RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12259
(848 letters)
>3otd_A TRNA(His) guanylyltransferase; polymerase-like PALM domain,
catalytic carboxylates; 2.28A {Homo sapiens} PDB: 3otc_A
3otb_A 3ote_A
Length = 269
Score = 316 bits (811), Expect = e-102
Identities = 127/256 (49%), Positives = 166/256 (64%), Gaps = 16/256 (6%)
Query: 601 EFESHDRCLPNCFIVVRVDGKGFHKFTEAHGFDKPNDRSGLWLMSKAAACVIEEFNDICC 660
+FE+ D CL +C++VVR+DG+ FH+F E H F KPND L LM+K A V+EE DI
Sbjct: 11 DFEADDTCLAHCWVVVRLDGRNFHRFAEKHNFAKPNDSRALQLMTKCAQTVMEELEDIVI 70
Query: 661 AYGQSDEYSFIFSRNTNIYNRRADKIASVVCSLFTSSYGFYWDK-FCCKKLKYPPAFDSR 719
AYGQSDEYSF+F R TN + RRA K + V S F SSY FYW F + L YPP FD R
Sbjct: 71 AYGQSDEYSFVFKRKTNWFKRRASKFMTHVASQFASSYVFYWRDYFEDQPLLYPPGFDGR 130
Query: 720 VILYPTVRNLRDYLSWRQADAHINNLYNTAFWGLVQKCGHSKQEAEKILRGTVSSEKHEL 779
V++YP+ + L+DYLSWRQAD HINNLYNT FW L+Q+ G + +A+ L+GT++++K+E+
Sbjct: 131 VVVYPSNQTLKDYLSWRQADCHINNLYNTVFWALIQQSGLTPVQAQGRLQGTLAADKNEI 190
Query: 780 LFKDCKINYNNECELYKKGTIIIKSLVPSSTGSPVCNTVY---------------VPLNC 824
LF + INYNNE +Y+KGT++I V + VPL+C
Sbjct: 191 LFSEFNINYNNELPMYRKGTVLIWQKVDEVMTKEIKLPTEMEGKKMAVTRTRTKPVPLHC 250
Query: 825 DIINDKFWNENPHILD 840
DII D FW E+P ILD
Sbjct: 251 DIIGDAFWKEHPEILD 266
Score = 154 bits (390), Expect = 3e-42
Identities = 64/117 (54%), Positives = 80/117 (68%), Gaps = 1/117 (0%)
Query: 450 KKFNDICCAYGQSDEYSFIFSRNTNIYNRRADKIASVVCSLFTSSYGFYWDK-FCCKKLK 508
++ DI AYGQSDEYSF+F R TN + RRA K + V S F SSY FYW F + L
Sbjct: 63 EELEDIVIAYGQSDEYSFVFKRKTNWFKRRASKFMTHVASQFASSYVFYWRDYFEDQPLL 122
Query: 509 YPPAFDSRVILYPTVRNLRDYLSWRQADAHINNLYNTAFWGLVQKCGHSKQEPLKQL 565
YPP FD RV++YP+ + L+DYLSWRQAD HINNLYNT FW L+Q+ G + + +L
Sbjct: 123 YPPGFDGRVVVYPSNQTLKDYLSWRQADCHINNLYNTVFWALIQQSGLTPVQAQGRL 179
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 65.1 bits (158), Expect = 1e-10
Identities = 96/587 (16%), Positives = 167/587 (28%), Gaps = 197/587 (33%)
Query: 367 VNASQSDIIQLCHSNSCQPGTSLQEYSLLL--------ADLDKDGSQDLISYLVTYAGPD 418
++A + + L H G SL E+ LL+ + L + ++ L +A D
Sbjct: 1 MDAYSTRPLTLSH------G-SL-EHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADD 52
Query: 419 K-SSDIQTWSLVSQ----IRVIRLEHELPKLYEFLHKKFNDICCAY-GQSDEYSFIFSRN 472
+ ++ LV + + + ++ + + L+ + Y +D ++
Sbjct: 53 EPTTPA---ELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAK-- 107
Query: 473 TNIYNRRADKIASVVCSLFTSSYGFYWDKFCCKKLKYPPAFDSRVILYPTVR-------- 524
+ D L + Y K + +S L+ V
Sbjct: 108 ---LLQENDTTLVKTKELIKN----YITARIMAKRPFDKKSNSA--LFRAVGEGNAQLVA 158
Query: 525 ------NLRDYLSWRQADAHINNLYNTAFWGLVQKCGHSKQEPLKQLVLHKIGKNSRYS- 577
N DY + +LY T + LV E L +L+ + ++
Sbjct: 159 IFGGQGNTDDYFE------ELRDLYQT-YHVLVGDLIKFSAETLSELIRTTLDAEKVFTQ 211
Query: 578 GFDYIDWL-NFSHTPKVT-TCSCFMEFESHDRCLP-------NCFIVVRVDGKGFHKFTE 628
G + ++WL N S+TP S + S P ++V +
Sbjct: 212 GLNILEWLENPSNTPDKDYLLSIPI---S----CPLIGVIQLAHYVV----------TAK 254
Query: 629 AHGFDKPNDR---SGLWLMSKA--AACVI------EEFNDI--------------C-CAY 662
GF R G S+ A I E F C AY
Sbjct: 255 LLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAY 314
Query: 663 GQSD------EYS------------------------FIFSRNTNIYNRRADKIA----- 687
+ E S ++ N+++ + +I+
Sbjct: 315 PNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGA 374
Query: 688 -SVVCSLFTSS-YGFYWDKFCCKKLKYPPAFD-SRVILYPTVRNLRDYLSWRQADAHINN 744
++V S S YG +K K P D SR+ P S R+
Sbjct: 375 KNLVVSGPPQSLYGL---NLTLRKAKAPSGLDQSRI---P--------FSERKLKFSNRF 420
Query: 745 LYNTA-FWGLVQKCGHSK--QEAEKILRGTVSSEKHELLFKDCKIN-YNNEC--ELYKKG 798
L + F HS A ++ + KD +I Y+ +L
Sbjct: 421 LPVASPF--------HSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLS 472
Query: 799 TIIIKSLVPSSTGSPVCNTVYVPLNCDIINDKFWNENP-----HILD 840
I + +V PV W HILD
Sbjct: 473 GSISERIVDCIIRLPV----------------KWETTTQFKATHILD 503
Score = 53.1 bits (127), Expect = 4e-07
Identities = 99/649 (15%), Positives = 176/649 (27%), Gaps = 222/649 (34%)
Query: 11 AGCRTLNLE---LEGPITIARDKLLFMMRSPIFERRQMSLRSGQPPPTGGGLIALDS--V 65
R L L LE + + F I + Q P PT G A D
Sbjct: 4 YSTRPLTLSHGSLEHVLLVPTA-SFF-----IASQLQEQFNKILPEPTEG--FAADDEPT 55
Query: 66 RPVELWRKTLNNVPKEVDCGLIDINLDGVLDCIVIA-DNGYL------AVLSQATGNLLW 118
P EL K L V V+ + D VL+ + +N YL A+ ++
Sbjct: 56 TPAELVGKFLGYVSSLVEPSKVG-QFDQVLNLCLTEFENCYLEGNDIHALAAK------- 107
Query: 119 RKTNNGYKDGKMKFPLIVDDLTGDGVNDLVLISYMGPSKYQLALLSGSNGVQIGTP-LVK 177
L+ ++ T ++ +Y +++ + L +
Sbjct: 108 ---------------LLQENDTTLVKTKELIKNY-----ITARIMAKRPFDKKSNSALFR 147
Query: 178 EDCDQMTGLNLTSPDTVIYVCV--QGERE------RVASVSISDLYKSRSKSTASSNIDE 229
+ + + QG + R DLY++ I
Sbjct: 148 ---------AVGEGNAQLVAIFGGQGNTDDYFEELR-------DLYQT-YHVLVGDLIKF 190
Query: 230 SASHTANGNTASPPVAKLPPQHKSTKRQNTLTLDKYHLVIENTGVCPDH---CSAVVNIS 286
SA +++L ++ T L+ +EN PD S +
Sbjct: 191 SAET----------LSELIRTTLDAEKVFTQGLN-ILEWLENPSNTPDKDYLLSIPI--- 236
Query: 287 DDTNHTVYSFNASKTYIMQPLI-----IHFNNAANGFLLKYWEWQPDKEEQEDYYDKDKI 341
S PLI H+ A K + P + K
Sbjct: 237 --------SC---------PLIGVIQLAHYVVTA-----KLLGFTP-----GELRSYLKG 269
Query: 342 IIIRHLQERIVLVMFSPDGTPGPHIVNASQSDIIQL----CHSNSCQPGTSLQEYSLLLA 397
H Q + V + + + + I L P TSL +L
Sbjct: 270 ATG-HSQGLVTAVAIAETDS-WESFFVSVRKAITVLFFIGVRCYEAYPNTSLP--PSILE 325
Query: 398 DLDKDGSQDLISYLVTYAGPDKSSDIQTWSLVSQIRVIRLEHELPKLYEFLHKKFNDICC 457
D + ++ + S +++ + + + + K N
Sbjct: 326 D-SLENNEGVPSPMLSISNLTQE------QVQDYVN-----------------KTN---- 357
Query: 458 AYGQSDEYSFIFSRNTNIYNRRADKIASVVC----SLFTSSYGFYWDKFCCKKLKYPPAF 513
++ + + I N A + VV SL YG +K K P
Sbjct: 358 SHLPAGKQVEISLVNG------AKNL--VVSGPPQSL----YGL---NLTLRKAKAPSGL 402
Query: 514 D-SRV-----------------------ILYPTVRNL-----RDYLSWRQADAHINNLYN 544
D SR+ +L P + ++ +S+ D I +Y+
Sbjct: 403 DQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQI-PVYD 461
Query: 545 TAFWGLVQKCGHSKQEPLKQLVLHKIGKNSRYSGFDYIDW---LNFSHT 590
T ++ S E + ++ + W F T
Sbjct: 462 TFDGSDLRVLSGSISERIVDCIIRLP-----------VKWETTTQFKAT 499
Score = 48.9 bits (116), Expect = 7e-06
Identities = 33/161 (20%), Positives = 55/161 (34%), Gaps = 37/161 (22%)
Query: 519 LY---PTVRNLRDYLSWRQADAHINNLYNTAFWGLVQKCGHSKQEPLKQLVLHKIGKNSR 575
LY +++ W +AD H + Y + +V P L +H G+ +
Sbjct: 1635 LYKTSKAAQDV-----WNRADNHFKDTYGFSILDIV------INNP-VNLTIHFGGEKGK 1682
Query: 576 YSGFDYIDWLNFSHTPKVTTCSCFMEFESHDRCLPN-CFIVVRVDG-KGFHKFTEAHGFD 633
+Y + F + + F+ + + F KG T+ F
Sbjct: 1683 RIRENYSA-MIFETIVDGKLKTEKI-FKEINEHSTSYTF-----RSEKGLLSATQ---FT 1732
Query: 634 KPNDRSGLWLMSKAAACVIEE----FNDICCAYGQS-DEYS 669
+P L LM KAA ++ D A G S EY+
Sbjct: 1733 QP----ALTLMEKAAFEDLKSKGLIPADATFA-GHSLGEYA 1768
Score = 36.2 bits (83), Expect = 0.063
Identities = 39/223 (17%), Positives = 67/223 (30%), Gaps = 85/223 (38%)
Query: 213 DLYKSRSKSTASSNI-DESASHTAN--GNTASPPVAKLPPQ---HKSTKRQNTLTLDKYH 266
DLYK+ S A+ ++ + + +H + G + V P H ++ + + Y
Sbjct: 1634 DLYKT---SKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIR-ENYS 1689
Query: 267 LVIENTGVCPDHCSAVVNISDDTNH--TVYSFNASK-----TYIMQPLIIHFNNAANGFL 319
+I T D I + N T Y+F + K T QP + L
Sbjct: 1690 AMIFET--IVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPAL---------TL 1738
Query: 320 LKYWEWQPDKEEQEDYYDKDKIIIIRHLQERIVLVMFSPDG-TPGPHIVNASQSDIIQLC 378
++ L+ + G P A
Sbjct: 1739 MEK-------------------AAFEDLKSK---------GLIPADATF-A--------- 1760
Query: 379 HSNSCQPGTSLQEYSLLLA-----DLDKDGSQDLISYLVTYAG 416
G SL EY+ L + ++ L+ +V Y G
Sbjct: 1761 -------GHSLGEYAALASLADVMSIE-----SLVE-VVFYRG 1790
Score = 33.9 bits (77), Expect = 0.33
Identities = 18/100 (18%), Positives = 31/100 (31%), Gaps = 34/100 (34%)
Query: 722 LY---PTVRNLRDYLSWRQADAHINNLYNTAFWGLVQKCGHSKQEAEKILRG-----TVS 773
LY +++ W +AD H + Y G S + I+ T+
Sbjct: 1635 LYKTSKAAQDV-----WNRADNHFKDTY-----------GFSILD---IVINNPVNLTI- 1674
Query: 774 SEKHELLFKDCKI--NYNN-ECELYKKGTIIIKSLVPSST 810
H K +I NY+ E G + + +
Sbjct: 1675 ---HFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEIN 1711
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 61.4 bits (148), Expect = 1e-09
Identities = 81/511 (15%), Positives = 143/511 (27%), Gaps = 127/511 (24%)
Query: 387 TSLQEYSL--LLADLDKDGSQDLISYLVTYAGPDKSSDIQTWSLVSQIRVIRLEHELPKL 444
T +Y +L+ + + V D I + + I I + +
Sbjct: 11 TGEHQYQYKDILSVFEDAFVDNFDCKDV----QDMPKSILSKEEIDHI--IMSKDAVSGT 64
Query: 445 YEFLHKKFNDICCAYGQS-----------DEYSFIFSRNTNIYNRRADKIASVVCSLFTS 493
+ + Y F+ S + S+ T
Sbjct: 65 LRLF-----WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQP---------SMMTR 110
Query: 494 SYGFYWDKFCCKKLKYPPAFDSRVILYPTVRN----LRD--YL----------SWRQADA 537
Y D+ + SR+ Y +R LR + +W D
Sbjct: 111 MYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDV 170
Query: 538 -----HINNLYNTAFWGLVQKCGHSKQEPLKQL--VLHKIGKNSRYSGFDYIDWLNFSHT 590
+ FW ++ C +S + L+ L +L++I N + + S
Sbjct: 171 CLSYKVQCKMDFKIFWLNLKNC-NSPETVLEMLQKLLYQIDPN-------WTSRSDHSSN 222
Query: 591 PKVTTCSCFMEFES--HDRCLPNCFIVVR-V-DGKGFHKF---------TEAHGFDKPND 637
K+ S E + NC +V+ V + K ++ F T
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTT--------RF 274
Query: 638 RSGLWLMSKAAACVI--EEFNDICCAYGQSDEYSF-IFSRNTNIYN----RRADKIASVV 690
+ +S A I + + + + + + + R
Sbjct: 275 KQVTDFLSAATTTHISLDHHSM-----TLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR 329
Query: 691 CSLFTSSY--GF----YWDKFCCKKLKYPPAFDSRV-ILYPT-VRNLRDYLSWRQADAHI 742
S+ S G W C KL +S + +L P R + D LS AHI
Sbjct: 330 LSIIAESIRDGLATWDNWKHVNCDKLT--TIIESSLNVLEPAEYRKMFDRLSVFPPSAHI 387
Query: 743 NNLYNTAFWG---------LVQKCGHSKQEAEK-ILRGTVSSEKHELLFKDCKINYNNEC 792
+ + W +V K H EK T+S + + K+ NE
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVNKL-HKYSLVEKQPKESTISI--PSIYL-ELKVKLENEY 443
Query: 793 ELYKKGTII----IKSLVPSSTGSPVCNTVY 819
L++ I+ I S P Y
Sbjct: 444 ALHRS--IVDHYNIPKTFDSDDLIPPYLDQY 472
Score = 45.6 bits (107), Expect = 7e-05
Identities = 56/428 (13%), Positives = 128/428 (29%), Gaps = 156/428 (36%)
Query: 23 PITIARDKLLFMMRSPIFERRQMSLRSGQPPPTGGGLIALDSVRPVELWR------KTLN 76
I + +L +++S +E L+ L +V+ + W K L
Sbjct: 226 RIHSIQAELRRLLKSKPYEN---------------CLLVLLNVQNAKAWNAFNLSCKIL- 269
Query: 77 NVPKEV---DCGLIDINLDGVLDCIVIADNGYLAVLSQATGNLLWRKTNNGYKD----GK 129
+ + D L + D+ + + +LL + + +D
Sbjct: 270 -----LTTRFKQVTDF-LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVL 323
Query: 130 MKFPLIV-----------------DDLTGDGVNDLVLISY--MGPSKYQ-----LALLSG 165
P + + D + ++ S + P++Y+ L++
Sbjct: 324 TTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF-- 381
Query: 166 SNGVQIGTPL--------VKEDCDQ-MTGLNLTSPDTVIYVCVQGERERVASVSISDLY- 215
I T L +K D + L+ S V+ + + +++SI +Y
Sbjct: 382 PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS-------LVEKQPKE-STISIPSIYL 433
Query: 216 KSRSKSTASSNIDESASHTANGNTASPPVAKLPPQHKSTKRQNTLTLDKYHLVIENTGVC 275
+ + K ++ + H+S +D Y++
Sbjct: 434 ELKVK------LENEYAL-----------------HRS-------IVDHYNI---PKTFD 460
Query: 276 PDHCSAVVNISDDTNHTVYSFNASKTYIMQPLIIHFNNAANG-----FLLKY----W--- 323
D D Y ++ +I H N + F + + +
Sbjct: 461 SDDLIP--PYLDQ-----YFYS----HIGH----HLKNIEHPERMTLFRMVFLDFRFLEQ 505
Query: 324 -------EWQP-----DKEEQEDYYDKDKIIIIRHLQERIV--LVMFSPDGTPGPHIVNA 369
W + +Q +Y K I ER+V ++ F P +++ +
Sbjct: 506 KIRHDSTAWNASGSILNTLQQLKFY-KPYICDNDPKYERLVNAILDFLP--KIEENLICS 562
Query: 370 SQSDIIQL 377
+D++++
Sbjct: 563 KYTDLLRI 570
>2bwr_A Psathyrella velutina lectin; N-acetyl-glucosamine; HET: MES; 1.5A
{Psathyrella velutina} PDB: 2bwm_A* 2c25_A* 2c4d_A*
Length = 401
Score = 43.7 bits (103), Expect = 2e-04
Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 3/69 (4%)
Query: 87 IDINLDGVLDCIVIADNGYLAVLSQATGNLLWRKTNNGYKDG---KMKFPLIVDDLTGDG 143
+ + GV D + + G + + ++ N GY G K ++ D TGD
Sbjct: 11 VPTRIPGVADLVGFGNGGVYIIRNSLLIQVVKVINNFGYDAGGWRVEKHVRLLADTTGDN 70
Query: 144 VNDLVLISY 152
+D+V
Sbjct: 71 QSDVVGFGE 79
Score = 40.3 bits (94), Expect = 0.002
Identities = 17/76 (22%), Positives = 26/76 (34%), Gaps = 6/76 (7%)
Query: 85 GLIDINLDGVLDCIVIADNGYLAVLSQATGNLLWRK------TNNGYKDGKMKFPLIVDD 138
L D+ DG+LD + +N + G + P +V D
Sbjct: 174 FLADVTGDGLLDVVGFGENQVYIARNSGNGTFQPAQAVVNNFCIGAGGWTISAHPRVVAD 233
Query: 139 LTGDGVNDLVLISYMG 154
LTGD D++ G
Sbjct: 234 LTGDRKADILGFGVAG 249
Score = 40.3 bits (94), Expect = 0.002
Identities = 15/71 (21%), Positives = 24/71 (33%), Gaps = 7/71 (9%)
Query: 88 DINLDGVLDCIVIADNGYLAVL------SQATGNLLWRKTNNGYKDGKMKFPLIVDDLTG 141
D+ G D IV +G + + A L + + D+TG
Sbjct: 122 DLRKTGRAD-IVGFGDGGIYISRNNGGGQFAPAQLALNNFGYAQGWRLDRHLRFLADVTG 180
Query: 142 DGVNDLVLISY 152
DG+ D+V
Sbjct: 181 DGLLDVVGFGE 191
Score = 39.5 bits (92), Expect = 0.004
Identities = 18/70 (25%), Positives = 25/70 (35%), Gaps = 7/70 (10%)
Query: 85 GLIDINLDGVLDCIVIADNGYLAV-LSQATGNLLWRK-----TNNGYKDGKMKFPLIVDD 138
+ + V D I+ + + V L+ G K K P V D
Sbjct: 285 CVSSLTNKKVGD-IIGFGDAGVYVALNNGNGTFGPVKRVIDNFGYNQGWRVDKHPRFVVD 343
Query: 139 LTGDGVNDLV 148
LTGDG D+V
Sbjct: 344 LTGDGCADIV 353
Score = 38.0 bits (88), Expect = 0.012
Identities = 14/76 (18%), Positives = 23/76 (30%), Gaps = 7/76 (9%)
Query: 85 GLIDINLDGVLDCIVIADNGYLAV-LSQATGN-----LLWRKTNNGYKDGKMKFPLIVDD 138
+ D+ D D I+ + L+ G L+ + K V
Sbjct: 230 VVADLTGDRKAD-ILGFGVAGVYTSLNNGNGTFGAVNLVLKDFGVNSGWRVEKHVRCVSS 288
Query: 139 LTGDGVNDLVLISYMG 154
LT V D++ G
Sbjct: 289 LTNKKVGDIIGFGDAG 304
Score = 37.2 bits (86), Expect = 0.022
Identities = 10/73 (13%), Positives = 17/73 (23%), Gaps = 9/73 (12%)
Query: 88 DINLDGVLDCIVIADNGYLAV-LSQATGNLLWRKT-------NNGYKDGKMKFPLIVDDL 139
D D D +V + + + + K + DL
Sbjct: 65 DTTGDNQSD-VVGFGENGVWISTNNGNNTFVDPPKMVLANFAYAAGGWRVEKHIRFMADL 123
Query: 140 TGDGVNDLVLISY 152
G D+V
Sbjct: 124 RKTGRADIVGFGD 136
Score = 29.5 bits (66), Expect = 5.5
Identities = 7/43 (16%), Positives = 19/43 (44%)
Query: 368 NASQSDIIQLCHSNSCQPGTSLQEYSLLLADLDKDGSQDLISY 410
N + + ++ + G + ++ + DL DG D++ +
Sbjct: 313 NGTFGPVKRVIDNFGYNQGWRVDKHPRFVVDLTGDGCADIVGF 355
Score = 28.7 bits (64), Expect = 10.0
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 385 PGTSLQEYSLLLADLDKDGSQDLISY 410
G ++++ LLAD D D++ +
Sbjct: 52 GGWRVEKHVRLLADTTGDNQSDVVGF 77
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 41.1 bits (95), Expect = 4e-04
Identities = 9/41 (21%), Positives = 16/41 (39%), Gaps = 13/41 (31%)
Query: 330 EEQEDYYDKDKIIIIRHLQERIVLVMFSPDGTPGPHIVNAS 370
E+Q ++ LQ L +++ D P I A+
Sbjct: 18 EKQA----------LKKLQAS--LKLYADDSAPALAI-KAT 45
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant;
triangular beta-sheet cluster, signaling protein; 3.10A
{Homo sapiens}
Length = 369
Score = 39.3 bits (91), Expect = 0.004
Identities = 17/115 (14%), Positives = 39/115 (33%), Gaps = 13/115 (11%)
Query: 55 TGGGLIALDSVRPVELWRKTLNNVPKEVDCGLIDINLDGVLDCIVIADNGYLAVLSQATG 114
T + D+ W T + + D++ V +G + + +G
Sbjct: 138 TEYTITMYDTKTRELRWNATYFDYAASLPE--DDVDYKMSH--FVSNGDGLVVTVDSESG 193
Query: 115 NLLWRKTNNGYKDGKMKFPLI-VDDLTGDGVNDLVLISYMGPSKYQLALLSGSNG 168
++LW + P++ +G+ ++ I+ + L +SG G
Sbjct: 194 DVLWIQNYAS--------PVVAFYVWQREGLRKVMHINVAVETLRYLTFMSGEVG 240
Score = 32.3 bits (73), Expect = 0.62
Identities = 15/73 (20%), Positives = 24/73 (32%), Gaps = 4/73 (5%)
Query: 52 PPPTGGGLIALDSVRPVELWRKTLNNVPKEVDCGLIDINLDGVLDCIVIADNGYLAVLSQ 111
P P G L L S L + +P+ V + DG+L + V+
Sbjct: 54 PDPNDGSLYTLGSKNNEGLTKLPFT-IPELVQASPCRSS-DGIL--YMGKKQDIWYVIDL 109
Query: 112 ATGNLLWRKTNNG 124
TG ++
Sbjct: 110 LTGEKQQTLSSAF 122
Score = 29.2 bits (65), Expect = 5.7
Identities = 20/223 (8%), Positives = 51/223 (22%), Gaps = 33/223 (14%)
Query: 92 DGVLDCIVIADNGYLAVLSQATGNLLWRKTNNGYKDGKMKFPLIVDDLTGDGVNDLVLIS 151
+L + + + T L W T Y + + + +
Sbjct: 130 TSLL--YLGRTEYTITMYDTKTRELRWNATYFDYAASLPEDDVDYK-------MSHFVSN 180
Query: 152 YMGPSKYQLALLSGSNGVQ----------IGTPLVKEDCDQMTGLNLTSPDTVIYVCVQG 201
G + + +G + + + + + + +T+ Y+
Sbjct: 181 GDG----LVVTVDSESGDVLWIQNYASPVVAFYVWQREGLRKVMHINVAVETLRYLTFMS 236
Query: 202 ERERVASVSISDLYKSRSKSTASSNIDESASH----------TANGNTASPPVAKLPPQH 251
+ K + + + G P + LP
Sbjct: 237 GEVGRITKWKYPFPKETEAKSKLTPTLYVGKYSTSLYASPSMVHEGVAVVPRGSTLPLLE 296
Query: 252 KSTKRQNTLTLDKYHLVIENTGVCPDHCSAVVNISDDTNHTVY 294
T+ ++ +T V D N + +
Sbjct: 297 GPQTDGVTIGDKGESVITPSTDVKFDPGLKSKNKLNYLRNYWL 339
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane
protein folding, negative, BAMA, protein binding; 1.65A
{Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A
2yh3_A
Length = 376
Score = 39.0 bits (91), Expect = 0.005
Identities = 16/96 (16%), Positives = 36/96 (37%), Gaps = 14/96 (14%)
Query: 57 GGLIALDSVRPVELWRKTLNNVPKEVDCGLIDIN-----LDGVLDCIVIADNGYLAVLSQ 111
G + AL++ E+W +L ++ G + + ++ + L+
Sbjct: 63 GLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHV--YIGSEKAQVYALNT 120
Query: 112 ATGNLLWRKTNNGYKDGKMKFPLIVDDL----TGDG 143
+ G + W+ G + P++ D L T +G
Sbjct: 121 SDGTVAWQTKVAGEALSR---PVVSDGLVLIHTSNG 153
Score = 34.0 bits (78), Expect = 0.21
Identities = 14/87 (16%), Positives = 35/87 (40%), Gaps = 9/87 (10%)
Query: 56 GGGLIALDSVRPVELWRKTLNNVPKEVDCG-LIDINLDGVLD---CIVIADNGYLAVLSQ 111
G + A+ + +W++ ++ + L D++ V+ +A NG L L
Sbjct: 197 NGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDL 256
Query: 112 ATGNLLWRKTNNGYKDGKMKFPLIVDD 138
+G ++W++ D ++ +
Sbjct: 257 RSGQIMWKRELGSVND-----FIVDGN 278
Score = 33.6 bits (77), Expect = 0.26
Identities = 14/64 (21%), Positives = 27/64 (42%), Gaps = 9/64 (14%)
Query: 57 GGLIALDSVRPVELWRKTLNNVPKEVDCG-LIDINLDGVLDCIVIADNGYLAVLSQATGN 115
+ AL++ W+ V E ++ DG++ ++ NG L L++A G
Sbjct: 113 AQVYALNTSDGTVAWQT---KVAGEALSRPVVS---DGLV--LIHTSNGQLQALNEADGA 164
Query: 116 LLWR 119
+ W
Sbjct: 165 VKWT 168
Score = 33.3 bits (76), Expect = 0.34
Identities = 17/91 (18%), Positives = 33/91 (36%), Gaps = 12/91 (13%)
Query: 57 GGLIALDSVRPVELWRKTLNNVPKEVDCGLIDINLDGVLDCIVIADNGYLAVLSQATGNL 116
++AL V LW ++ + + + +G L +V GYL ++ G
Sbjct: 287 DRVMALTIDGGVTLWTQSD--LLHRLLTSPVLY--NGNL--VVGDSEGYLHWINVEDGRF 340
Query: 117 LWRKTNNGYKDGKMKFPLIVDD----LTGDG 143
+ ++ + G P+ D DG
Sbjct: 341 VAQQKVDS--SGFQTEPVAADGKLLIQAKDG 369
Score = 32.9 bits (75), Expect = 0.38
Identities = 20/108 (18%), Positives = 36/108 (33%), Gaps = 6/108 (5%)
Query: 64 SVRPVELWRKTLNNVPKEVDCGLIDINLDGVLDCIVIADNGYLAVLSQATGNLLWRKTNN 123
P W ++ + L D V+ G + L+ G +W +
Sbjct: 25 QFTPTTAWSTSVGSGIGNFYSNLHPALADNVV--YAADRAGLVKALNADDGKEIWSVSLA 82
Query: 124 GYKDGKMKFPLIVDDLTGDGVNDLVLISYMGPSKYQLALLSGSNGVQI 171
K P ++ G V+ + Y+G K Q+ L+ S+G
Sbjct: 83 EKDGWFSKEPALLS--GGVTVSGGHV--YIGSEKAQVYALNTSDGTVA 126
Score = 31.7 bits (72), Expect = 1.1
Identities = 22/119 (18%), Positives = 43/119 (36%), Gaps = 24/119 (20%)
Query: 56 GGGLIALDSVRPVELWRKTLNNV-PKEVDCGLIDINLDGVLDCIVIADNGYLAVLSQATG 114
G L ALD +W++ L +V VD I ++ N + L+ G
Sbjct: 248 NGNLTALDLRSGQIMWKRELGSVNDFIVDGNRI----------YLVDQNDRVMALTIDGG 297
Query: 115 NLLWRKTNNGYKDGKMKFPLIVDDLTGDGVNDLVLISYMGPSKYQLALLSGSNGVQIGT 173
LW +++ ++ P++ + LV+ G L ++ +G +
Sbjct: 298 VTLWTQSDLLHRLLTS--PVLYNGN-------LVVGDSEG----YLHWINVEDGRFVAQ 343
>4a7k_A Aldos-2-ulose dehydratase; lyase, dehydratase/isomerase, lignin
degradation, cortalcerone/microthecin forming,
metalloenzyme; 2.00A {Phanerochaete chrysosporium} PDB:
4a7y_A* 4a7z_A*
Length = 900
Score = 37.3 bits (85), Expect = 0.025
Identities = 16/95 (16%), Positives = 23/95 (24%), Gaps = 11/95 (11%)
Query: 71 WRK-TLNNVPKEVDCGLIDINLDGVLDCIVIADNGYLAVLSQATGNLLWRKTNNGYKDGK 129
W L + V DI +G D I+ G A G + N G
Sbjct: 83 WTPVPLAKLDFPVAMHYADITKNGFNDVIITDQYGSSMDDIWAYGGRVSWLENPGELRDN 142
Query: 130 MKFPLI----------VDDLTGDGVNDLVLISYMG 154
I T +V + +
Sbjct: 143 WTMRTIGHSPGMHRLKAGHFTRTDRVQVVAVPIVV 177
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer,
oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas
putida} SCOP: a.3.1.6 b.70.1.1
Length = 668
Score = 31.9 bits (72), Expect = 1.0
Identities = 22/99 (22%), Positives = 33/99 (33%), Gaps = 14/99 (14%)
Query: 59 LIALDSVRPVELWR---KTLNNVPKEVDCGLIDINLDGVLDC----IVIADNGYLAVLSQ 111
+IA+D+ ELWR + + C D GV V +G L L
Sbjct: 78 VIAVDAASGKELWRYDPEVAKVKARTSCC---DAVNRGVALWGDKVYVGTLDGRLIALDA 134
Query: 112 ATGNLLWRKTNNGYKDGKMKF--PLIVDDL--TGDGVND 146
TG +W + P +V G+G +
Sbjct: 135 KTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAE 173
>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA
repair, demethylase, beta jellyroll; HET: AKG; 1.50A
{Homo sapiens} SCOP: b.82.2.10
Length = 238
Score = 31.0 bits (69), Expect = 1.4
Identities = 21/129 (16%), Positives = 35/129 (27%), Gaps = 12/129 (9%)
Query: 500 DKFCCKKLKYPPAFDSRVILYPTVRNLRDYLSWRQADAHINNLYNTAFWGLVQKCGHSKQ 559
D+ ++ P SRV LYP ++ ++AD + L W
Sbjct: 25 DREGVYEISLSPTGVSRVCLYP------GFVDVKEADWILEQLCQDVPWKQRTGIREDIT 78
Query: 560 EPLKQLVLHKIGKNSRYSGFDYIDWLNFSHTPKVTTCSCFMEFESHDRCLPNCFIVVRVD 619
+L YS I H V E+ + + +
Sbjct: 79 YQQPRLTAWYGELPYTYSR---ITMEPNPHWHPVLRTLKNRIEENTGHTFNSLLCNLYRN 135
Query: 620 GK---GFHK 625
K +H
Sbjct: 136 EKDSVDWHS 144
>2kzw_A Uncharacterized protein; structural genomics, northeast structural
genomics consortiu PSI-2, protein structure initiative;
NMR {Methanosarcina mazei}
Length = 145
Score = 29.5 bits (66), Expect = 2.1
Identities = 7/59 (11%), Positives = 15/59 (25%), Gaps = 2/59 (3%)
Query: 267 LVIENTGVCPDHCSAVVNISDDTNHTVYSFNASKTYIMQPLIIHFNNAANGFLLKYWEW 325
+ D+ + + F + T PL + F + + W
Sbjct: 37 YAVNPEAGSMDYMPLMEYLHSSPVLPTARFTSDITEGFAPLSVRFKDFSENAT--SRLW 93
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage
repair; HET: DNA; 3.31A {Homo sapiens}
Length = 408
Score = 30.3 bits (69), Expect = 3.0
Identities = 9/37 (24%), Positives = 13/37 (35%)
Query: 354 VMFSPDGTPGPHIVNASQSDIIQLCHSNSCQPGTSLQ 390
SP T + ++ +QLC S LQ
Sbjct: 147 HHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQ 183
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM;
1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Length = 591
Score = 30.4 bits (68), Expect = 3.0
Identities = 19/81 (23%), Positives = 29/81 (35%), Gaps = 14/81 (17%)
Query: 83 DCGLIDINLDGVLDCIVIADNGYLAVLSQA-------------TGNLLWRK-TNNGYKDG 128
D + D++ DG + I+ D SQ G LWR + G
Sbjct: 116 DASVGDVDGDGQYELILKWDPSNSKDNSQDGYTGDVLIDAYKLDGTKLWRINLGKNIRAG 175
Query: 129 KMKFPLIVDDLTGDGVNDLVL 149
+V DL GDG ++ +
Sbjct: 176 AHYTQFMVYDLDGDGKAEVAM 196
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold,
cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A
{Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Length = 677
Score = 30.4 bits (68), Expect = 3.4
Identities = 19/100 (19%), Positives = 38/100 (38%), Gaps = 15/100 (15%)
Query: 59 LIALDSVRPVELWR---KTLNNVPKEVDCGLIDINLDGVLDC----IVIADNGYLAVLSQ 111
+ A+D+ +W + + + C +++ GV V A +G L L
Sbjct: 89 VHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVN---RGVALWKGKVYVGAWDGRLIALDA 145
Query: 112 ATGNLLWRKTNNGYKDGKMKF---PLIVDD--LTGDGVND 146
ATG +W + + G + P + + G+G +
Sbjct: 146 ATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAE 185
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer,
oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Length = 689
Score = 29.6 bits (66), Expect = 5.6
Identities = 18/100 (18%), Positives = 33/100 (33%), Gaps = 15/100 (15%)
Query: 59 LIALDSVRPVELWR---KTLNNVPKEVDCGLIDINLDGVLDC----IVIADNGYLAVLSQ 111
+ ALD+ +W+ ++ + E C ++ GV V +G L +
Sbjct: 82 VYALDARDGRLIWKYDPQSDRHRAGEACCDAVNR---GVAVWKGKVYVGVLDGRLEAIDA 138
Query: 112 ATGNLLWRKTNNGYKDGKMKF---PLIVDDL--TGDGVND 146
TG W P +V+ G+G +
Sbjct: 139 KTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAE 178
>3v4v_A Integrin alpha-4; cell adhesion, madcam-1, membrane; HET: NAG BMA
MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_A*
Length = 597
Score = 29.4 bits (65), Expect = 5.8
Identities = 14/71 (19%), Positives = 22/71 (30%), Gaps = 5/71 (7%)
Query: 88 DINLDGVLDCIVIA----DNGYLAVLSQATGNLLWRKTNNGYKDGKM-KFPLIVDDLTGD 142
+ + A G + S L G K G + DL D
Sbjct: 226 HFRSQHTTEVVGGAPQHEQIGKAYIFSIDEKELNILHEMKGKKLGSYFGASVCAVDLNAD 285
Query: 143 GVNDLVLISYM 153
G +DL++ + M
Sbjct: 286 GFSDLLVGAPM 296
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade
beta-propeller., struct genomics, PSI-2, protein
structure initiative; 2.00A {Methanococcus maripaludis}
Length = 330
Score = 29.3 bits (66), Expect = 5.9
Identities = 4/27 (14%), Positives = 7/27 (25%), Gaps = 2/27 (7%)
Query: 92 DGVLDCIVIADNGYLAVLSQATGNLLW 118
+G + NG L +
Sbjct: 305 NGTI--YFGTRNGKFYALFNLEHHHHH 329
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination,
hydrolase-recombination complex; 2.00A {Sulfolobus
solfataricus} SCOP: c.37.1.19
Length = 271
Score = 28.7 bits (65), Expect = 6.6
Identities = 7/12 (58%), Positives = 9/12 (75%)
Query: 184 TGLNLTSPDTVI 195
G+NLTS + VI
Sbjct: 177 FGINLTSANRVI 188
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex,
hydrolase/DNA complex complex; 3.00A {Sulfolobus
solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Length = 500
Score = 29.1 bits (66), Expect = 7.2
Identities = 7/12 (58%), Positives = 9/12 (75%)
Query: 184 TGLNLTSPDTVI 195
G+NLTS + VI
Sbjct: 406 FGINLTSANRVI 417
>1jmo_A HC-II, heparin cofactor II, HLS2, serin; serpin, thrombin,
protease, inhibition, inhibitor, blood CLO; HET: TYS NDG
NAG; 2.20A {Homo sapiens} SCOP: e.1.1.1 PDB: 1jmj_A*
Length = 480
Score = 28.9 bits (65), Expect = 9.4
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Query: 324 EWQPDKEEQEDYYDKDKIIIIRHLQERIVLVMFSPDGTPGPHIVNASQSDIIQLCHSNS 382
+W P+ EE +DY D +K I + I +V + P + S +I+QL H S
Sbjct: 49 DWIPEGEEDDDYLDLEK--IFSEDDDYIDIV---DSLSVSPTDSDVSAGNILQLFHGKS 102
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.136 0.426
Gapped
Lambda K H
0.267 0.0425 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 13,059,172
Number of extensions: 784450
Number of successful extensions: 1764
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1738
Number of HSP's successfully gapped: 46
Length of query: 848
Length of database: 6,701,793
Length adjustment: 102
Effective length of query: 746
Effective length of database: 3,853,851
Effective search space: 2874972846
Effective search space used: 2874972846
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)