RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy12263
         (65 letters)



>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin,
           bacteroides F oxidoreductase; HET: FAD; 2.09A
           {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A*
           2y6r_A* 3p9u_A*
          Length = 398

 Score = 39.7 bits (93), Expect = 1e-05
 Identities = 5/26 (19%), Positives = 10/26 (38%)

Query: 2   DFQMDPNFLHIWPRGTFMMIALPNQD 27
            FQ+      +      ++ A PN +
Sbjct: 215 FFQLCNGNRLMASHQGNLLFANPNNN 240


>3zx6_A HAMP, methyl-accepting chemotaxis protein I; signaling, HAMP
          domain, TSR receptor, fusion; 2.65A {Archaeoglobus
          fulgidus}
          Length = 341

 Score = 28.1 bits (63), Expect = 0.15
 Identities = 10/18 (55%), Positives = 10/18 (55%)

Query: 21 IALPNQDLSKRTFQTNTS 38
          IA  N DLS RT Q   S
Sbjct: 71 IATGNNDLSSRTEQQAAS 88


>3rm2_H Thrombin heavy chain; serine protease, kringle, hydrolase, blood
           coagulation, BLOO clotting, convertion of fibrinogen to
           fibrin; HET: TYS NAG S00; 1.23A {Homo sapiens} PDB:
           1a2c_H* 1a3e_H* 1a46_H* 1a4w_H* 1a5g_H* 1a61_H* 1abi_H*
           1abj_H* 1ad8_H* 1ae8_H* 1afe_H* 1a3b_H* 1ai8_H* 1aix_H*
           1awf_H* 1awh_B* 1ay6_H* 1b5g_H* 1ba8_B* 1bb0_B* ...
          Length = 259

 Score = 25.7 bits (57), Expect = 1.1
 Identities = 5/29 (17%), Positives = 11/29 (37%), Gaps = 6/29 (20%)

Query: 11  HIWPRGTFMMIALPNQDLSKRTFQTNTSC 39
           +I P      + LP+++ +    Q     
Sbjct: 114 YIHP------VCLPDRETAASLLQAGYKG 136


>2bdy_A Thrombin; thrombin, complex structure, hydrolase,
           hydrolase-hydrolase complex; HET: TYS UNB; 1.61A {Homo
           sapiens} SCOP: b.47.1.2 PDB: 3k65_B 1doj_A* 1hag_E*
           1xm1_A* 1nu9_A* 3sqe_E 3sqh_E 1jwt_A* 1d9i_A* 1d6w_A*
           1g37_A* 1nm6_A* 1nt1_A* 1sl3_A* 1ta2_A* 1ta6_A* 1z71_A*
           1zgi_A* 1zgv_A* 1zrb_A* ...
          Length = 289

 Score = 25.4 bits (56), Expect = 1.5
 Identities = 5/29 (17%), Positives = 11/29 (37%), Gaps = 6/29 (20%)

Query: 11  HIWPRGTFMMIALPNQDLSKRTFQTNTSC 39
           +I P      + LP+++ +    Q     
Sbjct: 144 YIHP------VCLPDRETAASLLQAGYKG 166


>2jkh_A Activated factor XA heavy chain; plasma, calcium, zymogen,
           secreted, protease, hydrolase, polymorphism,
           glycoprotein, gamma-carboxyglutamic acid; HET: BI7;
           1.25A {Homo sapiens} PDB: 2bok_A* 2vvc_A* 2vvu_A*
           2vvv_A* 2vwl_A* 2vwm_A* 2vwn_A* 2vwo_A* 2xbv_A* 1c5m_D
           2vh0_A* 1ezq_A* 1f0s_A* 1ksn_A* 1f0r_A* 1lpk_B* 1lpz_B*
           1lqd_B* 1nfu_A* 1nfw_A* ...
          Length = 241

 Score = 24.9 bits (55), Expect = 2.0
 Identities = 6/29 (20%), Positives = 12/29 (41%), Gaps = 6/29 (20%)

Query: 11  HIWPRGTFMMIALPNQDLSKRTFQTNTSC 39
           ++ P        LP +D ++ T  T  + 
Sbjct: 103 NVAP------ACLPERDWAESTLMTQKTG 125


>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine
           protease, zymogen; HET: NAG; 2.20A {Homo sapiens}
          Length = 424

 Score = 24.4 bits (53), Expect = 3.2
 Identities = 5/29 (17%), Positives = 11/29 (37%), Gaps = 6/29 (20%)

Query: 11  HIWPRGTFMMIALPNQDLSKRTFQTNTSC 39
           +I P      + LP+++ +    Q     
Sbjct: 279 YIHP------VCLPDRETAASLLQAGYKG 301


>2bz6_H Blood coagulation factor VIIA; serine protease, enzyme complex,
           hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: b.47.1.2
           PDB: 1cvw_H* 1dva_H* 1fak_H* 1j9c_H* 1jbu_H 1dan_H
           1klj_H 1o5d_H* 1qfk_H* 1w0y_H* 1w2k_H* 1w7x_H* 1w8b_H*
           1wqv_H* 1wss_H* 1wtg_H* 1wun_H* 1wv7_H* 1ygc_H* 1z6j_H*
           ...
          Length = 254

 Score = 24.1 bits (53), Expect = 3.7
 Identities = 7/29 (24%), Positives = 11/29 (37%), Gaps = 6/29 (20%)

Query: 11  HIWPRGTFMMIALPNQDLSKRTFQTNTSC 39
           H+ P      + LP +  S+RT       
Sbjct: 105 HVVP------LCLPERTFSERTLAFVRFS 127


>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor
           complex, blood coagulation, CL PAIR of basic residues,
           disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A
           {Homo sapiens}
          Length = 317

 Score = 23.1 bits (50), Expect = 7.8
 Identities = 3/19 (15%), Positives = 7/19 (36%)

Query: 21  IALPNQDLSKRTFQTNTSC 39
           +  P +D ++      T  
Sbjct: 197 VCTPEKDFAEHLLIPRTRG 215


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.328    0.139    0.457 

Gapped
Lambda     K      H
   0.267   0.0682    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 909,238
Number of extensions: 34500
Number of successful extensions: 77
Number of sequences better than 10.0: 1
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 8
Length of query: 65
Length of database: 6,701,793
Length adjustment: 36
Effective length of query: 29
Effective length of database: 5,696,637
Effective search space: 165202473
Effective search space used: 165202473
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 51 (23.5 bits)