RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12259
         (848 letters)



>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 210

 Score = 30.6 bits (68), Expect = 0.61
 Identities = 20/117 (17%), Positives = 33/117 (28%), Gaps = 10/117 (8%)

Query: 511 PAFDSRVILYPTVRNLRDYLSWRQADAHINNLYNTAFWGLVQKCGHSKQEPLKQLVLHKI 570
           P   SRV LYP       ++  ++AD  +  L     W               +L     
Sbjct: 15  PTGVSRVCLYP------GFVDVKEADWILEQLCQDVPWKQRTGIREDITYQQPRLTAWYG 68

Query: 571 GKNSRYSGFDYIDWLNFSHTPKVTTCSCFMEFESHDRCLPNCFIVVRV--DGKGFHK 625
                YS        ++   P + T    +E  +          + R   D   +H 
Sbjct: 69  ELPYTYSRITMEPNPHW--HPVLRTLKNRIEENTGHTFNSLLCNLYRNEKDSVDWHS 123


>d1yqga1 a.100.1.10 (A:153-263) Pyrroline-5-carboxylate reductase
           ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}
          Length = 111

 Score = 27.6 bits (61), Expect = 2.7
 Identities = 9/67 (13%), Positives = 15/67 (22%), Gaps = 2/67 (2%)

Query: 542 LYNTAFWGLVQKCGHSKQEPLKQLV--LHKIGKNSRYSGFDYIDWLNFSHTPKVTTCSCF 599
               A      + G    E     +         +  +G D+        +   TT    
Sbjct: 21  YLLDALQNAAIRQGFDMAEARALSLATFKGAVALAEQTGEDFEKLQKNVTSKGGTTHEAV 80

Query: 600 MEFESHD 606
             F  H 
Sbjct: 81  EAFRRHR 87


>d1zcha1 d.90.1.1 (A:1-249) Hypothetical oxidoreductase YcnD
           {Bacillus subtilis [TaxId: 1423]}
          Length = 249

 Score = 28.6 bits (63), Expect = 3.1
 Identities = 15/117 (12%), Positives = 32/117 (27%), Gaps = 12/117 (10%)

Query: 335 YYDKDKIIIIRHLQERIVLVMFSPDGTPGPHIVNASQSDIIQLCHSNSCQPGTSLQEYSL 394
             +  ++I +  L + +  +     G P        +     + H  +      L     
Sbjct: 139 RGNPQELIELLELPKYVFPLSGLVIGHPADRSAKKPRLPQEAVNHQETYLNQDELTS--- 195

Query: 395 LLADLDKDGSQDLISYLVTYAGPDKSSDIQTWSLVSQIRVIRLEHELPKLYEFLHKK 451
            +   D    + +  Y           + + WS    I         P + E L K+
Sbjct: 196 HIQAYD----EQMSEY---MNKRTNGKETRNWS--QSIASYYERLYYPHIREMLEKQ 243


>d1b56a_ b.60.1.2 (A:) Epidermal fatty acid binding protein {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 133

 Score = 27.1 bits (60), Expect = 4.5
 Identities = 13/88 (14%), Positives = 26/88 (29%), Gaps = 4/88 (4%)

Query: 278 HCSAVVNIS-DDTNHTVYSFNASKTYIMQPLI---IHFNNAANGFLLKYWEWQPDKEEQE 333
                  I+ D  N T+ + +  KT      +        A          +      Q 
Sbjct: 36  MAKPDCIITCDGKNLTIKTESTLKTTQFSCTLGEKFEETTADGRKTQTVCNFTDGALVQH 95

Query: 334 DYYDKDKIIIIRHLQERIVLVMFSPDGT 361
             +D  +  I R L++  ++V    +  
Sbjct: 96  QEWDGKESTITRKLKDGKLVVECVMNNV 123


>d1tyea_ b.69.8.1 (A:) Integrin alpha N-terminal domain {Human (Homo
           sapiens), isoform IIb [TaxId: 9606]}
          Length = 452

 Score = 27.6 bits (60), Expect = 6.8
 Identities = 16/76 (21%), Positives = 28/76 (36%), Gaps = 11/76 (14%)

Query: 88  DINLDGVLDCIVIA------DNGYLAVLSQATGNLLWR--KTNNGYKDGKMKFPLIVD-- 137
           D++ DG  D  V A        G + V    +  L  R  +  +        F   +   
Sbjct: 365 DLDRDGYNDIAVAAPYGGPSGRGQVLVFLGQSEGLRSRPSQVLDSPFPTGSAFGFSLRGA 424

Query: 138 -DLTGDGVNDLVLISY 152
            D+  +G  DL++ +Y
Sbjct: 425 VDIDDNGYPDLIVGAY 440


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.136    0.426 

Gapped
Lambda     K      H
   0.267   0.0462    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,286,950
Number of extensions: 159599
Number of successful extensions: 359
Number of sequences better than 10.0: 1
Number of HSP's gapped: 356
Number of HSP's successfully gapped: 8
Length of query: 848
Length of database: 2,407,596
Length adjustment: 93
Effective length of query: 755
Effective length of database: 1,130,706
Effective search space: 853683030
Effective search space used: 853683030
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.4 bits)