RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12263
         (65 letters)



>d2fa8a1 c.47.1.23 (A:4-89) Hypothetical protein Atu0228
          {Agrobacterium tumefaciens [TaxId: 358]}
          Length = 86

 Score = 22.3 bits (48), Expect = 5.1
 Identities = 7/24 (29%), Positives = 11/24 (45%), Gaps = 3/24 (12%)

Query: 40 CRYMKFKLKCLKLENEILSIFPSS 63
          C ++   L+   +  EIL  F S 
Sbjct: 13 CNWL---LRAGWMAQEILQTFASD 33


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.328    0.139    0.457 

Gapped
Lambda     K      H
   0.267   0.0712    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 239,792
Number of extensions: 7960
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 2
Length of query: 65
Length of database: 2,407,596
Length adjustment: 34
Effective length of query: 31
Effective length of database: 1,940,776
Effective search space: 60164056
Effective search space used: 60164056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 47 (21.9 bits)