Query psy12263
Match_columns 65
No_of_seqs 117 out of 255
Neff 4.1
Searched_HMMs 29240
Date Fri Aug 16 22:54:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12263.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12263hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4er8_A Tnparep for protein; pr 48.3 9.2 0.00031 24.6 1.9 21 3-30 53-73 (165)
2 2kc5_A Hydrogenase-2 operon pr 28.1 37 0.0013 22.6 2.4 34 16-49 80-119 (162)
3 2f5g_A Transposase, putative; 24.4 15 0.00052 21.9 -0.1 10 3-12 54-63 (133)
4 3usa_D HLA class II histocompa 22.5 45 0.0015 21.9 1.9 12 22-33 144-155 (189)
5 4gup_A Major histocompatibilit 21.2 38 0.0013 23.2 1.4 11 22-32 231-241 (271)
6 3cm1_A SSGA-like sporulation-s 19.8 56 0.0019 21.1 1.9 21 10-30 75-99 (139)
7 3md1_A Nuclear and cytoplasmic 19.0 68 0.0023 16.7 1.9 25 38-63 1-25 (83)
8 2iii_A S-adenosylmethionine de 17.9 53 0.0018 20.8 1.5 13 9-21 67-79 (135)
9 1w7d_A Fasciclin-like protein; 17.7 66 0.0023 19.3 1.8 14 38-51 36-51 (137)
10 2fyx_A Transposase, putative; 17.3 33 0.0011 20.9 0.4 10 3-12 64-73 (143)
No 1
>4er8_A Tnparep for protein; protein-DNA complex, guide sequence, catalytic tyrosine, RNA recognition motif, transposase, HUH motif, DNA binding PROT complex; HET: DNA; 2.60A {Escherichia coli}
Probab=48.27 E-value=9.2 Score=24.56 Aligned_cols=21 Identities=24% Similarity=0.422 Sum_probs=15.1
Q ss_pred cCCCCCeeeeecCCCeeEEeccCCCCCc
Q psy12263 3 FQMDPNFLHIWPRGTFMMIALPNQDLSK 30 (65)
Q Consensus 3 ~~~~pn~LHIWPrg~fmliAlPN~DgSf 30 (65)
|-+.|||+|+ ++.+|..+.++
T Consensus 53 ~vlMpNH~Hl-------l~~~p~~~~~l 73 (165)
T 4er8_A 53 WVVLPEHMHC-------IWTLPEGDDDF 73 (165)
T ss_dssp EEECSSEEEE-------EEECCTTCCCH
T ss_pred EEEcCCceEE-------EEEeCCcchhH
Confidence 6689999995 55666666665
No 2
>2kc5_A Hydrogenase-2 operon protein HYBE; chaperone; NMR {Escherichia coli}
Probab=28.10 E-value=37 Score=22.64 Aligned_cols=34 Identities=12% Similarity=0.130 Sum_probs=19.1
Q ss_pred CCeeEEeccCCCCCc-----cccCcCceEEEEeCcc-ccc
Q psy12263 16 GTFMMIALPNQDLSK-----RTFQTNTSCCRYMKFK-LKC 49 (65)
Q Consensus 16 g~fmliAlPN~DgSf-----~~~~~~~T~tLF~P~~-f~~ 49 (65)
|+-..+++|..+-.| ..+-.-.+|+||-|.+ |.+
T Consensus 80 G~k~~l~lP~G~~~F~~~~~~~~G~y~sCSLfSPm~~f~~ 119 (162)
T 2kc5_A 80 SEKIGLQLPYGTMTFTVGELDGVSQYLSCSLMSPLSHSMS 119 (162)
T ss_dssp TCEEEECCTTCCEEEEEEEETTTEEEEEEEEECCCCTTCC
T ss_pred CceEEEEcCCccEEEEeecCCCCcceeEccccCCcccccC
Confidence 445555555544333 1111123999999997 765
No 3
>2f5g_A Transposase, putative; dimer, stem-loop binding, gene regulation; 1.70A {Sulfolobus solfataricus} SCOP: d.58.57.1 PDB: 2f4f_A 2ec2_A
Probab=24.43 E-value=15 Score=21.86 Aligned_cols=10 Identities=20% Similarity=0.786 Sum_probs=7.5
Q ss_pred cCCCCCeeee
Q psy12263 3 FQMDPNFLHI 12 (65)
Q Consensus 3 ~~~~pn~LHI 12 (65)
|.++|||+|+
T Consensus 54 ~~impdHvHl 63 (133)
T 2f5g_A 54 LEVMPDHIHL 63 (133)
T ss_dssp EEEETTEEEE
T ss_pred eeecCCcEEE
Confidence 4577888885
No 4
>3usa_D HLA class II histocompatibility antigen, DO beta; MHC class II fold, antigen presentation enzyme and inhibitor system; HET: NAG MAN PGE; 3.20A {Homo sapiens}
Probab=22.54 E-value=45 Score=21.94 Aligned_cols=12 Identities=25% Similarity=0.315 Sum_probs=9.5
Q ss_pred eccCCCCCcccc
Q psy12263 22 ALPNQDLSKRTF 33 (65)
Q Consensus 22 AlPN~DgSf~~~ 33 (65)
.+||.||+||..
T Consensus 144 ~~pn~DgTfq~~ 155 (189)
T 3usa_D 144 PIRNGDWTFQTV 155 (189)
T ss_dssp CEECSSSCEEEE
T ss_pred cEECCCCeEEEE
Confidence 579999999554
No 5
>4gup_A Major histocompatibility complex class I-related protein; MHC class I-related protein, immune system; HET: 6FP; 3.20A {Homo sapiens}
Probab=21.23 E-value=38 Score=23.21 Aligned_cols=11 Identities=27% Similarity=0.380 Sum_probs=9.1
Q ss_pred eccCCCCCccc
Q psy12263 22 ALPNQDLSKRT 32 (65)
Q Consensus 22 AlPN~DgSf~~ 32 (65)
-+||.||+||+
T Consensus 231 ~~pn~Dgt~q~ 241 (271)
T 4gup_A 231 ILPSGDGTYQA 241 (271)
T ss_dssp CEECSSSCEEE
T ss_pred cEECCCCCEEE
Confidence 47999999954
No 6
>3cm1_A SSGA-like sporulation-specific cell division PROT; YP_290167.1; 2.60A {Thermobifida fusca}
Probab=19.85 E-value=56 Score=21.10 Aligned_cols=21 Identities=29% Similarity=0.479 Sum_probs=17.5
Q ss_pred eeeecC---C-CeeEEeccCCCCCc
Q psy12263 10 LHIWPR---G-TFMMIALPNQDLSK 30 (65)
Q Consensus 10 LHIWPr---g-~fmliAlPN~DgSf 30 (65)
.+|||. | .-..|+|-.++|.-
T Consensus 75 VrV~P~~~~g~~~~~leL~sp~G~A 99 (139)
T 3cm1_A 75 VRIWPSQDGKERMVNIALSSPFGQA 99 (139)
T ss_dssp EEEEEEEETTEEEEEEEECCTTCCE
T ss_pred EEEEecCCCCccEEEEEEeCCCceE
Confidence 689995 3 57999999999965
No 7
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=19.00 E-value=68 Score=16.65 Aligned_cols=25 Identities=8% Similarity=0.032 Sum_probs=13.7
Q ss_pred eEEEEeCccccccCChhHHhcccccC
Q psy12263 38 SCCRYMKFKLKCLKLENEILSIFPSS 63 (65)
Q Consensus 38 T~tLF~P~~f~~L~~~~~i~~fF~~~ 63 (65)
|++||.-. +..--++++|.++|.++
T Consensus 1 t~~l~V~n-lp~~~t~~~l~~~f~~~ 25 (83)
T 3md1_A 1 TFNLFVGD-LNVNVDDETLRNAFKDF 25 (83)
T ss_dssp CEEEEEEC-CCTTCCHHHHHHHHTTS
T ss_pred CeEEEEeC-CCCCCCHHHHHHHHHhc
Confidence 34555521 22224577888888654
No 8
>2iii_A S-adenosylmethionine decarboxylase proenzyme; two-layer alpha beta-sandwich, structural genomics, NPPSFA; 2.30A {Aquifex aeolicus}
Probab=17.92 E-value=53 Score=20.85 Aligned_cols=13 Identities=23% Similarity=0.741 Sum_probs=10.3
Q ss_pred eeeeecCCCeeEE
Q psy12263 9 FLHIWPRGTFMMI 21 (65)
Q Consensus 9 ~LHIWPrg~fmli 21 (65)
.+|.||...+.-|
T Consensus 67 sIHTwPE~gyaav 79 (135)
T 2iii_A 67 SIHTWPEHGLATV 79 (135)
T ss_dssp EEEEEGGGTEEEE
T ss_pred EEEeCCCCCcEEE
Confidence 4899999997544
No 9
>1w7d_A Fasciclin-like protein; cell adhesion; NMR {Rhodobacter sphaeroides} PDB: 1w7e_A
Probab=17.71 E-value=66 Score=19.31 Aligned_cols=14 Identities=7% Similarity=0.114 Sum_probs=11.4
Q ss_pred eEEEEeCcc--ccccC
Q psy12263 38 SCCRYMKFK--LKCLK 51 (65)
Q Consensus 38 T~tLF~P~~--f~~L~ 51 (65)
..|+|+|.+ |+.|.
T Consensus 36 ~~TvFAPtn~Af~~l~ 51 (137)
T 1w7d_A 36 PFTVFAPTDAAFAALP 51 (137)
T ss_dssp CEEEECCCHHHHTTST
T ss_pred CEEEEEECHHHHHHcC
Confidence 458999998 98874
No 10
>2fyx_A Transposase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.90A {Deinococcus radiodurans} SCOP: d.58.57.1 PDB: 2xqc_A 2xm3_A 2xma_A 2xo6_A
Probab=17.34 E-value=33 Score=20.93 Aligned_cols=10 Identities=20% Similarity=0.926 Sum_probs=7.9
Q ss_pred cCCCCCeeee
Q psy12263 3 FQMDPNFLHI 12 (65)
Q Consensus 3 ~~~~pn~LHI 12 (65)
|-++||++|+
T Consensus 64 ~~vmpDHvHl 73 (143)
T 2fyx_A 64 LEVMPDYVHL 73 (143)
T ss_dssp EEECSSEEEE
T ss_pred EEecCCeEEE
Confidence 5578999996
Done!