Query psy12259
Match_columns 848
No_of_seqs 357 out of 602
Neff 4.6
Searched_HMMs 29240
Date Fri Aug 16 22:48:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12259.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12259hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3otd_A TRNA(His) guanylyltrans 100.0 1.5E-95 5E-100 760.9 21.1 252 574-842 1-268 (269)
2 3otd_A TRNA(His) guanylyltrans 100.0 8E-53 2.7E-57 439.6 9.1 202 376-604 11-219 (269)
3 2zux_A YESW protein; beta-prop 96.4 0.0082 2.8E-07 69.5 9.6 106 80-196 113-233 (591)
4 2zuy_A YESX protein; beta-prop 96.4 0.008 2.7E-07 69.9 9.5 109 80-199 117-240 (620)
5 3q7m_A Lipoprotein YFGL, BAMB; 96.2 0.025 8.6E-07 59.1 11.5 98 57-172 63-167 (376)
6 1w6s_A Methanol dehydrogenase 95.2 0.13 4.4E-06 59.7 13.0 66 104-173 278-348 (599)
7 1kv9_A Type II quinohemoprotei 95.1 0.085 2.9E-06 61.4 11.6 65 105-172 271-338 (668)
8 3q7m_A Lipoprotein YFGL, BAMB; 95.1 0.12 4E-06 54.0 11.4 96 57-171 113-211 (376)
9 1yiq_A Quinohemoprotein alcoho 95.0 0.09 3.1E-06 61.5 11.2 66 105-173 276-344 (689)
10 1flg_A Protein (quinoprotein e 94.9 0.079 2.7E-06 60.9 10.3 109 58-172 79-198 (582)
11 1kv9_A Type II quinohemoprotei 94.9 0.087 3E-06 61.3 10.7 105 57-173 76-193 (668)
12 1flg_A Protein (quinoprotein e 94.8 0.26 8.8E-06 56.7 14.0 66 104-173 291-361 (582)
13 2ad6_A Methanol dehydrogenase 94.7 0.22 7.4E-06 57.0 13.3 113 57-173 176-341 (571)
14 2zux_A YESW protein; beta-prop 94.5 0.12 4E-06 60.1 10.4 121 58-182 230-373 (591)
15 1kb0_A Quinohemoprotein alcoho 94.5 0.13 4.5E-06 60.0 11.1 105 57-173 87-205 (677)
16 1w6s_A Methanol dehydrogenase 94.4 0.16 5.5E-06 58.9 11.3 107 57-171 73-195 (599)
17 1yiq_A Quinohemoprotein alcoho 94.1 0.16 5.5E-06 59.4 10.6 105 57-173 80-198 (689)
18 2ad6_A Methanol dehydrogenase 94.1 0.14 4.9E-06 58.5 9.8 104 57-172 73-190 (571)
19 2zuy_A YESX protein; beta-prop 93.7 0.17 5.9E-06 59.0 9.5 120 58-182 234-377 (620)
20 1kb0_A Quinohemoprotein alcoho 93.6 0.27 9.3E-06 57.3 11.2 65 105-173 284-352 (677)
21 2hz6_A Endoplasmic reticulum t 90.6 0.27 9.1E-06 52.5 5.8 93 57-171 102-196 (369)
22 2hz6_A Endoplasmic reticulum t 90.6 0.3 1E-05 52.1 6.3 74 57-144 140-216 (369)
23 2be1_A Serine/threonine-protei 90.2 0.74 2.5E-05 50.0 8.9 106 56-171 19-134 (339)
24 2be1_A Serine/threonine-protei 89.9 0.2 7E-06 54.4 4.2 109 56-169 66-185 (339)
25 3no2_A Uncharacterized protein 89.8 2.3 7.8E-05 43.6 11.8 95 57-171 15-111 (276)
26 3no2_A Uncharacterized protein 87.3 1.7 5.8E-05 44.5 8.8 59 57-123 146-205 (276)
27 3hx6_A Type 4 fimbrial biogene 82.4 14 0.00046 43.2 14.1 91 58-150 165-270 (570)
28 3k6s_A Integrin alpha-X; cell 80.4 2.7 9.2E-05 52.3 7.9 83 86-168 445-542 (1095)
29 3vi3_A Integrin alpha-5; beta 79.3 2.2 7.7E-05 50.1 6.4 81 87-168 292-392 (632)
30 3vi3_A Integrin alpha-5; beta 78.0 4.5 0.00016 47.5 8.5 34 135-168 290-332 (632)
31 3ije_A Integrin alpha-V; integ 77.6 8 0.00027 47.6 10.7 60 87-151 229-297 (967)
32 3hxj_A Pyrrolo-quinoline quino 75.9 3.7 0.00013 41.0 6.1 90 57-171 40-129 (330)
33 3ije_A Integrin alpha-V; integ 73.1 4.5 0.00016 49.7 7.0 80 86-168 282-381 (967)
34 3t3p_A Integrin alpha-IIB; int 72.8 4.6 0.00016 45.7 6.5 31 136-166 363-395 (457)
35 3fcs_A Integrin, alpha 2B; bet 72.4 3.5 0.00012 50.7 5.8 81 86-167 295-396 (959)
36 3v4v_A Integrin alpha-4; cell 70.5 5.6 0.00019 46.4 6.7 82 86-168 279-375 (597)
37 3hxj_A Pyrrolo-quinoline quino 68.8 28 0.00097 34.5 10.7 90 57-171 117-207 (330)
38 3v4v_A Integrin alpha-4; cell 68.0 11 0.00037 44.0 8.4 65 86-153 224-296 (597)
39 4a7k_A Aldos-2-ulose dehydrata 63.1 14 0.00048 44.9 8.1 93 79-178 336-447 (900)
40 4a7k_A Aldos-2-ulose dehydrata 58.7 10 0.00035 46.1 5.8 66 86-152 99-175 (900)
41 3vgz_A Uncharacterized protein 58.0 57 0.0019 32.4 10.5 109 57-173 69-179 (353)
42 2bwr_A Psathyrella velutina le 57.5 9 0.00031 41.5 4.9 64 85-150 230-300 (401)
43 2bwr_A Psathyrella velutina le 56.3 10 0.00034 41.1 5.0 66 85-150 174-245 (401)
44 3t3p_A Integrin alpha-IIB; int 55.7 18 0.00063 40.8 7.1 75 86-164 363-449 (457)
45 3k6s_A Integrin alpha-X; cell 54.0 47 0.0016 41.4 10.9 72 95-168 398-481 (1095)
46 3fcs_A Integrin, alpha 2B; bet 50.6 24 0.00082 43.4 7.5 77 86-166 363-451 (959)
47 3vgz_A Uncharacterized protein 37.9 1.7E+02 0.0059 28.8 10.3 60 101-173 250-309 (353)
48 4a11_B DNA excision repair pro 32.5 2.2E+02 0.0075 28.5 10.2 105 57-173 257-371 (408)
49 2ovr_B FBW7, F-BOX/WD repeat p 31.8 1.6E+02 0.0054 30.9 9.3 63 101-174 336-398 (445)
50 3vl1_A 26S proteasome regulato 31.5 4.3E+02 0.015 26.8 13.2 65 57-123 151-222 (420)
51 1sq9_A Antiviral protein SKI8; 30.8 3.9E+02 0.013 26.8 11.8 108 58-173 138-273 (397)
52 2aq5_A Coronin-1A; WD40 repeat 27.7 4.1E+02 0.014 27.2 11.5 106 56-173 93-213 (402)
53 1r5m_A SIR4-interacting protei 25.9 3.1E+02 0.011 27.5 10.0 63 97-172 122-185 (425)
54 3k26_A Polycomb protein EED; W 24.0 2.4E+02 0.008 27.7 8.5 106 57-171 85-196 (366)
55 4ery_A WD repeat-containing pr 22.2 5E+02 0.017 25.3 10.5 103 57-172 77-185 (312)
56 3od9_A Putative exported prote 21.8 50 0.0017 31.7 2.8 20 394-413 64-83 (135)
57 3bws_A Protein LP49; two-domai 21.7 5E+02 0.017 26.5 10.8 64 97-171 183-247 (433)
58 1sq9_A Antiviral protein SKI8; 21.1 4.1E+02 0.014 26.6 9.8 62 59-122 199-276 (397)
59 1gxr_A ESG1, transducin-like e 21.0 5.6E+02 0.019 24.6 10.9 104 57-173 109-220 (337)
60 4ery_A WD repeat-containing pr 20.3 5.8E+02 0.02 24.8 10.5 101 57-171 35-142 (312)
61 4aez_A CDC20, WD repeat-contai 20.3 7.1E+02 0.024 25.5 12.9 101 57-169 229-338 (401)
No 1
>3otd_A TRNA(His) guanylyltransferase; polymerase-like PALM domain, catalytic carboxylates; 2.28A {Homo sapiens} PDB: 3otc_A 3otb_A 3ote_A
Probab=100.00 E-value=1.5e-95 Score=760.87 Aligned_cols=252 Identities=52% Similarity=0.960 Sum_probs=235.0
Q ss_pred cccccccccccccCCCCCCccccccccccccccccCCCceEEEEecCCChhccccccCCCCCCCHHHHHHHHHHHHHHHH
Q psy12259 574 SRYSGFDYIDWLNFSHTPKVTTCSCFMEFESHDRCLPNCFIVVRVDGKGFHKFTEAHGFDKPNDRSGLWLMSKAAACVIE 653 (848)
Q Consensus 574 ma~sk~Eyv~~in~n~~p~~~~c~~~k~fE~~~~llp~~~iVVRiDGr~Fhkfs~~~~F~KP~D~r~l~lM~~aA~~vm~ 653 (848)
||+|||||| |.||.+|+|+|++|||||||||+|||||+.|+|+||||+|+|+||++||++||+
T Consensus 1 ma~sk~eyv-----------------r~fE~~d~llp~~~iVVRiDGr~F~kfs~~~~F~KPnD~r~l~lM~~aA~~lm~ 63 (269)
T 3otd_A 1 MAKSKFEYV-----------------RDFEADDTCLAHCWVVVRLDGRNFHRFAEKHNFAKPNDSRALQLMTKCAQTVME 63 (269)
T ss_dssp --CCSSGGG-----------------GGGCCCCBCCTTSEEEEEEEETTHHHHHHHTTCCSSCCHHHHHHHHHHHHHHHH
T ss_pred CCCccchhh-----------------hhhccccccCCCCeEEEEEeCCccchhhhhcCCCCCCCHHHHHHHHHHHHHHHH
Confidence 899999999 999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCeEEEEeeeeeEEEEEecCCcccccccchhhhhhHhHHHhHHHhHHHHHh-ccccCCCCCccceEEEcCChhhHHHH
Q psy12259 654 EFNDICCAYGQSDEYSFIFSRNTNIYNRRADKIASVVCSLFTSSYGFYWDKFC-CKKLKYPPAFDSRVILYPTVRNLRDY 732 (848)
Q Consensus 654 ~f~~i~~AY~~SDEiSfvf~~~~~~f~rR~~KL~S~~aS~fSs~f~~~w~~~f-~~~L~~pp~FD~Rvv~~Ps~~~v~dY 732 (848)
+|++|++||||||||||||++++.+|+||++||+|++||+|||+|+++|+++| +++|.+||+||||||+||+.++|+||
T Consensus 64 ~~~~i~~aYg~SDEiSfvf~~~~~~f~rR~~KL~S~~aS~fSs~y~~~w~~~fp~~~L~~pp~FD~Rvv~~P~~~~v~dY 143 (269)
T 3otd_A 64 ELEDIVIAYGQSDEYSFVFKRKTNWFKRRASKFMTHVASQFASSYVFYWRDYFEDQPLLYPPGFDGRVVVYPSNQTLKDY 143 (269)
T ss_dssp HSSSEEEEEEETTEEEEEECTTCCTTTTBHHHHHHHHHHHHHHHHHHTHHHHCSSSCCCSCCCEEEEEEEESSHHHHHHH
T ss_pred HcCCeEEEEecCcEEEEEECCCChhhcchhHHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCCceeEEeCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999 89999999999999999999999999
Q ss_pred HHHHHHHHHHhhcchhhhhHHHHhcCCCHHHHHHHhcCCChhHHHHHHhhhcCCCCCCcccccccceEEEEeeccCC---
Q psy12259 733 LSWRQADAHINNLYNTAFWGLVQKCGHSKQEAEKILRGTVSSEKHELLFKDCKINYNNECELYKKGTIIIKSLVPSS--- 809 (848)
Q Consensus 733 l~WRQ~DchrNnl~nt~fw~Lv~~~G~s~~eA~~~L~G~~s~dknElLf~~~GINyn~~P~~~RkGs~i~r~~~~~~--- 809 (848)
|+|||+|||||||||||||+|||++|+|++||+++|+||.++|||||||++||||||++|+||||||+|+|+.++..
T Consensus 144 l~WRQ~D~h~Nnlynt~fw~Lv~~~G~s~~eA~~~L~Gt~s~dknEiLf~~fGINyn~~P~~~rkGs~i~r~~~~~~~~~ 223 (269)
T 3otd_A 144 LSWRQADCHINNLYNTVFWALIQQSGLTPVQAQGRLQGTLAADKNEILFSEFNINYNNELPMYRKGTVLIWQKVDEVMTK 223 (269)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTCCHHHHHHHHHHHHCCCGGGSCHHHHHCEEEEEC--------
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHhcCCCHHHHHHHHcCCcHHHHHHHHHHHcCCChhhCcHhHcceEEEEEeeeeccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987542
Q ss_pred ----------C--CCcccceeeeecccccCCccccccCCccccCC
Q psy12259 810 ----------T--GSPVCNTVYVPLNCDIINDKFWNENPHILDSS 842 (848)
Q Consensus 810 ----------~--~~~~~r~~i~~~h~dii~d~fw~~~~~~l~~~ 842 (848)
+ ..++.|++|+++|+|||+|+||++||+||+++
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~i~~~h~dii~d~fw~~~~~~l~~~ 268 (269)
T 3otd_A 224 EIKLPTEMEGKKMAVTRTRTKPVPLHCDIIGDAFWKEHPEILDED 268 (269)
T ss_dssp -------------------CCEEEECCCCSSHHHHHHCTHHHHSC
T ss_pred ccccccccccccccccccccceeEEecCCcCchhhhhCchhccCC
Confidence 1 12234568999999999999999999999765
No 2
>3otd_A TRNA(His) guanylyltransferase; polymerase-like PALM domain, catalytic carboxylates; 2.28A {Homo sapiens} PDB: 3otc_A 3otb_A 3ote_A
Probab=100.00 E-value=8e-53 Score=439.59 Aligned_cols=202 Identities=35% Similarity=0.632 Sum_probs=174.0
Q ss_pred hhhccCCCCCCCCccccceEEEecCCCCCcceEEEEeeecCCCCCCCcccchhhhhhHHHHhhchhhHHHHHHhhhcCCe
Q psy12259 376 QLCHSNSCQPGTSLQEYSLLLADLDKDGSQDLISYLVTYAGPDKSSDIQTWSLVSQIRVIRLEHELPKLYEFLHKKFNDI 455 (848)
Q Consensus 376 q~c~~~~cqpdl~~q~~s~~~~~ld~d~~~elisy~s~~~~~~~~~~~~~~~L~s~vrvirL~selpklyEavm~~~~~i 455 (848)
+|=..+.|.|+. -.|..|||.||+++. .-.+++| |++.|+++++ ......||++|+||
T Consensus 11 ~fE~~d~llp~~------~iVVRiDGr~F~kfs----~~~~F~K---------PnD~r~l~lM---~~aA~~lm~~~~~i 68 (269)
T 3otd_A 11 DFEADDTCLAHC------WVVVRLDGRNFHRFA----EKHNFAK---------PNDSRALQLM---TKCAQTVMEELEDI 68 (269)
T ss_dssp GGCCCCBCCTTS------EEEEEEEETTHHHHH----HHTTCCS---------SCCHHHHHHH---HHHHHHHHHHSSSE
T ss_pred hhccccccCCCC------eEEEEEeCCccchhh----hhcCCCC---------CCCHHHHHHH---HHHHHHHHHHcCCe
Confidence 333345666654 459999999999976 2334444 4455666666 34456899999999
Q ss_pred EEEeeecceeeEEeecCCcccccccchhhhhhhhhhhhhhhhhhhHhc-ccccCCCCcceeEEeeeCChhhHHHHHHHhh
Q psy12259 456 CCAYGQSDEYSFIFSRNTNIYNRRADKIASVVCSLFTSSYGFYWDKFC-CKKLKYPPAFDSRVILYPTVRNLRDYLSWRQ 534 (848)
Q Consensus 456 ~~aY~~SDEiSflf~~~~~~f~rR~~Kl~S~~aS~~Ss~f~~~w~~~f-~~~L~~~p~FD~Rvv~~P~~~~v~dYl~WRQ 534 (848)
++||||||||||||++++.+|+||++||+|++||+|||+|+++|+++| +++|.+||+||||||+||+.++|+|||+|||
T Consensus 69 ~~aYg~SDEiSfvf~~~~~~f~rR~~KL~S~~aS~fSs~y~~~w~~~fp~~~L~~pp~FD~Rvv~~P~~~~v~dYl~WRQ 148 (269)
T 3otd_A 69 VIAYGQSDEYSFVFKRKTNWFKRRASKFMTHVASQFASSYVFYWRDYFEDQPLLYPPGFDGRVVVYPSNQTLKDYLSWRQ 148 (269)
T ss_dssp EEEEEETTEEEEEECTTCCTTTTBHHHHHHHHHHHHHHHHHHTHHHHCSSSCCCSCCCEEEEEEEESSHHHHHHHHHHHH
T ss_pred EEEEecCcEEEEEECCCChhhcchhHHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCCceeEEeCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998 5789999999999999999999999999999
Q ss_pred hcceeeccchhhhhhhhhhcCCCCchhhHHHhhhccccccccccccccc---cccCCCCCCc---ccccccccccc
Q psy12259 535 ADAHINNLYNTAFWGLVQKCGHSKQEPLKQLVLHKIGKNSRYSGFDYID---WLNFSHTPKV---TTCSCFMEFES 604 (848)
Q Consensus 535 ~Dch~Nnl~n~~fw~Lv~~g~~s~~eA~krl~~~lLs~tma~sk~Eyv~---~in~n~~p~~---~~c~~~k~fE~ 604 (848)
+|||||||||||||+||+++|+|++||+++ |.|+.+.+|+|++- |||||++|.| |+|++|+..|.
T Consensus 149 ~D~h~Nnlynt~fw~Lv~~~G~s~~eA~~~-----L~Gt~s~dknEiLf~~fGINyn~~P~~~rkGs~i~r~~~~~ 219 (269)
T 3otd_A 149 ADCHINNLYNTVFWALIQQSGLTPVQAQGR-----LQGTLAADKNEILFSEFNINYNNELPMYRKGTVLIWQKVDE 219 (269)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCHHHHHHH-----HTTCCHHHHHHHHHHHHCCCGGGSCHHHHHCEEEEEC----
T ss_pred HHHHHHhHHHHHHHHHHHhcCCCHHHHHHH-----HcCCcHHHHHHHHHHHcCCChhhCcHhHcceEEEEEeeeec
Confidence 999999999999999999999999999999 45688999999874 9999999999 99999987765
No 3
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=96.39 E-value=0.0082 Score=69.54 Aligned_cols=106 Identities=23% Similarity=0.365 Sum_probs=76.3
Q ss_pred EEeeecCcccCCCCCccEEEEcc--------------CceEEEEeCCCcceeeeeccC-CCCCcccccceeccCCCCCCc
Q psy12259 80 KEVDCGLIDINLDGVLDCIVIAD--------------NGYLAVLSQATGNLLWRKTNN-GYKDGKMKFPLIVDDLTGDGV 144 (848)
Q Consensus 80 ~~i~C~l~dl~~dg~~dCLl~Gr--------------~g~L~AIn~~TG~~lW~~~~~-~~~~~~~~~P~lvPDlDgDgV 144 (848)
...++.+-|+++||..+-||... ...|.|.+. +|+.||+.... ....+.-+.++.|-|+||||.
T Consensus 113 ~~nd~sVgDLDGDG~~EiVv~~dp~n~~d~s~~g~tg~~~l~aY~l-dG~~LW~idlg~ni~aGa~yt~~~V~DlDGDGk 191 (591)
T 2zux_A 113 SANDASVGDVDGDGQYELILKWDPSNSKDNSQDGYTGDVLIDAYKL-DGTKLWRINLGKNIRAGAHYTQFMVYDLDGDGK 191 (591)
T ss_dssp EEEEEEEECSSSSSSCEEEEEEEETTCCCTTCCSCCCCCEEEEECT-TSCEEEEEECCTTSCCSTTSCCCEEECSSSSSS
T ss_pred ecCCCeEEecCCCCCEEEEEEECCcccccccccCcCCCcEEEEEEC-CCCEEEEEcCCCCcccccccCceeEEEcCCCCc
Confidence 46778899999999999998864 146888888 79999987643 223333456777999999999
Q ss_pred cceEEEeecCCceeEEEEEeCCCCcccCCccccCCcccccCccccCCcEEEE
Q psy12259 145 NDLVLISYMGPSKYQLALLSGSNGVQIGTPLVKEDCDQMTGLNLTSPDTVIY 196 (848)
Q Consensus 145 ~DLLv~t~~~~~~~~l~LiSGkTG~~IG~~v~l~~~~~~~~lt~~ga~yILF 196 (848)
.+|++.+..+.. =.+|+.||++-.=. -.. .+.-.+|..|+..
T Consensus 192 aEIvv~TadGt~--------dg~g~~ig~~~~dy-rn~-~g~il~GpEyL~v 233 (591)
T 2zux_A 192 AEVAMKTADGTK--------DGTGKVIGNANADY-RNE-QGRVLSGPEYLTV 233 (591)
T ss_dssp CEEEEEECTTCB--------CTTSCBCSSTTCCC-BCT-TSCBCSSCCEEEE
T ss_pred ceEEEEccCCcc--------cCCceEeccccccc-ccc-cceeecCCcEEEE
Confidence 999999886632 25799999863311 112 2345667777744
No 4
>2zuy_A YESX protein; beta-propeller, lyase; 1.65A {Bacillus subtilis}
Probab=96.38 E-value=0.008 Score=69.89 Aligned_cols=109 Identities=23% Similarity=0.344 Sum_probs=77.5
Q ss_pred EEeeecCcccCCCCCccEEEEccC--------------ceEEEEeCCCcceeeeeccC-CCCCcccccceeccCCCCCCc
Q psy12259 80 KEVDCGLIDINLDGVLDCIVIADN--------------GYLAVLSQATGNLLWRKTNN-GYKDGKMKFPLIVDDLTGDGV 144 (848)
Q Consensus 80 ~~i~C~l~dl~~dg~~dCLl~Gr~--------------g~L~AIn~~TG~~lW~~~~~-~~~~~~~~~P~lvPDlDgDgV 144 (848)
...++.+-|+++||..+-||...+ ..|.|.+. +|+.||+.... ....+.-+.++.|-|+||||.
T Consensus 117 ~and~sVgDLDGDG~~EIVv~~d~~n~~d~s~~g~tg~~~l~aY~l-dG~~LW~idlg~Ni~aGahyt~~~V~DlDGDGk 195 (620)
T 2zuy_A 117 SANDASVGDIDGDGEYEMILKWDPSNSKDNAHDGYTGEVLIDAYKL-DGTFLWRINLGRNIRAGAHYTQFMVYDLDGDGK 195 (620)
T ss_dssp EEEEEEEECSSSSSSCEEEEEEEETTCCCTTSCCCCCCCEEEEECT-TSCEEEEEECCTTSCCSTTSCCCEEECSSSSSS
T ss_pred ecCCCeEEecCCCCCeEEEEEECCCccccccccccCCCcEEEEEEC-CCCEEEEEcCCCCcccccccCceeEEEcCCCCc
Confidence 467788999999999999988642 36788888 79999998643 223333456777999999999
Q ss_pred cceEEEeecCCceeEEEEEeCCCCcccCCccccCCcccccCccccCCcEEEEEcc
Q psy12259 145 NDLVLISYMGPSKYQLALLSGSNGVQIGTPLVKEDCDQMTGLNLTSPDTVIYVCV 199 (848)
Q Consensus 145 ~DLLv~t~~~~~~~~l~LiSGkTG~~IG~~v~l~~~~~~~~lt~~ga~yILFgcg 199 (848)
.+|++.+..+.. -.+|+.||++-.=. ... .+.-++|..|+..--|
T Consensus 196 aEIvv~TadGt~--------dg~g~vigd~~~dy-r~~-~g~il~G~eyL~vfdG 240 (620)
T 2zuy_A 196 AEIAMKTADGTT--------DGKGHIIGDEQADF-RNE-QGRILSGPEYLTVFKG 240 (620)
T ss_dssp CEEEEEECTTCB--------CTTSCBCSCTTCCC-BCT-TSCBCSSCCEEEEEET
T ss_pred ceEEEEccCCcc--------cCcceeeccccccc-ccc-cceEecCCeEEEEEcC
Confidence 999998876632 25899999864311 222 2344668877744433
No 5
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=96.21 E-value=0.025 Score=59.09 Aligned_cols=98 Identities=21% Similarity=0.362 Sum_probs=63.9
Q ss_pred ccEEEEeCCCCceeeEeecCCC-------cEEeeecCcccCCCCCccEEEEccCceEEEEeCCCcceeeeeccCCCCCcc
Q psy12259 57 GGLIALDSVRPVELWRKTLNNV-------PKEVDCGLIDINLDGVLDCIVIADNGYLAVLSQATGNLLWRKTNNGYKDGK 129 (848)
Q Consensus 57 ~gvlAlsG~nGs~LW~~~l~~e-------v~~i~C~l~dl~~dg~~dCLl~Gr~g~L~AIn~~TG~~lW~~~~~~~~~~~ 129 (848)
+.|.|++..+|+++|+..+... ...+.++.. .. + ...++....|.|.|+|..||+.+|+.+.... .
T Consensus 63 g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~-~~-~--~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~---~ 135 (376)
T 3q7m_A 63 GLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVT-VS-G--GHVYIGSEKAQVYALNTSDGTVAWQTKVAGE---A 135 (376)
T ss_dssp SEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEE-EE-T--TEEEEEETTSEEEEEETTTCCEEEEEECSSC---C
T ss_pred CeEEEEEccCCceeeeecCccccccccccCcccccCce-Ee-C--CEEEEEcCCCEEEEEECCCCCEEEEEeCCCc---e
Confidence 4899999999999999988543 122333322 22 1 1233444567899999999999999875432 1
Q ss_pred cccceeccCCCCCCccceEEEeecCCceeEEEEEeCCCCcccC
Q psy12259 130 MKFPLIVDDLTGDGVNDLVLISYMGPSKYQLALLSGSNGVQIG 172 (848)
Q Consensus 130 ~~~P~lvPDlDgDgV~DLLv~t~~~~~~~~l~LiSGkTG~~IG 172 (848)
...|++. .+.+++...+ +.+..+.-+||+++-
T Consensus 136 ~~~p~~~--------~~~v~v~~~~---g~l~~~d~~tG~~~W 167 (376)
T 3q7m_A 136 LSRPVVS--------DGLVLIHTSN---GQLQALNEADGAVKW 167 (376)
T ss_dssp CSCCEEE--------TTEEEEECTT---SEEEEEETTTCCEEE
T ss_pred EcCCEEE--------CCEEEEEcCC---CeEEEEECCCCcEEE
Confidence 3345442 2355554433 679999999998763
No 6
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=95.15 E-value=0.13 Score=59.69 Aligned_cols=66 Identities=11% Similarity=0.064 Sum_probs=42.6
Q ss_pred ceEEEEeCCCcceeeeeccCCCCCcc---ccccee--ccCCCCCCccceEEEeecCCceeEEEEEeCCCCcccCC
Q psy12259 104 GYLAVLSQATGNLLWRKTNNGYKDGK---MKFPLI--VDDLTGDGVNDLVLISYMGPSKYQLALLSGSNGVQIGT 173 (848)
Q Consensus 104 g~L~AIn~~TG~~lW~~~~~~~~~~~---~~~P~l--vPDlDgDgV~DLLv~t~~~~~~~~l~LiSGkTG~~IG~ 173 (848)
+.+.|+|..||+.+|++......... ...|++ ++|.||..+ .+++. ... .+.+..+.-+||++|-.
T Consensus 278 ~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~-~~v~~-~~~--~G~l~~lD~~tG~~lw~ 348 (599)
T 1w6s_A 278 MTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKAR-KLLTH-PDR--NGIVYTLDRTDGALVSA 348 (599)
T ss_dssp SEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEE-EEEEE-ECT--TSEEEEEETTTCCEEEE
T ss_pred ceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEE-EEEEE-ECC--CcEEEEEECCCCCEeec
Confidence 37899999999999998654322111 236666 444554433 44443 322 27899999999998754
No 7
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=95.15 E-value=0.085 Score=61.37 Aligned_cols=65 Identities=18% Similarity=0.236 Sum_probs=44.8
Q ss_pred eEEEEeCCCcceeeeeccCCCC--CcccccceeccCCCCCCcc-ceEEEeecCCceeEEEEEeCCCCcccC
Q psy12259 105 YLAVLSQATGNLLWRKTNNGYK--DGKMKFPLIVDDLTGDGVN-DLVLISYMGPSKYQLALLSGSNGVQIG 172 (848)
Q Consensus 105 ~L~AIn~~TG~~lW~~~~~~~~--~~~~~~P~lvPDlDgDgV~-DLLv~t~~~~~~~~l~LiSGkTG~~IG 172 (848)
.+.|+|..||+.+|++...... ......|.++-|+.-||-. +++++... .+.+..+.-+||++|.
T Consensus 271 ~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~---~G~l~~lD~~tG~~l~ 338 (668)
T 1kv9_A 271 SILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPK---NGFFYVLDRTNGKLIS 338 (668)
T ss_dssp EEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCT---TSEEEEEETTTCCEEE
T ss_pred eEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECC---CCEEEEEECCCCCEec
Confidence 4899999999999998754222 2224467776676656643 34443322 2889999999999884
No 8
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=95.11 E-value=0.12 Score=54.01 Aligned_cols=96 Identities=16% Similarity=0.194 Sum_probs=62.1
Q ss_pred ccEEEEeCCCCceeeEeecCCCcEEeeecCcccCCCCCccEEEE-ccCceEEEEeCCCcceeeeeccCCCC--Ccccccc
Q psy12259 57 GGLIALDSVRPVELWRKTLNNVPKEVDCGLIDINLDGVLDCIVI-ADNGYLAVLSQATGNLLWRKTNNGYK--DGKMKFP 133 (848)
Q Consensus 57 ~gvlAlsG~nGs~LW~~~l~~ev~~i~C~l~dl~~dg~~dCLl~-Gr~g~L~AIn~~TG~~lW~~~~~~~~--~~~~~~P 133 (848)
+.|.|++-.+|+++|+..+..++ .+. +-+. + +-|++ ...|.+.|+|..||+.+|+.+..... ......|
T Consensus 113 g~l~a~d~~tG~~~W~~~~~~~~---~~~-p~~~-~---~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~ 184 (376)
T 3q7m_A 113 AQVYALNTSDGTVAWQTKVAGEA---LSR-PVVS-D---GLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAP 184 (376)
T ss_dssp SEEEEEETTTCCEEEEEECSSCC---CSC-CEEE-T---TEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCC
T ss_pred CEEEEEECCCCCEEEEEeCCCce---EcC-CEEE-C---CEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCc
Confidence 47999999999999999887653 222 1111 1 23444 55778999999999999998654211 1112345
Q ss_pred eeccCCCCCCccceEEEeecCCceeEEEEEeCCCCccc
Q psy12259 134 LIVDDLTGDGVNDLVLISYMGPSKYQLALLSGSNGVQI 171 (848)
Q Consensus 134 ~lvPDlDgDgV~DLLv~t~~~~~~~~l~LiSGkTG~~I 171 (848)
++. .+.+++...+ +.+..+.-+||+++
T Consensus 185 ~~~--------~~~v~~g~~~---g~l~~~d~~tG~~~ 211 (376)
T 3q7m_A 185 TTA--------FGAAVVGGDN---GRVSAVLMEQGQMI 211 (376)
T ss_dssp EEE--------TTEEEECCTT---TEEEEEETTTCCEE
T ss_pred EEE--------CCEEEEEcCC---CEEEEEECCCCcEE
Confidence 442 1355553332 67899999999885
No 9
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=94.99 E-value=0.09 Score=61.48 Aligned_cols=66 Identities=14% Similarity=0.249 Sum_probs=44.6
Q ss_pred eEEEEeCCCcceeeeeccCCCC--CcccccceeccCCCCCCc-cceEEEeecCCceeEEEEEeCCCCcccCC
Q psy12259 105 YLAVLSQATGNLLWRKTNNGYK--DGKMKFPLIVDDLTGDGV-NDLVLISYMGPSKYQLALLSGSNGVQIGT 173 (848)
Q Consensus 105 ~L~AIn~~TG~~lW~~~~~~~~--~~~~~~P~lvPDlDgDgV-~DLLv~t~~~~~~~~l~LiSGkTG~~IG~ 173 (848)
.+.|+|..||+.+|++...... ......|.++.|+.-||- .+++++... .+.+..+.-+||++|.+
T Consensus 276 ~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~---~G~l~~lD~~tG~~l~~ 344 (689)
T 1yiq_A 276 SIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPK---NGFFYVIDRATGELLSA 344 (689)
T ss_dssp EEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCT---TSEEEEEETTTCCEEEE
T ss_pred eEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECC---CCeEEEEECCCCCEecc
Confidence 4899999999999998654222 222445666667655654 344443222 28899999999999843
No 10
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=94.91 E-value=0.079 Score=60.89 Aligned_cols=109 Identities=22% Similarity=0.260 Sum_probs=67.9
Q ss_pred cEEEEeCCCCceeeEeecCCCcEE-eeecC----cccCCCCCccEEEEc-cCceEEEEeCCCcceeeeeccCCCC-C-cc
Q psy12259 58 GLIALDSVRPVELWRKTLNNVPKE-VDCGL----IDINLDGVLDCIVIA-DNGYLAVLSQATGNLLWRKTNNGYK-D-GK 129 (848)
Q Consensus 58 gvlAlsG~nGs~LW~~~l~~ev~~-i~C~l----~dl~~dg~~dCLl~G-r~g~L~AIn~~TG~~lW~~~~~~~~-~-~~ 129 (848)
.|.||+-.+|+++|+......... ..|.. .-+. .+-|++| ..+.|.|+|..||+.+|+....... . ..
T Consensus 79 ~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~----~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~ 154 (582)
T 1flg_A 79 RLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIY----GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTM 154 (582)
T ss_dssp EEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEE----TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBC
T ss_pred CEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEE----CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCccc
Confidence 599999999999999987654322 23431 1111 1345554 5788999999999999998654211 1 12
Q ss_pred cccceeccCCCCCCccceEEEeecCC---ceeEEEEEeCCCCcccC
Q psy12259 130 MKFPLIVDDLTGDGVNDLVLISYMGP---SKYQLALLSGSNGVQIG 172 (848)
Q Consensus 130 ~~~P~lvPDlDgDgV~DLLv~t~~~~---~~~~l~LiSGkTG~~IG 172 (848)
...|++..| +.+|-. ++++..... ..+.+.-+.-+||+++=
T Consensus 155 ~~sP~v~~~-~~~G~~-~v~vg~~~~e~~~~g~v~alD~~tG~~~W 198 (582)
T 1flg_A 155 TGAPTIVKD-GKTGKV-LLIHGSSGDEFGVVGRLFARDPDTGEEIW 198 (582)
T ss_dssp CSCCEEEEC-TTTCCE-EEEECCBCGGGCCBCEEEEECTTTCCEEE
T ss_pred ccCCEEeCC-CcCCcE-EEEEeccccccCCCCEEEEEECCCCCEEe
Confidence 346777543 233432 454433211 13788889999998764
No 11
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=94.89 E-value=0.087 Score=61.30 Aligned_cols=105 Identities=21% Similarity=0.301 Sum_probs=66.2
Q ss_pred ccEEEEeCCCCceeeEeecCCCcEE---eeecC----cccCCCCCccEEEEc-cCceEEEEeCCCcceeeeeccCCC-CC
Q psy12259 57 GGLIALDSVRPVELWRKTLNNVPKE---VDCGL----IDINLDGVLDCIVIA-DNGYLAVLSQATGNLLWRKTNNGY-KD 127 (848)
Q Consensus 57 ~gvlAlsG~nGs~LW~~~l~~ev~~---i~C~l----~dl~~dg~~dCLl~G-r~g~L~AIn~~TG~~lW~~~~~~~-~~ 127 (848)
+.|.||+-.+|+++|+......... ..|.. +-+. .+-|++| ..|.|.|+|..||+.+|+++.... ..
T Consensus 76 ~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~ 151 (668)
T 1kv9_A 76 SRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALW----GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKP 151 (668)
T ss_dssp GEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEE----BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSS
T ss_pred CeEEEEECCCChhceEECCCCCccccccccccCCccceEEE----CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCc
Confidence 4799999999999999976543221 12321 1111 2345555 478899999999999999875321 11
Q ss_pred cc-cccceeccCCCCCCccceEEEeecCCc---eeEEEEEeCCCCcccCC
Q psy12259 128 GK-MKFPLIVDDLTGDGVNDLVLISYMGPS---KYQLALLSGSNGVQIGT 173 (848)
Q Consensus 128 ~~-~~~P~lvPDlDgDgV~DLLv~t~~~~~---~~~l~LiSGkTG~~IG~ 173 (848)
.. ...|++. .|.+++.....+ .+.+.-+.-+||+++=+
T Consensus 152 ~~~~~~P~v~--------~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~ 193 (668)
T 1kv9_A 152 YSITGAPRVV--------KGKVIIGNGGAEYGVRGFVSAYDADTGKLAWR 193 (668)
T ss_dssp CBCCSCCEEE--------TTEEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred ceecCCCEEE--------CCEEEEeCCCCCcCCCCEEEEEECCCCcEEEE
Confidence 12 2356652 245555443211 37899999999988643
No 12
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=94.75 E-value=0.26 Score=56.66 Aligned_cols=66 Identities=11% Similarity=0.043 Sum_probs=42.3
Q ss_pred ceEEEEeCCCcceeeeeccCCCCC---cccccceecc--CCCCCCccceEEEeecCCceeEEEEEeCCCCcccCC
Q psy12259 104 GYLAVLSQATGNLLWRKTNNGYKD---GKMKFPLIVD--DLTGDGVNDLVLISYMGPSKYQLALLSGSNGVQIGT 173 (848)
Q Consensus 104 g~L~AIn~~TG~~lW~~~~~~~~~---~~~~~P~lvP--DlDgDgV~DLLv~t~~~~~~~~l~LiSGkTG~~IG~ 173 (848)
+.+.|+|..||+.+|++....... .....|+++. +.||.. .+++++...+ +.+..+.-.||++|-+
T Consensus 291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~-~~~v~~~~~~---G~l~~lD~~tG~~lw~ 361 (582)
T 1flg_A 291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKI-VKATAHADRN---GFFYVVDRSNGKLQNA 361 (582)
T ss_dssp SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCE-EEEEEEECTT---SEEEEEETTTCCEEEE
T ss_pred ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCE-EEEEEEECCC---ceEEEEECCCCCEecc
Confidence 578999999999999985432111 1134677642 234432 2455443322 8899999999998754
No 13
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=94.74 E-value=0.22 Score=57.04 Aligned_cols=113 Identities=18% Similarity=0.127 Sum_probs=66.7
Q ss_pred ccEEEEeCCCCceeeEeecCCCcEEe----------------eecCc-------c---------cCCCCCccEEEEccC-
Q psy12259 57 GGLIALDSVRPVELWRKTLNNVPKEV----------------DCGLI-------D---------INLDGVLDCIVIADN- 103 (848)
Q Consensus 57 ~gvlAlsG~nGs~LW~~~l~~ev~~i----------------~C~l~-------d---------l~~dg~~dCLl~Gr~- 103 (848)
+.|.|++-.+|+++|+..+......+ +++.. . +.-|...+.|.+|..
T Consensus 176 g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~ 255 (571)
T 2ad6_A 176 GAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGN 255 (571)
T ss_dssp CEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCC
T ss_pred CEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCC
Confidence 58999999999999998876442100 00000 0 000122356666542
Q ss_pred ----------------ceEEEEeCCCcceeeeeccCCCCC---cccccceeccCCCCCCc-cceEEEeecCCceeEEEEE
Q psy12259 104 ----------------GYLAVLSQATGNLLWRKTNNGYKD---GKMKFPLIVDDLTGDGV-NDLVLISYMGPSKYQLALL 163 (848)
Q Consensus 104 ----------------g~L~AIn~~TG~~lW~~~~~~~~~---~~~~~P~lvPDlDgDgV-~DLLv~t~~~~~~~~l~Li 163 (848)
+.+.|+|..||+.+|++....... .....|+++ |...||- ..++++... .+.+..+
T Consensus 256 ~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~-~~~~~G~~~~~v~~~~~---~G~l~~l 331 (571)
T 2ad6_A 256 PAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLT-DQPVNGKMTPLLSHIDR---NGILYTL 331 (571)
T ss_dssp CSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEE-EEEETTEEEEEEEEECT---TSEEEEE
T ss_pred CccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEE-ecccCCcEEEEEEEeCC---CcEEEEE
Confidence 358999999999999986542111 123467663 2222442 244444322 2789999
Q ss_pred eCCCCcccCC
Q psy12259 164 SGSNGVQIGT 173 (848)
Q Consensus 164 SGkTG~~IG~ 173 (848)
.-+||+++.+
T Consensus 332 D~~tG~~~w~ 341 (571)
T 2ad6_A 332 NRENGNLIVA 341 (571)
T ss_dssp ETTTCCEEEE
T ss_pred ECCCCCEEee
Confidence 9999988754
No 14
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=94.55 E-value=0.12 Score=60.09 Aligned_cols=121 Identities=17% Similarity=0.206 Sum_probs=73.2
Q ss_pred cEEEEeCCCCceeeEeecCCCcEEe--------------eecCcccCCCCCccEEEEccC--ceEEEEeCCCcc--eeee
Q psy12259 58 GLIALDSVRPVELWRKTLNNVPKEV--------------DCGLIDINLDGVLDCIVIADN--GYLAVLSQATGN--LLWR 119 (848)
Q Consensus 58 gvlAlsG~nGs~LW~~~l~~ev~~i--------------~C~l~dl~~dg~~dCLl~Gr~--g~L~AIn~~TG~--~lW~ 119 (848)
.|..++|.+|++++..+...+--.+ .-+..+++++..+.++.=|.. ..++|.|..+|+ .+|+
T Consensus 230 yL~vfdG~TG~~l~~~~~~p~rg~~~~WGD~ygnR~drf~~~vayLDG~~Ps~v~~rGyYtr~~v~A~d~~~~~L~~~W~ 309 (591)
T 2zux_A 230 YLTVFQGSTGKELVTANFEPARGNVSDWGDSYGNRVDRFLAGIAYLDGQRPSLIMTRGYYAKTMLVAYNFRDGKLSKLWT 309 (591)
T ss_dssp EEEEEETTTCCEEEEEECSSCCCCGGGGTCSSSSGGGCEEEEEECTTSSSCEEEEEECCSSSCEEEEEEEETTEEEEEEE
T ss_pred EEEEEeCCCCCEEecccCCCCCCcccccccccccccccceeeEEECCCCCceEEEeccccceeEEEEEECCCCceEEEEE
Confidence 6899999999999998875321111 112366776643344333433 458999998886 5999
Q ss_pred eccCCCCCcccc----cceeccCCCCCCccceEEEee-cCCceeEEEEEeCCCCcccCCccccCCccc
Q psy12259 120 KTNNGYKDGKMK----FPLIVDDLTGDGVNDLVLISY-MGPSKYQLALLSGSNGVQIGTPLVKEDCDQ 182 (848)
Q Consensus 120 ~~~~~~~~~~~~----~P~lvPDlDgDgV~DLLv~t~-~~~~~~~l~LiSGkTG~~IG~~v~l~~~~~ 182 (848)
++.....+..+. -.+-|-|+||||..+|+.-+. .+.. ++++--+|- | -|+.+.+.++++
T Consensus 310 ~d~~~~~~~~~~gqg~h~~~vaDVDgDG~dEIv~Gs~~iD~d-G~~L~st~~-g--HGDa~hv~dldP 373 (591)
T 2zux_A 310 LDSSKSGNEAFAGQGNHNLSIADVDGDGKDEIIFGSMAVDHD-GKGMYSTGL-G--HGDALHTGDLDP 373 (591)
T ss_dssp EETTSTTCGGGSSCCCSCCEEECCSSSSSCEEEETTEEECTT-SCEEEECSC-C--CCSCEEEECCCT
T ss_pred ecCCCCCcccccccCCCCCeeEeCCCCCCceEEEeeeEECCC-CCEeeeCCC-C--CCCeeEEeecCC
Confidence 976532222221 233499999999999996533 2222 555444332 2 245455444544
No 15
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=94.54 E-value=0.13 Score=59.96 Aligned_cols=105 Identities=18% Similarity=0.224 Sum_probs=66.4
Q ss_pred ccEEEEeCCCCceeeEeecCCCcEE--eeec-----CcccCCCCCccEEEE-ccCceEEEEeCCCcceeeeeccC-CCC-
Q psy12259 57 GGLIALDSVRPVELWRKTLNNVPKE--VDCG-----LIDINLDGVLDCIVI-ADNGYLAVLSQATGNLLWRKTNN-GYK- 126 (848)
Q Consensus 57 ~gvlAlsG~nGs~LW~~~l~~ev~~--i~C~-----l~dl~~dg~~dCLl~-Gr~g~L~AIn~~TG~~lW~~~~~-~~~- 126 (848)
+.|.||+-.+|+++|+......... ..|. ..-+. .+-|++ ...|.|.|+|..||+.+|+++.. ...
T Consensus 87 ~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~----~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~ 162 (677)
T 1kb0_A 87 SVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALW----KGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKG 162 (677)
T ss_dssp GCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEE----TTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCS
T ss_pred CeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEE----CCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCc
Confidence 4789999999999999987654221 1121 12221 123444 45788999999999999998754 211
Q ss_pred -CcccccceeccCCCCCCccceEEEeecCCc---eeEEEEEeCCCCcccCC
Q psy12259 127 -DGKMKFPLIVDDLTGDGVNDLVLISYMGPS---KYQLALLSGSNGVQIGT 173 (848)
Q Consensus 127 -~~~~~~P~lvPDlDgDgV~DLLv~t~~~~~---~~~l~LiSGkTG~~IG~ 173 (848)
......|++. .|.+++.....+ .+.+..+.-+||+++=+
T Consensus 163 ~~~~~~~p~v~--------~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~ 205 (677)
T 1kb0_A 163 SLTITGAPRVF--------KGKVIIGNGGAEYGVRGYITAYDAETGERKWR 205 (677)
T ss_dssp SCBCCSCCEEE--------TTEEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred CcccccCcEEE--------CCEEEEEecccccCCCCEEEEEECCCCcEEEE
Confidence 1112355552 245655443211 37899999999998643
No 16
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=94.40 E-value=0.16 Score=58.89 Aligned_cols=107 Identities=21% Similarity=0.304 Sum_probs=65.1
Q ss_pred ccEEEEeC-CCCceeeEeecCCCcEE---eeec----Cccc--CCCCCcc-EEEEccCceEEEEeCCCcceeeeeccCCC
Q psy12259 57 GGLIALDS-VRPVELWRKTLNNVPKE---VDCG----LIDI--NLDGVLD-CIVIADNGYLAVLSQATGNLLWRKTNNGY 125 (848)
Q Consensus 57 ~gvlAlsG-~nGs~LW~~~l~~ev~~---i~C~----l~dl--~~dg~~d-CLl~Gr~g~L~AIn~~TG~~lW~~~~~~~ 125 (848)
+.|.||+. .+|+++|+......... .-|. .+-+ .++..+. .++....|.|.|+|..||+.+|+......
T Consensus 73 ~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~ 152 (599)
T 1w6s_A 73 NNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDI 152 (599)
T ss_dssp TCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCCG
T ss_pred CEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecCCCC
Confidence 47999999 99999999987654321 1222 1222 2111011 33444578899999999999999865421
Q ss_pred C-C-cccccceeccCCCCCCccceEEEeecCCc---eeEEEEEeCCCCccc
Q psy12259 126 K-D-GKMKFPLIVDDLTGDGVNDLVLISYMGPS---KYQLALLSGSNGVQI 171 (848)
Q Consensus 126 ~-~-~~~~~P~lvPDlDgDgV~DLLv~t~~~~~---~~~l~LiSGkTG~~I 171 (848)
. . .....|++. .|.+++.....+ .+.+.-+.-+||+++
T Consensus 153 ~~~~~~~ssP~v~--------~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~ 195 (599)
T 1w6s_A 153 KVGSTLTIAPYVV--------KDKVIIGSSGAELGVRGYLTAYDVKTGEQV 195 (599)
T ss_dssp GGTCBCCSCCEEE--------TTEEEECCBCGGGTCCCEEEEEETTTCCEE
T ss_pred CccceeecCCEEE--------CCEEEEEecccccCCCCeEEEEECCCCcEE
Confidence 1 1 123466663 135555432111 278999999999885
No 17
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=94.14 E-value=0.16 Score=59.35 Aligned_cols=105 Identities=17% Similarity=0.236 Sum_probs=65.2
Q ss_pred ccEEEEeCCCCceeeEeecCCCcE--E-eeecC----cccCCCCCccEEEEc-cCceEEEEeCCCcceeeeeccC-CCC-
Q psy12259 57 GGLIALDSVRPVELWRKTLNNVPK--E-VDCGL----IDINLDGVLDCIVIA-DNGYLAVLSQATGNLLWRKTNN-GYK- 126 (848)
Q Consensus 57 ~gvlAlsG~nGs~LW~~~l~~ev~--~-i~C~l----~dl~~dg~~dCLl~G-r~g~L~AIn~~TG~~lW~~~~~-~~~- 126 (848)
+.|.||+-.+|+++|+........ . .-|.. .-+. .+-|++| ..|.|.|+|..||+.+|++... ...
T Consensus 80 ~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~ 155 (689)
T 1yiq_A 80 SVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVW----KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKR 155 (689)
T ss_dssp GCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEE----TTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTS
T ss_pred CeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEE----CCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCC
Confidence 479999999999999987653311 1 11221 1111 1334554 4789999999999999998754 211
Q ss_pred Ccc-cccceeccCCCCCCccceEEEeecCC---ceeEEEEEeCCCCcccCC
Q psy12259 127 DGK-MKFPLIVDDLTGDGVNDLVLISYMGP---SKYQLALLSGSNGVQIGT 173 (848)
Q Consensus 127 ~~~-~~~P~lvPDlDgDgV~DLLv~t~~~~---~~~~l~LiSGkTG~~IG~ 173 (848)
... ...|++. .|.+++..... ..+.+..+.-+||+++=+
T Consensus 156 ~~~~~~sP~v~--------~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~ 198 (689)
T 1yiq_A 156 SYTITGAPRVV--------NGKVVIGNGGAEFGVRGYVTAYDAETGKEAWR 198 (689)
T ss_dssp CCBCCSCCEEE--------TTEEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred CccccCCcEEE--------CCEEEEEeCCCccCCCCEEEEEECCCCcEEEE
Confidence 112 2356653 24555543221 137899999999987643
No 18
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=94.06 E-value=0.14 Score=58.48 Aligned_cols=104 Identities=20% Similarity=0.273 Sum_probs=65.3
Q ss_pred ccEEEEeC-CCCceeeEeecCCCc--EE-eeecC----cccCCCCCccEEEEc-cCceEEEEeCCCcceeeeeccCCCC-
Q psy12259 57 GGLIALDS-VRPVELWRKTLNNVP--KE-VDCGL----IDINLDGVLDCIVIA-DNGYLAVLSQATGNLLWRKTNNGYK- 126 (848)
Q Consensus 57 ~gvlAlsG-~nGs~LW~~~l~~ev--~~-i~C~l----~dl~~dg~~dCLl~G-r~g~L~AIn~~TG~~lW~~~~~~~~- 126 (848)
+.|.|++- .+|+++|+..+.... .. ..|.. +-+. .+-|+++ ..|.|.|+|..||+.+|+.+.....
T Consensus 73 ~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~ 148 (571)
T 2ad6_A 73 NNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYG----AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKV 148 (571)
T ss_dssp TCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEE----TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGG
T ss_pred CEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEE----CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCc
Confidence 47999999 999999999876532 11 12221 1121 1345554 5688999999999999998654211
Q ss_pred C-cccccceeccCCCCCCccceEEEeecCCc---eeEEEEEeCCCCcccC
Q psy12259 127 D-GKMKFPLIVDDLTGDGVNDLVLISYMGPS---KYQLALLSGSNGVQIG 172 (848)
Q Consensus 127 ~-~~~~~P~lvPDlDgDgV~DLLv~t~~~~~---~~~l~LiSGkTG~~IG 172 (848)
. .....|++. .|.+++.....+ .+.+.-+.-+||+++=
T Consensus 149 ~~~~~~~P~v~--------~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W 190 (571)
T 2ad6_A 149 GSTLTQAPFVA--------KDTVLMGCSGAELGVRGAVNAFDLKTGELKW 190 (571)
T ss_dssp TCBCCSCCEEE--------TTEEEEECBCGGGTCCCEEEEEETTTCCEEE
T ss_pred cceeccCCEEE--------CCEEEEEecCCccCCCCEEEEEECCCCcEEE
Confidence 1 123466652 235555443211 2789999999999864
No 19
>2zuy_A YESX protein; beta-propeller, lyase; 1.65A {Bacillus subtilis}
Probab=93.68 E-value=0.17 Score=59.00 Aligned_cols=120 Identities=14% Similarity=0.089 Sum_probs=72.2
Q ss_pred cEEEEeCCCCceeeEeecCCCcE---------------EeeecCcccCCCCCccEEEEccC--ceEEEEeCCCc--ceee
Q psy12259 58 GLIALDSVRPVELWRKTLNNVPK---------------EVDCGLIDINLDGVLDCIVIADN--GYLAVLSQATG--NLLW 118 (848)
Q Consensus 58 gvlAlsG~nGs~LW~~~l~~ev~---------------~i~C~l~dl~~dg~~dCLl~Gr~--g~L~AIn~~TG--~~lW 118 (848)
.|..++|.+|+.|+..+...+-- ..-| ..+++++..+.++.-|.. ..++|.|...| +.+|
T Consensus 234 yL~vfdG~TG~~l~t~~~~p~rg~~~~WGD~yGnR~drf~~~-vayLDG~~Ps~v~~rG~Ytr~~v~A~d~~~g~L~~~W 312 (620)
T 2zuy_A 234 YLTVFKGETGEALTTVEYEPPRGKLEDWGDGYGNRMDRFLAG-TAYLDGERPSLVMARGYYTRTVLVAYDFRNGRLKKRW 312 (620)
T ss_dssp EEEEEETTTCCEEEEEECSSCCCSGGGGTSSSSTTTTCEEEE-EECTTCC-CEEEEEECSSSSCEEEEEEEETTEEEEEE
T ss_pred EEEEEcCCCcceeeecccCCCcCcccccccccccccccccee-EEecCCCCceEEEecCcccceeEEEEEccCCceeeee
Confidence 78999999999999988743211 1222 256666644444444544 45889998888 5799
Q ss_pred eeccCCCCCcccc----cceeccCCCCCCccceEEEee-cCCceeEEEEEeCCCCcccCCccccCCccc
Q psy12259 119 RKTNNGYKDGKMK----FPLIVDDLTGDGVNDLVLISY-MGPSKYQLALLSGSNGVQIGTPLVKEDCDQ 182 (848)
Q Consensus 119 ~~~~~~~~~~~~~----~P~lvPDlDgDgV~DLLv~t~-~~~~~~~l~LiSGkTG~~IG~~v~l~~~~~ 182 (848)
.++.....+..+. ..+-+-||||||..+|++-+. .+. .++++--+|- | -|....+.++++
T Consensus 313 ~~ds~~~~~~~~~gqg~H~~svaDVDGDG~dEIv~Gs~~iD~-dG~~L~st~~-g--HGDa~hv~d~dP 377 (620)
T 2zuy_A 313 VFDSNQPGHEAYAGQGNHSLSVADVDGDGKDEIIYGAMAVDH-DGTGLYSTGL-G--HGDAMHVGDLDP 377 (620)
T ss_dssp EEETTSTTCGGGTTCCCSSCEEECCSSSSSCEEEETTEEECT-TSSEEEECSC-C--CCSCEEEECSCT
T ss_pred EecCCCCcccccccccCcCceEEecCCCCceeEEEeeeEECC-CCCEEeecCC-C--CCceeEEEecCC
Confidence 9976432122221 334499999999999997543 222 2555444442 2 244444444444
No 20
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=93.59 E-value=0.27 Score=57.34 Aligned_cols=65 Identities=18% Similarity=0.254 Sum_probs=41.9
Q ss_pred eEEEEeCCCcceeeeeccCCCC--C-cccccceeccCCCCCCc-cceEEEeecCCceeEEEEEeCCCCcccCC
Q psy12259 105 YLAVLSQATGNLLWRKTNNGYK--D-GKMKFPLIVDDLTGDGV-NDLVLISYMGPSKYQLALLSGSNGVQIGT 173 (848)
Q Consensus 105 ~L~AIn~~TG~~lW~~~~~~~~--~-~~~~~P~lvPDlDgDgV-~DLLv~t~~~~~~~~l~LiSGkTG~~IG~ 173 (848)
.+.|+|..||+.+|++...... . .....|+++ |..-||- .++|++...+ +.+.++.-+||++|.+
T Consensus 284 sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~-~~~~dG~~~~~l~~~~~~---G~l~~lD~~tG~~l~~ 352 (677)
T 1kb0_A 284 SIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILA-DIKIAGKPRKVILHAPKN---GFFFVLDRTNGKFISA 352 (677)
T ss_dssp EEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEE-EEEETTEEEEEEEECCTT---SEEEEEETTTCCEEEE
T ss_pred EEEEEECCCCCEEEEEecCCCcccccccCCCcEEE-ecccCCcEeeEEEEECCC---CEEEEEECCCCCEecc
Confidence 4899999999999998643211 1 113466663 3322442 2555543332 8899999999999765
No 21
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=90.64 E-value=0.27 Score=52.53 Aligned_cols=93 Identities=10% Similarity=-0.010 Sum_probs=47.7
Q ss_pred ccEEEEeCCCCceeeEeecCCCcEEeeecCcccCCCCCccEEEE-ccCceEEEEeCCCcceeeeeccCCCCCccccccee
Q psy12259 57 GGLIALDSVRPVELWRKTLNNVPKEVDCGLIDINLDGVLDCIVI-ADNGYLAVLSQATGNLLWRKTNNGYKDGKMKFPLI 135 (848)
Q Consensus 57 ~gvlAlsG~nGs~LW~~~l~~ev~~i~C~l~dl~~dg~~dCLl~-Gr~g~L~AIn~~TG~~lW~~~~~~~~~~~~~~P~l 135 (848)
+.|.|++-.+|+.+|.......... | + + .+-|++ +..|.+.|+|..||+.+|+++... ...|++
T Consensus 102 g~v~a~D~~tG~~~w~~~~~~~~~~--~--p----~--~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~-----~~~~~~ 166 (369)
T 2hz6_A 102 DIWYVIDLLTGEKQQTLSSAFADSL--S--P----S--TSLLYLGRTEYTITMYDTKTRELRWNATYFD-----YAASLP 166 (369)
T ss_dssp EEEEEECCC--------------------------------EEEEEEEEEEECCCSSSSSCCCEEEEEE-----ECCBCC
T ss_pred CEEEEEECCCCcEEEEecCCCcccc--c--c----c--CCEEEEEecCCEEEEEECCCCCEEEeEeccc-----ccCccc
Confidence 3588999999999999876542111 1 1 1 133444 456789999999999999976332 223443
Q ss_pred ccCCCCCCcc-ceEEEeecCCceeEEEEEeCCCCccc
Q psy12259 136 VDDLTGDGVN-DLVLISYMGPSKYQLALLSGSNGVQI 171 (848)
Q Consensus 136 vPDlDgDgV~-DLLv~t~~~~~~~~l~LiSGkTG~~I 171 (848)
++|++. +.+++...+ +.+..+.-+||+++
T Consensus 167 ----~~~~~~~~~v~~~~~d---g~v~a~d~~tG~~~ 196 (369)
T 2hz6_A 167 ----EDDVDYKMSHFVSNGD---GLVVTVDSESGDVL 196 (369)
T ss_dssp ----CCCTTCCCCEEEEETS---CEEEEECTTTCCEE
T ss_pred ----cCCccccceEEEECCC---CEEEEEECCCCcEE
Confidence 344433 344443332 67899999999874
No 22
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=90.63 E-value=0.3 Score=52.08 Aligned_cols=74 Identities=15% Similarity=0.249 Sum_probs=48.9
Q ss_pred ccEEEEeCCCCceeeEeecCCCcEEeeecCcccCCCC--CccEEEEccCceEEEEeCCCcceeeeeccCCCCCcccccce
Q psy12259 57 GGLIALDSVRPVELWRKTLNNVPKEVDCGLIDINLDG--VLDCIVIADNGYLAVLSQATGNLLWRKTNNGYKDGKMKFPL 134 (848)
Q Consensus 57 ~gvlAlsG~nGs~LW~~~l~~ev~~i~C~l~dl~~dg--~~dCLl~Gr~g~L~AIn~~TG~~lW~~~~~~~~~~~~~~P~ 134 (848)
+.|.|++-.+|+.+|+..... ....-+..+. ....++....|.+.|+|..||+.+|+.+. ..|+
T Consensus 140 g~v~a~d~~tG~~~W~~~~~~------~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~--------~~pv 205 (369)
T 2hz6_A 140 YTITMYDTKTRELRWNATYFD------YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY--------ASPV 205 (369)
T ss_dssp EEEECCCSSSSSCCCEEEEEE------ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEEC--------SSCE
T ss_pred CEEEEEECCCCCEEEeEeccc------ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecC--------CCce
Confidence 356777778999999976432 1112222111 02344556778999999999999999762 3566
Q ss_pred e-ccCCCCCCc
Q psy12259 135 I-VDDLTGDGV 144 (848)
Q Consensus 135 l-vPDlDgDgV 144 (848)
+ ++.+++||+
T Consensus 206 ~~~~~~~~dg~ 216 (369)
T 2hz6_A 206 VAFYVWQREGL 216 (369)
T ss_dssp EEEEECTTSSC
T ss_pred EEEEEecCCce
Confidence 6 777888875
No 23
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=90.18 E-value=0.74 Score=50.05 Aligned_cols=106 Identities=16% Similarity=0.122 Sum_probs=63.4
Q ss_pred cccEEEEeCCCCceeeEeecC--CCcEEeeecCcccCCCCCccEEEE--ccCceEEEEeCCCcceeeeeccCCCCCcccc
Q psy12259 56 GGGLIALDSVRPVELWRKTLN--NVPKEVDCGLIDINLDGVLDCIVI--ADNGYLAVLSQATGNLLWRKTNNGYKDGKMK 131 (848)
Q Consensus 56 ~~gvlAlsG~nGs~LW~~~l~--~ev~~i~C~l~dl~~dg~~dCLl~--Gr~g~L~AIn~~TG~~lW~~~~~~~~~~~~~ 131 (848)
.|.|.||+-.+|+.+|+..+. ..+....-.. ...+ ..-+++ ...|.|.|+|..+|+..|.+....+. ..
T Consensus 19 dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~--~~~~--~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv---~~ 91 (339)
T 2be1_A 19 EGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPS--RLET--YETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV---ST 91 (339)
T ss_dssp TSCEEEEETTTTEEEEEECGGGSCCSEECCCSC--TTTS--SEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH---TT
T ss_pred CCeEEEEECCCCcEEEEecCCccCCcEEecCCc--cccC--CcEEEEEECCCCEEEEEECCCCcEEeeeccccce---ec
Confidence 368999999999999999876 2222221110 0001 144445 36899999999999999987654321 12
Q ss_pred cceec---cCCCCCC---ccceEEEeecCCceeEEEEEeCCCCccc
Q psy12259 132 FPLIV---DDLTGDG---VNDLVLISYMGPSKYQLALLSGSNGVQI 171 (848)
Q Consensus 132 ~P~lv---PDlDgDg---V~DLLv~t~~~~~~~~l~LiSGkTG~~I 171 (848)
+|+.. |=+|.=| ..+.+.+ +.. .++++-|.=+||+++
T Consensus 92 SP~~~~~~pvv~~~~~~~~~g~Vy~-Gs~--~g~l~ald~~tG~~~ 134 (339)
T 2be1_A 92 SPLHLKTNIVVNDSGKIVEDEKVYT-GSM--RTIMYTINMLNGEII 134 (339)
T ss_dssp CSEEEECC----------CCEEEEE-CEE--EEEEEEEETTTCCEE
T ss_pred cccccCCCceeecccccccCCEEEE-Eec--CCEEEEEECCCCcEE
Confidence 45441 1111000 1234443 322 389999999999984
No 24
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=89.89 E-value=0.2 Score=54.44 Aligned_cols=109 Identities=6% Similarity=0.025 Sum_probs=55.8
Q ss_pred cccEEEEeCCCCceeeEeecCCCcEEeeecC---ccc---CC-CCCccEEEEccCceEEEEeCCCcceeeeeccCCCCC-
Q psy12259 56 GGGLIALDSVRPVELWRKTLNNVPKEVDCGL---IDI---NL-DGVLDCIVIADNGYLAVLSQATGNLLWRKTNNGYKD- 127 (848)
Q Consensus 56 ~~gvlAlsG~nGs~LW~~~l~~ev~~i~C~l---~dl---~~-dg~~dCLl~Gr~g~L~AIn~~TG~~lW~~~~~~~~~- 127 (848)
.|.|.|++-.+|...|...+...+..--|.+ +-+ +. .....-++.+..|-+.|||..||+.+|++.......
T Consensus 66 dG~l~a~~~~~G~~~~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~ 145 (339)
T 2be1_A 66 DGNIYYFNAHQGLQKLPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGY 145 (339)
T ss_dssp TTEEEEEETTTEEEEEEEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC-
T ss_pred CCEEEEEECCCCcEEeeeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCccc
Confidence 5688999989998889877764432111111 111 00 011234556788899999999999999997542110
Q ss_pred ---cccccceeccCCCCCCccceEEEeecCCceeEEEEEeCCCCc
Q psy12259 128 ---GKMKFPLIVDDLTGDGVNDLVLISYMGPSKYQLALLSGSNGV 169 (848)
Q Consensus 128 ---~~~~~P~lvPDlDgDgV~DLLv~t~~~~~~~~l~LiSGkTG~ 169 (848)
.+...|.+. |++.|...+.|++... ...+-+-|+||.
T Consensus 146 ~~~~~e~~~~~~-d~~~d~~~~~v~ig~~----~y~v~~~~~sG~ 185 (339)
T 2be1_A 146 FGSQSVDCSPEE-KIKLQECENMIVIGKT----IFELGIHSYDGA 185 (339)
T ss_dssp --------------------CCEEEEEEE----EEECEECCTTSC
T ss_pred cccccccccccc-ccccccCCCeEEEecc----eEEEEEECCCCC
Confidence 011123332 6655555566666432 224444558885
No 25
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=89.81 E-value=2.3 Score=43.56 Aligned_cols=95 Identities=13% Similarity=0.196 Sum_probs=58.0
Q ss_pred ccEEEEeCCCCceeeEeecCC--CcEEeeecCcccCCCCCccEEEEccCceEEEEeCCCcceeeeeccCCCCCcccccce
Q psy12259 57 GGLIALDSVRPVELWRKTLNN--VPKEVDCGLIDINLDGVLDCIVIADNGYLAVLSQATGNLLWRKTNNGYKDGKMKFPL 134 (848)
Q Consensus 57 ~gvlAlsG~nGs~LW~~~l~~--ev~~i~C~l~dl~~dg~~dCLl~Gr~g~L~AIn~~TG~~lW~~~~~~~~~~~~~~P~ 134 (848)
+.|.+++-.+|+++|+.+... ++..+... + +| .=|+.+ .+-+.++|+ +|+.+|++..... ..+..+.
T Consensus 15 ~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~---p--dG--~ilvs~-~~~V~~~d~-~G~~~W~~~~~~~--~~~~~~~ 83 (276)
T 3no2_A 15 NKIAIINKDTKEIVWEYPLEKGWECNSVAAT---K--AG--EILFSY-SKGAKMITR-DGRELWNIAAPAG--CEMQTAR 83 (276)
T ss_dssp SEEEEEETTTTEEEEEEECCTTCCCCEEEEC---T--TS--CEEEEC-BSEEEEECT-TSCEEEEEECCTT--CEEEEEE
T ss_pred CEEEEEECCCCeEEEEeCCCccCCCcCeEEC---C--CC--CEEEeC-CCCEEEECC-CCCEEEEEcCCCC--ccccccE
Confidence 578899988999999999764 44444433 2 33 233344 445788999 9999999875321 1233333
Q ss_pred eccCCCCCCccceEEEeecCCceeEEEEEeCCCCccc
Q psy12259 135 IVDDLTGDGVNDLVLISYMGPSKYQLALLSGSNGVQI 171 (848)
Q Consensus 135 lvPDlDgDgV~DLLv~t~~~~~~~~l~LiSGkTG~~I 171 (848)
.+|| | .++++..++ ..+++.++ .+|+++
T Consensus 84 ~~~d----G--~~lv~~~~~--~~~v~~vd-~~Gk~l 111 (276)
T 3no2_A 84 ILPD----G--NALVAWCGH--PSTILEVN-MKGEVL 111 (276)
T ss_dssp ECTT----S--CEEEEEEST--TEEEEEEC-TTSCEE
T ss_pred ECCC----C--CEEEEecCC--CCEEEEEe-CCCCEE
Confidence 4443 2 455554442 15666665 467654
No 26
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=87.28 E-value=1.7 Score=44.54 Aligned_cols=59 Identities=17% Similarity=0.222 Sum_probs=40.1
Q ss_pred ccEEEEeCCCCceeeEeecCCCcEEeeecCcccCCCCCccEEEEcc-CceEEEEeCCCcceeeeeccC
Q psy12259 57 GGLIALDSVRPVELWRKTLNNVPKEVDCGLIDINLDGVLDCIVIAD-NGYLAVLSQATGNLLWRKTNN 123 (848)
Q Consensus 57 ~gvlAlsG~nGs~LW~~~l~~ev~~i~C~l~dl~~dg~~dCLl~Gr-~g~L~AIn~~TG~~lW~~~~~ 123 (848)
+.|.+++-. |+.+|+......+..+. ... ++ .-|+++. .+-+.++|+.||+.+|++...
T Consensus 146 ~~v~~~d~~-G~~~w~~~~~~~~~~~~---~~~--~g--~~~v~~~~~~~v~~~d~~tG~~~w~~~~~ 205 (276)
T 3no2_A 146 SEVREIAPN-GQLLNSVKLSGTPFSSA---FLD--NG--DCLVACGDAHCFVQLNLESNRIVRRVNAN 205 (276)
T ss_dssp TEEEEECTT-SCEEEEEECSSCCCEEE---ECT--TS--CEEEECBTTSEEEEECTTTCCEEEEEEGG
T ss_pred CEEEEECCC-CCEEEEEECCCCcccee---EcC--CC--CEEEEeCCCCeEEEEeCcCCcEEEEecCC
Confidence 346677766 99999988765554421 122 22 3455544 456899999999999998754
No 27
>3hx6_A Type 4 fimbrial biogenesis protein PILY1; beta propeller, pilus protein, cell adhesion; 2.10A {Pseudomonas aeruginosa}
Probab=82.36 E-value=14 Score=43.16 Aligned_cols=91 Identities=21% Similarity=0.285 Sum_probs=53.6
Q ss_pred cEEEEeCCC---CceeeEeecCCCcE--EeeecCcccC--CCCCccEEEEcc------CceEEEEeCCCcceeeeeccCC
Q psy12259 58 GLIALDSVR---PVELWRKTLNNVPK--EVDCGLIDIN--LDGVLDCIVIAD------NGYLAVLSQATGNLLWRKTNNG 124 (848)
Q Consensus 58 gvlAlsG~n---Gs~LW~~~l~~ev~--~i~C~l~dl~--~dg~~dCLl~Gr------~g~L~AIn~~TG~~lW~~~~~~ 124 (848)
++-||+=++ .++||+........ ..-.. +.+. .++.+.-|+.+- ..-|-++|..||+.+|+++...
T Consensus 165 ~~yALDVT~P~~p~~LWe~~~~~~~~LG~t~s~-P~I~~~~~g~w~~vfG~GY~~~~~~~~Lyv~d~~tG~li~~i~~~~ 243 (570)
T 3hx6_A 165 GLFALDVTDPANIKLLWEIGVDQEPDLGYSFPK-PTVARLHNGKWAVVTGNGYSSMNDKAALLIIDMETGAITRKLEVTG 243 (570)
T ss_dssp EEEEEECSSGGGCEEEEEEETTTCTTCCBCCSC-CEEEECTTSSEEEEEECCBSCTTCCEEEEEEETTTCCEEEEEEECC
T ss_pred EEEEEECCCCCCCceeEEECCCCccccCccccC-CEEEEecCCCEEEEEccccCCCCCccEEEEEECCCCceEEEEecCC
Confidence 567777555 77899988432110 01111 1111 145565544431 3467789999999999986542
Q ss_pred CC--CcccccceeccCCCCCCccceEEE
Q psy12259 125 YK--DGKMKFPLIVDDLTGDGVNDLVLI 150 (848)
Q Consensus 125 ~~--~~~~~~P~lvPDlDgDgV~DLLv~ 150 (848)
.. ..-+..|. +=|.|+||+.|.+-+
T Consensus 244 ~~~~~~Gls~~~-~~D~d~Dg~~D~~Ya 270 (570)
T 3hx6_A 244 RTGVPNGLSSPR-LADNNSDGVADYAYA 270 (570)
T ss_dssp STTSCCCEEEEE-EECTTSSSBCCEEEE
T ss_pred CCccCCccccce-EEecCCCCceeEEEE
Confidence 11 11133443 569999999998865
No 28
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*
Probab=80.42 E-value=2.7 Score=52.32 Aligned_cols=83 Identities=23% Similarity=0.328 Sum_probs=50.0
Q ss_pred CcccCCCCCccEEEEccCce--------EEEEeCCCcceeeeeccC-CCC----Cccccccee-ccCCCCCCccceEEEe
Q psy12259 86 LIDINLDGVLDCIVIADNGY--------LAVLSQATGNLLWRKTNN-GYK----DGKMKFPLI-VDDLTGDGVNDLVLIS 151 (848)
Q Consensus 86 l~dl~~dg~~dCLl~Gr~g~--------L~AIn~~TG~~lW~~~~~-~~~----~~~~~~P~l-vPDlDgDgV~DLLv~t 151 (848)
..|+++||..|-+++|.++. ........|...|+.... ... .+.+-..+. +.|+||||..||+|.+
T Consensus 445 ~~DvngDG~~DllvvGAP~~~~~~~~G~Vyvy~~~~~~~~~~~~~~l~g~~~~~~~~FG~sva~~gD~NgDG~~Dl~VGA 524 (1095)
T 3k6s_A 445 SVDVDSDGSTDLVLIGAPHYYEQTRGGQVSVCPLPRGWRRWWCDAVLYGEQGHPWGRFGAALTVLGDVNGDKLTDVVIGA 524 (1095)
T ss_dssp EECSSSSSSCCEEEEECSSCCSSCCCBCEEEEECCSSTTCCCSCSSCCCCCSCSSCCBTSCEEEEECSSSSSCCEEEEEC
T ss_pred EEEeCCCCCccEEEECCccccCcCCCCEEEEEEeCCCCcceeeeEEeecccCCccccCccceEeecccCCCCCcCEEEeC
Confidence 47889999999888886643 333333222233543211 111 111223333 6899999999999877
Q ss_pred ecCC-ceeEEEEEeCCCC
Q psy12259 152 YMGP-SKYQLALLSGSNG 168 (848)
Q Consensus 152 ~~~~-~~~~l~LiSGkTG 168 (848)
..++ ..+.+.++-|..+
T Consensus 525 P~~~~~~G~vyi~~g~~~ 542 (1095)
T 3k6s_A 525 PGEEENRGAVYLFHGVLG 542 (1095)
T ss_dssp TTTTTSCCBEEEEEBCSS
T ss_pred CcCCCCCCEEEEecCCCC
Confidence 6542 3478888888754
No 29
>3vi3_A Integrin alpha-5; beta propeller fold, rossman fold, beta sandwich, fibronecti receptor, cell adhesion-immune system complex; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 3vi4_A*
Probab=79.30 E-value=2.2 Score=50.05 Aligned_cols=81 Identities=23% Similarity=0.303 Sum_probs=44.0
Q ss_pred cccCCCCCccEEEEccCc--------------eEEEEeCCCcceeeeeccC--CCCC-ccccccee-ccCCCCCCccceE
Q psy12259 87 IDINLDGVLDCIVIADNG--------------YLAVLSQATGNLLWRKTNN--GYKD-GKMKFPLI-VDDLTGDGVNDLV 148 (848)
Q Consensus 87 ~dl~~dg~~dCLl~Gr~g--------------~L~AIn~~TG~~lW~~~~~--~~~~-~~~~~P~l-vPDlDgDgV~DLL 148 (848)
.|+++||..|- ++|.+. .+....+..+...|+.... +... ..+-..+. +-|+|+||.+||+
T Consensus 292 ~D~NgDG~~DL-vVGAP~~~~~~~~g~~~~~G~VyVy~g~~~g~~~~~~~~l~G~~~~~~FG~sva~~gDlngDG~~Dla 370 (632)
T 3vi3_A 292 TDVNGDGLDDL-LVGAPLLMDRTPDGRPQEVGRVYVYLQHPAGIEPTPTLTLTGHDEFGRFGSSLTPLGDLDQDGYNDVA 370 (632)
T ss_dssp ECCSSSSSCEE-EEEETTCEEECTTCCEEECCEEEEECBCSSCBCSSCSEEEECCSTTCCGGGEEEEEESSSSSSSCEEE
T ss_pred EecCCCCccce-eeecccccccccccccccCCEEEEEEcCCCCccccCceEecCccccCCCceEEEeeeccCCCCCcCEE
Confidence 68999999995 666543 3333332221122322110 1001 11223344 7899999999999
Q ss_pred EEeec--CCceeEEEEEeCCCC
Q psy12259 149 LISYM--GPSKYQLALLSGSNG 168 (848)
Q Consensus 149 v~t~~--~~~~~~l~LiSGkTG 168 (848)
|-+.. ++..+.+.++-|..+
T Consensus 371 VGap~~~~~~~G~Vyv~~G~~~ 392 (632)
T 3vi3_A 371 IGAPFGGETQQGVVFVFPGGPG 392 (632)
T ss_dssp EEETTCSTTSSCEEEEECEETT
T ss_pred EeCCcCCcCCCceEEEEecCCC
Confidence 87752 222467777766544
No 30
>3vi3_A Integrin alpha-5; beta propeller fold, rossman fold, beta sandwich, fibronecti receptor, cell adhesion-immune system complex; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 3vi4_A*
Probab=78.02 E-value=4.5 Score=47.49 Aligned_cols=34 Identities=18% Similarity=0.256 Sum_probs=23.1
Q ss_pred eccCCCCCCccceEEEeecC---------CceeEEEEEeCCCC
Q psy12259 135 IVDDLTGDGVNDLVLISYMG---------PSKYQLALLSGSNG 168 (848)
Q Consensus 135 lvPDlDgDgV~DLLv~t~~~---------~~~~~l~LiSGkTG 168 (848)
.+-|+||||..||+|-+... .+.+.+.++-|..+
T Consensus 290 a~~D~NgDG~~DLvVGAP~~~~~~~~g~~~~~G~VyVy~g~~~ 332 (632)
T 3vi3_A 290 AATDVNGDGLDDLLVGAPLLMDRTPDGRPQEVGRVYVYLQHPA 332 (632)
T ss_dssp EEECCSSSSSCEEEEEETTCEEECTTCCEEECCEEEEECBCSS
T ss_pred EEEecCCCCccceeeecccccccccccccccCCEEEEEEcCCC
Confidence 37899999999998766421 11366777766544
No 31
>3ije_A Integrin alpha-V; integrin structure, activation, EGF domains, FLIM, cell SIGN cell adhesion, cleavage on PAIR of basic residues; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 4g1e_A* 4g1m_A* 1jv2_A* 1l5g_A* 1m1x_A* 1u8c_A*
Probab=77.61 E-value=8 Score=47.58 Aligned_cols=60 Identities=23% Similarity=0.305 Sum_probs=34.4
Q ss_pred cccCCCCCccEEEEc------cCceEEEEeCCCcceeeeeccC--CCCCcccc-cceeccCCCCCCccceEEEe
Q psy12259 87 IDINLDGVLDCIVIA------DNGYLAVLSQATGNLLWRKTNN--GYKDGKMK-FPLIVDDLTGDGVNDLVLIS 151 (848)
Q Consensus 87 ~dl~~dg~~dCLl~G------r~g~L~AIn~~TG~~lW~~~~~--~~~~~~~~-~P~lvPDlDgDgV~DLLv~t 151 (848)
.|.++||..|- ++| ..|.+...++ +| |..... +...++.. ..+.+-|+||||..||+|.+
T Consensus 229 gD~ngDG~~Dl-vvGaP~~~~~~G~V~i~~~-~~---~~~~~~~~g~~~gs~fG~sva~~D~ngDG~~DLvVga 297 (967)
T 3ije_A 229 GDFNGDGIDDF-VSGVPRAARTLGMVYIYDG-KN---MSSLYNFTGEQMAAYFGFSVAATDINGDDYADVFIGA 297 (967)
T ss_dssp ECCSSSSSCEE-EEEETTHHHHTCEEEEECS-SS---SCEEEEEECSSTTSCTTSEEEEECTTSSSCCEEEEEE
T ss_pred EEECCCCCeEE-EEEecccCCCCcEEEEEeC-CC---ceeeeEecccccCCceeEEEEEEecCCCCCceEEEEc
Confidence 57888888774 555 3455555543 23 332111 11122221 23348899999999998875
No 32
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=75.86 E-value=3.7 Score=41.03 Aligned_cols=90 Identities=14% Similarity=0.153 Sum_probs=55.1
Q ss_pred ccEEEEeCCCCceeeEeecCCCcEEeeecCcccCCCCCccEEEEccCceEEEEeCCCcceeeeeccCCCCCcccccceec
Q psy12259 57 GGLIALDSVRPVELWRKTLNNVPKEVDCGLIDINLDGVLDCIVIADNGYLAVLSQATGNLLWRKTNNGYKDGKMKFPLIV 136 (848)
Q Consensus 57 ~gvlAlsG~nGs~LW~~~l~~ev~~i~C~l~dl~~dg~~dCLl~Gr~g~L~AIn~~TG~~lW~~~~~~~~~~~~~~P~lv 136 (848)
++|.+++ .+|+.+|...+.... +.+-..+. .+-|.+|..+ |.++|. +|+.+|+.+.... ....|.+.
T Consensus 40 ~~l~~~d-~~g~~~~~~~~~~~~--~~~~~~~~-----~g~l~v~t~~-l~~~d~-~g~~~~~~~~~~~---~~~~~~~~ 106 (330)
T 3hxj_A 40 KNLYAIN-TDGSVKWFFKSGEII--ECRPSIGK-----DGTIYFGSDK-VYAINP-DGTEKWRFDTKKA---IVSDFTIF 106 (330)
T ss_dssp TTTEEEC-TTSCEEESSCGGGEE--EECCEETT-----TTEECCSSCE-EEEECC-CGGGGGGSCC--------CCEEEE
T ss_pred CEEEEEC-CCCcEEEEEecCCCc--ccceEEec-----CCcEEEecCc-EEEECC-CCcEEEEEECCCC---cccCceEE
Confidence 4789999 999999997764332 22222222 2457888888 999998 9999999764422 12234332
Q ss_pred cCCCCCCccceEEEeecCCceeEEEEEeCCCCccc
Q psy12259 137 DDLTGDGVNDLVLISYMGPSKYQLALLSGSNGVQI 171 (848)
Q Consensus 137 PDlDgDgV~DLLv~t~~~~~~~~l~LiSGkTG~~I 171 (848)
.+.|.+...+ +.+..++-. |.++
T Consensus 107 --------~~~l~v~t~~---~~l~~~d~~-g~~~ 129 (330)
T 3hxj_A 107 --------EDILYVTSMD---GHLYAINTD-GTEK 129 (330)
T ss_dssp --------TTEEEEECTT---SEEEEECTT-SCEE
T ss_pred --------CCEEEEEecC---CEEEEEcCC-CCEE
Confidence 3445444332 457777766 6653
No 33
>3ije_A Integrin alpha-V; integrin structure, activation, EGF domains, FLIM, cell SIGN cell adhesion, cleavage on PAIR of basic residues; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 4g1e_A* 4g1m_A* 1jv2_A* 1l5g_A* 1m1x_A* 1u8c_A*
Probab=73.10 E-value=4.5 Score=49.70 Aligned_cols=80 Identities=24% Similarity=0.333 Sum_probs=44.6
Q ss_pred CcccCCCCCccEEEEccC--------------ceEEEEeCCCcceeeeeccC--CCC-Cccccccee-ccCCCCCCccce
Q psy12259 86 LIDINLDGVLDCIVIADN--------------GYLAVLSQATGNLLWRKTNN--GYK-DGKMKFPLI-VDDLTGDGVNDL 147 (848)
Q Consensus 86 l~dl~~dg~~dCLl~Gr~--------------g~L~AIn~~TG~~lW~~~~~--~~~-~~~~~~P~l-vPDlDgDgV~DL 147 (848)
..|+++||..|- ++|.+ |.....-. +|...|+ +.. +.. .+..-..+. +-|+||||.+||
T Consensus 282 ~~D~ngDG~~DL-vVgaP~~~~~~~~g~~~~~G~v~vy~~-~g~g~f~-~~~l~g~~~~~~fG~sva~~gDlngDG~~Dl 358 (967)
T 3ije_A 282 ATDINGDDYADV-FIGAPLFMDRGSDGKLQEVGQVSVSLQ-RASGDFQ-TTKLNGFEVFARFGSAIAPLGDLDQDGFNDI 358 (967)
T ss_dssp EECTTSSSCCEE-EEEETTCEEECTTSCEEECCEEEEEEC-CSSSCCE-EEEEECSSTTSCTTSEEEEEESTTCSSSCEE
T ss_pred EEecCCCCCceE-EEEcccccccccccccccCCcEEEEEE-CCCCcee-eeeccCccccCCCcceEEeeeccCCCCCcce
Confidence 479999999996 55533 33333322 2333333 111 111 112223333 789999999999
Q ss_pred EEEeec--CCceeEEEEEeCCCC
Q psy12259 148 VLISYM--GPSKYQLALLSGSNG 168 (848)
Q Consensus 148 Lv~t~~--~~~~~~l~LiSGkTG 168 (848)
+|.+.. .+..+.+.|+-|..+
T Consensus 359 ~VGap~~~~~~~G~vyiy~g~~~ 381 (967)
T 3ije_A 359 AIAAPYGGEDKKGIVYIFNGRST 381 (967)
T ss_dssp EEEETTCSSSSCCEEEEEEEETT
T ss_pred EEeccccCCCCCceEEEEecCCC
Confidence 988752 222466777766543
No 34
>3t3p_A Integrin alpha-IIB; integrin, cell adhesion, blood clotting, fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB: 3fcu_A* 3nif_A* 3nid_A* 3t3m_A* 3nig_A* 2vdr_A* 2vc2_A* 2vdk_A* 2vdm_A* 2vdn_A* 2vdl_A* 2vdp_A* 2vdq_A* 2vdo_A* 1txv_A* 1ty3_A* 1ty5_A* 1ty6_A* 1ty7_A* 1tye_A*
Probab=72.78 E-value=4.6 Score=45.66 Aligned_cols=31 Identities=26% Similarity=0.428 Sum_probs=20.8
Q ss_pred ccCCCCCCccceEEEeec--CCceeEEEEEeCC
Q psy12259 136 VDDLTGDGVNDLVLISYM--GPSKYQLALLSGS 166 (848)
Q Consensus 136 vPDlDgDgV~DLLv~t~~--~~~~~~l~LiSGk 166 (848)
+-|+|+||.+||+|.+.. ....+.+.|+-|.
T Consensus 363 ~gD~ngDG~~Dl~vgap~~~~~~~G~vyv~~G~ 395 (457)
T 3t3p_A 363 LGDLDRDGYNDIAVAAPYGGPSGRGQVLVFLGQ 395 (457)
T ss_dssp EECSSCSSSCEEEEEETTCSTTSSCEEEEECEE
T ss_pred ccCCCCCCCcceeEeccccCCCCCceEEEEeCC
Confidence 679999999999987642 1123555555544
No 35
>3fcs_A Integrin, alpha 2B; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens}
Probab=72.41 E-value=3.5 Score=50.70 Aligned_cols=81 Identities=22% Similarity=0.335 Sum_probs=44.2
Q ss_pred CcccCCCCCccEEEEccCc--------------eEEEEeCCCcceeeeeccC---CCC-Cccccccee-ccCCCCCCccc
Q psy12259 86 LIDINLDGVLDCIVIADNG--------------YLAVLSQATGNLLWRKTNN---GYK-DGKMKFPLI-VDDLTGDGVND 146 (848)
Q Consensus 86 l~dl~~dg~~dCLl~Gr~g--------------~L~AIn~~TG~~lW~~~~~---~~~-~~~~~~P~l-vPDlDgDgV~D 146 (848)
..|+++||..|- ++|.++ -........|...|..+.. +.. .+.+-..+. +-|+||||.+|
T Consensus 295 ~gD~NgDG~~DL-vVGAP~~~~~~~~~~~~~~G~VyV~~~~~g~~~~~~~~~~l~G~~~~~~FG~sva~~gD~ngDG~~D 373 (959)
T 3fcs_A 295 VTDVNGDGRHDL-LVGAPLYMESRADRKLAEVGRVYLFLQPRGPHALGAPSLLLTGTQLYGRFGSAIAPLGDLDRDGYND 373 (959)
T ss_dssp EECCSSSSSCEE-EEEETTCEEEETTEEEEECBEEEEECCCSTTCCCCSCSEEEECCSTTCCBTSEEEEEECSSCSSSCE
T ss_pred EEEecCCCccce-eEeccccccccccccccCCceEEEEecCCCCCcccccceEEecccCCCCCceeEEeeecCCCCCCcc
Confidence 378999999894 676553 3223333233333332210 100 111223344 67999999999
Q ss_pred eEEEeecC--CceeEEEEEeCCC
Q psy12259 147 LVLISYMG--PSKYQLALLSGSN 167 (848)
Q Consensus 147 LLv~t~~~--~~~~~l~LiSGkT 167 (848)
|+|.+..+ ...+.+.++-|..
T Consensus 374 l~Vgap~~~~~~~G~Vyvy~g~~ 396 (959)
T 3fcs_A 374 IAVAAPYGGPSGRGQVLVFLGQS 396 (959)
T ss_dssp EEEEETTCSTTSSCEEEEECEET
T ss_pred eEEecccCCCCCCceEEEEecCC
Confidence 99877422 1236666666644
No 36
>3v4v_A Integrin alpha-4; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_A*
Probab=70.54 E-value=5.6 Score=46.38 Aligned_cols=82 Identities=17% Similarity=0.310 Sum_probs=47.4
Q ss_pred CcccCCCCCccEEEEccC--------ceEEEE-eCCCcceeeeeccC-CCC---Cccccccee-ccCCCCCCccceEEEe
Q psy12259 86 LIDINLDGVLDCIVIADN--------GYLAVL-SQATGNLLWRKTNN-GYK---DGKMKFPLI-VDDLTGDGVNDLVLIS 151 (848)
Q Consensus 86 l~dl~~dg~~dCLl~Gr~--------g~L~AI-n~~TG~~lW~~~~~-~~~---~~~~~~P~l-vPDlDgDgV~DLLv~t 151 (848)
..|+++||..|- |+|.+ |..... +.-+|...|+.... ... ...+-..+. +.|+||||.+||+|-+
T Consensus 279 ~~D~ngDG~~Dl-vVGap~~~~~~~~G~v~vy~~~g~g~~~~~~~~~l~g~~~~~~~FG~sva~~gDlngDG~~Dl~VGa 357 (597)
T 3v4v_A 279 AVDLNADGFSDL-LVGAPMQSTIREEGRVFVYINSGSGAVMNAMETNLVGSDKYAARFGESIVNLGDIDNDGFEDVAIGA 357 (597)
T ss_dssp EECTTCSSSCEE-EEEETTCCSSSCCCEEEEEEECSSSSCEECCSSCBCTTCCTTCCTTSCEECCCCSSCSSSCCEEEEE
T ss_pred EEeeCCCCCceE-EEEcccccCCCcCCeEEEEEECCCCcceeccceEEeCCcccccccccccccccccCCCCCcceEEec
Confidence 368999999994 66643 333332 33345444653221 111 112223343 7899999999999987
Q ss_pred ecCC-ceeEEEEEeCCCC
Q psy12259 152 YMGP-SKYQLALLSGSNG 168 (848)
Q Consensus 152 ~~~~-~~~~l~LiSGkTG 168 (848)
..+. ..+.+.++-|..+
T Consensus 358 p~~~~~~G~vyv~~g~~~ 375 (597)
T 3v4v_A 358 PQEDDLQGAIYIYNGRAD 375 (597)
T ss_dssp TTHHHHTBEEEEECEETT
T ss_pred ccccCCCCcEEEecCCCC
Confidence 6432 1366777766543
No 37
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=68.82 E-value=28 Score=34.49 Aligned_cols=90 Identities=22% Similarity=0.350 Sum_probs=54.0
Q ss_pred ccEEEEeCCCCceeeEeecCCCcEEeeecCcccCCCCCccEEEEccC-ceEEEEeCCCcceeeeeccCCCCCccccccee
Q psy12259 57 GGLIALDSVRPVELWRKTLNNVPKEVDCGLIDINLDGVLDCIVIADN-GYLAVLSQATGNLLWRKTNNGYKDGKMKFPLI 135 (848)
Q Consensus 57 ~gvlAlsG~nGs~LW~~~l~~ev~~i~C~l~dl~~dg~~dCLl~Gr~-g~L~AIn~~TG~~lW~~~~~~~~~~~~~~P~l 135 (848)
++|.+++-. |..+|........ +.+-..+. + +-|.+|.. +-+.++|+. |+.+|+.+.... .+..|++
T Consensus 117 ~~l~~~d~~-g~~~~~~~~~~~~--~~~~~~~~--~---g~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~---~~~~~~~ 184 (330)
T 3hxj_A 117 GHLYAINTD-GTEKWRFKTKKAI--YATPIVSE--D---GTIYVGSNDNYLYAINPD-GTEKWRFKTNDA---ITSAASI 184 (330)
T ss_dssp SEEEEECTT-SCEEEEEECSSCC--CSCCEECT--T---SCEEEECTTSEEEEECTT-SCEEEEEECSSC---CCSCCEE
T ss_pred CEEEEEcCC-CCEEEEEcCCCce--eeeeEEcC--C---CEEEEEcCCCEEEEECCC-CCEeEEEecCCC---ceeeeEE
Confidence 578888877 8999988765442 12211221 2 23556554 778999998 999999874421 1333333
Q ss_pred ccCCCCCCccceEEEeecCCceeEEEEEeCCCCccc
Q psy12259 136 VDDLTGDGVNDLVLISYMGPSKYQLALLSGSNGVQI 171 (848)
Q Consensus 136 vPDlDgDgV~DLLv~t~~~~~~~~l~LiSGkTG~~I 171 (848)
|.||. |.+.+ ..+..+. .+|.++
T Consensus 185 ----d~~g~--l~v~t------~~l~~~d-~~g~~~ 207 (330)
T 3hxj_A 185 ----GKDGT--IYFGS------DKVYAIN-PDGTEK 207 (330)
T ss_dssp ----CTTCC--EEEES------SSEEEEC-TTSCEE
T ss_pred ----cCCCE--EEEEe------CEEEEEC-CCCcEE
Confidence 44443 55444 2366777 787664
No 38
>3v4v_A Integrin alpha-4; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_A*
Probab=68.01 E-value=11 Score=43.98 Aligned_cols=65 Identities=20% Similarity=0.164 Sum_probs=34.6
Q ss_pred CcccCCCCCccEEEEccC-----ceEEEEeCCCcceeeeeccC--CCCCcccc-cceeccCCCCCCccceEEEeec
Q psy12259 86 LIDINLDGVLDCIVIADN-----GYLAVLSQATGNLLWRKTNN--GYKDGKMK-FPLIVDDLTGDGVNDLVLISYM 153 (848)
Q Consensus 86 l~dl~~dg~~dCLl~Gr~-----g~L~AIn~~TG~~lW~~~~~--~~~~~~~~-~P~lvPDlDgDgV~DLLv~t~~ 153 (848)
..|.++||..| ||+|.+ |.........| -|+.... +...++.- ..+.+-|+||||..||+|-+..
T Consensus 224 ~gD~ngDG~~D-lvvGAP~~~~~G~V~v~~~~~~--~~~~~~~l~G~~~g~~fG~sva~~D~ngDG~~DlvVGap~ 296 (597)
T 3v4v_A 224 AGHFRSQHTTE-VVGGAPQHEQIGKAYIFSIDEK--ELNILHEMKGKKLGSYFGASVCAVDLNADGFSDLLVGAPM 296 (597)
T ss_dssp EECSSCTTSCE-EEEEETTGGGTCEEEEEEECSS--SEEEEEEEECSSTTCCTTSEEEEECTTCSSSCEEEEEETT
T ss_pred EEEECCCCCeE-EEEecccccCCceEEEEecCCC--ceeEEEEecccccCCCCcceEEEEeeCCCCCceEEEEccc
Confidence 35777788777 666644 44343333223 2433211 11112211 2233669999999999776543
No 39
>4a7k_A Aldos-2-ulose dehydratase; lyase, dehydratase/isomerase, lignin degradation, cortalcerone/microthecin forming, metalloenzyme; 2.00A {Phanerochaete chrysosporium} PDB: 4a7y_A* 4a7z_A*
Probab=63.06 E-value=14 Score=44.87 Aligned_cols=93 Identities=18% Similarity=0.218 Sum_probs=55.1
Q ss_pred cEEeeecCcccCCCCCccEEEEccCce--------EEEE---eCCCcceeeeeccCCCCCcccccceeccCCCCCC-ccc
Q psy12259 79 PKEVDCGLIDINLDGVLDCIVIADNGY--------LAVL---SQATGNLLWRKTNNGYKDGKMKFPLIVDDLTGDG-VND 146 (848)
Q Consensus 79 v~~i~C~l~dl~~dg~~dCLl~Gr~g~--------L~AI---n~~TG~~lW~~~~~~~~~~~~~~P~lvPDlDgDg-V~D 146 (848)
.+.+.|+ |+++||.+|-++.-|.+- |... |...| -|.-..-. . + ...-+.+-|||||| -.|
T Consensus 336 gHaL~~g--DldGDG~~DIVvG~R~~~~~D~~~~gL~~Y~~~D~g~G--sF~~~vID-~-g-~~~~v~aaDLDGDG~dlD 408 (900)
T 4a7k_A 336 IHQVVCA--DIDGDGEDEFLVAMMGADPPDFQRTGVWCYKLVDRTNM--KFSKTKVS-S-V-SAGRIATANFHSQGSEVD 408 (900)
T ss_dssp EEEEEEE--CTTSSSBCEEEEEEECCSSCCGGGEEEEEEEEEETTTT--EEEEEEEE-C-S-CCSEEEEECCSSSSSCCE
T ss_pred ceeEEEE--ecCCCCcccEEEEecCCCCccCCcceEEEEEEecCCCC--cEEEEEEc-C-C-CcceEEEeccCCCCCccc
Confidence 4566666 777788666555533322 2222 33233 34422111 0 1 12344599999999 999
Q ss_pred eEEEeecCC-------ceeEEEEEeCCCCcccCCccccC
Q psy12259 147 LVLISYMGP-------SKYQLALLSGSNGVQIGTPLVKE 178 (848)
Q Consensus 147 LLv~t~~~~-------~~~~l~LiSGkTG~~IG~~v~l~ 178 (848)
|+++....+ .++.+++-.|-.|..+|..+.+.
T Consensus 409 IV~asy~~~~~y~~~~~~~~v~~s~~~~~~~~~~~~m~~ 447 (900)
T 4a7k_A 409 IATISYSVPGYFESPNPSINVFLSTGILAERLDEEVMLR 447 (900)
T ss_dssp EEEECCBBTTTBCCSSCCEEEEEEESEEEEECSSSEEEE
T ss_pred EEEeeccccccccCCCCeEEEEeccchhhhcccceeEEE
Confidence 999854421 13778888888888888876555
No 40
>4a7k_A Aldos-2-ulose dehydratase; lyase, dehydratase/isomerase, lignin degradation, cortalcerone/microthecin forming, metalloenzyme; 2.00A {Phanerochaete chrysosporium} PDB: 4a7y_A* 4a7z_A*
Probab=58.65 E-value=10 Score=46.05 Aligned_cols=66 Identities=17% Similarity=0.305 Sum_probs=41.4
Q ss_pred CcccCCCCCccEEEEccCceEEE--EeCCCcceeeeeccCCCC-Ccc---c-ccce---e-ccCCCCCCccceEEEee
Q psy12259 86 LIDINLDGVLDCIVIADNGYLAV--LSQATGNLLWRKTNNGYK-DGK---M-KFPL---I-VDDLTGDGVNDLVLISY 152 (848)
Q Consensus 86 l~dl~~dg~~dCLl~Gr~g~L~A--In~~TG~~lW~~~~~~~~-~~~---~-~~P~---l-vPDlDgDgV~DLLv~t~ 152 (848)
..|+++||.+|-|+.+..+- .+ .+...|++.|--++.... ... + ..|- + +-|+||||..|||+...
T Consensus 99 aaDLDGDGdlDVVvas~fg~-t~dd~n~~gG~V~W~ENpGd~t~~Wk~h~Is~~pgvHrv~agDLDGDGrlDLIvAsl 175 (900)
T 4a7k_A 99 YADITKNGFNDVIITDQYGS-SMDDIWAYGGRVSWLENPGELRDNWTMRTIGHSPGMHRLKAGHFTRTDRVQVVAVPI 175 (900)
T ss_dssp EECTTCSSBCEEEEEECCEE-ETTEECTTCCEEEEECCCSSSCSSCCEEEEEECTTEEEEEEECSSCSSSCEEEEEES
T ss_pred EEeeCCCCCccEEEecccCc-cccccccCCcEEEEEecCCCCCCCceEEEecCCCceEEEEEEEECCCCCEEEEEEec
Confidence 47999999999877765443 11 245578888865432110 000 1 1221 2 66999999999998763
No 41
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=58.02 E-value=57 Score=32.37 Aligned_cols=109 Identities=18% Similarity=0.044 Sum_probs=63.6
Q ss_pred ccEEEEeCCCCceeeEeecCCCcEEeeecCcccCCCCCccEEEEccCceEEEEeCCCcceeeeeccCCCCCccccccee-
Q psy12259 57 GGLIALDSVRPVELWRKTLNNVPKEVDCGLIDINLDGVLDCIVIADNGYLAVLSQATGNLLWRKTNNGYKDGKMKFPLI- 135 (848)
Q Consensus 57 ~gvlAlsG~nGs~LW~~~l~~ev~~i~C~l~dl~~dg~~dCLl~Gr~g~L~AIn~~TG~~lW~~~~~~~~~~~~~~P~l- 135 (848)
+.|..++..+|++++..+....+..+. ...++..--+..+..+.+..+|..||+.++.++...........|.-
T Consensus 69 ~~v~~~d~~~~~~~~~~~~~~~~~~~~-----~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (353)
T 3vgz_A 69 GVVYRLDPVTLEVTQAIHNDLKPFGAT-----INNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQP 143 (353)
T ss_dssp EEEEEECTTTCCEEEEEEESSCCCSEE-----EETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEE
T ss_pred ccEEEEcCCCCeEEEEEecCCCcceEE-----ECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCC
Confidence 468888889999999888765544332 22234333333355678899999999999998764322111111110
Q ss_pred -ccCCCCCCccceEEEeecCCceeEEEEEeCCCCcccCC
Q psy12259 136 -VDDLTGDGVNDLVLISYMGPSKYQLALLSGSNGVQIGT 173 (848)
Q Consensus 136 -vPDlDgDgV~DLLv~t~~~~~~~~l~LiSGkTG~~IG~ 173 (848)
--.++.|| +.++++.... ...+.++...||..+..
T Consensus 144 ~~~~~s~dg--~~l~~~~~~~-~~~i~~~d~~~~~~~~~ 179 (353)
T 3vgz_A 144 RELVADDAT--NTVYISGIGK-ESVIWVVDGGNIKLKTA 179 (353)
T ss_dssp EEEEEETTT--TEEEEEEESS-SCEEEEEETTTTEEEEE
T ss_pred ceEEECCCC--CEEEEEecCC-CceEEEEcCCCCceEEE
Confidence 01122233 2344444221 26789999999987644
No 42
>2bwr_A Psathyrella velutina lectin; N-acetyl-glucosamine; HET: MES; 1.5A {Psathyrella velutina} PDB: 2bwm_A* 2c25_A* 2c4d_A*
Probab=57.51 E-value=9 Score=41.48 Aligned_cols=64 Identities=22% Similarity=0.275 Sum_probs=38.4
Q ss_pred cCcccCCCCCccEEEEccCceEEEEeCCCcceeeeeccC---CCC--Cc--ccccceeccCCCCCCccceEEE
Q psy12259 85 GLIDINLDGVLDCIVIADNGYLAVLSQATGNLLWRKTNN---GYK--DG--KMKFPLIVDDLTGDGVNDLVLI 150 (848)
Q Consensus 85 ~l~dl~~dg~~dCLl~Gr~g~L~AIn~~TG~~lW~~~~~---~~~--~~--~~~~P~lvPDlDgDgV~DLLv~ 150 (848)
...|+++||.+|-++.+..++..-.+.-+|. |..+.. ... .+ ....++.+-|+||||.+||++.
T Consensus 230 ~~~D~dgDG~~Dlv~~~~~~~~~~~n~g~g~--f~~~~~~~~~~~~~~gw~~~~~~~~~~D~dgDG~~Dlv~~ 300 (401)
T 2bwr_A 230 VVADLTGDRKADILGFGVAGVYTSLNNGNGT--FGAVNLVLKDFGVNSGWRVEKHVRCVSSLTNKKVGDIIGF 300 (401)
T ss_dssp EEECSSSSSCCEEEEECSSSEEEECBCSSSC--BCCCEEEESCSSGGGTCCTTTCEEEEECCSTTCSCEEEEE
T ss_pred eeeEcCCCCCccEEEECCCcEEEEEeCCCcc--ccCceecccCcccCCcccccCccceeEeCCCCCCccEEEE
Confidence 4468999999999987766543333433332 221110 000 00 0124556999999999999985
No 43
>2bwr_A Psathyrella velutina lectin; N-acetyl-glucosamine; HET: MES; 1.5A {Psathyrella velutina} PDB: 2bwm_A* 2c25_A* 2c4d_A*
Probab=56.33 E-value=10 Score=41.12 Aligned_cols=66 Identities=24% Similarity=0.236 Sum_probs=37.8
Q ss_pred cCcccCCCCCccEEEEccCceEEEEeCCCcc----eeeeeccCCC-CCcc-cccceeccCCCCCCccceEEE
Q psy12259 85 GLIDINLDGVLDCIVIADNGYLAVLSQATGN----LLWRKTNNGY-KDGK-MKFPLIVDDLTGDGVNDLVLI 150 (848)
Q Consensus 85 ~l~dl~~dg~~dCLl~Gr~g~L~AIn~~TG~----~lW~~~~~~~-~~~~-~~~P~lvPDlDgDgV~DLLv~ 150 (848)
...|+++||.+|-++.+...+..-.+.-+|. ..|....... .... ...|+.+-|+||||.+||++.
T Consensus 174 ~~~D~dgDG~~Dl~~~~~~~~~~~~n~g~g~f~~~~~~~~~~~~~~~g~~~~~~~~~~~D~dgDG~~Dlv~~ 245 (401)
T 2bwr_A 174 FLADVTGDGLLDVVGFGENQVYIARNSGNGTFQPAQAVVNNFCIGAGGWTISAHPRVVADLTGDRKADILGF 245 (401)
T ss_dssp EEECSSSSSCCEEEEECSSCEEEECBCSSSCBCCCEEEESCSBTTBSCCCTTTCCEEEECSSSSSCCEEEEE
T ss_pred EEEEcCCCCCccEEEECCCcEEEEEeCCCCceecceeeccccccCcCCcccCCcceeeeEcCCCCCccEEEE
Confidence 4568999999999988765443333332332 1111000000 0000 135566899999999999974
No 44
>3t3p_A Integrin alpha-IIB; integrin, cell adhesion, blood clotting, fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB: 3fcu_A* 3nif_A* 3nid_A* 3t3m_A* 3nig_A* 2vdr_A* 2vc2_A* 2vdk_A* 2vdm_A* 2vdn_A* 2vdl_A* 2vdp_A* 2vdq_A* 2vdo_A* 1txv_A* 1ty3_A* 1ty5_A* 1ty6_A* 1ty7_A* 1tye_A*
Probab=55.69 E-value=18 Score=40.81 Aligned_cols=75 Identities=25% Similarity=0.301 Sum_probs=39.8
Q ss_pred CcccCCCCCccEEEEcc------CceEEEEeCCCcceeeeecc-----CCCCCccccccee-ccCCCCCCccceEEEeec
Q psy12259 86 LIDINLDGVLDCIVIAD------NGYLAVLSQATGNLLWRKTN-----NGYKDGKMKFPLI-VDDLTGDGVNDLVLISYM 153 (848)
Q Consensus 86 l~dl~~dg~~dCLl~Gr------~g~L~AIn~~TG~~lW~~~~-----~~~~~~~~~~P~l-vPDlDgDgV~DLLv~t~~ 153 (848)
+-|+++||.+|.+|... .|......+.. .-+...+. .......+-..+. +-|+|+||.+||+|-+.+
T Consensus 363 ~gD~ngDG~~Dl~vgap~~~~~~~G~vyv~~G~~-~G~~~~~~q~l~~~~~~~~~fG~sv~~~gDlngDG~~Dl~VGa~g 441 (457)
T 3t3p_A 363 LGDLDRDGYNDIAVAAPYGGPSGRGQVLVFLGQS-EGLRSRPSQVLDSPFPTGSAFGFSLRGAVDIDDNGYPDLIVGAYG 441 (457)
T ss_dssp EECSSCSSSCEEEEEETTCSTTSSCEEEEECEET-TEECSSCSEEEECSSCTTCCTTSEEEEEECSSSSSSCEEEEEEGG
T ss_pred ccCCCCCCCcceeEeccccCCCCCceEEEEeCCC-CCcccCcceEEeCCccccccCcceeeeeeccCCCCCccEEEecCC
Confidence 35899999999765432 24333333321 11111010 0000111223344 789999999999998765
Q ss_pred CCceeEEEEEe
Q psy12259 154 GPSKYQLALLS 164 (848)
Q Consensus 154 ~~~~~~l~LiS 164 (848)
. ..++++-
T Consensus 442 ~---~~v~l~r 449 (457)
T 3t3p_A 442 A---NQVAVYR 449 (457)
T ss_dssp G---TEEEEEC
T ss_pred C---CeEEEeC
Confidence 4 3455553
No 45
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*
Probab=54.00 E-value=47 Score=41.36 Aligned_cols=72 Identities=22% Similarity=0.316 Sum_probs=39.0
Q ss_pred ccEEEEccCc-----eEEEEeCCCcceeeeeccC--CCCCccccccee-ccCCCCCCccceEEEee-cC---CceeEEEE
Q psy12259 95 LDCIVIADNG-----YLAVLSQATGNLLWRKTNN--GYKDGKMKFPLI-VDDLTGDGVNDLVLISY-MG---PSKYQLAL 162 (848)
Q Consensus 95 ~dCLl~Gr~g-----~L~AIn~~TG~~lW~~~~~--~~~~~~~~~P~l-vPDlDgDgV~DLLv~t~-~~---~~~~~l~L 162 (848)
.+-+|+|-++ ....+....|. |+.... +...++..-+.+ +=|+||||..||+++.. .. .+.+.+.+
T Consensus 398 ~~~~v~GAP~~~~~G~V~i~~~~~~~--~~~~~~~~g~~~gs~fG~sva~~DvngDG~~DllvvGAP~~~~~~~~G~Vyv 475 (1095)
T 3k6s_A 398 VQSLVLGAPRYQHTGKAVIFTQVSRQ--WRMKAEVTGTQIGSYFGASLCSVDVDSDGSTDLVLIGAPHYYEQTRGGQVSV 475 (1095)
T ss_dssp SCEEEEEETTGGGTCEEEEEECCTTT--CCEEEEECCSSTTSCTTSCEEEECSSSSSSCCEEEEECSSCCSSCCCBCEEE
T ss_pred ceEEEEEcccccccceEEEEEecCCc--ceEEeecccCcccCcCCceEEEEEeCCCCCccEEEECCccccCcCCCCEEEE
Confidence 3567888553 33444443333 554221 222333334445 88999999999965532 21 12366677
Q ss_pred EeCCCC
Q psy12259 163 LSGSNG 168 (848)
Q Consensus 163 iSGkTG 168 (848)
+-|..|
T Consensus 476 y~~~~~ 481 (1095)
T 3k6s_A 476 CPLPRG 481 (1095)
T ss_dssp EECCSS
T ss_pred EEeCCC
Confidence 655433
No 46
>3fcs_A Integrin, alpha 2B; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens}
Probab=50.64 E-value=24 Score=43.43 Aligned_cols=77 Identities=25% Similarity=0.291 Sum_probs=41.5
Q ss_pred CcccCCCCCccEEEEcc------CceEEEEeCCCcceeeeecc-----CCCCCccccccee-ccCCCCCCccceEEEeec
Q psy12259 86 LIDINLDGVLDCIVIAD------NGYLAVLSQATGNLLWRKTN-----NGYKDGKMKFPLI-VDDLTGDGVNDLVLISYM 153 (848)
Q Consensus 86 l~dl~~dg~~dCLl~Gr------~g~L~AIn~~TG~~lW~~~~-----~~~~~~~~~~P~l-vPDlDgDgV~DLLv~t~~ 153 (848)
+.|+++||.+|-+|... .|......+. |.-+...+. .......+-..+. +-|+||||.+||+|-+.+
T Consensus 363 ~gD~ngDG~~Dl~Vgap~~~~~~~G~Vyvy~g~-~~g~~~~~~q~~~~~~~~~~~fG~sv~~~gDlngDG~~Dl~VGa~g 441 (959)
T 3fcs_A 363 LGDLDRDGYNDIAVAAPYGGPSGRGQVLVFLGQ-SEGLRSRPSQVLDSPFPTGSAFGFSLRGAVDIDDNGYPDLIVGAYG 441 (959)
T ss_dssp EECSSCSSSCEEEEEETTCSTTSSCEEEEECEE-TTEECSSCSEEEECCSCTTCCTTSSEEEEECSSSSSSCEEEEEEGG
T ss_pred eecCCCCCCcceEEecccCCCCCCceEEEEecC-CCCcccccceeeccCcCCcccccceeeeeeccCCCCCCCEEEecCC
Confidence 35899999999765421 2433333332 111111110 0000111223344 789999999999998775
Q ss_pred CCceeEEEEEeCC
Q psy12259 154 GPSKYQLALLSGS 166 (848)
Q Consensus 154 ~~~~~~l~LiSGk 166 (848)
. +..+++-++
T Consensus 442 ~---g~v~~~rsr 451 (959)
T 3fcs_A 442 A---NQVAVYRAQ 451 (959)
T ss_dssp G---TEEEEECBC
T ss_pred C---CeEEEEecC
Confidence 4 445666554
No 47
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=37.94 E-value=1.7e+02 Score=28.82 Aligned_cols=60 Identities=10% Similarity=0.086 Sum_probs=36.4
Q ss_pred ccCceEEEEeCCCcceeeeeccCCCCCcccccceeccCCCCCCccceEEEeecCCceeEEEEEeCCCCcccCC
Q psy12259 101 ADNGYLAVLSQATGNLLWRKTNNGYKDGKMKFPLIVDDLTGDGVNDLVLISYMGPSKYQLALLSGSNGVQIGT 173 (848)
Q Consensus 101 Gr~g~L~AIn~~TG~~lW~~~~~~~~~~~~~~P~lvPDlDgDgV~DLLv~t~~~~~~~~l~LiSGkTG~~IG~ 173 (848)
...+.+..+|..+|+.++..+.... ....+-| || ..+.++.... ..+.++.-.||+.+..
T Consensus 250 ~~~~~v~~~d~~~~~~~~~~~~~~~-----~~~~~s~----dg--~~l~v~~~~~--~~v~~~d~~~~~~~~~ 309 (353)
T 3vgz_A 250 SKAAEVLVVDTRNGNILAKVAAPES-----LAVLFNP----AR--NEAYVTHRQA--GKVSVIDAKSYKVVKT 309 (353)
T ss_dssp SSSSEEEEEETTTCCEEEEEECSSC-----CCEEEET----TT--TEEEEEETTT--TEEEEEETTTTEEEEE
T ss_pred CCCCEEEEEECCCCcEEEEEEcCCC-----ceEEECC----CC--CEEEEEECCC--CeEEEEECCCCeEEEE
Confidence 3447788899999999988764321 1111223 33 3344444331 5788899999987654
No 48
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=32.48 E-value=2.2e+02 Score=28.49 Aligned_cols=105 Identities=7% Similarity=-0.039 Sum_probs=57.5
Q ss_pred ccEEEEeCCCCce-eeEeecCCCcEEeeec---------CcccCCCCCccEEEEccCceEEEEeCCCcceeeeeccCCCC
Q psy12259 57 GGLIALDSVRPVE-LWRKTLNNVPKEVDCG---------LIDINLDGVLDCIVIADNGYLAVLSQATGNLLWRKTNNGYK 126 (848)
Q Consensus 57 ~gvlAlsG~nGs~-LW~~~l~~ev~~i~C~---------l~dl~~dg~~dCLl~Gr~g~L~AIn~~TG~~lW~~~~~~~~ 126 (848)
+..++..|.+|.+ +|............-. ......+.....++++..|.+...|..+|+.+..+..+...
T Consensus 257 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~ 336 (408)
T 4a11_B 257 GLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKT 336 (408)
T ss_dssp SSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSC
T ss_pred CCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCe
Confidence 3567777888876 8876544332111100 00111122345667788888999999999999988654322
Q ss_pred CcccccceeccCCCCCCccceEEEeecCCceeEEEEEeCCCCcccCC
Q psy12259 127 DGKMKFPLIVDDLTGDGVNDLVLISYMGPSKYQLALLSGSNGVQIGT 173 (848)
Q Consensus 127 ~~~~~~P~lvPDlDgDgV~DLLv~t~~~~~~~~l~LiSGkTG~~IG~ 173 (848)
+..-.+-|| | .+|+....+ +.+.+..=.+++++..
T Consensus 337 ---v~~~~~s~~----~--~~l~s~~~d---g~i~iw~~~~~~~~~~ 371 (408)
T 4a11_B 337 ---VDCCVFQSN----F--QELYSGSRD---CNILAWVPSLYEPVPD 371 (408)
T ss_dssp ---EEEEEEETT----T--TEEEEEETT---SCEEEEEECC------
T ss_pred ---EEEEEEcCC----C--CEEEEECCC---CeEEEEeCCCCCccCC
Confidence 333233453 2 455544433 5688888888877654
No 49
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=31.78 E-value=1.6e+02 Score=30.87 Aligned_cols=63 Identities=13% Similarity=0.084 Sum_probs=34.3
Q ss_pred ccCceEEEEeCCCcceeeeeccCCCCCcccccceeccCCCCCCccceEEEeecCCceeEEEEEeCCCCcccCCc
Q psy12259 101 ADNGYLAVLSQATGNLLWRKTNNGYKDGKMKFPLIVDDLTGDGVNDLVLISYMGPSKYQLALLSGSNGVQIGTP 174 (848)
Q Consensus 101 Gr~g~L~AIn~~TG~~lW~~~~~~~~~~~~~~P~lvPDlDgDgV~DLLv~t~~~~~~~~l~LiSGkTG~~IG~~ 174 (848)
+..|.+...|..+|+.+.++..+.... .++.--..| +++|++...+ +.+.+..=++|+.+..-
T Consensus 336 ~~dg~i~vwd~~~~~~~~~~~~~~~~~----~~v~~~~~~----~~~l~s~~~d---g~v~iwd~~~~~~~~~~ 398 (445)
T 2ovr_B 336 NADSTVKIWDIKTGQCLQTLQGPNKHQ----SAVTCLQFN----KNFVITSSDD---GTVKLWDLKTGEFIRNL 398 (445)
T ss_dssp ETTSCEEEEETTTCCEEEEECSTTSCS----SCEEEEEEC----SSEEEEEETT---SEEEEEETTTCCEEEEE
T ss_pred eCCCeEEEEECCCCcEEEEEccCCCCC----CCEEEEEEC----CCEEEEEeCC---CeEEEEECCCCceeeee
Confidence 456667777777777777765421111 122100112 2455544443 67888888888776543
No 50
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=31.50 E-value=4.3e+02 Score=26.82 Aligned_cols=65 Identities=14% Similarity=0.156 Sum_probs=39.4
Q ss_pred ccEEEEeCCCCce-eeEeecCCCcEEeeecCc-----ccCCCCCccEEE-EccCceEEEEeCCCcceeeeeccC
Q psy12259 57 GGLIALDSVRPVE-LWRKTLNNVPKEVDCGLI-----DINLDGVLDCIV-IADNGYLAVLSQATGNLLWRKTNN 123 (848)
Q Consensus 57 ~gvlAlsG~nGs~-LW~~~l~~ev~~i~C~l~-----dl~~dg~~dCLl-~Gr~g~L~AIn~~TG~~lW~~~~~ 123 (848)
+..+|..+.+|.+ +|.......+..+..... ....++ ..|+ .+..|.+...|..+|+.+..+..+
T Consensus 151 ~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~--~~l~s~~~d~~v~iwd~~~~~~~~~~~~~ 222 (420)
T 3vl1_A 151 GEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRG--RNVLSASLDGTIRLWECGTGTTIHTFNRK 222 (420)
T ss_dssp SSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTT--TEEEEEETTSCEEEEETTTTEEEEEECBT
T ss_pred CCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCC--CEEEEEcCCCcEEEeECCCCceeEEeecC
Confidence 3577888888877 887665544444332111 111122 2344 466777888899999999887654
No 51
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=30.80 E-value=3.9e+02 Score=26.80 Aligned_cols=108 Identities=16% Similarity=0.146 Sum_probs=59.3
Q ss_pred cE-EEEeCCCCce-eeEeec------CCCcE-----Eeee------------cCcccCCCCCccEEEEccCceEEEEeCC
Q psy12259 58 GL-IALDSVRPVE-LWRKTL------NNVPK-----EVDC------------GLIDINLDGVLDCIVIADNGYLAVLSQA 112 (848)
Q Consensus 58 gv-lAlsG~nGs~-LW~~~l------~~ev~-----~i~C------------~l~dl~~dg~~dCLl~Gr~g~L~AIn~~ 112 (848)
.. ++..+.+|.+ +|.... ...+. .+.. .-.....++ -.++.+..|.+...|..
T Consensus 138 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~i~i~d~~ 215 (397)
T 1sq9_A 138 SHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELS 215 (397)
T ss_dssp CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETT
T ss_pred ceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc--eEEEEeCCCcEEEEECC
Confidence 55 7777788877 898776 44433 3321 011122223 23333566888888988
Q ss_pred Ccceeeeecc---CCCCCcccccceeccCCCCCCccceEEEeecCCceeEEEEEeCCCCcccCC
Q psy12259 113 TGNLLWRKTN---NGYKDGKMKFPLIVDDLTGDGVNDLVLISYMGPSKYQLALLSGSNGVQIGT 173 (848)
Q Consensus 113 TG~~lW~~~~---~~~~~~~~~~P~lvPDlDgDgV~DLLv~t~~~~~~~~l~LiSGkTG~~IG~ 173 (848)
+|+.++.+.. +......+..-.+-|| ..+|++...+...+.+.++.-++|+.+..
T Consensus 216 ~~~~~~~~~~~~~h~~~~~~i~~i~~~~~------~~~l~~~~~d~~~g~i~i~d~~~~~~~~~ 273 (397)
T 1sq9_A 216 TLRPLYNFESQHSMINNSNSIRSVKFSPQ------GSLLAIAHDSNSFGCITLYETEFGERIGS 273 (397)
T ss_dssp TTEEEEEEECCC---CCCCCEEEEEECSS------TTEEEEEEEETTEEEEEEEETTTCCEEEE
T ss_pred CCceeEEEeccccccccCCccceEEECCC------CCEEEEEecCCCCceEEEEECCCCcccce
Confidence 8999888765 3000112333333454 24555444321126788888888876543
No 52
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=27.72 E-value=4.1e+02 Score=27.20 Aligned_cols=106 Identities=11% Similarity=0.067 Sum_probs=57.7
Q ss_pred cccEEEEeCCCCce-eeEeecC-------CCcEEeeecC-----cccCCCCCccEEEEccCceEEEEeCCCcceeeeec-
Q psy12259 56 GGGLIALDSVRPVE-LWRKTLN-------NVPKEVDCGL-----IDINLDGVLDCIVIADNGYLAVLSQATGNLLWRKT- 121 (848)
Q Consensus 56 ~~gvlAlsG~nGs~-LW~~~l~-------~ev~~i~C~l-----~dl~~dg~~dCLl~Gr~g~L~AIn~~TG~~lW~~~- 121 (848)
.+.++|..+.+|.+ +|..... .....+.... .....++..-.+..+..|.+...|..+|+.+..+.
T Consensus 93 ~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 172 (402)
T 2aq5_A 93 NDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGP 172 (402)
T ss_dssp CTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECT
T ss_pred CCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEec
Confidence 35688888889977 8987654 2223322111 11111221223334667777888888888887773
Q ss_pred -cCCCCCcccccceeccCCCCCCccceEEEeecCCceeEEEEEeCCCCcccCC
Q psy12259 122 -NNGYKDGKMKFPLIVDDLTGDGVNDLVLISYMGPSKYQLALLSGSNGVQIGT 173 (848)
Q Consensus 122 -~~~~~~~~~~~P~lvPDlDgDgV~DLLv~t~~~~~~~~l~LiSGkTG~~IG~ 173 (848)
.+.. .+..-.+-| || .+|++...+ +.+.+..=++|..+..
T Consensus 173 ~~~~~---~v~~~~~~~----~~--~~l~~~~~d---~~i~iwd~~~~~~~~~ 213 (402)
T 2aq5_A 173 DVHPD---TIYSVDWSR----DG--ALICTSCRD---KRVRVIEPRKGTVVAE 213 (402)
T ss_dssp TTCCS---CEEEEEECT----TS--SCEEEEETT---SEEEEEETTTTEEEEE
T ss_pred CCCCC---ceEEEEECC----CC--CEEEEEecC---CcEEEEeCCCCceeee
Confidence 2221 122222344 22 355544433 5688888888876543
No 53
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=25.91 E-value=3.1e+02 Score=27.47 Aligned_cols=63 Identities=21% Similarity=0.153 Sum_probs=33.6
Q ss_pred EEEE-ccCceEEEEeCCCcceeeeeccCCCCCcccccceeccCCCCCCccceEEEeecCCceeEEEEEeCCCCcccC
Q psy12259 97 CIVI-ADNGYLAVLSQATGNLLWRKTNNGYKDGKMKFPLIVDDLTGDGVNDLVLISYMGPSKYQLALLSGSNGVQIG 172 (848)
Q Consensus 97 CLl~-Gr~g~L~AIn~~TG~~lW~~~~~~~~~~~~~~P~lvPDlDgDgV~DLLv~t~~~~~~~~l~LiSGkTG~~IG 172 (848)
.|++ +..|.+...| .+|+.+..+..+... +....+-|| | ..|++...+ +.+.+..-.+|..+.
T Consensus 122 ~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~---v~~~~~~~~----~--~~l~~~~~d---~~i~iwd~~~~~~~~ 185 (425)
T 1r5m_A 122 SIVTGVENGELRLWN-KTGALLNVLNFHRAP---IVSVKWNKD----G--THIISMDVE---NVTILWNVISGTVMQ 185 (425)
T ss_dssp EEEEEETTSCEEEEE-TTSCEEEEECCCCSC---EEEEEECTT----S--SEEEEEETT---CCEEEEETTTTEEEE
T ss_pred EEEEEeCCCeEEEEe-CCCCeeeeccCCCcc---EEEEEECCC----C--CEEEEEecC---CeEEEEECCCCcEEE
Confidence 3444 4556666677 577777776544221 333333443 2 244443333 557777777776643
No 54
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=24.00 E-value=2.4e+02 Score=27.75 Aligned_cols=106 Identities=11% Similarity=-0.062 Sum_probs=0.0
Q ss_pred ccEEEEeCCCCce-eeEeecCCCcEEeeecCcccCC---CC-CccEEEEcc-CceEEEEeCCCcceeeeeccCCCCCccc
Q psy12259 57 GGLIALDSVRPVE-LWRKTLNNVPKEVDCGLIDINL---DG-VLDCIVIAD-NGYLAVLSQATGNLLWRKTNNGYKDGKM 130 (848)
Q Consensus 57 ~gvlAlsG~nGs~-LW~~~l~~ev~~i~C~l~dl~~---dg-~~dCLl~Gr-~g~L~AIn~~TG~~lW~~~~~~~~~~~~ 130 (848)
+.++|..|.+|.+ +|.....+.+..+......+.. .. ....|++|. .|.+...|..+|+.+..+.........+
T Consensus 85 ~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v 164 (366)
T 3k26_A 85 HPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEV 164 (366)
T ss_dssp CEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCE
T ss_pred CCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCce
Q ss_pred ccceeccCCCCCCccceEEEeecCCceeEEEEEeCCCCccc
Q psy12259 131 KFPLIVDDLTGDGVNDLVLISYMGPSKYQLALLSGSNGVQI 171 (848)
Q Consensus 131 ~~P~lvPDlDgDgV~DLLv~t~~~~~~~~l~LiSGkTG~~I 171 (848)
..-.+-|| ...|+....+ +.+.+..-++|..+
T Consensus 165 ~~~~~~~~------~~~l~~~~~d---g~i~i~d~~~~~~~ 196 (366)
T 3k26_A 165 LSADYDLL------GEKIMSCGMD---HSLKLWRINSKRMM 196 (366)
T ss_dssp EEEEECTT------SSEEEEEETT---SCEEEEESCSHHHH
T ss_pred eEEEECCC------CCEEEEecCC---CCEEEEECCCCccc
No 55
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=22.24 E-value=5e+02 Score=25.31 Aligned_cols=103 Identities=13% Similarity=0.077 Sum_probs=54.8
Q ss_pred ccEEEEeCCCCce-eeEeecCCCcEEeeecCc-----ccCCCCCccEEEEccCceEEEEeCCCcceeeeeccCCCCCccc
Q psy12259 57 GGLIALDSVRPVE-LWRKTLNNVPKEVDCGLI-----DINLDGVLDCIVIADNGYLAVLSQATGNLLWRKTNNGYKDGKM 130 (848)
Q Consensus 57 ~gvlAlsG~nGs~-LW~~~l~~ev~~i~C~l~-----dl~~dg~~dCLl~Gr~g~L~AIn~~TG~~lW~~~~~~~~~~~~ 130 (848)
+..+|..|.+|.+ +|.......+..+..... ....++ .-.+..+..|.+...|..+|+.+..++.+... +
T Consensus 77 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~---v 152 (312)
T 4ery_A 77 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP---V 152 (312)
T ss_dssp SSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTCCEEEEECCCSSC---E
T ss_pred CCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCEEEEEecCCCCc---E
Confidence 4678888888887 887654443333322110 111111 12233356777788888888887776544321 2
Q ss_pred ccceeccCCCCCCccceEEEeecCCceeEEEEEeCCCCcccC
Q psy12259 131 KFPLIVDDLTGDGVNDLVLISYMGPSKYQLALLSGSNGVQIG 172 (848)
Q Consensus 131 ~~P~lvPDlDgDgV~DLLv~t~~~~~~~~l~LiSGkTG~~IG 172 (848)
..-.+-| || .++++...+ +.+.+..-++|+.+.
T Consensus 153 ~~~~~~~----~~--~~l~~~~~d---~~i~~wd~~~~~~~~ 185 (312)
T 4ery_A 153 SAVHFNR----DG--SLIVSSSYD---GLCRIWDTASGQCLK 185 (312)
T ss_dssp EEEEECT----TS--SEEEEEETT---SCEEEEETTTCCEEE
T ss_pred EEEEEcC----CC--CEEEEEeCC---CcEEEEECCCCceee
Confidence 1111233 22 355544433 567778888876643
No 56
>3od9_A Putative exported protein; beta sandwich, C-terminal helix, hydrolase inhibitor; 1.41A {Aeromonas hydrophila}
Probab=21.78 E-value=50 Score=31.68 Aligned_cols=20 Identities=35% Similarity=0.469 Sum_probs=17.1
Q ss_pred eEEEecCCCCCcceEEEEee
Q psy12259 394 LLLADLDKDGSQDLISYLVT 413 (848)
Q Consensus 394 ~~~~~ld~d~~~elisy~s~ 413 (848)
..++|||+||.||||-+..|
T Consensus 64 a~laDlngd~~~eLiVt~~s 83 (135)
T 3od9_A 64 LKLLDLNGDKQPELIVVVES 83 (135)
T ss_dssp EEEECSSSSSSCEEEEEEEC
T ss_pred EEEEecCCCCCeeEEEEEEe
Confidence 67999999999999966544
No 57
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=21.70 E-value=5e+02 Score=26.49 Aligned_cols=64 Identities=17% Similarity=0.030 Sum_probs=37.2
Q ss_pred EEEE-ccCceEEEEeCCCcceeeeeccCCCCCcccccceeccCCCCCCccceEEEeecCCceeEEEEEeCCCCccc
Q psy12259 97 CIVI-ADNGYLAVLSQATGNLLWRKTNNGYKDGKMKFPLIVDDLTGDGVNDLVLISYMGPSKYQLALLSGSNGVQI 171 (848)
Q Consensus 97 CLl~-Gr~g~L~AIn~~TG~~lW~~~~~~~~~~~~~~P~lvPDlDgDgV~DLLv~t~~~~~~~~l~LiSGkTG~~I 171 (848)
.+++ +..|.+..+|..+|+.++++..+... +....+-|| | ..++++...+ +.+.++.-++|..+
T Consensus 183 ~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~---~~~~~~~~~----~--~~l~~~~~~~--~~i~~~d~~~~~~~ 247 (433)
T 3bws_A 183 LWVSQMQANAVHVFDLKTLAYKATVDLTGKW---SKILLYDPI----R--DLVYCSNWIS--EDISVIDRKTKLEI 247 (433)
T ss_dssp EEEEEGGGTEEEEEETTTCCEEEEEECSSSS---EEEEEEETT----T--TEEEEEETTT--TEEEEEETTTTEEE
T ss_pred EEEEECCCCEEEEEECCCceEEEEEcCCCCC---eeEEEEcCC----C--CEEEEEecCC--CcEEEEECCCCcEE
Confidence 3444 45577888899899999887644321 222222332 2 3454444332 56778888888664
No 58
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=21.09 E-value=4.1e+02 Score=26.62 Aligned_cols=62 Identities=13% Similarity=0.136 Sum_probs=36.2
Q ss_pred EEEEeCCCCce-eeEeecCCCcEEeee---c------C--cccCCCCCccEEEE-ccC---ceEEEEeCCCcceeeeecc
Q psy12259 59 LIALDSVRPVE-LWRKTLNNVPKEVDC---G------L--IDINLDGVLDCIVI-ADN---GYLAVLSQATGNLLWRKTN 122 (848)
Q Consensus 59 vlAlsG~nGs~-LW~~~l~~ev~~i~C---~------l--~dl~~dg~~dCLl~-Gr~---g~L~AIn~~TG~~lW~~~~ 122 (848)
+++..+.+|.+ +|.......+..+.. . . .....++ ..|++ +.. |.+...|..+|+.+..+..
T Consensus 199 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~--~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~ 276 (397)
T 1sq9_A 199 LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQG--SLLAIAHDSNSFGCITLYETEFGERIGSLSV 276 (397)
T ss_dssp EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSST--TEEEEEEEETTEEEEEEEETTTCCEEEEECB
T ss_pred eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCC--CEEEEEecCCCCceEEEEECCCCcccceecc
Confidence 78888888877 787554333333332 1 0 0111122 34444 444 7888889889998888764
No 59
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=20.96 E-value=5.6e+02 Score=24.60 Aligned_cols=104 Identities=14% Similarity=0.182 Sum_probs=56.2
Q ss_pred ccEEEEeCCCCce-eeEeecCCC--cEEeeecC-----cccCCCCCccEEEEccCceEEEEeCCCcceeeeeccCCCCCc
Q psy12259 57 GGLIALDSVRPVE-LWRKTLNNV--PKEVDCGL-----IDINLDGVLDCIVIADNGYLAVLSQATGNLLWRKTNNGYKDG 128 (848)
Q Consensus 57 ~gvlAlsG~nGs~-LW~~~l~~e--v~~i~C~l-----~dl~~dg~~dCLl~Gr~g~L~AIn~~TG~~lW~~~~~~~~~~ 128 (848)
+..++..+.+|.+ +|....... ...+.... .....++ .-.++.+..|.+...|..+|+.+..+..+...
T Consensus 109 ~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~-- 185 (337)
T 1gxr_A 109 GCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDS-KVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDG-- 185 (337)
T ss_dssp SSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEECCCSSC--
T ss_pred CCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCceeeeeecccCc--
Confidence 3567777888876 786554331 11111110 1111122 22334456788888999899988887654321
Q ss_pred ccccceeccCCCCCCccceEEEeecCCceeEEEEEeCCCCcccCC
Q psy12259 129 KMKFPLIVDDLTGDGVNDLVLISYMGPSKYQLALLSGSNGVQIGT 173 (848)
Q Consensus 129 ~~~~P~lvPDlDgDgV~DLLv~t~~~~~~~~l~LiSGkTG~~IG~ 173 (848)
+..-.+-| || ..|++...+ +.+.+..-++|+++..
T Consensus 186 -i~~~~~~~----~~--~~l~~~~~d---g~i~~~d~~~~~~~~~ 220 (337)
T 1gxr_A 186 -ASCIDISN----DG--TKLWTGGLD---NTVRSWDLREGRQLQQ 220 (337)
T ss_dssp -EEEEEECT----TS--SEEEEEETT---SEEEEEETTTTEEEEE
T ss_pred -eEEEEECC----CC--CEEEEEecC---CcEEEEECCCCceEee
Confidence 22222344 32 455554433 6688888888876543
No 60
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=20.28 E-value=5.8e+02 Score=24.82 Aligned_cols=101 Identities=13% Similarity=0.172 Sum_probs=52.3
Q ss_pred ccEEEEeCCCCce-eeEeecCCCcEEeeecC-----cccCCCCCccEEE-EccCceEEEEeCCCcceeeeeccCCCCCcc
Q psy12259 57 GGLIALDSVRPVE-LWRKTLNNVPKEVDCGL-----IDINLDGVLDCIV-IADNGYLAVLSQATGNLLWRKTNNGYKDGK 129 (848)
Q Consensus 57 ~gvlAlsG~nGs~-LW~~~l~~ev~~i~C~l-----~dl~~dg~~dCLl-~Gr~g~L~AIn~~TG~~lW~~~~~~~~~~~ 129 (848)
+..+|..|.+|.+ +|..........+...- .....++ ..|+ .+..|.+...|..+|+.+-.+..+...
T Consensus 35 ~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~--- 109 (312)
T 4ery_A 35 GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS--NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY--- 109 (312)
T ss_dssp SSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS--SEEEEEETTSEEEEEETTTCCEEEEEECCSSC---
T ss_pred CCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCC--CEEEEECCCCEEEEEECCCCcEEEEEcCCCCC---
Confidence 3567777888877 88654332222221110 0111122 2344 356777888888888877766543221
Q ss_pred cccceeccCCCCCCccceEEEeecCCceeEEEEEeCCCCccc
Q psy12259 130 MKFPLIVDDLTGDGVNDLVLISYMGPSKYQLALLSGSNGVQI 171 (848)
Q Consensus 130 ~~~P~lvPDlDgDgV~DLLv~t~~~~~~~~l~LiSGkTG~~I 171 (848)
+..-.+-|| | .+|+....+ +.+.+..-++|+.+
T Consensus 110 v~~~~~~~~----~--~~l~s~~~d---~~i~iwd~~~~~~~ 142 (312)
T 4ery_A 110 VFCCNFNPQ----S--NLIVSGSFD---ESVRIWDVKTGKCL 142 (312)
T ss_dssp EEEEEECSS----S--SEEEEEETT---SCEEEEETTTCCEE
T ss_pred EEEEEEcCC----C--CEEEEEeCC---CcEEEEECCCCEEE
Confidence 222223443 2 345443333 45777777777654
No 61
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=20.27 E-value=7.1e+02 Score=25.49 Aligned_cols=101 Identities=11% Similarity=-0.017 Sum_probs=54.4
Q ss_pred ccEEEEeCCCCce-eeEeecCCCcEEeeecCcc-----cCCCCCccEEEEc---cCceEEEEeCCCcceeeeeccCCCCC
Q psy12259 57 GGLIALDSVRPVE-LWRKTLNNVPKEVDCGLID-----INLDGVLDCIVIA---DNGYLAVLSQATGNLLWRKTNNGYKD 127 (848)
Q Consensus 57 ~gvlAlsG~nGs~-LW~~~l~~ev~~i~C~l~d-----l~~dg~~dCLl~G---r~g~L~AIn~~TG~~lW~~~~~~~~~ 127 (848)
+..+|..|.+|.+ +|..........+...... ...++ ...+++| ..|.+...|..+|+.+..+.....
T Consensus 229 ~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~-~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~-- 305 (401)
T 4aez_A 229 GLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQ-SNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQ-- 305 (401)
T ss_dssp SSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTS-TTEEEEECCTTTCEEEEEETTTCCEEEEEECSSC--
T ss_pred CCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCC-CCEEEEecCCCCCEEEEEECCCCCEEEEEeCCCc--
Confidence 4678888888887 8876543333322211111 11112 3456664 488888999999999988753321
Q ss_pred cccccceeccCCCCCCccceEEEeecCCceeEEEEEeCCCCc
Q psy12259 128 GKMKFPLIVDDLTGDGVNDLVLISYMGPSKYQLALLSGSNGV 169 (848)
Q Consensus 128 ~~~~~P~lvPDlDgDgV~DLLv~t~~~~~~~~l~LiSGkTG~ 169 (848)
+..-.+-|| ...++++.+... +.+.+..-.+|.
T Consensus 306 --v~~~~~s~~------~~~l~~~~g~~d-g~i~v~~~~~~~ 338 (401)
T 4aez_A 306 --VTSLIWSPH------SKEIMSTHGFPD-NNLSIWSYSSSG 338 (401)
T ss_dssp --EEEEEECSS------SSEEEEEECTTT-CEEEEEEEETTE
T ss_pred --EEEEEECCC------CCeEEEEeecCC-CcEEEEecCCcc
Confidence 222223443 234555443222 556666555553
Done!