G
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
Score = 29.9 bits (66), Expect = 0.050
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 48 ASLHSDVKAFQCEYCGKDFARKYSLVVHRRIHTG 81
+S S K + C CG F RK + H R H G
Sbjct: 2 SSGSSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
Score = 24.9 bits (53), Expect = 4.1
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 22 HLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDV 54
G KPY C VCG F++ + YH S V
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSV 37
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 31.3 bits (70), Expect = 0.018
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 55 KAFQCEYCGKDFARKYSLVVHRRIHTGERN 84
K+ QC CG+ F + SL+ H+ +H G++N
Sbjct: 11 KSHQCRECGEIFFQYVSLIEHQVLHMGQKN 40
Score = 29.4 bits (65), Expect = 0.072
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 80 TGERNYQCEFCHKAFRASSYLQNHRRIHTGEK 111
+ E+++QC C + F L H+ +H G+K
Sbjct: 8 SREKSHQCRECGEIFFQYVSLIEHQVLHMGQK 39
Score = 25.2 bits (54), Expect = 3.2
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 26 KPYGCEVCGRHFRQWGDLKYHK 47
K + C CG F Q+ L H+
Sbjct: 11 KSHQCRECGEIFFQYVSLIEHQ 32
Score = 23.6 bits (50), Expect = 9.6
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLK 26
C CG+ FF +L H +H+G K
Sbjct: 15 CRECGEIFFQYVSLIEHQVLHMGQK 39
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription;
NMR {Mus musculus} SCOP: g.37.1.1
Length = 35
Score = 30.5 bits (68), Expect = 0.027
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 107 HTGEKPHFCPVCNKMFRVRSDMKRHLNTH 135
+G++P C +C F +++ RHL H
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVH 30
Score = 30.1 bits (67), Expect = 0.040
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 79 HTGERNYQCEFCHKAFRASSYLQNHRRIHT 108
+G+R + C C AF + H ++HT
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHT 31
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC),
C2H2, APO metal-binding, nucleus, phosphoprotein,
transcription, TRAN regulation; 1.80A {Homo sapiens}
Length = 48
Score = 30.5 bits (68), Expect = 0.029
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 26 KPYGCEVCGRHFRQWGDLKYHKASLHSD 53
KPY C++CG+ ++ L YH A H
Sbjct: 6 KPYACDICGKRYKNRPGLSYHYAHSHLA 33
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc
finger, transcription; NMR {Homo sapiens}
Length = 29
Score = 30.1 bits (67), Expect = 0.035
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 55 KAFQCEYCGKDFARKYSLVVHRRIHTGER 83
K QC CGK F + SL+ H R HTGE+
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29
Score = 27.4 bits (60), Expect = 0.35
Identities = 15/26 (57%), Positives = 16/26 (61%)
Query: 86 QCEFCHKAFRASSYLQNHRRIHTGEK 111
QC C KAF +S L H R HTGEK
Sbjct: 4 QCVMCGKAFTQASSLIAHVRQHTGEK 29
Score = 23.6 bits (50), Expect = 6.6
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 1 MCDTCGKSFFSSTALKVHNRVHLGLK 26
C CGK+F +++L H R H G K
Sbjct: 4 QCVMCGKAFTQASSLIAHVRQHTGEK 29
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 31.1 bits (69), Expect = 0.059
Identities = 14/51 (27%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
Query: 26 KPYGCEVCGRHFRQ-WGDLKYHKASLHSDVKAFQCEYCGKDFARKYSLVVH 75
C C R+ LK H A +C++C K F K L H
Sbjct: 23 GEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYH 73
Score = 28.4 bits (62), Expect = 0.57
Identities = 15/53 (28%), Positives = 20/53 (37%), Gaps = 2/53 (3%)
Query: 2 CDTCGKSFFSSTA-LKVHNRV-HLGLKPYGCEVCGRHFRQWGDLKYHKASLHS 52
C TC + LK H V C+ C + F+ L YH + HS
Sbjct: 27 CPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHS 79
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 29.4 bits (65), Expect = 0.073
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 55 KAFQCEYCGKDFARKYSLVVHRRIHTGER 83
K ++C C A K +L VH R HTGE+
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLRKHTGEK 36
Score = 23.3 bits (49), Expect = 9.7
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 85 YQCEFCHKAFRASSYLQNHRRIHTGEK 111
Y+C C A + L H R HTGEK
Sbjct: 10 YKCPQCSYASAIKANLNVHLRKHTGEK 36
>4dgw_A PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 402
Score = 31.4 bits (70), Expect = 0.12
Identities = 17/76 (22%), Positives = 31/76 (40%), Gaps = 11/76 (14%)
Query: 59 CEYCGKDFARKYSLVVHRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFCPVC 118
+Y F + Y+L+ + E + +F H R S + + K +CP C
Sbjct: 250 SKYVETFFFKSYALLDAAAV---ENLIKSDFEHSYCRGS--------LRSEAKGIYCPFC 298
Query: 119 NKMFRVRSDMKRHLNT 134
++ F+ S + HL
Sbjct: 299 SRWFKTSSVFESHLVG 314
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 28
Score = 28.2 bits (62), Expect = 0.14
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 54 VKAFQCEYCGKDFARKYSLVVHRRIHTG 81
++ + C CGK F+ K+ + H R+HTG
Sbjct: 1 MRPYSCSVCGKRFSLKHQMETHYRVHTG 28
Score = 24.8 bits (53), Expect = 2.4
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 111 KPHFCPVCNKMFRVRSDMKRHLNTH 135
+P+ C VC K F ++ M+ H H
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVH 26
Score = 24.4 bits (52), Expect = 3.7
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 83 RNYQCEFCHKAFRASSYLQNHRRIHTG 109
R Y C C K F ++ H R+HTG
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVHTG 28
>3iyl_X VP3; non-enveloped virus, membrane penetration protein, autocleav
myristol group, icosahedral virus; HET: MYR; 3.30A
{Grass carp reovirus} PDB: 3k1q_C 3k1q_B
Length = 1214
Score = 31.3 bits (70), Expect = 0.15
Identities = 10/31 (32%), Positives = 11/31 (35%)
Query: 26 KPYGCEVCGRHFRQWGDLKYHKASLHSDVKA 56
Y C VC F L H S H D +
Sbjct: 115 SSYVCNVCNARFSTMSALSEHLRSDHRDDAS 145
Score = 30.2 bits (67), Expect = 0.34
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 1 MCDTCGKSFFSSTALKVHNR 20
+C+ C F + +AL H R
Sbjct: 118 VCNVCNARFSTMSALSEHLR 137
Score = 30.2 bits (67), Expect = 0.36
Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 111 KPHFCPVCNKMFRVRSDMKRHL-NTHNVDARQYLT 144
+ C VCN F S + HL + H DA L
Sbjct: 115 SSYVCNVCNARFSTMSALSEHLRSDHRDDASTLLA 149
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.2 bits (70), Expect = 0.16
Identities = 24/146 (16%), Positives = 44/146 (30%), Gaps = 45/146 (30%)
Query: 30 CEVCGRHFRQWGDLKYHKASL--HS-DV---KAFQCEYCGKDFARKYSLVVHRRIHTGER 83
++ G G+L+ + HS + A + F + G R
Sbjct: 253 AKLLGFTP---GELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVR 309
Query: 84 NYQCEFCHKAFR----ASSYLQNHRRIHTGEK-PHFCPVCNKMFRVRS-------DMKRH 131
C++A+ S L++ + E P P M + + D
Sbjct: 310 ------CYEAYPNTSLPPSILEDS--LENNEGVP--SP----MLSISNLTQEQVQDYVNK 355
Query: 132 LNTH----------NVDARQYLTVTG 147
N+H V+ + L V+G
Sbjct: 356 TNSHLPAGKQVEISLVNGAKNLVVSG 381
Score = 28.5 bits (63), Expect = 1.2
Identities = 18/96 (18%), Positives = 27/96 (28%), Gaps = 33/96 (34%)
Query: 70 YSLVVH-RRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPH----FCPV-----CN 119
Y L + R+ +A S L R + K F PV +
Sbjct: 387 YGLNLTLRKA----------------KAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSH 430
Query: 120 KMFRVRSDMKRHLNTHNVDARQ-------YLTVTGS 148
+ + + L +NV Y T GS
Sbjct: 431 LLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGS 466
>3ov0_A Cytochrome C family protein; multiheme cytochrome C, electron
transfer, Fe reduction, GEO sulfurreducens; HET: HEM;
3.20A {Geobacter sulfurreducens}
Length = 318
Score = 30.8 bits (67), Expect = 0.21
Identities = 21/135 (15%), Positives = 35/135 (25%), Gaps = 5/135 (3%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEY 61
C C + T + H G+ P S + ++C
Sbjct: 138 CGACHNDKMAFTVAGNCGKCHKGMTPPKTVNFKMKGV-----ADAAFSHEFHLGMYKCNE 192
Query: 62 CGKDFARKYSLVVHRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFCPVCNKM 121
C + + ++ C CH A S + + H G KP +
Sbjct: 193 CHTKLFAYKAGAKRFTMADMDKGKSCGACHNGKDAFSSASDCGKCHPGLKPAKLTYKTSV 252
Query: 122 FRVRSDMKRHLNTHN 136
D HL+
Sbjct: 253 GEAYFDHDIHLSMFK 267
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA
motif, metal binding protein; NMR {Synthetic} SCOP:
g.37.1.3 PDB: 2l1o_A
Length = 39
Score = 27.8 bits (62), Expect = 0.25
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 83 RNYQCEFCHKAFRASSYLQNHRRIHTGEK 111
R+Y C FC + FR++ L H +H ++
Sbjct: 5 RSYTCSFCKREFRSAQALGGHMNVHRRDR 33
Score = 25.9 bits (57), Expect = 1.1
Identities = 7/30 (23%), Positives = 16/30 (53%)
Query: 55 KAFQCEYCGKDFARKYSLVVHRRIHTGERN 84
+++ C +C ++F +L H +H +R
Sbjct: 5 RSYTCSFCKREFRSAQALGGHMNVHRRDRA 34
Score = 24.3 bits (53), Expect = 5.1
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 2 CDTCGKSFFSSTALKVHNRVH 22
C C + F S+ AL H VH
Sbjct: 9 CSFCKREFRSAQALGGHMNVH 29
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 29.1 bits (64), Expect = 0.30
Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
Query: 2 CDTCGKSFFSSTA-LKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAF 57
C TC + LK H + + C CG+ R +KYH + H+ + +
Sbjct: 37 CPTCQAVGRKTIEGLKKHMENC-KQEMFTCHHCGKQLRSLAGMKYHVMANHNSLPSG 92
>3oue_A Cytochrome C family protein; multiheme cytochrome-C, electron
transfer, Fe reduction, GEO sulfurreducens, cytochrome
C7 (C3) fold; HET: HEM; 2.15A {Geobacter sulfurreducens}
Length = 158
Score = 29.1 bits (64), Expect = 0.42
Identities = 14/80 (17%), Positives = 25/80 (31%)
Query: 54 VKAFQCEYCGKDFARKYSLVVHRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPH 113
+ ++C C + + ++ C CH A S + + H G KP
Sbjct: 25 LGMYKCNECHTKLFAYKAGAKRFTMADMDKGKSCGACHNGKDAFSSASDCGKCHPGLKPA 84
Query: 114 FCPVCNKMFRVRSDMKRHLN 133
+ D HL+
Sbjct: 85 KLTYKTSVGEAYFDHDIHLS 104
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 26.7 bits (58), Expect = 0.72
Identities = 8/29 (27%), Positives = 18/29 (62%)
Query: 82 ERNYQCEFCHKAFRASSYLQNHRRIHTGE 110
+ + C+ C K F++ L++H+ +HT +
Sbjct: 7 GKTHLCDMCGKKFKSKGTLKSHKLLHTAD 35
Score = 25.2 bits (54), Expect = 2.2
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 55 KAFQCEYCGKDFARKYSLVVHRRIHTGE 82
K C+ CGK F K +L H+ +HT +
Sbjct: 8 KTHLCDMCGKKFKSKGTLKSHKLLHTAD 35
Score = 24.8 bits (53), Expect = 2.9
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 110 EKPHFCPVCNKMFRVRSDMKRHLNTHNVDA 139
K H C +C K F+ + +K H H D
Sbjct: 7 GKTHLCDMCGKKFKSKGTLKSHKLLHTADG 36
Score = 24.8 bits (53), Expect = 3.5
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 1 MCDTCGKSFFSSTALKVHNRVH 22
+CD CGK F S LK H +H
Sbjct: 11 LCDMCGKKFKSKGTLKSHKLLH 32
>2uw1_A Desaturase, plastid delta4 multifunctional acyl-ACYL carrier
desaturase; electron transfer, oxidoreductase, lipid
synthesis, fatty AC biosynthesis; HET: GVM; 1.95A
{Hedera helix} PDB: 2uw1_B* 1oq4_A 1oq7_A 1oq9_A 1oqb_A
2xz0_A* 2xz1_A* 1afr_A 2j2f_A
Length = 338
Score = 28.6 bits (63), Expect = 1.2
Identities = 12/91 (13%), Positives = 27/91 (29%), Gaps = 2/91 (2%)
Query: 68 RKYSLVVHRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFCPVCNKMFR-VRS 126
+Y + I + Y F + +F+ + +H + + + + S
Sbjct: 144 IQYLIGSGMDIKSENSPYLG-FIYTSFQERATFISHANTAKLAQHYGDKKLAHICGSIAS 202
Query: 127 DMKRHLNTHNVDARQYLTVTGSQTGAPIKKE 157
D KRH + + + T
Sbjct: 203 DEKRHATAYTKIVEKLAEIDPDTTVIAFADM 233
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 26.0 bits (56), Expect = 1.3
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 111 KPHFCPVCNKMFRVRSDMKRHLNTHNVD 138
KP C +C R +S++K H+N H+ +
Sbjct: 8 KPFKCSLCEYATRSKSNLKAHMNRHSTE 35
>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin
remodeling, DNA binding protein/DNA complex; HET: DNA;
NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB:
1yuj_A*
Length = 54
Score = 26.0 bits (56), Expect = 1.9
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 110 EKPHFCPVCNKMFRVRSDMKRHL 132
E+P CP+C + R +++RHL
Sbjct: 22 EQPATCPICYAVIRQSRNLRRHL 44
>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein,
C2H2 type zinc-finger, structural genomics; NMR {Mus
musculus} SCOP: g.37.1.2 g.37.1.2
Length = 79
Score = 26.4 bits (58), Expect = 1.9
Identities = 12/47 (25%), Positives = 17/47 (36%), Gaps = 2/47 (4%)
Query: 57 FQCEYCGKDFARKYSLVVHRRIHTGERNYQCEFCHKAFRASSYLQNH 103
F C CG + +K + H C C K F Y ++H
Sbjct: 11 FTCNACG-ESVKKIQVEKHVSNCRNCECLSCIDCGKDFWGDDY-KSH 55
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 30
Score = 25.2 bits (55), Expect = 2.1
Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 55 KAFQCEYCGKDFARKYSLVVH-RRIHTG 81
KA+ C C + F R+ L+ H ++IH+G
Sbjct: 1 KAYACGLCNRAFTRRDLLIRHAQKIHSG 28
Score = 24.4 bits (53), Expect = 3.3
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 26 KPYGCEVCGRHFRQWGDLKYHKASLHS 52
K Y C +C R F + L H +HS
Sbjct: 1 KAYACGLCNRAFTRRDLLIRHAQKIHS 27
>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 66
Score = 26.0 bits (56), Expect = 2.1
Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 5/49 (10%)
Query: 115 CPVCNKMFRVRSDMKRHLNTHNVDARQYLTVTGSQ-----TGAPIKKEP 158
C +C K+F + +++H H V + Q + G PI
Sbjct: 16 CGLCGKVFTDANRLRQHEAQHGVTSLQLGYIDLPPPRLGENGLPISGPS 64
>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein,
helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis}
SCOP: g.37.1.4 g.37.1.4
Length = 127
Score = 26.8 bits (58), Expect = 2.1
Identities = 11/57 (19%), Positives = 18/57 (31%), Gaps = 2/57 (3%)
Query: 111 KPHFCPVCNKMFRVRSDMKRHLNT--HNVDARQYLTVTGSQTGAPIKKEPKQECNGD 165
C VC+ + S H + H R+Y+ + + P KK
Sbjct: 31 SDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAPAEIS 87
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron
transfer, DIIR center, oxidoreductase; 1.40A
{Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1
PDB: 1yv1_A 1yux_A
Length = 202
Score = 27.4 bits (60), Expect = 2.4
Identities = 10/45 (22%), Positives = 14/45 (31%), Gaps = 13/45 (28%)
Query: 75 HRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFCPVCN 119
++ + C C Y IH GE CP+C
Sbjct: 162 DIDAPDDDKFHLCPIC-------GY------IHKGEDFEKCPICF 193
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 32
Score = 24.6 bits (53), Expect = 3.6
Identities = 8/28 (28%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 55 KAFQCEY--CGKDFARKYSLVVHRRIHT 80
+ + C++ C K F R + L+ H++ H
Sbjct: 2 RPYSCDHPGCDKAFVRNHDLIRHKKSHQ 29
Score = 24.2 bits (52), Expect = 4.4
Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 110 EKPHFC--PVCNKMFRVRSDMKRHLNTH 135
++P+ C P C+K F D+ RH +H
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSH 28
Score = 23.4 bits (50), Expect = 10.0
Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 82 ERNYQCEF--CHKAFRASSYLQNHRRIHT 108
+R Y C+ C KAF + L H++ H
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQ 29
>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 66
Score = 25.3 bits (55), Expect = 3.6
Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 3/55 (5%)
Query: 82 ERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFCP-VCNKMFRVRSDMKRHLNTH 135
+R C +C K F + +Q+H+ P CP C R D+ HL
Sbjct: 8 KRTQPCTYCTKEFVFDT-IQSHQY-QCPRLPVACPNQCGVGTVAREDLPGHLKDS 60
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon,
coiled post-transcriptional, gene regulation, chaperone;
HET: EPE; 2.20A {Helicobacter pylori}
Length = 256
Score = 26.6 bits (58), Expect = 3.8
Identities = 10/70 (14%), Positives = 18/70 (25%), Gaps = 7/70 (10%)
Query: 55 KAFQCEYCGKDFARKYSLVVHRRIHTGE---RNYQCEFCHKAFRASSYLQNHRRIHTGEK 111
K E Y + +T + C C + + + T
Sbjct: 166 KEDLVEKTEPKIYSFYERIRRWAKNTSIVTIKKQACGGCFIRLND----KIYTEVLTSGD 221
Query: 112 PHFCPVCNKM 121
CP C ++
Sbjct: 222 MITCPYCGRI 231
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR
{Xenopus laevis} SCOP: g.37.1.1
Length = 27
Score = 24.0 bits (51), Expect = 5.5
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 85 YQCEFCHKAFRASSYLQNHRRIH 107
Y+C C ++F S L H+R+H
Sbjct: 2 YKCGLCERSFVEKSALSRHQRVH 24
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR),
beta-hairpin, alpha-solenoi transport protein; 2.60A
{Bos taurus}
Length = 320
Score = 26.2 bits (57), Expect = 6.0
Identities = 8/45 (17%), Positives = 13/45 (28%), Gaps = 12/45 (26%)
Query: 75 HRRIHTGERNYQCEFCHKAFRASSYLQNHRRIHTGEKPHFCPVCN 119
+R I+ G+ +C + Y K C V
Sbjct: 269 YRPIYRGKPVEKCPLSG-----ACYSPEF-------KGQICKVTT 301
>3llk_A Sulfhydryl oxidase 1; disulfide, flavin adenine dinucleotide,
alternative splicing, FAD, flavoprotein, glycoprotein,
GOLG apparatus, membrane; HET: FAD FLC; 2.00A {Homo
sapiens} PDB: 3lli_A*
Length = 261
Score = 26.2 bits (57), Expect = 6.4
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 28 YGCEVCGRHFRQW 40
+GC C HF Q
Sbjct: 162 FGCRDCASHFEQM 174
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 27
Score = 23.6 bits (50), Expect = 8.2
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 110 EKPHFCPVCNKMFRVRSDMKRHLNTH 135
EKP C +C + R S M +HL TH
Sbjct: 1 EKPFSCSLCPQRSRDFSAMTKHLRTH 26
>2ecv_A Tripartite motif-containing protein 5; metal binding protein,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 85
Score = 24.5 bits (54), Expect = 8.4
Identities = 6/26 (23%), Positives = 12/26 (46%)
Query: 101 QNHRRIHTGEKPHFCPVCNKMFRVRS 126
NH++ + CPVC ++ +
Sbjct: 48 ANHKKSMLDKGESSCPVCRISYQPEN 73
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress,
oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A
3pza_A 3qvd_A 1nnq_A 2hr5_A
Length = 170
Score = 25.4 bits (55), Expect = 8.5
Identities = 6/14 (42%), Positives = 7/14 (50%)
Query: 106 IHTGEKPHFCPVCN 119
E P +CPVC
Sbjct: 147 TAVDEAPEYCPVCG 160
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Length = 29
Score = 23.3 bits (50), Expect = 8.5
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 85 YQCEFCHKAFRASSYLQNHRRIHTGEK 111
+ C C K F S +L H +H +K
Sbjct: 3 FACPECPKRFMRSDHLTLHILLHENKK 29
>2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta;
zinc ribbon, crotonase superfamily, spiral domain;
1.98A {Staphylococcus aureus}
Length = 285
Score = 25.6 bits (57), Expect = 8.5
Identities = 8/37 (21%), Positives = 11/37 (29%), Gaps = 9/37 (24%)
Query: 2 CDTCGKSFFSSTALKVHNRVHLGLKPYGCEVCGRHFR 38
C C K ++ L + V C C H
Sbjct: 33 CPKCKKIMYT-KELAENLNV--------CFNCDHHIA 60
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1
Length = 33
Score = 23.3 bits (50), Expect = 9.9
Identities = 8/28 (28%), Positives = 11/28 (39%)
Query: 85 YQCEFCHKAFRASSYLQNHRRIHTGEKP 112
+ C C K F S +L H +H
Sbjct: 3 FACPECPKRFMRSDHLSKHITLHELLGE 30
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.136 0.457
Gapped
Lambda K H
0.267 0.0436 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,638,450
Number of extensions: 141800
Number of successful extensions: 1864
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1521
Number of HSP's successfully gapped: 842
Length of query: 171
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 84
Effective length of database: 4,272,666
Effective search space: 358903944
Effective search space used: 358903944
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.3 bits)