Query psy12259
Match_columns 848
No_of_seqs 357 out of 602
Neff 4.6
Searched_HMMs 46136
Date Fri Aug 16 22:47:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12259.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12259hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2721|consensus 100.0 4.6E-88 9.9E-93 677.4 17.7 243 600-842 4-259 (260)
2 COG4021 Uncharacterized conser 100.0 1.8E-73 4E-78 571.8 18.1 240 575-835 1-248 (249)
3 KOG2721|consensus 100.0 8.3E-54 1.8E-58 430.5 10.9 218 394-635 17-260 (260)
4 PF04446 Thg1: tRNAHis guanyly 100.0 5.2E-47 1.1E-51 364.9 11.0 125 600-724 6-135 (135)
5 COG4021 Uncharacterized conser 100.0 1E-41 2.2E-46 343.2 8.8 193 376-599 10-209 (249)
6 PF14413 Thg1C: Thg1 C termina 100.0 5.9E-40 1.3E-44 310.4 6.6 114 725-839 1-120 (120)
7 PF04446 Thg1: tRNAHis guanyly 99.9 2.3E-25 5E-30 215.1 7.7 115 391-521 18-135 (135)
8 PF14413 Thg1C: Thg1 C termina 99.8 1.4E-22 3E-27 192.4 0.4 74 522-601 1-80 (120)
9 PRK11138 outer membrane biogen 97.2 0.0034 7.4E-08 70.0 12.7 98 57-172 79-184 (394)
10 PF13360 PQQ_2: PQQ-like domai 96.7 0.0096 2.1E-07 60.3 9.7 103 57-174 46-148 (238)
11 PF13360 PQQ_2: PQQ-like domai 96.6 0.018 3.9E-07 58.3 11.3 99 57-173 3-101 (238)
12 cd00216 PQQ_DH Dehydrogenases 96.5 0.035 7.7E-07 64.4 14.4 112 57-172 175-325 (488)
13 TIGR03300 assembly_YfgL outer 96.4 0.031 6.7E-07 61.6 12.6 95 57-172 75-169 (377)
14 cd00216 PQQ_DH Dehydrogenases 96.4 0.018 3.8E-07 66.8 10.5 132 57-200 311-459 (488)
15 TIGR03075 PQQ_enz_alc_DH PQQ-d 96.1 0.054 1.2E-06 63.8 12.6 65 105-172 272-339 (527)
16 PRK11138 outer membrane biogen 95.6 0.12 2.6E-06 57.9 12.5 96 57-174 266-361 (394)
17 TIGR03075 PQQ_enz_alc_DH PQQ-d 94.6 0.22 4.8E-06 58.8 11.2 106 57-173 79-196 (527)
18 TIGR03300 assembly_YfgL outer 94.1 0.33 7.3E-06 53.5 10.8 97 57-171 115-213 (377)
19 TIGR03074 PQQ_membr_DH membran 93.9 0.45 9.7E-06 58.8 12.1 114 57-173 336-484 (764)
20 PF13517 VCBS: Repeat domain i 93.3 0.2 4.4E-06 41.5 5.6 59 88-149 1-61 (61)
21 TIGR03074 PQQ_membr_DH membran 91.9 1 2.2E-05 55.7 11.4 107 57-171 204-349 (764)
22 smart00564 PQQ beta-propeller 90.3 0.4 8.7E-06 34.9 3.6 26 96-121 8-33 (33)
23 PF01011 PQQ: PQQ enzyme repea 90.2 0.51 1.1E-05 36.3 4.3 25 99-123 5-29 (38)
24 COG1520 FOG: WD40-like repeat 85.2 4.5 9.7E-05 45.1 9.6 98 57-170 78-175 (370)
25 KOG3637|consensus 83.9 2 4.4E-05 54.8 6.8 87 81-169 325-426 (1030)
26 COG1520 FOG: WD40-like repeat 80.6 4.2 9.1E-05 45.3 7.1 107 58-171 210-325 (370)
27 PF01839 FG-GAP: FG-GAP repeat 73.7 1.9 4E-05 33.1 1.3 15 136-150 7-21 (34)
28 PF14269 Arylsulfotran_2: Aryl 73.0 6.2 0.00013 43.7 5.7 64 104-170 96-177 (299)
29 PF01839 FG-GAP: FG-GAP repeat 70.7 3 6.4E-05 32.0 1.8 19 392-410 3-21 (34)
30 KOG4649|consensus 67.9 15 0.00032 40.8 6.9 70 94-178 23-93 (354)
31 smart00191 Int_alpha Integrin 67.1 6.2 0.00014 33.0 3.2 32 136-167 12-46 (58)
32 COG4993 Gcd Glucose dehydrogen 62.9 27 0.00059 42.6 8.4 135 58-200 613-754 (773)
33 PF13517 VCBS: Repeat domain i 62.5 7.3 0.00016 32.2 2.8 25 138-165 1-25 (61)
34 PF01011 PQQ: PQQ enzyme repea 53.4 19 0.00041 27.6 3.5 23 56-78 9-31 (38)
35 PF13570 PQQ_3: PQQ-like domai 53.1 29 0.00062 26.6 4.5 40 67-113 1-40 (40)
36 COG4993 Gcd Glucose dehydrogen 50.8 57 0.0012 40.0 8.4 71 53-124 221-302 (773)
37 PF05567 Neisseria_PilC: Neiss 49.0 66 0.0014 36.3 8.3 45 104-150 181-226 (335)
38 smart00564 PQQ beta-propeller 38.4 29 0.00062 25.0 2.3 17 57-73 16-32 (33)
39 KOG2110|consensus 30.8 3.1E+02 0.0067 31.9 9.8 92 26-123 95-204 (391)
40 cd00200 WD40 WD40 domain, foun 29.9 5.3E+02 0.011 25.1 10.7 102 58-173 64-172 (289)
41 KOG4649|consensus 26.8 98 0.0021 34.7 4.9 59 57-123 33-92 (354)
42 KOG2321|consensus 25.3 1.7E+02 0.0037 35.8 6.8 68 51-119 182-255 (703)
43 PF05935 Arylsulfotrans: Aryls 23.7 2.4E+02 0.0052 33.3 7.8 84 58-145 225-333 (477)
44 PF14781 BBS2_N: Ciliary BBSom 23.4 4.1E+02 0.0089 26.9 8.1 36 76-113 47-82 (136)
45 KOG1539|consensus 21.6 4.4E+02 0.0094 33.7 9.4 105 54-171 122-237 (910)
46 PF14783 BBS2_Mid: Ciliary BBS 20.4 79 0.0017 30.8 2.5 14 136-149 7-20 (111)
No 1
>KOG2721|consensus
Probab=100.00 E-value=4.6e-88 Score=677.40 Aligned_cols=243 Identities=52% Similarity=0.957 Sum_probs=231.5
Q ss_pred cccccccccCCCceEEEEecCCChhccccccCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEeeeeeEEEEEecCCccc
Q psy12259 600 MEFESHDRCLPNCFIVVRVDGKGFHKFTEAHGFDKPNDRSGLWLMSKAAACVIEEFNDICCAYGQSDEYSFIFSRNTNIY 679 (848)
Q Consensus 600 k~fE~~~~llp~~~iVVRiDGr~Fhkfs~~~~F~KP~D~r~l~lM~~aA~~vm~~f~~i~~AY~~SDEiSfvf~~~~~~f 679 (848)
|+||.+|++||.+|||||||||+|||||+.|+|+||||+++|++||+||.+||++|+||++|||+||||||||++++.+|
T Consensus 4 ksFE~~d~~lp~~~iVvRIDGr~FhrFs~~h~FeKPNDe~aLnLMnscA~~Vl~ef~DIv~AyG~SDEYSFV~kk~t~~f 83 (260)
T KOG2721|consen 4 KSFEVEDEVLPPCWIVVRIDGRDFHRFSKVHEFEKPNDETALNLMNSCASAVLEEFPDIVFAYGYSDEYSFVFKKSTELF 83 (260)
T ss_pred hhhhcccccccceEEEEEEcCcchhhhhhhhcccCCChHHHHHHHHHHHHHHHHhccceEEEeccCcceeeeeccchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchhhhhhHhHHHhHHHhHHHHHh-ccccCCCCCccceEEEcCChhhHHHHHHHHHHHHHHhhcchhhhhHHHHhcC
Q psy12259 680 NRRADKIASVVCSLFTSSYGFYWDKFC-CKKLKYPPAFDSRVILYPTVRNLRDYLSWRQADAHINNLYNTAFWGLVQKCG 758 (848)
Q Consensus 680 ~rR~~KL~S~~aS~fSs~f~~~w~~~f-~~~L~~pp~FD~Rvv~~Ps~~~v~dYl~WRQ~DchrNnl~nt~fw~Lv~~~G 758 (848)
+||.+||+|.+||+|||.|++.|++|| +++|.+||+||||||+||+.+.++|||+|||+|||+|||||||||+||+++|
T Consensus 84 kRr~sKi~s~v~SfF~s~YV~~W~~ffp~~~L~y~PsFdgrvV~yps~q~LkdYLaWRq~DcHinNlYnT~fWmLv~ksG 163 (260)
T KOG2721|consen 84 KRRASKILSLVASFFASVYVTKWKKFFPHLKLLYAPSFDGRVVSYPSVQVLKDYLAWRQVDCHINNLYNTCFWMLVKKSG 163 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccccCCCCCCcEEecccHHHHHHHHHHHhhcccccchhhHHHHHHHHHhC
Confidence 999999999999999999999999999 6999999999999999999999999999999999999999999999999899
Q ss_pred CCHHHHHHHhcCCChhHHHHHHhhhcCCCCCCcccccccceEEEEeeccC-C-------CCC----cccceeeeeccccc
Q psy12259 759 HSKQEAEKILRGTVSSEKHELLFKDCKINYNNECELYKKGTIIIKSLVPS-S-------TGS----PVCNTVYVPLNCDI 826 (848)
Q Consensus 759 ~s~~eA~~~L~G~~s~dknElLf~~~GINyn~~P~~~RkGs~i~r~~~~~-~-------~~~----~~~r~~i~~~h~di 826 (848)
+|+.||++.|+||.+++||||||++||||||++|++||+||++.|+++.. . ++. +..|+++.+.|+||
T Consensus 164 ~t~~qaq~~Lkgt~s~ekneilf~efginyn~~p~~~rkGs~l~rk~v~~~~~k~~~~~~~k~~~~~~~~~k~lp~~~~~ 243 (260)
T KOG2721|consen 164 KTPSQAQEILKGTFSAEKNEILFSEFGINYNNEPEMFRKGSILIRKKVKGQEWKINTEIQGKKLFVTYTRTKPLPLHVDI 243 (260)
T ss_pred CChHHHHHHHHhhhhhhhhhHHHHHhCcccCCchHHHhcccEEEEecCCcceeeechhcccceeeeeeccCcceeEEEEE
Confidence 99999999999999999999999999999999999999999999997731 1 111 12245788899999
Q ss_pred CCccccccCCccccCC
Q psy12259 827 INDKFWNENPHILDSS 842 (848)
Q Consensus 827 i~d~fw~~~~~~l~~~ 842 (848)
|+|+||.++|.++.++
T Consensus 244 i~d~f~~~~p~~~~~~ 259 (260)
T KOG2721|consen 244 IGDDFWKEHPEILDED 259 (260)
T ss_pred ecCcccccCchhhccC
Confidence 9999999999999875
No 2
>COG4021 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1.8e-73 Score=571.84 Aligned_cols=240 Identities=42% Similarity=0.635 Sum_probs=219.5
Q ss_pred ccccccccccccCCCCCCccccccccccccccccCCCceEEEEecCCChhccccccCCCCCCCHHHHHHHHHHHHHHHHh
Q psy12259 575 RYSGFDYIDWLNFSHTPKVTTCSCFMEFESHDRCLPNCFIVVRVDGKGFHKFTEAHGFDKPNDRSGLWLMSKAAACVIEE 654 (848)
Q Consensus 575 a~sk~Eyv~~in~n~~p~~~~c~~~k~fE~~~~llp~~~iVVRiDGr~Fhkfs~~~~F~KP~D~r~l~lM~~aA~~vm~~ 654 (848)
|+++++|+ |++|.+++++|+|+||+|||||+||+||+.|+|+||||+|+++||++||+.+|++
T Consensus 1 ~k~~~~~~-----------------~evya~~R~~P~t~iVlRiDGr~Fhk~tk~l~FeKPyD~~f~~lM~~tA~~lv~~ 63 (249)
T COG4021 1 AKSKFMYV-----------------REVYAHDRILPQTYIVLRIDGRGFHKFTKFLDFEKPYDERFLKLMNATAKNLVLK 63 (249)
T ss_pred CCCcchhh-----------------hhhhhhhcCCCCceEEEEecChhhhHHHhhcCcCCcchHHHHHHHHHHHHHHHHH
Confidence 57899999 9999999999999999999999999999999999999999999999999988887
Q ss_pred c-CCeEEEEeeeeeEEEEEecCCcccccccchhhhhhHhHHHhHHHhHHHHHhccccCCCCCccceEEEcCChhhHHHHH
Q psy12259 655 F-NDICCAYGQSDEYSFIFSRNTNIYNRRADKIASVVCSLFTSSYGFYWDKFCCKKLKYPPAFDSRVILYPTVRNLRDYL 733 (848)
Q Consensus 655 f-~~i~~AY~~SDEiSfvf~~~~~~f~rR~~KL~S~~aS~fSs~f~~~w~~~f~~~L~~pp~FD~Rvv~~Ps~~~v~dYl 733 (848)
+ +||.+|||+|||||||+++++.||+||++||+|++||+|||+|+..|.++|+.+ .+|+||||+|+|| .++++|||
T Consensus 64 ~~~~i~LaYtfSDE~sfl~~~st~pF~gRveKL~Sv~~Sf~tS~f~r~~~~~~p~~--~~~sFDsR~V~~~-~~~i~dYf 140 (249)
T COG4021 64 YGLDIILAYTFSDEISFLLKSSTVPFNGRVEKLDSVFASFFTSAFTRLWAKFFPEK--HLPSFDSRCVAYP-LDTIPDYF 140 (249)
T ss_pred hCCCeEEEEecccceEEEeecCCccccchHHHHHHHHHHHHHHHHHHHhhccCCCC--CCCcccceEEecc-hhHHHHHH
Confidence 6 599999999999999999999999999999999999999999999999988644 7899999999998 77999999
Q ss_pred HHHHHHHHHhhcchhhhhHHHHhcCCCHHHHHHHhcCCChhHHHHHHhhhcCCCCCCcccccccceEEEEeeccCCC---
Q psy12259 734 SWRQADAHINNLYNTAFWGLVQKCGHSKQEAEKILRGTVSSEKHELLFKDCKINYNNECELYKKGTIIIKSLVPSST--- 810 (848)
Q Consensus 734 ~WRQ~DchrNnl~nt~fw~Lv~~~G~s~~eA~~~L~G~~s~dknElLf~~~GINyn~~P~~~RkGs~i~r~~~~~~~--- 810 (848)
.|||.||||||||||+||+|+. .|++++||+++|+||++.+||||||++||||||.+|+|||||+.+||..+..-.
T Consensus 141 ~wRQ~eawrN~L~s~tfW~L~~-rgl~~~ea~erLrG~ks~e~heiLfsefGIN~~r~P~wqkkG~~~yRvp~r~w~p~~ 219 (249)
T COG4021 141 HWRQVEAWRNNLYSTTFWQLII-RGLTPQEAEERLRGTKSNEKHEILFSEFGINYNREPEWQKKGVGVYRVPVRGWNPIR 219 (249)
T ss_pred HHHHHHHHHHhhhhHHHHHHHH-cCCChHHHHHHhcccccchHHHHHHHHhCCCcCCChHHHhcCceEEEccccccCCcc
Confidence 9999999999999999999995 899999999999999999999999999999999999999999999998753221
Q ss_pred ----CCcccceeeeecccccCCccccccC
Q psy12259 811 ----GSPVCNTVYVPLNCDIINDKFWNEN 835 (848)
Q Consensus 811 ----~~~~~r~~i~~~h~dii~d~fw~~~ 835 (848)
...+++..+-..|+-.|++.||.-.
T Consensus 220 ~~es~~~r~~~~~~i~~~~~iDe~fe~~~ 248 (249)
T COG4021 220 DEESLVTRKGEILHINVIAQIDELFEGYM 248 (249)
T ss_pred hhHHHHHhhhheeeeecceeccchhhhhc
Confidence 1123334555677888889998643
No 3
>KOG2721|consensus
Probab=100.00 E-value=8.3e-54 Score=430.46 Aligned_cols=218 Identities=34% Similarity=0.561 Sum_probs=191.7
Q ss_pred eEEEecCCCCCcceEEEEeeecCCCCCCCcccchhhhhhHHHHhhchhhHHHHHHhhhcCCeEEEeeecceeeEEeecCC
Q psy12259 394 LLLADLDKDGSQDLISYLVTYAGPDKSSDIQTWSLVSQIRVIRLEHELPKLYEFLHKKFNDICCAYGQSDEYSFIFSRNT 473 (848)
Q Consensus 394 ~~~~~ld~d~~~elisy~s~~~~~~~~~~~~~~~L~s~vrvirL~selpklyEavm~~~~~i~~aY~~SDEiSflf~~~~ 473 (848)
..|-.|||.+|+++ |..+.++||+|-.+.+|||.. ..+||+|||||++|||+||||||||++++
T Consensus 17 ~iVvRIDGr~FhrF----s~~h~FeKPNDe~aLnLMnsc------------A~~Vl~ef~DIv~AyG~SDEYSFV~kk~t 80 (260)
T KOG2721|consen 17 WIVVRIDGRDFHRF----SKVHEFEKPNDETALNLMNSC------------ASAVLEEFPDIVFAYGYSDEYSFVFKKST 80 (260)
T ss_pred EEEEEEcCcchhhh----hhhhcccCCChHHHHHHHHHH------------HHHHHHhccceEEEeccCcceeeeeccch
Confidence 45889999999985 456666666666666666544 34688899999999999999999999999
Q ss_pred cccccccchhhhhhhhhhhhhhhhhhhHhcc-cccCCCCcceeEEeeeCChhhHHHHHHHhhhcceeeccchhhhhhhhh
Q psy12259 474 NIYNRRADKIASVVCSLFTSSYGFYWDKFCC-KKLKYPPAFDSRVILYPTVRNLRDYLSWRQADAHINNLYNTAFWGLVQ 552 (848)
Q Consensus 474 ~~f~rR~~Kl~S~~aS~~Ss~f~~~w~~~f~-~~L~~~p~FD~Rvv~~P~~~~v~dYl~WRQ~Dch~Nnl~n~~fw~Lv~ 552 (848)
.+|+||.+||+|++||+|||+|++.|++||+ ++|.+||+||||||+||+.+.++|||+|||+||||||||||||||||+
T Consensus 81 ~~fkRr~sKi~s~v~SfF~s~YV~~W~~ffp~~~L~y~PsFdgrvV~yps~q~LkdYLaWRq~DcHinNlYnT~fWmLv~ 160 (260)
T KOG2721|consen 81 ELFKRRASKILSLVASFFASVYVTKWKKFFPHLKLLYAPSFDGRVVSYPSVQVLKDYLAWRQVDCHINNLYNTCFWMLVK 160 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccccCCCCCCcEEecccHHHHHHHHHHHhhcccccchhhHHHHHHHH
Confidence 9999999999999999999999999999996 899999999999999999999999999999999999999999999999
Q ss_pred hcCCCCchhhHHHhhhccccccccccccccc---cccCCCCCCc---ccccccccc---c----------------cccc
Q psy12259 553 KCGHSKQEPLKQLVLHKIGKNSRYSGFDYID---WLNFSHTPKV---TTCSCFMEF---E----------------SHDR 607 (848)
Q Consensus 553 ~g~~s~~eA~krl~~~lLs~tma~sk~Eyv~---~in~n~~p~~---~~c~~~k~f---E----------------~~~~ 607 (848)
++|+|++||++.|+ |+.+.+|+|.+- |||.|.+|.- |+|.+||.- | ....
T Consensus 161 ksG~t~~qaq~~Lk-----gt~s~ekneilf~efginyn~~p~~~rkGs~l~rk~v~~~~~k~~~~~~~k~~~~~~~~~k 235 (260)
T KOG2721|consen 161 KSGKTPSQAQEILK-----GTFSAEKNEILFSEFGINYNNEPEMFRKGSILIRKKVKGQEWKINTEIQGKKLFVTYTRTK 235 (260)
T ss_pred HhCCChHHHHHHHH-----hhhhhhhhhHHHHHhCcccCCchHHHhcccEEEEecCCcceeeechhcccceeeeeeccCc
Confidence 99999999999854 699999999987 9999999998 999999833 1 1235
Q ss_pred cCCCceEEEEecCCChhccccccCCCCC
Q psy12259 608 CLPNCFIVVRVDGKGFHKFTEAHGFDKP 635 (848)
Q Consensus 608 llp~~~iVVRiDGr~Fhkfs~~~~F~KP 635 (848)
.+| +.|.+|| ..|+++...+.+++|
T Consensus 236 ~lp--~~~~~i~-d~f~~~~p~~~~~~~ 260 (260)
T KOG2721|consen 236 PLP--LHVDIIG-DDFWKEHPEILDEDS 260 (260)
T ss_pred cee--EEEEEec-CcccccCchhhccCC
Confidence 666 7777777 999999988777764
No 4
>PF04446 Thg1: tRNAHis guanylyltransferase; InterPro: IPR007537 The Thg1 protein from Saccharomyces cerevisiae (Baker's yeast) is responsible for adding a GMP residue to the 5' end of tRNA His [].; PDB: 3OTE_A 3OTC_A 3OTD_A 3OTB_A.
Probab=100.00 E-value=5.2e-47 Score=364.87 Aligned_cols=125 Identities=58% Similarity=1.023 Sum_probs=103.0
Q ss_pred cccccccc--cCCCceEEEEecCCChhccccccCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEeeeeeEEEEEecCCc
Q psy12259 600 MEFESHDR--CLPNCFIVVRVDGKGFHKFTEAHGFDKPNDRSGLWLMSKAAACVIEEFNDICCAYGQSDEYSFIFSRNTN 677 (848)
Q Consensus 600 k~fE~~~~--llp~~~iVVRiDGr~Fhkfs~~~~F~KP~D~r~l~lM~~aA~~vm~~f~~i~~AY~~SDEiSfvf~~~~~ 677 (848)
|.||..+. |+|++|||||||||+|||||+.|+|+||||+|+|+||++||++||++++++++||||||||||||++.+.
T Consensus 6 k~~E~~~~~~l~p~~~ivvRiDG~~F~kft~~~~f~KP~D~r~~~~M~~aa~~l~~~~~~~~~aY~~SDEiSfvf~~~~~ 85 (135)
T PF04446_consen 6 KDFEQDDDLRLLPNTPIVVRIDGRGFHKFTKRHGFEKPNDERFLKAMNEAAKALMEEFPDIVLAYGQSDEISFVFRKSTP 85 (135)
T ss_dssp GGG----B----TTSEEEEEEEETTHHHHHHHTT--SS--HHHHHHHHHHHHHHHHHSSSEEEEEEETTEEEEEE-TT--
T ss_pred HhhccccccccCCCCeEEEEEeCcchhhhcccCCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEcCCeeEEEECCCCh
Confidence 99999887 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccchhhhhhHhHHHhHHHhHHHHHh-ccccCCC--CCccceEEEcC
Q psy12259 678 IYNRRADKIASVVCSLFTSSYGFYWDKFC-CKKLKYP--PAFDSRVILYP 724 (848)
Q Consensus 678 ~f~rR~~KL~S~~aS~fSs~f~~~w~~~f-~~~L~~p--p~FD~Rvv~~P 724 (848)
+|+||++||+|++||+|||+|+++|+++| +++|.+| |+||||||+||
T Consensus 86 ~f~~R~~Kl~S~~aS~~ss~f~~~~~~~~~~~~l~~~~~~~FD~R~v~~P 135 (135)
T PF04446_consen 86 LFNRRVEKLVSVVASLFSSSFSFYWSKFFPDTPLEYPHPPSFDARVVCYP 135 (135)
T ss_dssp TTTTBHHHHHHHHHHHHHHHHHHTHHHH-SSS---S-----EEEEEEEES
T ss_pred hhcchhhhHHHHHHHHHHHHHHHHHHHhccCCccCCCCccccCccEEeCc
Confidence 99999999999999999999999999999 6677655 99999999998
No 5
>COG4021 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1e-41 Score=343.16 Aligned_cols=193 Identities=30% Similarity=0.503 Sum_probs=162.8
Q ss_pred hhhccCCCCCCCCccccceEEEecCCCCCcceEEEEeeecCCCCCCCcccchhhhhhHHHHhhchhhHHHH-HHhhhcCC
Q psy12259 376 QLCHSNSCQPGTSLQEYSLLLADLDKDGSQDLISYLVTYAGPDKSSDIQTWSLVSQIRVIRLEHELPKLYE-FLHKKFND 454 (848)
Q Consensus 376 q~c~~~~cqpdl~~q~~s~~~~~ld~d~~~elisy~s~~~~~~~~~~~~~~~L~s~vrvirL~selpklyE-avm~~~~~ 454 (848)
|+=..+.|-|. +-.|..|||.||+++. ++.+++||+|- |.++||. ..+. .||+..+|
T Consensus 10 evya~~R~~P~------t~iVlRiDGr~Fhk~t----k~l~FeKPyD~---------~f~~lM~---~tA~~lv~~~~~~ 67 (249)
T COG4021 10 EVYAHDRILPQ------TYIVLRIDGRGFHKFT----KFLDFEKPYDE---------RFLKLMN---ATAKNLVLKYGLD 67 (249)
T ss_pred hhhhhhcCCCC------ceEEEEecChhhhHHH----hhcCcCCcchH---------HHHHHHH---HHHHHHHHHhCCC
Confidence 34444567775 3459999999999987 45566655555 4455543 2233 36677799
Q ss_pred eEEEeeecceeeEEeecCCcccccccchhhhhhhhhhhhhhhhhhhHhcccccCCCCcceeEEeeeCChhhHHHHHHHhh
Q psy12259 455 ICCAYGQSDEYSFIFSRNTNIYNRRADKIASVVCSLFTSSYGFYWDKFCCKKLKYPPAFDSRVILYPTVRNLRDYLSWRQ 534 (848)
Q Consensus 455 i~~aY~~SDEiSflf~~~~~~f~rR~~Kl~S~~aS~~Ss~f~~~w~~~f~~~L~~~p~FD~Rvv~~P~~~~v~dYl~WRQ 534 (848)
|++|||+|||||||+++++.+|+||++||.|++||+|||+|+..|.+||+.+ .+|+||||+|.|| .++|+|||.|||
T Consensus 68 i~LaYtfSDE~sfl~~~st~pF~gRveKL~Sv~~Sf~tS~f~r~~~~~~p~~--~~~sFDsR~V~~~-~~~i~dYf~wRQ 144 (249)
T COG4021 68 IILAYTFSDEISFLLKSSTVPFNGRVEKLDSVFASFFTSAFTRLWAKFFPEK--HLPSFDSRCVAYP-LDTIPDYFHWRQ 144 (249)
T ss_pred eEEEEecccceEEEeecCCccccchHHHHHHHHHHHHHHHHHHHhhccCCCC--CCCcccceEEecc-hhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999543 7999999999999 779999999999
Q ss_pred hcceeeccchhhhhhhhhhcCCCCchhhHHHhhhccccccccccccccc---cccCCCCCCc---cccccc
Q psy12259 535 ADAHINNLYNTAFWGLVQKCGHSKQEPLKQLVLHKIGKNSRYSGFDYID---WLNFSHTPKV---TTCSCF 599 (848)
Q Consensus 535 ~Dch~Nnl~n~~fw~Lv~~g~~s~~eA~krl~~~lLs~tma~sk~Eyv~---~in~n~~p~~---~~c~~~ 599 (848)
+||||||||||+||+|+. +|++++||+++| .|+.+++|+|.+= |||.|..|.| |.=..|
T Consensus 145 ~eawrN~L~s~tfW~L~~-rgl~~~ea~erL-----rG~ks~e~heiLfsefGIN~~r~P~wqkkG~~~yR 209 (249)
T COG4021 145 VEAWRNNLYSTTFWQLII-RGLTPQEAEERL-----RGTKSNEKHEILFSEFGINYNREPEWQKKGVGVYR 209 (249)
T ss_pred HHHHHHhhhhHHHHHHHH-cCCChHHHHHHh-----cccccchHHHHHHHHhCCCcCCChHHHhcCceEEE
Confidence 999999999999999999 779999999994 5688999999875 9999999999 544443
No 6
>PF14413 Thg1C: Thg1 C terminal domain; PDB: 3OTE_A 3OTC_A 3OTD_A 3OTB_A.
Probab=100.00 E-value=5.9e-40 Score=310.40 Aligned_cols=114 Identities=50% Similarity=0.846 Sum_probs=87.2
Q ss_pred ChhhHHHHHHHHHHHHHHhhcchhhhhHHHHhcCCCHHHHHHHhcCCChhHHHHHHhhhcCCCCCCcccccccceEEEEe
Q psy12259 725 TVRNLRDYLSWRQADAHINNLYNTAFWGLVQKCGHSKQEAEKILRGTVSSEKHELLFKDCKINYNNECELYKKGTIIIKS 804 (848)
Q Consensus 725 s~~~v~dYl~WRQ~DchrNnl~nt~fw~Lv~~~G~s~~eA~~~L~G~~s~dknElLf~~~GINyn~~P~~~RkGs~i~r~ 804 (848)
+.++|+|||+|||+|||||||||||||+|| ++|+|++||+++|+||.++|||||||++||||||++|+||||||+|+|+
T Consensus 1 ~~~~v~dYl~WRQ~D~hrN~l~~~~fw~Lv-~~g~s~~ea~~~L~G~~~~~knElLf~~fGINyn~~P~~~RrGs~i~r~ 79 (120)
T PF14413_consen 1 SDEEVRDYLSWRQADCHRNNLYNTCFWALV-KSGFSPKEAHKRLKGTKSSDKNELLFSRFGINYNNLPAWFRRGSCIYRE 79 (120)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHTT--HHHHHHHHHHCC---GGGS-HHHHH-EEEEEE
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHcCCCHHHHHHHHHHHhCCChhhCcHHHcCCeEEEEe
Confidence 468999999999999999999999999999 9999999999999999999999999999999999999999999999996
Q ss_pred e--ccCCCC--Cc--ccceeeeecccccCCccccccCCccc
Q psy12259 805 L--VPSSTG--SP--VCNTVYVPLNCDIINDKFWNENPHIL 839 (848)
Q Consensus 805 ~--~~~~~~--~~--~~r~~i~~~h~dii~d~fw~~~~~~l 839 (848)
. +....+ .+ +.|.++++.|+|||+|+||++||+||
T Consensus 80 ~~~~~~~~~~~~~~~r~r~~~~~~~~d~i~~~Fw~~~~~~l 120 (120)
T PF14413_consen 80 YEGYNPKTGEKVTVKRRRDWIIPLHSDIIGDEFWEEHPYLL 120 (120)
T ss_dssp E----SS--SEEEEEEECEEEEEE---SSSHHHHHH-TCCC
T ss_pred cCCCCccccCcCcceeecccceecccCcccHHHHHhChhcC
Confidence 3 111111 11 23457999999999999999999997
No 7
>PF04446 Thg1: tRNAHis guanylyltransferase; InterPro: IPR007537 The Thg1 protein from Saccharomyces cerevisiae (Baker's yeast) is responsible for adding a GMP residue to the 5' end of tRNA His [].; PDB: 3OTE_A 3OTC_A 3OTD_A 3OTB_A.
Probab=99.92 E-value=2.3e-25 Score=215.14 Aligned_cols=115 Identities=38% Similarity=0.706 Sum_probs=87.5
Q ss_pred ccceEEEecCCCCCcceEEEEeeecCCCCCCCcccchhhhhhHHHHhhchhhHHHHHHhhhcCCeEEEeeecceeeEEee
Q psy12259 391 EYSLLLADLDKDGSQDLISYLVTYAGPDKSSDIQTWSLVSQIRVIRLEHELPKLYEFLHKKFNDICCAYGQSDEYSFIFS 470 (848)
Q Consensus 391 ~~s~~~~~ld~d~~~elisy~s~~~~~~~~~~~~~~~L~s~vrvirL~selpklyEavm~~~~~i~~aY~~SDEiSflf~ 470 (848)
-+.-.|..|||.||+++..- ..++.+++.|+++++ ......||++++|+++||||||||||||+
T Consensus 18 p~~~ivvRiDG~~F~kft~~-------------~~f~KP~D~r~~~~M---~~aa~~l~~~~~~~~~aY~~SDEiSfvf~ 81 (135)
T PF04446_consen 18 PNTPIVVRIDGRGFHKFTKR-------------HGFEKPNDERFLKAM---NEAAKALMEEFPDIVLAYGQSDEISFVFR 81 (135)
T ss_dssp TTSEEEEEEEETTHHHHHHH-------------TT--SS--HHHHHHH---HHHHHHHHHHSSSEEEEEEETTEEEEEE-
T ss_pred CCCeEEEEEeCcchhhhccc-------------CCCCCCCCHHHHHHH---HHHHHHHHHhCCCcEEEEEcCCeeEEEEC
Confidence 34567999999999987621 234566677787777 45566899999999999999999999999
Q ss_pred cCCcccccccchhhhhhhhhhhhhhhhhhhHhc-ccccC--CCCcceeEEeeeC
Q psy12259 471 RNTNIYNRRADKIASVVCSLFTSSYGFYWDKFC-CKKLK--YPPAFDSRVILYP 521 (848)
Q Consensus 471 ~~~~~f~rR~~Kl~S~~aS~~Ss~f~~~w~~~f-~~~L~--~~p~FD~Rvv~~P 521 (848)
+.+.+|+||++||+|++||+|||.|+++|+++| +++|. .||+||||||+||
T Consensus 82 ~~~~~f~~R~~Kl~S~~aS~~ss~f~~~~~~~~~~~~l~~~~~~~FD~R~v~~P 135 (135)
T PF04446_consen 82 KSTPLFNRRVEKLVSVVASLFSSSFSFYWSKFFPDTPLEYPHPPSFDARVVCYP 135 (135)
T ss_dssp TT--TTTTBHHHHHHHHHHHHHHHHHHTHHHH-SSS---S-----EEEEEEEES
T ss_pred CCChhhcchhhhHHHHHHHHHHHHHHHHHHHhccCCccCCCCccccCccEEeCc
Confidence 999999999999999999999999999999988 45565 4599999999998
No 8
>PF14413 Thg1C: Thg1 C terminal domain; PDB: 3OTE_A 3OTC_A 3OTD_A 3OTB_A.
Probab=99.84 E-value=1.4e-22 Score=192.36 Aligned_cols=74 Identities=41% Similarity=0.654 Sum_probs=58.1
Q ss_pred ChhhHHHHHHHhhhcceeeccchhhhhhhhhhcCCCCchhhHHHhhhccccccccccccccc---cccCCCCCCc---cc
Q psy12259 522 TVRNLRDYLSWRQADAHINNLYNTAFWGLVQKCGHSKQEPLKQLVLHKIGKNSRYSGFDYID---WLNFSHTPKV---TT 595 (848)
Q Consensus 522 ~~~~v~dYl~WRQ~Dch~Nnl~n~~fw~Lv~~g~~s~~eA~krl~~~lLs~tma~sk~Eyv~---~in~n~~p~~---~~ 595 (848)
+.++|+|||+|||+|||||||||||||+|| ++|+|++||+++| +|+.+.+|+|++- |||||++|+| |+
T Consensus 1 ~~~~v~dYl~WRQ~D~hrN~l~~~~fw~Lv-~~g~s~~ea~~~L-----~G~~~~~knElLf~~fGINyn~~P~~~RrGs 74 (120)
T PF14413_consen 1 SDEEVRDYLSWRQADCHRNNLYNTCFWALV-KSGFSPKEAHKRL-----KGTKSSDKNELLFSRFGINYNNLPAWFRRGS 74 (120)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHH-----TT--HHHHHHHHHHCC---GGGS-HHHHH-E
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHH-----cCCCHHHHHHHHHHHhCCChhhCcHHHcCCe
Confidence 468999999999999999999999999999 6789999999994 4688899999974 9999999999 99
Q ss_pred cccccc
Q psy12259 596 CSCFME 601 (848)
Q Consensus 596 c~~~k~ 601 (848)
|+.++.
T Consensus 75 ~i~r~~ 80 (120)
T PF14413_consen 75 CIYREY 80 (120)
T ss_dssp EEEEEE
T ss_pred EEEEec
Confidence 999953
No 9
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.20 E-value=0.0034 Score=69.97 Aligned_cols=98 Identities=21% Similarity=0.332 Sum_probs=66.0
Q ss_pred ccEEEEeCCCCceeeEeecCCCcE--------EeeecCcccCCCCCccEEEEccCceEEEEeCCCcceeeeeccCCCCCc
Q psy12259 57 GGLIALDSVRPVELWRKTLNNVPK--------EVDCGLIDINLDGVLDCIVIADNGYLAVLSQATGNLLWRKTNNGYKDG 128 (848)
Q Consensus 57 ~gvlAlsG~nGs~LW~~~l~~ev~--------~i~C~l~dl~~dg~~dCLl~Gr~g~L~AIn~~TG~~lW~~~~~~~~~~ 128 (848)
+.|.|++-.+|+++|+..+..+.. .+.++ +-..+ ...++.+..|.|.|+|..||+.+|+.+....
T Consensus 79 g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-~~v~~---~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~--- 151 (394)
T PRK11138 79 GLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGG-VTVAG---GKVYIGSEKGQVYALNAEDGEVAWQTKVAGE--- 151 (394)
T ss_pred CeEEEEECCCCcEeeEEcCCCcccccccccccccccc-cEEEC---CEEEEEcCCCEEEEEECCCCCCcccccCCCc---
Confidence 478999999999999998765311 12222 11111 1234455778999999999999999875432
Q ss_pred ccccceeccCCCCCCccceEEEeecCCceeEEEEEeCCCCcccC
Q psy12259 129 KMKFPLIVDDLTGDGVNDLVLISYMGPSKYQLALLSGSNGVQIG 172 (848)
Q Consensus 129 ~~~~P~lvPDlDgDgV~DLLv~t~~~~~~~~l~LiSGkTG~~IG 172 (848)
....|++. .|.+++...+ ++++-+.=+||+++=
T Consensus 152 ~~ssP~v~--------~~~v~v~~~~---g~l~ald~~tG~~~W 184 (394)
T PRK11138 152 ALSRPVVS--------DGLVLVHTSN---GMLQALNESDGAVKW 184 (394)
T ss_pred eecCCEEE--------CCEEEEECCC---CEEEEEEccCCCEee
Confidence 24467663 2456654443 678899999999863
No 10
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.67 E-value=0.0096 Score=60.27 Aligned_cols=103 Identities=20% Similarity=0.224 Sum_probs=65.6
Q ss_pred ccEEEEeCCCCceeeEeecCCCcEEeeecCcccCCCCCccEEEEccCceEEEEeCCCcceeeeeccCCCCCcccccceec
Q psy12259 57 GGLIALDSVRPVELWRKTLNNVPKEVDCGLIDINLDGVLDCIVIADNGYLAVLSQATGNLLWRKTNNGYKDGKMKFPLIV 136 (848)
Q Consensus 57 ~gvlAlsG~nGs~LW~~~l~~ev~~i~C~l~dl~~dg~~dCLl~Gr~g~L~AIn~~TG~~lW~~~~~~~~~~~~~~P~lv 136 (848)
+.|.|++..+|+++|+..+...+... +... + ...++....+.+.++|..||+.+|+.............+ ..
T Consensus 46 ~~l~~~d~~tG~~~W~~~~~~~~~~~----~~~~-~--~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~-~~ 117 (238)
T PF13360_consen 46 GNLYALDAKTGKVLWRFDLPGPISGA----PVVD-G--GRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSS-SS 117 (238)
T ss_dssp SEEEEEETTTSEEEEEEECSSCGGSG----EEEE-T--TEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB---SE
T ss_pred CEEEEEECCCCCEEEEeeccccccce----eeec-c--cccccccceeeeEecccCCcceeeeeccccccccccccc-cC
Confidence 58999999999999999996553333 1111 1 234455556688999999999999953221111111111 12
Q ss_pred cCCCCCCccceEEEeecCCceeEEEEEeCCCCcccCCc
Q psy12259 137 DDLTGDGVNDLVLISYMGPSKYQLALLSGSNGVQIGTP 174 (848)
Q Consensus 137 PDlDgDgV~DLLv~t~~~~~~~~l~LiSGkTG~~IG~~ 174 (848)
|.++ .|.+++...+ +.++.+.-+||+++-..
T Consensus 118 ~~~~----~~~~~~~~~~---g~l~~~d~~tG~~~w~~ 148 (238)
T PF13360_consen 118 PAVD----GDRLYVGTSS---GKLVALDPKTGKLLWKY 148 (238)
T ss_dssp EEEE----TTEEEEEETC---SEEEEEETTTTEEEEEE
T ss_pred ceEe----cCEEEEEecc---CcEEEEecCCCcEEEEe
Confidence 3333 5666665543 77999999999996554
No 11
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.62 E-value=0.018 Score=58.26 Aligned_cols=99 Identities=24% Similarity=0.255 Sum_probs=65.6
Q ss_pred ccEEEEeCCCCceeeEeecCCCcEEeeecCcccCCCCCccEEEEccCceEEEEeCCCcceeeeeccCCCCCcccccceec
Q psy12259 57 GGLIALDSVRPVELWRKTLNNVPKEVDCGLIDINLDGVLDCIVIADNGYLAVLSQATGNLLWRKTNNGYKDGKMKFPLIV 136 (848)
Q Consensus 57 ~gvlAlsG~nGs~LW~~~l~~ev~~i~C~l~dl~~dg~~dCLl~Gr~g~L~AIn~~TG~~lW~~~~~~~~~~~~~~P~lv 136 (848)
+.|.|++-.+|+++|+..+.+.....-|.....+ .-+++....+.|.|+|..||+.+|+.+.... +..+
T Consensus 3 g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~----~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~----~~~~--- 71 (238)
T PF13360_consen 3 GTLSALDPRTGKELWSYDLGPGIGGPVATAVPDG----GRVYVASGDGNLYALDAKTGKVLWRFDLPGP----ISGA--- 71 (238)
T ss_dssp SEEEEEETTTTEEEEEEECSSSCSSEEETEEEET----TEEEEEETTSEEEEEETTTSEEEEEEECSSC----GGSG---
T ss_pred CEEEEEECCCCCEEEEEECCCCCCCccceEEEeC----CEEEEEcCCCEEEEEECCCCCEEEEeecccc----ccce---
Confidence 5789999999999999988553233333211111 2466666888899999999999999876422 1111
Q ss_pred cCCCCCCccceEEEeecCCceeEEEEEeCCCCcccCC
Q psy12259 137 DDLTGDGVNDLVLISYMGPSKYQLALLSGSNGVQIGT 173 (848)
Q Consensus 137 PDlDgDgV~DLLv~t~~~~~~~~l~LiSGkTG~~IG~ 173 (848)
|-++++.+ ++...+ +++..+.-+||+++=+
T Consensus 72 ~~~~~~~v----~v~~~~---~~l~~~d~~tG~~~W~ 101 (238)
T PF13360_consen 72 PVVDGGRV----YVGTSD---GSLYALDAKTGKVLWS 101 (238)
T ss_dssp EEEETTEE----EEEETT---SEEEEEETTTSCEEEE
T ss_pred eeeccccc----ccccce---eeeEecccCCcceeee
Confidence 33333333 443433 4799999999999766
No 12
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.55 E-value=0.035 Score=64.37 Aligned_cols=112 Identities=18% Similarity=0.195 Sum_probs=67.6
Q ss_pred ccEEEEeCCCCceeeEeecCC-CcEEe--------eecCccc------CCCCCccEEEEccC------------------
Q psy12259 57 GGLIALDSVRPVELWRKTLNN-VPKEV--------DCGLIDI------NLDGVLDCIVIADN------------------ 103 (848)
Q Consensus 57 ~gvlAlsG~nGs~LW~~~l~~-ev~~i--------~C~l~dl------~~dg~~dCLl~Gr~------------------ 103 (848)
+.|.|++-.+|+.+|...+.. ++... .|+.... .-+...+=+++|..
T Consensus 175 g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~ 254 (488)
T cd00216 175 GALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLY 254 (488)
T ss_pred cEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCc
Confidence 589999999999999988742 22111 1210000 00111233455432
Q ss_pred -ceEEEEeCCCcceeeeeccCCCCC---ccccccee--ccCCCCCCccceEEEeecCCceeEEEEEeCCCCcccC
Q psy12259 104 -GYLAVLSQATGNLLWRKTNNGYKD---GKMKFPLI--VDDLTGDGVNDLVLISYMGPSKYQLALLSGSNGVQIG 172 (848)
Q Consensus 104 -g~L~AIn~~TG~~lW~~~~~~~~~---~~~~~P~l--vPDlDgDgV~DLLv~t~~~~~~~~l~LiSGkTG~~IG 172 (848)
+.+.|+|..||+.+|++....... .....|++ ++|+||+.+ +++++...+ +.+.-+.-+||+++=
T Consensus 255 ~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~-~~V~~g~~~---G~l~ald~~tG~~~W 325 (488)
T cd00216 255 TDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPV-PAIVHAPKN---GFFYVLDRTTGKLIS 325 (488)
T ss_pred eeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCee-EEEEEECCC---ceEEEEECCCCcEee
Confidence 269999999999999986432211 12234565 556777755 455443322 789999999998853
No 13
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=96.45 E-value=0.031 Score=61.57 Aligned_cols=95 Identities=24% Similarity=0.396 Sum_probs=65.9
Q ss_pred ccEEEEeCCCCceeeEeecCCCcEEeeecCcccCCCCCccEEEEccCceEEEEeCCCcceeeeeccCCCCCcccccceec
Q psy12259 57 GGLIALDSVRPVELWRKTLNNVPKEVDCGLIDINLDGVLDCIVIADNGYLAVLSQATGNLLWRKTNNGYKDGKMKFPLIV 136 (848)
Q Consensus 57 ~gvlAlsG~nGs~LW~~~l~~ev~~i~C~l~dl~~dg~~dCLl~Gr~g~L~AIn~~TG~~lW~~~~~~~~~~~~~~P~lv 136 (848)
+.|.|++-.+|+++|+..+...+. .+ +-++ + ..+++.+..|.+.|+|..||+.+|+...... ....|++
T Consensus 75 g~v~a~d~~tG~~~W~~~~~~~~~---~~-p~v~-~--~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~---~~~~p~v- 143 (377)
T TIGR03300 75 GTVVALDAETGKRLWRVDLDERLS---GG-VGAD-G--GLVFVGTEKGEVIALDAEDGKELWRAKLSSE---VLSPPLV- 143 (377)
T ss_pred CeEEEEEccCCcEeeeecCCCCcc---cc-eEEc-C--CEEEEEcCCCEEEEEECCCCcEeeeeccCce---eecCCEE-
Confidence 468999999999999998877532 12 2222 1 3567777889999999999999999764432 1234544
Q ss_pred cCCCCCCccceEEEeecCCceeEEEEEeCCCCcccC
Q psy12259 137 DDLTGDGVNDLVLISYMGPSKYQLALLSGSNGVQIG 172 (848)
Q Consensus 137 PDlDgDgV~DLLv~t~~~~~~~~l~LiSGkTG~~IG 172 (848)
++ |.+++...+ +.+..+.-+||+.+=
T Consensus 144 ---~~----~~v~v~~~~---g~l~a~d~~tG~~~W 169 (377)
T TIGR03300 144 ---AN----GLVVVRTND---GRLTALDAATGERLW 169 (377)
T ss_pred ---EC----CEEEEECCC---CeEEEEEcCCCceee
Confidence 22 345554333 679999999998753
No 14
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.35 E-value=0.018 Score=66.80 Aligned_cols=132 Identities=17% Similarity=0.180 Sum_probs=75.5
Q ss_pred ccEEEEeCCCCceeeEeecCCCcEEeeecCcccCCC---------CCccEEEEccCceEEEEeCCCcceeeeeccCCCC-
Q psy12259 57 GGLIALDSVRPVELWRKTLNNVPKEVDCGLIDINLD---------GVLDCIVIADNGYLAVLSQATGNLLWRKTNNGYK- 126 (848)
Q Consensus 57 ~gvlAlsG~nGs~LW~~~l~~ev~~i~C~l~dl~~d---------g~~dCLl~Gr~g~L~AIn~~TG~~lW~~~~~~~~- 126 (848)
|.|.||+-.+|+++|+..+.......+=+...+... ....| .....|.+.|+|..||+.+|+.+.....
T Consensus 311 G~l~ald~~tG~~~W~~~~~~~~~~~~~~~vyv~~~~~~~~~~~~~~~~~-~~~~~G~l~AlD~~tG~~~W~~~~~~~~~ 389 (488)
T cd00216 311 GFFYVLDRTTGKLISARPEVEQPMAYDPGLVYLGAFHIPLGLPPQKKKRC-KKPGKGGLAALDPKTGKVVWEKREGTIRD 389 (488)
T ss_pred ceEEEEECCCCcEeeEeEeeccccccCCceEEEccccccccCcccccCCC-CCCCceEEEEEeCCCCcEeeEeeCCcccc
Confidence 458899999999999987641111100011111100 01113 2234678999999999999998755211
Q ss_pred Cc-----ccccceeccCCCCCCccceEEEeecCCceeEEEEEeCCCCcccCCccccCCcccccCc--cccCCcEEEEEcc
Q psy12259 127 DG-----KMKFPLIVDDLTGDGVNDLVLISYMGPSKYQLALLSGSNGVQIGTPLVKEDCDQMTGL--NLTSPDTVIYVCV 199 (848)
Q Consensus 127 ~~-----~~~~P~lvPDlDgDgV~DLLv~t~~~~~~~~l~LiSGkTG~~IG~~v~l~~~~~~~~l--t~~ga~yILFgcg 199 (848)
.. ....|+++ ..++|.+...+ +.|..+..+||+++-+ ..++.-..-..+ ...|.+||.+-+|
T Consensus 390 ~~~~g~~~~~~~~~~-------~g~~v~~g~~d---G~l~ald~~tG~~lW~-~~~~~~~~a~P~~~~~~g~~yv~~~~g 458 (488)
T cd00216 390 SWNIGFPHWGGSLAT-------AGNLVFAGAAD---GYFRAFDATTGKELWK-FRTPSGIQATPMTYEVNGKQYVGVMVG 458 (488)
T ss_pred ccccCCcccCcceEe-------cCCeEEEECCC---CeEEEEECCCCceeeE-EECCCCceEcCEEEEeCCEEEEEEEec
Confidence 10 11223321 12566554332 7899999999999776 233311111112 3578889999988
Q ss_pred C
Q psy12259 200 Q 200 (848)
Q Consensus 200 ~ 200 (848)
.
T Consensus 459 ~ 459 (488)
T cd00216 459 G 459 (488)
T ss_pred C
Confidence 7
No 15
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=96.07 E-value=0.054 Score=63.81 Aligned_cols=65 Identities=18% Similarity=0.248 Sum_probs=46.6
Q ss_pred eEEEEeCCCcceeeeeccCCCCCcccc--cceeccCCCCCCc-cceEEEeecCCceeEEEEEeCCCCcccC
Q psy12259 105 YLAVLSQATGNLLWRKTNNGYKDGKMK--FPLIVDDLTGDGV-NDLVLISYMGPSKYQLALLSGSNGVQIG 172 (848)
Q Consensus 105 ~L~AIn~~TG~~lW~~~~~~~~~~~~~--~P~lvPDlDgDgV-~DLLv~t~~~~~~~~l~LiSGkTG~~IG 172 (848)
.+.|+|..|||..|++.....-...++ ++.+|-|++.||- .++++.... .+.+.++-=+||+.|-
T Consensus 272 s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K---~G~~~vlDr~tG~~i~ 339 (527)
T TIGR03075 272 SIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADR---NGFFYVLDRTNGKLLS 339 (527)
T ss_pred eEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCC---CceEEEEECCCCceec
Confidence 789999999999999865433333343 4556778877765 456654333 2899999999999874
No 16
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=95.64 E-value=0.12 Score=57.86 Aligned_cols=96 Identities=20% Similarity=0.335 Sum_probs=63.7
Q ss_pred ccEEEEeCCCCceeeEeecCCCcEEeeecCcccCCCCCccEEEEccCceEEEEeCCCcceeeeeccCCCCCcccccceec
Q psy12259 57 GGLIALDSVRPVELWRKTLNNVPKEVDCGLIDINLDGVLDCIVIADNGYLAVLSQATGNLLWRKTNNGYKDGKMKFPLIV 136 (848)
Q Consensus 57 ~gvlAlsG~nGs~LW~~~l~~ev~~i~C~l~dl~~dg~~dCLl~Gr~g~L~AIn~~TG~~lW~~~~~~~~~~~~~~P~lv 136 (848)
+.+.|++-.+|+++|+++..... .+.-.+...+ +....|.+.|+|..||+.+|+.+.... .....|++.
T Consensus 266 g~l~ald~~tG~~~W~~~~~~~~--------~~~~~~~~vy-~~~~~g~l~ald~~tG~~~W~~~~~~~--~~~~sp~v~ 334 (394)
T PRK11138 266 GNLVALDLRSGQIVWKREYGSVN--------DFAVDGGRIY-LVDQNDRVYALDTRGGVELWSQSDLLH--RLLTAPVLY 334 (394)
T ss_pred CeEEEEECCCCCEEEeecCCCcc--------CcEEECCEEE-EEcCCCeEEEEECCCCcEEEcccccCC--CcccCCEEE
Confidence 57889999999999998754321 1111121233 445677889999999999999764321 235577763
Q ss_pred cCCCCCCccceEEEeecCCceeEEEEEeCCCCcccCCc
Q psy12259 137 DDLTGDGVNDLVLISYMGPSKYQLALLSGSNGVQIGTP 174 (848)
Q Consensus 137 PDlDgDgV~DLLv~t~~~~~~~~l~LiSGkTG~~IG~~ 174 (848)
.+.|++...+ +.+..+.-+||+.+.+.
T Consensus 335 --------~g~l~v~~~~---G~l~~ld~~tG~~~~~~ 361 (394)
T PRK11138 335 --------NGYLVVGDSE---GYLHWINREDGRFVAQQ 361 (394)
T ss_pred --------CCEEEEEeCC---CEEEEEECCCCCEEEEE
Confidence 3445543332 77888999999987763
No 17
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=94.59 E-value=0.22 Score=58.79 Aligned_cols=106 Identities=24% Similarity=0.359 Sum_probs=64.8
Q ss_pred ccEEEEeCCCCceeeEeecCCC--cEEeeec-Cc----ccCCCCCccEEEEccCceEEEEeCCCcceeeeeccCCCC--C
Q psy12259 57 GGLIALDSVRPVELWRKTLNNV--PKEVDCG-LI----DINLDGVLDCIVIADNGYLAVLSQATGNLLWRKTNNGYK--D 127 (848)
Q Consensus 57 ~gvlAlsG~nGs~LW~~~l~~e--v~~i~C~-l~----dl~~dg~~dCLl~Gr~g~L~AIn~~TG~~lW~~~~~~~~--~ 127 (848)
+.|.||+..+|+++|+...... .....|. .. -+. ++ --++....|.|.|+|..||+.+|+....... .
T Consensus 79 g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~-~~--~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~ 155 (527)
T TIGR03075 79 SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY-DG--KVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGY 155 (527)
T ss_pred CcEEEEECCCCceeeEecCCCCcccccccccccccccceEE-CC--EEEEEcCCCEEEEEECCCCCEEeecccccccccc
Confidence 4789999999999999876432 2222232 11 111 11 2344455788999999999999998653221 1
Q ss_pred cccccceeccCCCCCCccceEEEeecCCc---eeEEEEEeCCCCcccCC
Q psy12259 128 GKMKFPLIVDDLTGDGVNDLVLISYMGPS---KYQLALLSGSNGVQIGT 173 (848)
Q Consensus 128 ~~~~~P~lvPDlDgDgV~DLLv~t~~~~~---~~~l~LiSGkTG~~IG~ 173 (848)
.....|++. .|.+++.....+ .+.+.-+.=.||+++=+
T Consensus 156 ~~tssP~v~--------~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~ 196 (527)
T TIGR03075 156 TITAAPLVV--------KGKVITGISGGEFGVRGYVTAYDAKTGKLVWR 196 (527)
T ss_pred cccCCcEEE--------CCEEEEeecccccCCCcEEEEEECCCCceeEe
Confidence 123467763 234555332111 36788888899988543
No 18
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=94.14 E-value=0.33 Score=53.54 Aligned_cols=97 Identities=29% Similarity=0.422 Sum_probs=60.6
Q ss_pred ccEEEEeCCCCceeeEeecCCCcEEeeecCcccCCCCCccEEEEccCceEEEEeCCCcceeeeeccCCCC--Ccccccce
Q psy12259 57 GGLIALDSVRPVELWRKTLNNVPKEVDCGLIDINLDGVLDCIVIADNGYLAVLSQATGNLLWRKTNNGYK--DGKMKFPL 134 (848)
Q Consensus 57 ~gvlAlsG~nGs~LW~~~l~~ev~~i~C~l~dl~~dg~~dCLl~Gr~g~L~AIn~~TG~~lW~~~~~~~~--~~~~~~P~ 134 (848)
+.|.|++-.+|+++|+..+..++ .+... +. ++ -.++....|.|.|+|..||+.+|+++..... ......|+
T Consensus 115 g~l~ald~~tG~~~W~~~~~~~~---~~~p~-v~-~~--~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~ 187 (377)
T TIGR03300 115 GEVIALDAEDGKELWRAKLSSEV---LSPPL-VA-NG--LVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPV 187 (377)
T ss_pred CEEEEEECCCCcEeeeeccCcee---ecCCE-EE-CC--EEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCE
Confidence 46778888899999999877653 34422 22 11 3455566788999999999999998654211 11123555
Q ss_pred eccCCCCCCccceEEEeecCCceeEEEEEeCCCCccc
Q psy12259 135 IVDDLTGDGVNDLVLISYMGPSKYQLALLSGSNGVQI 171 (848)
Q Consensus 135 lvPDlDgDgV~DLLv~t~~~~~~~~l~LiSGkTG~~I 171 (848)
+. + |.+++...+ +.+.-++=+||+.+
T Consensus 188 ~~----~----~~v~~~~~~---g~v~ald~~tG~~~ 213 (377)
T TIGR03300 188 IA----D----GGVLVGFAG---GKLVALDLQTGQPL 213 (377)
T ss_pred EE----C----CEEEEECCC---CEEEEEEccCCCEe
Confidence 42 1 244443332 56777777788654
No 19
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=93.85 E-value=0.45 Score=58.80 Aligned_cols=114 Identities=19% Similarity=0.106 Sum_probs=67.8
Q ss_pred ccEEEEeCCCCceeeEeecCCC---------cEEe------------eec--Ccc-cCCCCCccEEEEcc-------Cce
Q psy12259 57 GGLIALDSVRPVELWRKTLNNV---------PKEV------------DCG--LID-INLDGVLDCIVIAD-------NGY 105 (848)
Q Consensus 57 ~gvlAlsG~nGs~LW~~~l~~e---------v~~i------------~C~--l~d-l~~dg~~dCLl~Gr-------~g~ 105 (848)
|.|.|++-.+|+.+|...+.+. -.+. +-. +.- ..++..||-.-..| .+.
T Consensus 336 G~I~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~s 415 (764)
T TIGR03074 336 GVIRAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSS 415 (764)
T ss_pred cEEEEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccce
Confidence 6899999999999998764311 0111 000 000 00122333222222 467
Q ss_pred EEEEeCCCcceeeeeccCCCCCcccc--cceeccCCCC-CC-ccceEEEeecCCceeEEEEEeCCCCcccCC
Q psy12259 106 LAVLSQATGNLLWRKTNNGYKDGKMK--FPLIVDDLTG-DG-VNDLVLISYMGPSKYQLALLSGSNGVQIGT 173 (848)
Q Consensus 106 L~AIn~~TG~~lW~~~~~~~~~~~~~--~P~lvPDlDg-Dg-V~DLLv~t~~~~~~~~l~LiSGkTG~~IG~ 173 (848)
+.|+|..|||..|++...+.....++ ++-++-|+.. || ..++++.... .+.+..+--+||+.|-.
T Consensus 416 lvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K---~G~~~vlDr~tG~~l~~ 484 (764)
T TIGR03074 416 LVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTK---QGQIYVLDRRTGEPIVP 484 (764)
T ss_pred EEEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECC---CCEEEEEECCCCCEEee
Confidence 89999999999999865433233333 3334556644 66 4555544332 28899999999999865
No 20
>PF13517 VCBS: Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella; PDB: 2C25_A 2BWR_B 2C4D_A 2BWM_A.
Probab=93.29 E-value=0.2 Score=41.50 Aligned_cols=59 Identities=24% Similarity=0.423 Sum_probs=31.3
Q ss_pred ccCCCCCccEEEEccCceEEEEeCCCcc--eeeeeccCCCCCcccccceeccCCCCCCccceEE
Q psy12259 88 DINLDGVLDCIVIADNGYLAVLSQATGN--LLWRKTNNGYKDGKMKFPLIVDDLTGDGVNDLVL 149 (848)
Q Consensus 88 dl~~dg~~dCLl~Gr~g~L~AIn~~TG~--~lW~~~~~~~~~~~~~~P~lvPDlDgDgV~DLLv 149 (848)
|+++||.+|-++++..+.....+.-.|+ ..|... ........++.+-|+|+||.+||+|
T Consensus 1 D~ngDG~~Div~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~D~d~DG~~Di~V 61 (61)
T PF13517_consen 1 DFNGDGRPDIVVANDGSVYVYLNDGDGTFQFPAQIP---FSSSGSGWSVAFADIDGDGKPDILV 61 (61)
T ss_dssp -SSSSSS-EEEEE-SSSEEEEEB-SSS-BEEEEEEB---TTCSGGTTTTCEE-SSSSSS-EEE-
T ss_pred CCCCCCCccEEEEeCCCeEEEEECCCCCeEEeeeEe---eCCCCCcceeEEEEccCCCcccEEC
Confidence 5678999999999866554444443343 222221 1111222345599999999999986
No 21
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=91.93 E-value=1 Score=55.74 Aligned_cols=107 Identities=20% Similarity=0.191 Sum_probs=65.0
Q ss_pred ccEEEEeCCCCceeeEeecCCCcE----EeeecCcccCCC---------------CCccEEEEccCceEEEEeCCCccee
Q psy12259 57 GGLIALDSVRPVELWRKTLNNVPK----EVDCGLIDINLD---------------GVLDCIVIADNGYLAVLSQATGNLL 117 (848)
Q Consensus 57 ~gvlAlsG~nGs~LW~~~l~~ev~----~i~C~l~dl~~d---------------g~~dCLl~Gr~g~L~AIn~~TG~~l 117 (848)
+.|+||+..+|+.+|+........ ...|...-.-.+ ...-.++....|-|.|+|..||+.+
T Consensus 204 ~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiALDA~TGk~~ 283 (764)
T TIGR03074 204 NKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIALDADTGKLC 283 (764)
T ss_pred CeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEEEECCCCCEE
Confidence 579999999999999987654422 234543221110 0113455567888999999999999
Q ss_pred eeeccCCCC----------C---cccccceeccCCCCCCccceEEEeec-CCc------eeEEEEEeCCCCccc
Q psy12259 118 WRKTNNGYK----------D---GKMKFPLIVDDLTGDGVNDLVLISYM-GPS------KYQLALLSGSNGVQI 171 (848)
Q Consensus 118 W~~~~~~~~----------~---~~~~~P~lvPDlDgDgV~DLLv~t~~-~~~------~~~l~LiSGkTG~~I 171 (848)
|.+...+.. . .....|+|. .|++++... .+. .+.+.-+.=+||+++
T Consensus 284 W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~--------~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~ 349 (764)
T TIGR03074 284 EDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVA--------GTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALV 349 (764)
T ss_pred EEecCCCceeeecccCcCCCcccccccCCEEE--------CCEEEEEecccccccccCCCcEEEEEECCCCcEe
Confidence 998543210 0 012356663 356665321 111 267777888888773
No 22
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=90.25 E-value=0.4 Score=34.90 Aligned_cols=26 Identities=31% Similarity=0.524 Sum_probs=22.3
Q ss_pred cEEEEccCceEEEEeCCCcceeeeec
Q psy12259 96 DCIVIADNGYLAVLSQATGNLLWRKT 121 (848)
Q Consensus 96 dCLl~Gr~g~L~AIn~~TG~~lW~~~ 121 (848)
-+++....|.|.|+|..||+.+|+.+
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W~~~ 33 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILWTYK 33 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEEEcC
Confidence 36677778999999999999999853
No 23
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=90.25 E-value=0.51 Score=36.28 Aligned_cols=25 Identities=36% Similarity=0.686 Sum_probs=21.5
Q ss_pred EEccCceEEEEeCCCcceeeeeccC
Q psy12259 99 VIADNGYLAVLSQATGNLLWRKTNN 123 (848)
Q Consensus 99 l~Gr~g~L~AIn~~TG~~lW~~~~~ 123 (848)
+....|.+.|+|..||+.+|++...
T Consensus 5 ~~~~~g~l~AlD~~TG~~~W~~~~~ 29 (38)
T PF01011_consen 5 VGTPDGYLYALDAKTGKVLWKFQTG 29 (38)
T ss_dssp EETTTSEEEEEETTTTSEEEEEESS
T ss_pred EeCCCCEEEEEECCCCCEEEeeeCC
Confidence 4467789999999999999998765
No 24
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=85.21 E-value=4.5 Score=45.10 Aligned_cols=98 Identities=24% Similarity=0.393 Sum_probs=65.4
Q ss_pred ccEEEEeCCCCceeeEeecCCCcEEeeecCcccCCCCCccEEEEccCceEEEEeCCCcceeeeeccCCCCCcccccceec
Q psy12259 57 GGLIALDSVRPVELWRKTLNNVPKEVDCGLIDINLDGVLDCIVIADNGYLAVLSQATGNLLWRKTNNGYKDGKMKFPLIV 136 (848)
Q Consensus 57 ~gvlAlsG~nGs~LW~~~l~~ev~~i~C~l~dl~~dg~~dCLl~Gr~g~L~AIn~~TG~~lW~~~~~~~~~~~~~~P~lv 136 (848)
|.+.|++..+|.++|...+......+.+....- +|. -++....|.+.|+|..||+.+|+++... . ..+..|.+
T Consensus 78 G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~--~G~--i~~g~~~g~~y~ld~~~G~~~W~~~~~~-~-~~~~~~~v- 150 (370)
T COG1520 78 GNIFALNPDTGLVKWSYPLLGAVAQLSGPILGS--DGK--IYVGSWDGKLYALDASTGTLVWSRNVGG-S-PYYASPPV- 150 (370)
T ss_pred CcEEEEeCCCCcEEecccCcCcceeccCceEEe--CCe--EEEecccceEEEEECCCCcEEEEEecCC-C-eEEecCcE-
Confidence 368999999999999998887444555553333 443 3344555669999999999999988765 1 11223322
Q ss_pred cCCCCCCccceEEEeecCCceeEEEEEeCCCCcc
Q psy12259 137 DDLTGDGVNDLVLISYMGPSKYQLALLSGSNGVQ 170 (848)
Q Consensus 137 PDlDgDgV~DLLv~t~~~~~~~~l~LiSGkTG~~ 170 (848)
-+|| ++.+.. + .+++.-+...||.+
T Consensus 151 ---~~~~---~v~~~s-~--~g~~~al~~~tG~~ 175 (370)
T COG1520 151 ---VGDG---TVYVGT-D--DGHLYALNADTGTL 175 (370)
T ss_pred ---EcCc---EEEEec-C--CCeEEEEEccCCcE
Confidence 2232 233322 2 27899999999998
No 25
>KOG3637|consensus
Probab=83.87 E-value=2 Score=54.85 Aligned_cols=87 Identities=22% Similarity=0.318 Sum_probs=55.1
Q ss_pred EeeecCcccCCCCCccEEEEccCceEEEEeCCCccee---------eeeccC-CC--C-Cccccccee-ccCCCCCCccc
Q psy12259 81 EVDCGLIDINLDGVLDCIVIADNGYLAVLSQATGNLL---------WRKTNN-GY--K-DGKMKFPLI-VDDLTGDGVND 146 (848)
Q Consensus 81 ~i~C~l~dl~~dg~~dCLl~Gr~g~L~AIn~~TG~~l---------W~~~~~-~~--~-~~~~~~P~l-vPDlDgDgV~D 146 (848)
+--|. .|+|+||..| ||+|-+-..---...-|.+. |..... .+ . -+.+=+.+- |.|||+||.+|
T Consensus 325 ~sl~~-vDlNgDG~tD-LLVGAP~y~~~~~~e~GrVYVy~~~~~~~~~~~~~L~~~~~~~~RFG~Ala~LGDlN~DG~nD 402 (1030)
T KOG3637|consen 325 YSLAA-VDLNGDGLTD-LLVGAPLYFERDRYEVGRVYVYLNGGLGLFPEQITLRGPGGPSGRFGSALAALGDLNQDGYND 402 (1030)
T ss_pred eeEEE-EEcCCCCCcc-eEEecCccccCCCCcceEEEEEEecCCCCcccceeEecCCCcccchhhhhhcccCcccCCCCc
Confidence 44577 8999999999 99998865432111223332 222211 00 0 111223333 89999999999
Q ss_pred eEEEee-cCCceeEEEEEeCCCCc
Q psy12259 147 LVLISY-MGPSKYQLALLSGSNGV 169 (848)
Q Consensus 147 LLv~t~-~~~~~~~l~LiSGkTG~ 169 (848)
++|-+- ++++++..+|+=|..|-
T Consensus 403 VAVGAP~eg~~~GaVYIy~Gs~~G 426 (1030)
T KOG3637|consen 403 VAVGAPFEGDNQGAVYIYHGSKGG 426 (1030)
T ss_pred eEEeCCcCCCCCceEEEEcCCCCC
Confidence 999877 44446889999998883
No 26
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=80.63 E-value=4.2 Score=45.30 Aligned_cols=107 Identities=20% Similarity=0.197 Sum_probs=62.5
Q ss_pred cEEEEeCCCCceeeEeecCCC--------cEEeeecCcccCCCCCccEEEEccCceEEEEeCCCcceeeeeccCCCCCcc
Q psy12259 58 GLIALDSVRPVELWRKTLNNV--------PKEVDCGLIDINLDGVLDCIVIADNGYLAVLSQATGNLLWRKTNNGYKDGK 129 (848)
Q Consensus 58 gvlAlsG~nGs~LW~~~l~~e--------v~~i~C~l~dl~~dg~~dCLl~Gr~g~L~AIn~~TG~~lW~~~~~~~~~~~ 129 (848)
.+.|++-.+|...|+...... ...+.++.+..++ .+......|-+.++|..+|+.+|+.+.+ . ..
T Consensus 210 ~~~a~~~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~----~~~~~~~~g~~~~l~~~~G~~~W~~~~~-~--~~ 282 (370)
T COG1520 210 ILYALNAEDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDG----GVYAGSYGGKLLCLDADTGELIWSFPAG-G--SV 282 (370)
T ss_pred eEEEEEccCCcEeeeeeeecccCcccccccccccCceEEECC----cEEEEecCCeEEEEEcCCCceEEEEecc-c--Ee
Confidence 589999999999999543322 2355566555542 2233444444788999999999999876 1 11
Q ss_pred ccccee-ccCCCCCCccceEEEeecCCceeEEEEEeCCCCccc
Q psy12259 130 MKFPLI-VDDLTGDGVNDLVLISYMGPSKYQLALLSGSNGVQI 171 (848)
Q Consensus 130 ~~~P~l-vPDlDgDgV~DLLv~t~~~~~~~~l~LiSGkTG~~I 171 (848)
-..|++ .+..++||..=+..-.........++.++..+|..+
T Consensus 283 ~~~~~~~~~~~~~dG~v~~~~~~~~~~~~~~~~~~~~~~g~~~ 325 (370)
T COG1520 283 QGSGLYTTPVAGADGKVYIGFTDNDGRGSGSLYALADVPGGTL 325 (370)
T ss_pred ccCCeeEEeecCCCccEEEEEeccccccccceEEEeccCCCee
Confidence 236666 565556765322221111101145566666666554
No 27
>PF01839 FG-GAP: FG-GAP repeat; InterPro: IPR013517 This region contains the extracellular repeat that is found in up to seven copies in alpha integrins. This repeat has been predicted to fold into a beta propeller structure []. The repeat is called the FG-GAP repeat after two conserved motifs in the repeat []. The FG-GAP repeats are found in the N terminus of integrin alpha chains, a region that has been shown to be important for ligand binding []. A putative Ca2+ binding motif is found in some of the repeats. ; PDB: 1L5G_A 3IJE_A 1M1X_A 1JV2_A 1U8C_A 3V4P_C 3V4V_C 3VI3_A 3VI4_C 2VDN_A ....
Probab=73.74 E-value=1.9 Score=33.12 Aligned_cols=15 Identities=47% Similarity=0.795 Sum_probs=12.6
Q ss_pred ccCCCCCCccceEEE
Q psy12259 136 VDDLTGDGVNDLVLI 150 (848)
Q Consensus 136 vPDlDgDgV~DLLv~ 150 (848)
+-|+||||.+||++.
T Consensus 7 ~gD~ngDG~~Dl~vg 21 (34)
T PF01839_consen 7 VGDFNGDGYDDLAVG 21 (34)
T ss_dssp EESTSSSSS-EEEEE
T ss_pred EEEcCCCCCccEEEE
Confidence 559999999999986
No 28
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=72.97 E-value=6.2 Score=43.67 Aligned_cols=64 Identities=16% Similarity=0.241 Sum_probs=41.3
Q ss_pred ceEEEEeCCCcceeeeeccC-CCC-Cccc--ccce-------------e-ccCCCCCCccceEEEeecCCceeEEEEEeC
Q psy12259 104 GYLAVLSQATGNLLWRKTNN-GYK-DGKM--KFPL-------------I-VDDLTGDGVNDLVLISYMGPSKYQLALLSG 165 (848)
Q Consensus 104 g~L~AIn~~TG~~lW~~~~~-~~~-~~~~--~~P~-------------l-vPDlDgDgV~DLLv~t~~~~~~~~l~LiSG 165 (848)
+.+.-||..||+++|+-... +.. +... ..|+ + +=+++.|+-.|+||.++.- ..+++|++
T Consensus 96 ~~~~EiDi~TgevlfeW~a~DH~~~~~~~~~~~~~~~~g~~~~~~~D~~HiNsV~~~~~G~yLiS~R~~---~~i~~I~~ 172 (299)
T PF14269_consen 96 DVFQEIDIETGEVLFEWSASDHVDPNDSYDSQDPLPGSGGSSSFPWDYFHINSVDKDDDGDYLISSRNT---STIYKIDP 172 (299)
T ss_pred ceeEEeccCCCCEEEEEEhhheecccccccccccccCCCcCCCCCCCccEeeeeeecCCccEEEEeccc---CEEEEEEC
Confidence 45677999999999997543 221 1111 0111 1 4445555555888876654 57999999
Q ss_pred CCCcc
Q psy12259 166 SNGVQ 170 (848)
Q Consensus 166 kTG~~ 170 (848)
+||++
T Consensus 173 ~tG~I 177 (299)
T PF14269_consen 173 STGKI 177 (299)
T ss_pred CCCcE
Confidence 99987
No 29
>PF01839 FG-GAP: FG-GAP repeat; InterPro: IPR013517 This region contains the extracellular repeat that is found in up to seven copies in alpha integrins. This repeat has been predicted to fold into a beta propeller structure []. The repeat is called the FG-GAP repeat after two conserved motifs in the repeat []. The FG-GAP repeats are found in the N terminus of integrin alpha chains, a region that has been shown to be important for ligand binding []. A putative Ca2+ binding motif is found in some of the repeats. ; PDB: 1L5G_A 3IJE_A 1M1X_A 1JV2_A 1U8C_A 3V4P_C 3V4V_C 3VI3_A 3VI4_C 2VDN_A ....
Probab=70.70 E-value=3 Score=32.02 Aligned_cols=19 Identities=32% Similarity=0.426 Sum_probs=15.8
Q ss_pred cceEEEecCCCCCcceEEE
Q psy12259 392 YSLLLADLDKDGSQDLISY 410 (848)
Q Consensus 392 ~s~~~~~ld~d~~~elisy 410 (848)
+|+.++|+|+||.++|+-=
T Consensus 3 ~~~~~gD~ngDG~~Dl~vg 21 (34)
T PF01839_consen 3 SSVAVGDFNGDGYDDLAVG 21 (34)
T ss_dssp SCEEEESTSSSSS-EEEEE
T ss_pred cccEEEEcCCCCCccEEEE
Confidence 5889999999999999943
No 30
>KOG4649|consensus
Probab=67.91 E-value=15 Score=40.77 Aligned_cols=70 Identities=20% Similarity=0.346 Sum_probs=47.8
Q ss_pred CccEEEEccCceEEEEeCCCcceeeeeccCCCCCcccc-cceeccCCCCCCccceEEEeecCCceeEEEEEeCCCCcccC
Q psy12259 94 VLDCIVIADNGYLAVLSQATGNLLWRKTNNGYKDGKMK-FPLIVDDLTGDGVNDLVLISYMGPSKYQLALLSGSNGVQIG 172 (848)
Q Consensus 94 ~~dCLl~Gr~g~L~AIn~~TG~~lW~~~~~~~~~~~~~-~P~lvPDlDgDgV~DLLv~t~~~~~~~~l~LiSGkTG~~IG 172 (848)
+.-.++...++.+.|||+.||+.+|+.--.. + +. +|.+ |.|.+|+---. +.|+++-=+||.|+=
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~ilg~-R---iE~sa~v--------vgdfVV~GCy~---g~lYfl~~~tGs~~w 87 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILGV-R---IECSAIV--------VGDFVVLGCYS---GGLYFLCVKTGSQIW 87 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhhCc-e---eeeeeEE--------ECCEEEEEEcc---CcEEEEEecchhhee
Confidence 3445555677889999999999999954221 1 33 4555 66776663332 679999999998876
Q ss_pred CccccC
Q psy12259 173 TPLVKE 178 (848)
Q Consensus 173 ~~v~l~ 178 (848)
.-+.++
T Consensus 88 ~f~~~~ 93 (354)
T KOG4649|consen 88 NFVILE 93 (354)
T ss_pred eeeehh
Confidence 554444
No 31
>smart00191 Int_alpha Integrin alpha (beta-propellor repeats). Integrins are cell adhesion molecules that mediate cell-extracellular matrix and cell-cell interactions. They contain both alpha and beta subunits. Alpha integrins are proposed to contain a domain containing a 7-fold repeat that adopts a beta-propellor fold. Some of these domains contain an inserted von Willebrand factor type-A domain. Some repeats contain putative calcium-binding sites. The 7-fold repeat domain is homologous to a similar domain in phosphatidylinositol-glycan-specific phospholipase D.
Probab=67.15 E-value=6.2 Score=32.99 Aligned_cols=32 Identities=28% Similarity=0.364 Sum_probs=22.6
Q ss_pred ccCCCCCCccceEEEeecCCc---eeEEEEEeCCC
Q psy12259 136 VDDLTGDGVNDLVLISYMGPS---KYQLALLSGSN 167 (848)
Q Consensus 136 vPDlDgDgV~DLLv~t~~~~~---~~~l~LiSGkT 167 (848)
+-|+|+||..||+|-+..... .+.+.++.|..
T Consensus 12 ~~d~ngDg~~dl~vGAP~~~~~~~~G~vy~~~~~~ 46 (58)
T smart00191 12 VGDVNGDGYPDLLVGAPRANDAGETGAVYVYFGSS 46 (58)
T ss_pred ccccCCCCccCEEEeCcccCCCCCCCEEEEEEecC
Confidence 789999999998887765432 25555555543
No 32
>COG4993 Gcd Glucose dehydrogenase [Carbohydrate transport and metabolism]
Probab=62.89 E-value=27 Score=42.59 Aligned_cols=135 Identities=19% Similarity=0.173 Sum_probs=75.2
Q ss_pred cEEEEeCCCCceeeEeecCCCcEEeeecCcccCCCCCccEEEEccCceEEEEeCCCcceeeeeccCCCCCcc-ccccee-
Q psy12259 58 GLIALDSVRPVELWRKTLNNVPKEVDCGLIDINLDGVLDCIVIADNGYLAVLSQATGNLLWRKTNNGYKDGK-MKFPLI- 135 (848)
Q Consensus 58 gvlAlsG~nGs~LW~~~l~~ev~~i~C~l~dl~~dg~~dCLl~Gr~g~L~AIn~~TG~~lW~~~~~~~~~~~-~~~P~l- 135 (848)
...+-.|+.|.+.|+....-. +--+ .=+... .--|-..+ -|.++|+|.+|||.+|.+..-+....+ +-.|+-
T Consensus 613 ~g~~~~g~e~gv~~~~g~Py~---V~~g-pflsp~-glpcqap~-wGyv~a~DlkTgk~~wk~~~gt~~d~~p~plp~~~ 686 (773)
T COG4993 613 NGAAGDGTEGGVVPNYGEPYG---VWMG-PFLSPG-GLPCQAPP-WGYVKAIDLKTGKELWKHRNGTVYDMTPVPLPFKV 686 (773)
T ss_pred cccccCCcccccccCCCCcce---eeec-cccCCc-CcccccCC-cceeeeeeccccceeeeccCCccccCcccCccccc
Confidence 357888999999998765543 3222 111111 13454433 457899999999999997543221100 112222
Q ss_pred -ccCCCCC--CccceEEEeecCCceeEEEEEeCCCCcccCCccccC--CcccccCccccCCcEEEEEccC
Q psy12259 136 -VDDLTGD--GVNDLVLISYMGPSKYQLALLSGSNGVQIGTPLVKE--DCDQMTGLNLTSPDTVIYVCVQ 200 (848)
Q Consensus 136 -vPDlDgD--gV~DLLv~t~~~~~~~~l~LiSGkTG~~IG~~v~l~--~~~~~~~lt~~ga~yILFgcg~ 200 (848)
+|-+-|- -+.-++.++... ...|..++|.+|+++=...-+- .-+++...-..|.+||++.-|+
T Consensus 687 g~pt~Ggp~~t~Ggv~f~a~~~--dqYLrayd~~~G~~lW~arlpaGGq~tPmty~v~~GkqYvvi~agg 754 (773)
T COG4993 687 GFPTLGGPIGTAGGVAFIAATG--DQYLRAYDGTGGKQLWQARLPAGGQATPMTYTVAGGKQYVVISAGG 754 (773)
T ss_pred ccccCCCccccccceEEEecch--heeeeeeeccCCceeeeeccccCCcCCCceeecCCCceEEEEEcCC
Confidence 5555432 123344444433 2689999999998864321111 1112211224557899998876
No 33
>PF13517 VCBS: Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella; PDB: 2C25_A 2BWR_B 2C4D_A 2BWM_A.
Probab=62.48 E-value=7.3 Score=32.19 Aligned_cols=25 Identities=36% Similarity=0.582 Sum_probs=16.2
Q ss_pred CCCCCCccceEEEeecCCceeEEEEEeC
Q psy12259 138 DLTGDGVNDLVLISYMGPSKYQLALLSG 165 (848)
Q Consensus 138 DlDgDgV~DLLv~t~~~~~~~~l~LiSG 165 (848)
|+||||-+||++.. .. ...+.+..|
T Consensus 1 D~ngDG~~Div~~~-~~--~~~~~~~~~ 25 (61)
T PF13517_consen 1 DFNGDGRPDIVVAN-DG--SVYVYLNDG 25 (61)
T ss_dssp -SSSSSS-EEEEE--SS--SEEEEEB-S
T ss_pred CCCCCCCccEEEEe-CC--CeEEEEECC
Confidence 89999999999985 22 366766665
No 34
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=53.37 E-value=19 Score=27.63 Aligned_cols=23 Identities=30% Similarity=0.365 Sum_probs=20.2
Q ss_pred cccEEEEeCCCCceeeEeecCCC
Q psy12259 56 GGGLIALDSVRPVELWRKTLNNV 78 (848)
Q Consensus 56 ~~gvlAlsG~nGs~LW~~~l~~e 78 (848)
.|.|.|++-.+|+.+|+......
T Consensus 9 ~g~l~AlD~~TG~~~W~~~~~~~ 31 (38)
T PF01011_consen 9 DGYLYALDAKTGKVLWKFQTGPP 31 (38)
T ss_dssp TSEEEEEETTTTSEEEEEESSSG
T ss_pred CCEEEEEECCCCCEEEeeeCCCC
Confidence 47999999999999999987655
No 35
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=53.05 E-value=29 Score=26.63 Aligned_cols=40 Identities=23% Similarity=0.256 Sum_probs=23.1
Q ss_pred CceeeEeecCCCcEEeeecCcccCCCCCccEEEEccCceEEEEeCCC
Q psy12259 67 PVELWRKTLNNVPKEVDCGLIDINLDGVLDCIVIADNGYLAVLSQAT 113 (848)
Q Consensus 67 Gs~LW~~~l~~ev~~i~C~l~dl~~dg~~dCLl~Gr~g~L~AIn~~T 113 (848)
|+++|+.++... +.++ +-+. ++ -..+.+..|-+.|+|..|
T Consensus 1 G~~~W~~~~~~~---~~~~-~~v~-~g--~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 1 GKVLWSYDTGGP---IWSS-PAVA-GG--RVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp S-EEEEEE-SS------S---EEC-TS--EEEEE-TTSEEEEEETT-
T ss_pred CceeEEEECCCC---cCcC-CEEE-CC--EEEEEcCCCEEEEEeCCC
Confidence 789999998764 3455 3333 22 466777789999999865
No 36
>COG4993 Gcd Glucose dehydrogenase [Carbohydrate transport and metabolism]
Probab=50.76 E-value=57 Score=40.01 Aligned_cols=71 Identities=27% Similarity=0.507 Sum_probs=46.4
Q ss_pred CCccccEEEEeCCCCceeeEee----cCCCcEEeeecCcccCC---CCCccE---EEE-ccCceEEEEeCCCcceeeeec
Q psy12259 53 PPTGGGLIALDSVRPVELWRKT----LNNVPKEVDCGLIDINL---DGVLDC---IVI-ADNGYLAVLSQATGNLLWRKT 121 (848)
Q Consensus 53 sPc~~gvlAlsG~nGs~LW~~~----l~~ev~~i~C~l~dl~~---dg~~dC---Ll~-Gr~g~L~AIn~~TG~~lW~~~ 121 (848)
+|- +.++||+...|+..|.-. ....+.-.-|....-.. +...-| |+. -...-|.|+|..|||+.|.|.
T Consensus 221 Tph-n~v~ALDa~TGkekWkydp~~~~nv~~~~~tCrgVsy~~a~a~~k~pc~~rIflpt~DarlIALdA~tGkvc~~Fa 299 (773)
T COG4993 221 TPH-NRVFALDAATGKEKWKYDPNLKSNVDPQHQTCRGVSYGAAKADAKSPCPRRIFLPTADARLIALDADTGKVCWSFA 299 (773)
T ss_pred cCc-ceeEEeeccCCceeeecCCCCCCCcccccccccceecccccccccCCCceeEEeecCCceEEEEeCCCCcEeheec
Confidence 344 589999999999999533 23333333477533222 111224 555 456778999999999999986
Q ss_pred cCC
Q psy12259 122 NNG 124 (848)
Q Consensus 122 ~~~ 124 (848)
..+
T Consensus 300 ~~G 302 (773)
T COG4993 300 NKG 302 (773)
T ss_pred cCc
Confidence 653
No 37
>PF05567 Neisseria_PilC: Neisseria PilC beta-propeller domain; InterPro: IPR008707 This domain is found in several PilC protein sequences from Neisseria gonorrhoeae and Neisseria meningitidis. PilC is a phase-variable protein associated with pilus-mediated adherence of pathogenic Neisseria to target cells [].; PDB: 3HX6_A.
Probab=49.00 E-value=66 Score=36.33 Aligned_cols=45 Identities=33% Similarity=0.403 Sum_probs=27.4
Q ss_pred ceEEEEeCCC-cceeeeeccCCCCCcccccceeccCCCCCCccceEEE
Q psy12259 104 GYLAVLSQAT-GNLLWRKTNNGYKDGKMKFPLIVDDLTGDGVNDLVLI 150 (848)
Q Consensus 104 g~L~AIn~~T-G~~lW~~~~~~~~~~~~~~P~lvPDlDgDgV~DLLv~ 150 (848)
+-|-.+|..| |+.+|.+...... .-+..|. +=|.|+||+.|.+-+
T Consensus 181 ~~lyi~d~~t~G~l~~~i~~~~~~-~gl~~~~-~~D~d~DG~~D~vYa 226 (335)
T PF05567_consen 181 AALYILDADTTGALIKKIDVPGGS-GGLSSPA-VVDSDGDGYVDRVYA 226 (335)
T ss_dssp EEEEEEETTT---EEEEEEE--ST-T-EEEEE-EE-TTSSSEE-EEEE
T ss_pred cEEEEEECCCCCceEEEEecCCCC-ccccccE-EEeccCCCeEEEEEE
Confidence 4467789999 9999998754321 1244454 449999999999864
No 38
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=38.44 E-value=29 Score=25.04 Aligned_cols=17 Identities=41% Similarity=0.565 Sum_probs=15.6
Q ss_pred ccEEEEeCCCCceeeEe
Q psy12259 57 GGLIALDSVRPVELWRK 73 (848)
Q Consensus 57 ~gvlAlsG~nGs~LW~~ 73 (848)
+.+.|++..+|+++|+.
T Consensus 16 g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 16 GTLYALDAKTGEILWTY 32 (33)
T ss_pred CEEEEEEcccCcEEEEc
Confidence 68999999999999985
No 39
>KOG2110|consensus
Probab=30.80 E-value=3.1e+02 Score=31.94 Aligned_cols=92 Identities=16% Similarity=0.272 Sum_probs=62.9
Q ss_pred eeCCeEEEEecCccccccccccCC----CCCCCccccEEEEeCCC-------------Cce-eeEeecCCCcEEeeecCc
Q psy12259 26 IARDKLLFMMRSPIFERRQMSLRS----GQPPPTGGGLIALDSVR-------------PVE-LWRKTLNNVPKEVDCGLI 87 (848)
Q Consensus 26 v~~d~viFl~k~~~~~~n~sc~~~----G~~sPc~~gvlAlsG~n-------------Gs~-LW~~~l~~ev~~i~C~l~ 87 (848)
.|++.++.++...+|.++..|+.. ....|=..||.|+|=.+ |++ ||..-....+..|+|.
T Consensus 95 mNr~RLvV~Lee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH-- 172 (391)
T KOG2110|consen 95 MNRKRLVVCLEESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAH-- 172 (391)
T ss_pred EccceEEEEEcccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEec--
Confidence 456888888888888777666441 01112222566665444 555 7887777888889988
Q ss_pred ccCCCCCccEEEEccCceEEEEeCCCcceeeeeccC
Q psy12259 88 DINLDGVLDCIVIADNGYLAVLSQATGNLLWRKTNN 123 (848)
Q Consensus 88 dl~~dg~~dCLl~Gr~g~L~AIn~~TG~~lW~~~~~ 123 (848)
++.-+||.....|.|.|==+--|++|=-+..+
T Consensus 173 ----~~~lAalafs~~G~llATASeKGTVIRVf~v~ 204 (391)
T KOG2110|consen 173 ----KGPLAALAFSPDGTLLATASEKGTVIRVFSVP 204 (391)
T ss_pred ----CCceeEEEECCCCCEEEEeccCceEEEEEEcC
Confidence 77789999998888887555567777666544
No 40
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=29.88 E-value=5.3e+02 Score=25.06 Aligned_cols=102 Identities=15% Similarity=0.099 Sum_probs=54.6
Q ss_pred cEEEEeCCCCce-eeEeecCCCcEEeeecC-----cccCCCCCccEEEEcc-CceEEEEeCCCcceeeeeccCCCCCccc
Q psy12259 58 GLIALDSVRPVE-LWRKTLNNVPKEVDCGL-----IDINLDGVLDCIVIAD-NGYLAVLSQATGNLLWRKTNNGYKDGKM 130 (848)
Q Consensus 58 gvlAlsG~nGs~-LW~~~l~~ev~~i~C~l-----~dl~~dg~~dCLl~Gr-~g~L~AIn~~TG~~lW~~~~~~~~~~~~ 130 (848)
..++..|.+|.+ +|.......+..+.... .....+ ...+++|. .|.+...|..+|+.+..+..+.. .+
T Consensus 64 ~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~---~i 138 (289)
T cd00200 64 TYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPD--GRILSSSSRDKTIKVWDVETGKCLTTLRGHTD---WV 138 (289)
T ss_pred CEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCC--CCEEEEecCCCeEEEEECCCcEEEEEeccCCC---cE
Confidence 467777778876 78766533333332211 111111 24556555 77777888877887777653321 12
Q ss_pred ccceeccCCCCCCccceEEEeecCCceeEEEEEeCCCCcccCC
Q psy12259 131 KFPLIVDDLTGDGVNDLVLISYMGPSKYQLALLSGSNGVQIGT 173 (848)
Q Consensus 131 ~~P~lvPDlDgDgV~DLLv~t~~~~~~~~l~LiSGkTG~~IG~ 173 (848)
..-.+-|| ..+++....+ +.+.++.-++|+.+..
T Consensus 139 ~~~~~~~~------~~~l~~~~~~---~~i~i~d~~~~~~~~~ 172 (289)
T cd00200 139 NSVAFSPD------GTFVASSSQD---GTIKLWDLRTGKCVAT 172 (289)
T ss_pred EEEEEcCc------CCEEEEEcCC---CcEEEEEcccccccee
Confidence 22223444 3455443322 5677777777766543
No 41
>KOG4649|consensus
Probab=26.82 E-value=98 Score=34.65 Aligned_cols=59 Identities=27% Similarity=0.463 Sum_probs=43.5
Q ss_pred ccEEEEeCCCCceeeEeecCCCcEEeeecCcccCCCCCccEEEE-ccCceEEEEeCCCcceeeeeccC
Q psy12259 57 GGLIALDSVRPVELWRKTLNNVPKEVDCGLIDINLDGVLDCIVI-ADNGYLAVLSQATGNLLWRKTNN 123 (848)
Q Consensus 57 ~gvlAlsG~nGs~LW~~~l~~ev~~i~C~l~dl~~dg~~dCLl~-Gr~g~L~AIn~~TG~~lW~~~~~ 123 (848)
+-++|++-.+|++.|+.-+-.- ++|.-.-.+ |=+|+ --.|.|..++..||+.+|.+..-
T Consensus 33 ~~~~avd~~sG~~~We~ilg~R---iE~sa~vvg-----dfVV~GCy~g~lYfl~~~tGs~~w~f~~~ 92 (354)
T KOG4649|consen 33 GIVIAVDPQSGNLIWEAILGVR---IECSAIVVG-----DFVVLGCYSGGLYFLCVKTGSQIWNFVIL 92 (354)
T ss_pred ceEEEecCCCCcEEeehhhCce---eeeeeEEEC-----CEEEEEEccCcEEEEEecchhheeeeeeh
Confidence 5789999999999999876543 455533233 22444 46788899999999999997654
No 42
>KOG2321|consensus
Probab=25.35 E-value=1.7e+02 Score=35.82 Aligned_cols=68 Identities=18% Similarity=0.226 Sum_probs=51.5
Q ss_pred CCCCccccEEEEeCCCCce-eeEeecCCCcEEeeecCc---ccCCCCCccE--EEEccCceEEEEeCCCcceeee
Q psy12259 51 QPPPTGGGLIALDSVRPVE-LWRKTLNNVPKEVDCGLI---DINLDGVLDC--IVIADNGYLAVLSQATGNLLWR 119 (848)
Q Consensus 51 ~~sPc~~gvlAlsG~nGs~-LW~~~l~~ev~~i~C~l~---dl~~dg~~dC--Ll~Gr~g~L~AIn~~TG~~lW~ 119 (848)
.-.|| .||+|..|.+|.+ -|......-+..++|..- +++.+..+.. |-....|+-.||-..+|.++-.
T Consensus 182 ~in~~-hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iy 255 (703)
T KOG2321|consen 182 SINEE-HGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIY 255 (703)
T ss_pred eecCc-cceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEE
Confidence 34678 4999999999988 899999999999999865 3343333333 3334559999999999999877
No 43
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=23.70 E-value=2.4e+02 Score=33.31 Aligned_cols=84 Identities=15% Similarity=0.215 Sum_probs=43.4
Q ss_pred cEEEEeCCCCceeeEeecCCCc-----------------------EEeeecCcccCCCCCccEE-EEccCc-eEEEEeCC
Q psy12259 58 GLIALDSVRPVELWRKTLNNVP-----------------------KEVDCGLIDINLDGVLDCI-VIADNG-YLAVLSQA 112 (848)
Q Consensus 58 gvlAlsG~nGs~LW~~~l~~ev-----------------------~~i~C~l~dl~~dg~~dCL-l~Gr~g-~L~AIn~~ 112 (848)
.|+-++ .+|+++|+-.+.+-. -|+....++.+ ...|-| |.+|.. .+..||..
T Consensus 225 ~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd--~~dd~iivSsR~~s~V~~Id~~ 301 (477)
T PF05935_consen 225 VIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYD--PSDDSIIVSSRHQSAVIKIDYR 301 (477)
T ss_dssp EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEE--TTTTEEEEEETTT-EEEEEE-T
T ss_pred EEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEe--CCCCeEEEEcCcceEEEEEECC
Confidence 688899 999999985544332 12333333322 223444 557766 77889999
Q ss_pred CcceeeeeccCCCCCcccccceeccCCCCCCcc
Q psy12259 113 TGNLLWRKTNNGYKDGKMKFPLIVDDLTGDGVN 145 (848)
Q Consensus 113 TG~~lW~~~~~~~~~~~~~~P~lvPDlDgDgV~ 145 (848)
||++.|.+.++..-.... ...++-=+|.+|-|
T Consensus 302 t~~i~Wilg~~~~w~~~~-~~~ll~~vd~~G~~ 333 (477)
T PF05935_consen 302 TGKIKWILGPPGGWNGTY-QDYLLTPVDSNGNP 333 (477)
T ss_dssp TS-EEEEES-STT--TTT-GGGB-EEB-TTS-B
T ss_pred CCcEEEEeCCCCCCCccc-chheeeeeccCCce
Confidence 999999997764322222 33343334544544
No 44
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=23.44 E-value=4.1e+02 Score=26.91 Aligned_cols=36 Identities=19% Similarity=0.297 Sum_probs=27.7
Q ss_pred CCCcEEeeecCcccCCCCCccEEEEccCceEEEEeCCC
Q psy12259 76 NNVPKEVDCGLIDINLDGVLDCIVIADNGYLAVLSQAT 113 (848)
Q Consensus 76 ~~ev~~i~C~l~dl~~dg~~dCLl~Gr~g~L~AIn~~T 113 (848)
.+++..+-++-++. +...|||++|+..-|.|-|-..
T Consensus 47 n~~italaaG~l~~--~~~~D~LliGt~t~llaYDV~~ 82 (136)
T PF14781_consen 47 NQEITALAAGRLKP--DDGRDCLLIGTQTSLLAYDVEN 82 (136)
T ss_pred CCceEEEEEEecCC--CCCcCEEEEeccceEEEEEccc
Confidence 46777788886665 3457999999999999988743
No 45
>KOG1539|consensus
Probab=21.55 E-value=4.4e+02 Score=33.75 Aligned_cols=105 Identities=16% Similarity=0.209 Sum_probs=66.6
Q ss_pred CccccEEEEeCCCCceeeEeecCCCcEEeeecCcccCCCCC----------ccEEEEccCceEEEEeCCCcceeeeeccC
Q psy12259 54 PTGGGLIALDSVRPVELWRKTLNNVPKEVDCGLIDINLDGV----------LDCIVIADNGYLAVLSQATGNLLWRKTNN 123 (848)
Q Consensus 54 Pc~~gvlAlsG~nGs~LW~~~l~~ev~~i~C~l~dl~~dg~----------~dCLl~Gr~g~L~AIn~~TG~~lW~~~~~ 123 (848)
|-+--++|++-.++--.|.....++....+-++.....+.. +--+|.-..|-|..+|-+||+.+-+++..
T Consensus 122 ~fGe~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~ 201 (910)
T KOG1539|consen 122 PFGEHLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALLHPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEF 201 (910)
T ss_pred eecceEEEEEccCcEEEEEeccccccccccceeeeccCCceeeEecchhheeeEEEeecCCcEEEEEeccCcEEEEeccc
Confidence 33446899999999999999885443355533333332211 11345567888999999999999999877
Q ss_pred CCCCcccc-cceeccCCCCCCccceEEEeecCCceeEEEEEeCCCCccc
Q psy12259 124 GYKDGKMK-FPLIVDDLTGDGVNDLVLISYMGPSKYQLALLSGSNGVQI 171 (848)
Q Consensus 124 ~~~~~~~~-~P~lvPDlDgDgV~DLLv~t~~~~~~~~l~LiSGkTG~~I 171 (848)
+-....+. +|++ |++++-.++ +.++|.-=|+|.+|
T Consensus 202 ~s~IT~ieqsPaL----------DVVaiG~~~---G~ViifNlK~dkil 237 (910)
T KOG1539|consen 202 FSRITAIEQSPAL----------DVVAIGLEN---GTVIIFNLKFDKIL 237 (910)
T ss_pred ccceeEeccCCcc----------eEEEEeccC---ceEEEEEcccCcEE
Confidence 54444443 7766 666654443 44555555555444
No 46
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=20.39 E-value=79 Score=30.78 Aligned_cols=14 Identities=43% Similarity=0.812 Sum_probs=8.8
Q ss_pred ccCCCCCCccceEE
Q psy12259 136 VDDLTGDGVNDLVL 149 (848)
Q Consensus 136 vPDlDgDgV~DLLv 149 (848)
+-|+||||-..||+
T Consensus 7 ~~d~d~dg~~eLlv 20 (111)
T PF14783_consen 7 LFDFDGDGENELLV 20 (111)
T ss_pred EEecCCCCcceEEE
Confidence 55666666666654
Done!