Query psy12263
Match_columns 65
No_of_seqs 117 out of 255
Neff 4.1
Searched_HMMs 13730
Date Fri Aug 16 22:54:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12263.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/12263hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vr7a1 d.156.1.2 (A:2-118) S- 32.5 9.1 0.00066 21.9 1.5 14 9-22 65-78 (117)
2 d1tdja2 d.58.18.2 (A:336-423) 30.2 11 0.00078 21.1 1.5 27 17-43 4-33 (88)
3 d2b5ea2 c.47.1.2 (A:142-239) P 29.3 28 0.0021 20.3 3.3 25 15-46 44-68 (98)
4 d2cq0a1 d.58.7.1 (A:231-320) E 29.2 33 0.0024 17.7 3.4 25 38-63 8-32 (90)
5 d1nezg_ b.1.1.1 (G:) CD8 {Mous 20.2 36 0.0026 18.7 2.5 23 9-41 3-25 (122)
6 d1fita_ d.13.1.1 (A:) FHIT (fr 19.6 12 0.00091 21.7 0.3 10 8-17 94-103 (146)
7 d1h2vz_ d.58.7.1 (Z:) CBP20, 2 18.2 21 0.0015 18.8 1.1 25 38-63 7-31 (93)
8 d1x5ua1 d.58.7.1 (A:7-99) Spli 15.7 29 0.0021 18.2 1.3 25 38-63 9-33 (93)
9 d1jlxa1 b.42.3.1 (A:1-153) Agg 15.0 16 0.0011 23.0 -0.1 11 36-46 91-101 (153)
10 d2ghpa1 d.58.7.1 (A:116-196) U 15.0 24 0.0018 17.7 0.8 24 39-63 2-25 (81)
No 1
>d1vr7a1 d.156.1.2 (A:2-118) S-adenosylmethionine decarboxylase (SamDC, SpeH) {Thermotoga maritima [TaxId: 2336]}
Probab=32.55 E-value=9.1 Score=21.88 Aligned_cols=14 Identities=29% Similarity=0.726 Sum_probs=10.8
Q ss_pred eeeeecCCCeeEEe
Q psy12263 9 FLHIWPRGTFMMIA 22 (65)
Q Consensus 9 ~LHIWPrg~fmliA 22 (65)
.+|.||...++.|=
T Consensus 65 siHTwPE~g~~~iD 78 (117)
T d1vr7a1 65 TIHTWPEYGYAAID 78 (117)
T ss_dssp EEEEEGGGTEEEEE
T ss_pred EEEEcCCCceEEEE
Confidence 48999998876653
No 2
>d1tdja2 d.58.18.2 (A:336-423) Allosteric threonine deaminase C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=30.24 E-value=11 Score=21.13 Aligned_cols=27 Identities=15% Similarity=0.299 Sum_probs=21.0
Q ss_pred CeeEEeccCCCCCccccCc---CceEEEEe
Q psy12263 17 TFMMIALPNQDLSKRTFQT---NTSCCRYM 43 (65)
Q Consensus 17 ~fmliAlPN~DgSf~~~~~---~~T~tLF~ 43 (65)
..+-+-+|-.-|||++|+- .+..|+|=
T Consensus 4 ~l~~v~iPErpGaf~~F~~~lg~~nITeF~ 33 (88)
T d1tdja2 4 ALLAVTIPEEKGSFLKFCQLLGGRSVTEFN 33 (88)
T ss_dssp EEEEEECCBSSSCSHHHHHTTSSSEEEEEE
T ss_pred EEEEEEcCCCccHHHHHHHhcCcCceEEEE
Confidence 4567889999999988854 66777774
No 3
>d2b5ea2 c.47.1.2 (A:142-239) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=29.26 E-value=28 Score=20.34 Aligned_cols=25 Identities=12% Similarity=0.109 Sum_probs=22.6
Q ss_pred CCCeeEEeccCCCCCccccCcCceEEEEeCcc
Q psy12263 15 RGTFMMIALPNQDLSKRTFQTNTSCCRYMKFK 46 (65)
Q Consensus 15 rg~fmliAlPN~DgSf~~~~~~~T~tLF~P~~ 46 (65)
|.+|.+|.+|+.+... .-.+++|.+
T Consensus 44 ~~Dy~Fvs~~~~~~~~-------kLsV~LP~e 68 (98)
T d2b5ea2 44 FNDYDFVSAENADDDF-------KLSIYLPSA 68 (98)
T ss_dssp TTTCEEEEEECTTSCC-------EEEEEETTE
T ss_pred hcceEEEeccCCCCCc-------cEEEECCCC
Confidence 6789999999999888 899999985
No 4
>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.22 E-value=33 Score=17.71 Aligned_cols=25 Identities=12% Similarity=0.069 Sum_probs=15.9
Q ss_pred eEEEEeCccccccCChhHHhcccccC
Q psy12263 38 SCCRYMKFKLKCLKLENEILSIFPSS 63 (65)
Q Consensus 38 T~tLF~P~~f~~L~~~~~i~~fF~~~ 63 (65)
++|||.-. +..--++++|.++|.+.
T Consensus 8 ~~~i~V~n-Lp~~~t~~~l~~~f~~~ 32 (90)
T d2cq0a1 8 NATIRVTN-LSEDTRETDLQELFRPF 32 (90)
T ss_dssp SEEEEEES-CCTTCCHHHHHTTSTTT
T ss_pred CCEEEEEC-CCCCCCHHHHHHHHHHh
Confidence 66777621 33335678899888763
No 5
>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=20.18 E-value=36 Score=18.66 Aligned_cols=23 Identities=30% Similarity=0.358 Sum_probs=18.3
Q ss_pred eeeeecCCCeeEEeccCCCCCccccCcCceEEE
Q psy12263 9 FLHIWPRGTFMMIALPNQDLSKRTFQTNTSCCR 41 (65)
Q Consensus 9 ~LHIWPrg~fmliAlPN~DgSf~~~~~~~T~tL 41 (65)
-||++|+. +++.+..+-.+ +|.+
T Consensus 3 ~~~~~P~~---~~~~~G~~vtL-------~C~~ 25 (122)
T d1nezg_ 3 ELRIFPKK---MDAELGQKVDL-------VCEV 25 (122)
T ss_dssp EEEEESSC---EEECTTCCEEE-------EEEE
T ss_pred ceEEcCCE---EEECCCCCEEE-------EEEE
Confidence 48999997 67888888888 7765
No 6
>d1fita_ d.13.1.1 (A:) FHIT (fragile histidine triad protein) {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.64 E-value=12 Score=21.66 Aligned_cols=10 Identities=30% Similarity=0.657 Sum_probs=7.5
Q ss_pred CeeeeecCCC
Q psy12263 8 NFLHIWPRGT 17 (65)
Q Consensus 8 n~LHIWPrg~ 17 (65)
=|+||.||-.
T Consensus 94 lH~HiiPR~~ 103 (146)
T d1fita_ 94 VHVHVLPRKA 103 (146)
T ss_dssp CCEEEEEECT
T ss_pred EEEEEecCcC
Confidence 3789999854
No 7
>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.19 E-value=21 Score=18.77 Aligned_cols=25 Identities=32% Similarity=0.550 Sum_probs=16.2
Q ss_pred eEEEEeCccccccCChhHHhcccccC
Q psy12263 38 SCCRYMKFKLKCLKLENEILSIFPSS 63 (65)
Q Consensus 38 T~tLF~P~~f~~L~~~~~i~~fF~~~ 63 (65)
+||||.-. ...--++++|.++|.+.
T Consensus 7 s~tlfV~n-lp~~~te~~l~~~F~~~ 31 (93)
T d1h2vz_ 7 SCTLYVGN-LSFYTTEEQIYELFSKS 31 (93)
T ss_dssp CCEEEEES-CCTTCCHHHHHHHHGGG
T ss_pred CCEEEEeC-CCCCCCHHHHHHHHHHH
Confidence 67888722 22224678899888763
No 8
>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.73 E-value=29 Score=18.15 Aligned_cols=25 Identities=16% Similarity=0.111 Sum_probs=15.1
Q ss_pred eEEEEeCccccccCChhHHhcccccC
Q psy12263 38 SCCRYMKFKLKCLKLENEILSIFPSS 63 (65)
Q Consensus 38 T~tLF~P~~f~~L~~~~~i~~fF~~~ 63 (65)
.+|||+-. +..--++++|.++|.+.
T Consensus 9 ~~tlfV~n-Lp~~~t~~~l~~~F~~~ 33 (93)
T d1x5ua1 9 DATVYVGG-LDEKVSEPLLWELFLQA 33 (93)
T ss_dssp TTEEEEEC-CCTTCCHHHHHHHHHTT
T ss_pred CCEEEEeC-CCCcCCHHHHHHHHHHh
Confidence 45677621 33334678888888764
No 9
>d1jlxa1 b.42.3.1 (A:1-153) Agglutinin {Love-lies-bleeding (Amaranthus caudatus) [TaxId: 3567]}
Probab=14.97 E-value=16 Score=23.03 Aligned_cols=11 Identities=18% Similarity=0.401 Sum_probs=8.5
Q ss_pred CceEEEEeCcc
Q psy12263 36 NTSCCRYMKFK 46 (65)
Q Consensus 36 ~~T~tLF~P~~ 46 (65)
+|+||||-|-.
T Consensus 91 ~~scTLF~Pv~ 101 (153)
T d1jlxa1 91 NWACTLFKPLY 101 (153)
T ss_dssp STTCCCEEEEE
T ss_pred CCcceEEEEEE
Confidence 37999997764
No 10
>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=14.95 E-value=24 Score=17.74 Aligned_cols=24 Identities=13% Similarity=0.217 Sum_probs=13.2
Q ss_pred EEEEeCccccccCChhHHhcccccC
Q psy12263 39 CCRYMKFKLKCLKLENEILSIFPSS 63 (65)
Q Consensus 39 ~tLF~P~~f~~L~~~~~i~~fF~~~ 63 (65)
||||+-. ...=-++++|.++|.+.
T Consensus 2 ~tl~v~n-Lp~~~t~~~l~~~f~~~ 25 (81)
T d2ghpa1 2 CTLWMTN-FPPSYTQRNIRDLLQDI 25 (81)
T ss_dssp CEEEEEC-CCTTCCHHHHHHHHHHT
T ss_pred cEEEEEC-CCCcCCHHHHHHHHHHh
Confidence 4666511 22223567888888653
Done!