Query psy12263
Match_columns 65
No_of_seqs 117 out of 255
Neff 4.1
Searched_HMMs 46136
Date Fri Aug 16 22:54:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12263.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12263hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2614|consensus 98.8 1.2E-09 2.7E-14 84.5 1.5 57 2-65 198-256 (420)
2 PF07151 DUF1391: Protein of u 77.8 1.9 4.2E-05 25.0 1.8 35 18-61 11-45 (49)
3 COG2088 SpoVG Uncharacterized 50.9 10 0.00022 24.7 1.4 19 15-33 39-60 (95)
4 PLN02985 squalene monooxygenas 50.8 28 0.00061 27.1 4.0 37 6-49 237-274 (514)
5 PF08350 DUF1724: Domain of un 42.6 20 0.00044 20.9 1.7 15 16-30 20-34 (64)
6 cd05859 Ig4_PDGFR-alpha Fourth 38.4 44 0.00095 20.3 2.8 23 8-30 1-23 (101)
7 PRK06126 hypothetical protein; 33.3 93 0.002 23.7 4.4 24 6-30 224-249 (545)
8 PF14353 CpXC: CpXC protein 30.3 65 0.0014 20.2 2.7 24 2-25 47-70 (128)
9 PF10568 Tom37: Outer mitochon 28.9 27 0.00058 20.7 0.7 7 10-16 1-7 (72)
10 cd08380 C2_PI3K_like C2 domain 28.0 71 0.0015 20.6 2.6 27 4-30 112-141 (156)
11 PF01797 Y1_Tnp: Transposase I 27.8 19 0.00041 21.7 -0.1 20 3-30 45-64 (121)
12 TIGR03330 SAM_DCase_Bsu S-aden 27.4 48 0.0011 21.1 1.7 13 9-21 65-77 (112)
13 PF02675 AdoMet_dc: S-adenosyl 26.4 46 0.00099 20.6 1.5 14 9-22 60-73 (106)
14 cd08693 C2_PI3K_class_I_beta_d 26.3 81 0.0018 21.3 2.8 26 5-30 126-159 (173)
15 PRK03124 S-adenosylmethionine 25.8 53 0.0012 21.6 1.8 13 9-21 66-78 (127)
16 PRK01706 S-adenosylmethionine 25.1 55 0.0012 21.4 1.7 13 9-21 68-80 (123)
17 PRK00458 S-adenosylmethionine 24.4 57 0.0012 21.5 1.7 13 9-21 78-90 (127)
18 PF11939 DUF3457: Protein of u 24.4 54 0.0012 22.4 1.6 13 38-50 99-112 (155)
19 PRK01236 S-adenosylmethionine 23.6 62 0.0013 21.5 1.8 14 9-22 67-80 (131)
20 PRK04025 S-adenosylmethionine 22.4 67 0.0015 21.6 1.8 13 9-21 66-78 (139)
21 PRK10465 hydrogenase 2-specifi 21.2 62 0.0014 22.6 1.5 31 13-50 87-120 (159)
22 PRK02770 S-adenosylmethionine 20.8 73 0.0016 21.4 1.7 14 9-22 79-92 (139)
23 PRK08849 2-octaprenyl-3-methyl 20.2 59 0.0013 23.5 1.2 22 9-30 202-223 (384)
No 1
>KOG2614|consensus
Probab=98.82 E-value=1.2e-09 Score=84.52 Aligned_cols=57 Identities=33% Similarity=0.476 Sum_probs=52.5
Q ss_pred CcCCCCCeeeeecCCCeeEEeccCCCCCccccCcCceEEEEeCcc-ccccC-ChhHHhcccccCCC
Q psy12263 2 DFQMDPNFLHIWPRGTFMMIALPNQDLSKRTFQTNTSCCRYMKFK-LKCLK-LENEILSIFPSSPP 65 (65)
Q Consensus 2 ~~~~~pn~LHIWPrg~fmliAlPN~DgSf~~~~~~~T~tLF~P~~-f~~L~-~~~~i~~fF~~~fP 65 (65)
.|++.+|++|+|||+.++++|+.|.|+|+ |+|.|+|++ ++.++ ...++.+||.++||
T Consensus 198 vf~~~~~~~~~~~~~~~~~~~y~~~~k~~-------t~t~~~~~~e~~~l~~~~~~v~~~~~en~~ 256 (420)
T KOG2614|consen 198 VFAIYGNGLHSWPRPGFHLIAYWFLDKSL-------TSTDFAPFDEPEKLKKTSLEVVDFFPENFP 256 (420)
T ss_pred eecccCCeEEEcccCCceEEEEEeecCCc-------ccccccCcCCHHHHhhhHHHHHHHhHHhHH
Confidence 58899999999999999999999999999 999999998 99986 56889999988875
No 2
>PF07151 DUF1391: Protein of unknown function (DUF1391); InterPro: IPR009821 This family consists of several Enterobacterial proteins of around 50 residues in length. Members of this family are found in Escherichia coli and Salmonella typhi where they are often known as YdfA. The function of this family is unknown.
Probab=77.83 E-value=1.9 Score=24.96 Aligned_cols=35 Identities=26% Similarity=0.278 Sum_probs=21.5
Q ss_pred eeEEeccCCCCCccccCcCceEEEEeCccccccCChhHHhcccc
Q psy12263 18 FMMIALPNQDLSKRTFQTNTSCCRYMKFKLKCLKLENEILSIFP 61 (65)
Q Consensus 18 fmliAlPN~DgSf~~~~~~~T~tLF~P~~f~~L~~~~~i~~fF~ 61 (65)
..+--.||.||.| |.--+-.. ++.|++.-...+..
T Consensus 11 lv~gvfpn~dgtf-------tamtytks--ktfkte~garrwl~ 45 (49)
T PF07151_consen 11 LVCGVFPNQDGTF-------TAMTYTKS--KTFKTESGARRWLA 45 (49)
T ss_pred eEEeEeeCCCCcE-------EEEEEeec--ceeecchhhhHHHh
Confidence 4455689999999 88665544 33344544444433
No 3
>COG2088 SpoVG Uncharacterized protein, involved in the regulation of septum location [Cell envelope biogenesis, outer membrane]
Probab=50.90 E-value=10 Score=24.69 Aligned_cols=19 Identities=21% Similarity=0.328 Sum_probs=14.4
Q ss_pred CCCeeEEeccC---CCCCcccc
Q psy12263 15 RGTFMMIALPN---QDLSKRTF 33 (65)
Q Consensus 15 rg~fmliAlPN---~DgSf~~~ 33 (65)
+.+-+++|+|+ +||+|||-
T Consensus 39 G~~GlfVAMPSrrt~dgEFrDI 60 (95)
T COG2088 39 GNNGLFVAMPSRRTPDGEFRDI 60 (95)
T ss_pred CCcceEEEccCccCCCcchhhc
Confidence 44568999998 58999554
No 4
>PLN02985 squalene monooxygenase
Probab=50.75 E-value=28 Score=27.13 Aligned_cols=37 Identities=11% Similarity=0.127 Sum_probs=25.1
Q ss_pred CCCeeeeecCCCeeEEeccCCCCCccccCcCceEEEEeCcc-ccc
Q psy12263 6 DPNFLHIWPRGTFMMIALPNQDLSKRTFQTNTSCCRYMKFK-LKC 49 (65)
Q Consensus 6 ~pn~LHIWPrg~fmliAlPN~DgSf~~~~~~~T~tLF~P~~-f~~ 49 (65)
.|++.|+|-...-+++..|..++.. .+....|.+ ..+
T Consensus 237 ~~~~~~~~~~~~~~~l~ypi~~~~~-------~~~~~~~~~~~~~ 274 (514)
T PLN02985 237 EPEKLHLIMSKPSFTMLYQISSTDV-------RCVFEVLPDNIPS 274 (514)
T ss_pred CCCcceEEcCCCceEEEEEeCCCeE-------EEEEEEeCCCCCC
Confidence 5788899965554555556677777 777777764 443
No 5
>PF08350 DUF1724: Domain of unknown function (DUF1724); InterPro: IPR013561 This domain of unknown function has so far only been found at the C terminus of archaean proteins, including several transcriptional regulators of the ArsR family (see IPR001845 from INTERPRO).
Probab=42.61 E-value=20 Score=20.93 Aligned_cols=15 Identities=33% Similarity=0.390 Sum_probs=13.7
Q ss_pred CCeeEEeccCCCCCc
Q psy12263 16 GTFMMIALPNQDLSK 30 (65)
Q Consensus 16 g~fmliAlPN~DgSf 30 (65)
.+||.+.|.++||.|
T Consensus 20 D~f~~l~Lf~~~G~y 34 (64)
T PF08350_consen 20 DKFMSLSLFNKDGRY 34 (64)
T ss_pred cCeEEEEEEcCCCcC
Confidence 578999999999999
No 6
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=38.40 E-value=44 Score=20.29 Aligned_cols=23 Identities=13% Similarity=0.016 Sum_probs=17.6
Q ss_pred CeeeeecCCCeeEEeccCCCCCc
Q psy12263 8 NFLHIWPRGTFMMIALPNQDLSK 30 (65)
Q Consensus 8 n~LHIWPrg~fmliAlPN~DgSf 30 (65)
.+++|||++..+.-+.-..+-.|
T Consensus 1 ~~i~l~~~~~~~~~~~~~~~~~l 23 (101)
T cd05859 1 GFIALKPTFGQLEFANLHEVKEF 23 (101)
T ss_pred CceEEecCCCceEEEecCCcEEE
Confidence 37899999998777766666666
No 7
>PRK06126 hypothetical protein; Provisional
Probab=33.28 E-value=93 Score=23.74 Aligned_cols=24 Identities=13% Similarity=0.119 Sum_probs=15.7
Q ss_pred CCCeeeee--cCCCeeEEeccCCCCCc
Q psy12263 6 DPNFLHIW--PRGTFMMIALPNQDLSK 30 (65)
Q Consensus 6 ~pn~LHIW--Prg~fmliAlPN~DgSf 30 (65)
.+..+|+| |+ ..++++..+.++++
T Consensus 224 ~~~~~~~~~~p~-~~~~~~~~~~~~~~ 249 (545)
T PRK06126 224 DPAWMYWLFNPD-RRGVLVAIDGRDEW 249 (545)
T ss_pred CCceEEEEECCC-ccEEEEEECCCCeE
Confidence 34556766 55 45666677778888
No 8
>PF14353 CpXC: CpXC protein
Probab=30.27 E-value=65 Score=20.25 Aligned_cols=24 Identities=25% Similarity=0.509 Sum_probs=21.8
Q ss_pred CcCCCCCeeeeecCCCeeEEeccC
Q psy12263 2 DFQMDPNFLHIWPRGTFMMIALPN 25 (65)
Q Consensus 2 ~~~~~pn~LHIWPrg~fmliAlPN 25 (65)
.++++-..|-+||...+|+...|+
T Consensus 47 ~~~~~~p~lY~D~~~~~~i~~~P~ 70 (128)
T PF14353_consen 47 KFRLEYPLLYHDPEKKFMIYYFPD 70 (128)
T ss_pred ceecCCCEEEEcCCCCEEEEEcCC
Confidence 367888999999999999999999
No 9
>PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=28.85 E-value=27 Score=20.66 Aligned_cols=7 Identities=43% Similarity=1.180 Sum_probs=5.1
Q ss_pred eeeecCC
Q psy12263 10 LHIWPRG 16 (65)
Q Consensus 10 LHIWPrg 16 (65)
||+|+.+
T Consensus 1 LhvWg~~ 7 (72)
T PF10568_consen 1 LHVWGGD 7 (72)
T ss_pred CeEeCCC
Confidence 6888665
No 10
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=28.04 E-value=71 Score=20.59 Aligned_cols=27 Identities=15% Similarity=0.098 Sum_probs=16.3
Q ss_pred CCCCCeeeeecCCCeeEEe---ccCCCCCc
Q psy12263 4 QMDPNFLHIWPRGTFMMIA---LPNQDLSK 30 (65)
Q Consensus 4 ~~~pn~LHIWPrg~fmliA---lPN~DgSf 30 (65)
+.-+..||+||.++-.-.. ..|++..-
T Consensus 112 ~~G~~~l~lW~~~~~~~~~~~~~~~~~~~~ 141 (156)
T cd08380 112 RQGMITLNLWPGKKTDPRIACTPCNNSNEN 141 (156)
T ss_pred ecCCEEEeccCCcccCcccccccCCCCCCC
Confidence 3446689999987754332 35555544
No 11
>PF01797 Y1_Tnp: Transposase IS200 like; InterPro: IPR002686 Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This entry represents a domain found in transposases for IS200 from Escherichia coli []. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated; PDB: 2F5G_B 2F4F_B 2EC2_F 2XM3_C 2XQC_D 2XO6_A 2XMA_E 2VJV_B 2VIH_B 2VJU_A ....
Probab=27.81 E-value=19 Score=21.69 Aligned_cols=20 Identities=30% Similarity=0.750 Sum_probs=11.8
Q ss_pred cCCCCCeeeeecCCCeeEEeccCCCCCc
Q psy12263 3 FQMDPNFLHIWPRGTFMMIALPNQDLSK 30 (65)
Q Consensus 3 ~~~~pn~LHIWPrg~fmliAlPN~DgSf 30 (65)
+.++|||+|+ ++.+|... +.
T Consensus 45 ~~vm~nHvHl-------lv~~~~~~-~i 64 (121)
T PF01797_consen 45 FVVMPNHVHL-------LVSIPPKQ-SI 64 (121)
T ss_dssp EEEETTEEEE-------EEEE-TTS--H
T ss_pred ecccCcccce-------eeeecccc-cc
Confidence 5678999994 55555433 44
No 12
>TIGR03330 SAM_DCase_Bsu S-adenosylmethionine decarboxylase proenzyme, Bacillus form. Members of this protein family are the single chain precursor of the two chains of the mature S-adenosylmethionine decarboxylase as found in Methanocaldococcus jannaschii, Bacillus subtilis, and a wide range of other species. It differs substantially in architecture from the form as found in Escherichia coli, and lacks any extended homology to the eukaryotic form (TIGR00535).
Probab=27.39 E-value=48 Score=21.14 Aligned_cols=13 Identities=23% Similarity=0.751 Sum_probs=10.2
Q ss_pred eeeeecCCCeeEE
Q psy12263 9 FLHIWPRGTFMMI 21 (65)
Q Consensus 9 ~LHIWPrg~fmli 21 (65)
.+|.||...+.-|
T Consensus 65 siHTwPE~gyaav 77 (112)
T TIGR03330 65 SIHTWPEYGYAAV 77 (112)
T ss_pred EEEeccCCCcEEE
Confidence 5899999887554
No 13
>PF02675 AdoMet_dc: S-adenosylmethionine decarboxylase ; InterPro: IPR003826 Polyamines such as spermidine and spermine are essential for cellular growth under most conditions, being implicated in a large number of cellular processes including DNA, RNA and protein synthesis. S-adenosylmethionine decarboxylase (AdoMetDC) plays an essential regulatory role in the polyamine biosynthetic pathway by generating the n-propylamine residue required for the synthesis of spermidine and spermine from putrescein [, ]. Unlike many amino acid decarboxylases AdoMetDC uses a covalently bound pyruvate residue as a cofactor rather than the more common pyridoxal 5'-phosphate. These proteins can be divided into two main groups which show little sequence similarity either to each other, or to other pyruvoyl-dependent amino acid decarboxylases: class I enzymes found in bacteria and archaea, and class II enzymes found in eukaryotes. In both groups the active enzyme is generated by the post-translational autocatalytic cleavage of a precursor protein. This cleavage generates the pyruvate precursor from an internal serine residue and results in the formation of two non-identical subunits termed alpha and beta which form the active enzyme. Members of this family are related to the amino terminus of Escherichia coli S-adenosylmethionine decarboxylase.; GO: 0004014 adenosylmethionine decarboxylase activity, 0008295 spermidine biosynthetic process; PDB: 1VR7_A 3IWC_D 3IWD_D 3IWB_C 1TMI_A 1TLU_A 2III_A.
Probab=26.42 E-value=46 Score=20.61 Aligned_cols=14 Identities=21% Similarity=0.752 Sum_probs=10.6
Q ss_pred eeeeecCCCeeEEe
Q psy12263 9 FLHIWPRGTFMMIA 22 (65)
Q Consensus 9 ~LHIWPrg~fmliA 22 (65)
.+|.||...+.-|=
T Consensus 60 siHTwPE~~~~avD 73 (106)
T PF02675_consen 60 SIHTWPEHGYAAVD 73 (106)
T ss_dssp EEEEEGGGTEEEEE
T ss_pred EEEeCCCcCeEEEE
Confidence 48999998866553
No 14
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=26.31 E-value=81 Score=21.35 Aligned_cols=26 Identities=12% Similarity=0.152 Sum_probs=17.3
Q ss_pred CCCCeeeeecCCCe--------eEEeccCCCCCc
Q psy12263 5 MDPNFLHIWPRGTF--------MMIALPNQDLSK 30 (65)
Q Consensus 5 ~~pn~LHIWPrg~f--------mliAlPN~DgSf 30 (65)
--+..||+||..+- +.....|++..-
T Consensus 126 ~G~~~L~lW~~~~~~~~~~~nP~gt~~~Np~~~~ 159 (173)
T cd08693 126 TGDHTLYMWTYAEDQSEDLLNPLGTVESNPNTES 159 (173)
T ss_pred cCCeEEEecCCCccccccccCCCccCcCCCCCCC
Confidence 34678999997443 555666776665
No 15
>PRK03124 S-adenosylmethionine decarboxylase proenzyme; Provisional
Probab=25.80 E-value=53 Score=21.61 Aligned_cols=13 Identities=23% Similarity=0.756 Sum_probs=10.3
Q ss_pred eeeeecCCCeeEE
Q psy12263 9 FLHIWPRGTFMMI 21 (65)
Q Consensus 9 ~LHIWPrg~fmli 21 (65)
.+|.||...+.-|
T Consensus 66 sIHTwPE~gyaav 78 (127)
T PRK03124 66 TIHTWPELGYAAV 78 (127)
T ss_pred EEEeCccCCeEEE
Confidence 5899999887554
No 16
>PRK01706 S-adenosylmethionine decarboxylase proenzyme; Validated
Probab=25.14 E-value=55 Score=21.42 Aligned_cols=13 Identities=31% Similarity=0.680 Sum_probs=10.3
Q ss_pred eeeeecCCCeeEE
Q psy12263 9 FLHIWPRGTFMMI 21 (65)
Q Consensus 9 ~LHIWPrg~fmli 21 (65)
.+|.||...+.-|
T Consensus 68 sIHTwPE~gyaav 80 (123)
T PRK01706 68 SIHTYPEKNFAAI 80 (123)
T ss_pred EEEeCccCCeEEE
Confidence 5899999887554
No 17
>PRK00458 S-adenosylmethionine decarboxylase proenzyme; Provisional
Probab=24.44 E-value=57 Score=21.46 Aligned_cols=13 Identities=31% Similarity=0.856 Sum_probs=10.4
Q ss_pred eeeeecCCCeeEE
Q psy12263 9 FLHIWPRGTFMMI 21 (65)
Q Consensus 9 ~LHIWPrg~fmli 21 (65)
.+|.||...+.-|
T Consensus 78 sIHTwPE~gyaav 90 (127)
T PRK00458 78 AIHTWPEYNFATV 90 (127)
T ss_pred EEEeCcCCCcEEE
Confidence 5899999887655
No 18
>PF11939 DUF3457: Protein of unknown function (DUF3457); InterPro: IPR023994 Members of this family are chaperones for the assembly of [NiFe] hydrogenases, in the family of HybE, which is specific for hydrogenase-2 of Escherichia coli. Members often have an additional N-terminal rubredoxin domain. ; PDB: 2KC5_A.
Probab=24.38 E-value=54 Score=22.38 Aligned_cols=13 Identities=15% Similarity=0.350 Sum_probs=5.9
Q ss_pred eEEEEeCcc-cccc
Q psy12263 38 SCCRYMKFK-LKCL 50 (65)
Q Consensus 38 T~tLF~P~~-f~~L 50 (65)
+|+||-|.+ |++-
T Consensus 99 sCSLfSPm~~f~~~ 112 (155)
T PF11939_consen 99 SCSLFSPMDEFADQ 112 (155)
T ss_dssp EEEEE----TT--H
T ss_pred EeeccCCCccccCH
Confidence 999999987 7653
No 19
>PRK01236 S-adenosylmethionine decarboxylase proenzyme; Provisional
Probab=23.56 E-value=62 Score=21.49 Aligned_cols=14 Identities=21% Similarity=0.667 Sum_probs=10.8
Q ss_pred eeeeecCCCeeEEe
Q psy12263 9 FLHIWPRGTFMMIA 22 (65)
Q Consensus 9 ~LHIWPrg~fmliA 22 (65)
.+|.||...+.-|=
T Consensus 67 sIHTwPE~gyaavD 80 (131)
T PRK01236 67 SIHTWPEYGLVTLD 80 (131)
T ss_pred EEEeCccCCeEEEE
Confidence 58999998876553
No 20
>PRK04025 S-adenosylmethionine decarboxylase proenzyme; Validated
Probab=22.43 E-value=67 Score=21.57 Aligned_cols=13 Identities=23% Similarity=0.792 Sum_probs=10.2
Q ss_pred eeeeecCCCeeEE
Q psy12263 9 FLHIWPRGTFMMI 21 (65)
Q Consensus 9 ~LHIWPrg~fmli 21 (65)
.+|.||...+.-|
T Consensus 66 sIHTwPE~gyaav 78 (139)
T PRK04025 66 SVHTWPEKGYAAL 78 (139)
T ss_pred EEEecccCCeEEE
Confidence 5899999887544
No 21
>PRK10465 hydrogenase 2-specific chaperone; Provisional
Probab=21.21 E-value=62 Score=22.59 Aligned_cols=31 Identities=19% Similarity=0.216 Sum_probs=18.9
Q ss_pred ecCCCeeEE--eccCCCCCccccCcCceEEEEeCcc-cccc
Q psy12263 13 WPRGTFMMI--ALPNQDLSKRTFQTNTSCCRYMKFK-LKCL 50 (65)
Q Consensus 13 WPrg~fmli--AlPN~DgSf~~~~~~~T~tLF~P~~-f~~L 50 (65)
-|.|++-+| -++.-.+.. +|+||-|.+ |.+-
T Consensus 87 lP~G~~~F~~~~~~~~G~y~-------sCSLfSPm~~f~~~ 120 (159)
T PRK10465 87 LPYGTMTFTVGELDGVSQYL-------SCSLMSPLDPSLSA 120 (159)
T ss_pred cCCceEEEEeecCCCCccee-------EeeccCCcccccCH
Confidence 355553333 244444555 999999997 7653
No 22
>PRK02770 S-adenosylmethionine decarboxylase proenzyme; Provisional
Probab=20.84 E-value=73 Score=21.38 Aligned_cols=14 Identities=21% Similarity=0.795 Sum_probs=10.8
Q ss_pred eeeeecCCCeeEEe
Q psy12263 9 FLHIWPRGTFMMIA 22 (65)
Q Consensus 9 ~LHIWPrg~fmliA 22 (65)
.+|.||...+.-|=
T Consensus 79 sIHTwPE~gyaavD 92 (139)
T PRK02770 79 SIHTWPESGYAAVD 92 (139)
T ss_pred EEEeCcCCCcEEEE
Confidence 58999998876543
No 23
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=20.18 E-value=59 Score=23.47 Aligned_cols=22 Identities=18% Similarity=0.206 Sum_probs=15.4
Q ss_pred eeeeecCCCeeEEeccCCCCCc
Q psy12263 9 FLHIWPRGTFMMIALPNQDLSK 30 (65)
Q Consensus 9 ~LHIWPrg~fmliAlPN~DgSf 30 (65)
+-|+||.|..+++.+|+.+++.
T Consensus 202 ~~~~~~~g~~~~~pl~~~~~~~ 223 (384)
T PRK08849 202 WQQFTPSGPRSFLPLCGNQGSL 223 (384)
T ss_pred EEEeCCCCCEEEeEcCCCceEE
Confidence 3457899999888777654433
Done!