RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12265
(71 letters)
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc
finger, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 57.1 bits (139), Expect = 3e-13
Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 7 LKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHS-DVKAFQCEYCGKDFARK 61
R H G KPY C +C F Q G +K H H+ +V F C +C ARK
Sbjct: 3 SGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARK 58
Score = 40.6 bits (96), Expect = 1e-06
Identities = 9/40 (22%), Positives = 14/40 (35%), Gaps = 2/40 (5%)
Query: 7 LKVHNRVHLG--LKPYGCEVCGRHFRQWGDLKYHKASLHS 44
+K+H + + C C + DL H HS
Sbjct: 31 MKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHS 70
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A
{Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB:
1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A*
1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 52.9 bits (128), Expect = 2e-11
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 6 YLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFAR 60
L H R+H G KP+ C +C R+F + L H H+ K F C+ CG+ FAR
Sbjct: 21 SLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI-RTHTGEKPFACDICGRKFAR 74
Score = 42.5 bits (101), Expect = 3e-07
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 6 YLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHK 39
+L H R H G KP+ C++CGR F + + K H
Sbjct: 49 HLTTHIRTHTGEKPFACDICGRKFARSDERKRHT 82
Score = 39.8 bits (94), Expect = 3e-06
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 18 KPYGCEV--CGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFAR 60
+PY C V C R F Q G L H +H+ K FQC C ++F+R
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHI-RIHTGQKPFQCRICMRNFSR 46
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex,
double helix, transcription/DNA complex; HET: DNA;
2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 52.2 bits (126), Expect = 2e-11
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 11 NRVHLGLKPYGCEVCGRHFRQWGDLKYHK-ASLHSDVKAFQCEYCGKDFARK 61
G Y C+VC R + + H S +VK + C +C K+F RK
Sbjct: 2 EFTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRK 53
Score = 33.7 bits (78), Expect = 4e-04
Identities = 7/35 (20%), Positives = 12/35 (34%), Gaps = 2/35 (5%)
Query: 7 LKVHNRV--HLGLKPYGCEVCGRHFRQWGDLKYHK 39
H +K Y C C + F + ++ H
Sbjct: 26 FCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHV 60
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 51.0 bits (123), Expect = 1e-10
Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
Query: 6 YLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKY--Q 63
+L H R H G KP+ C++CGR F + + K H+ + + + ++ Y +
Sbjct: 18 HLTTHIRTHTGEKPFACDICGRKFARSDERKRHR-DIQHI-LPILEDKVEELLSKNYHLE 75
Query: 64 AHSYHQ 69
Sbjct: 76 NEVARL 81
Score = 43.6 bits (104), Expect = 9e-08
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 17 LKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARK 61
+KP+ C +C R+F + L H H+ K F C+ CG+ FAR
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHI-RTHTGEKPFACDICGRKFARS 44
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 49.9 bits (120), Expect = 1e-10
Identities = 11/50 (22%), Positives = 20/50 (40%)
Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFA 59
KPY C+ CG+ F + L H +H+ + +C+ +
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPS 52
Score = 30.2 bits (69), Expect = 0.008
Identities = 7/26 (26%), Positives = 11/26 (42%), Gaps = 1/26 (3%)
Query: 7 LKVHN-RVHLGLKPYGCEVCGRHFRQ 31
L H +VH +P+ C+V
Sbjct: 28 LNGHIKQVHTSERPHKCQVWVSGPSS 53
Score = 26.0 bits (58), Expect = 0.41
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 41 SLHSDVKAFQCEYCGKDFARK 61
S S K + C+ CGK F+R
Sbjct: 5 SSGSVGKPYICQSCGKGFSRP 25
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 51.3 bits (124), Expect = 2e-10
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 5 TYLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYQA 64
+ H +HLGL+PYGC VCG+ F+ L H +H+ +K ++C C K F +
Sbjct: 23 SQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHM-KIHTGIKPYECNICAKRFMWRDSF 81
Query: 65 H 65
H
Sbjct: 82 H 82
Score = 45.1 bits (108), Expect = 4e-08
Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Query: 5 TYLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARK 61
+L H ++H G+KPY C +C + F H + S K+++ ++
Sbjct: 51 HHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRH---VTSCTKSYEAAKAEQNTTEA 104
Score = 42.4 bits (101), Expect = 4e-07
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 12 RVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARK 61
G K Y C+ CG+ F H S+H ++ + C CGK F K
Sbjct: 3 SGSSGDKLYPCQ-CGKSFTHKSQRDRHM-SMHLGLRPYGCGVCGKKFKMK 50
Score = 31.3 bits (72), Expect = 0.008
Identities = 4/26 (15%), Positives = 7/26 (26%)
Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDL 35
H V K Y ++ +
Sbjct: 82 HRHVTSCTKSYEAAKAEQNTTEASGP 107
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 50.1 bits (121), Expect = 2e-10
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 6 YLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARK 61
+ H+ + KPY C+ C FR G+L HK ++H+ K ++C CG F R
Sbjct: 4 HHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHK-TVHTGEKPYRCNICGAQFNRP 58
Score = 39.7 bits (94), Expect = 2e-06
Identities = 15/35 (42%), Positives = 18/35 (51%)
Query: 5 TYLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHK 39
L H VH G KPY C +CG F + +LK H
Sbjct: 31 GNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHT 65
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear
protein, DNA- binding, transcription, C2H2-type zinc
finger, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 50.1 bits (121), Expect = 3e-10
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 6 YLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARK 61
LK H R H G+KPY C+ C L H +HSD + F+C+ C
Sbjct: 23 KLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLR-IHSDERPFKCQICPYASRNS 77
Score = 42.4 bits (101), Expect = 3e-07
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 14 HLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARK 61
P+ CEVCG+ F + LK H H+ VK ++C+ C A
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTHM-RCHTGVKPYKCKTCDYAAADS 49
Score = 38.6 bits (91), Expect = 1e-05
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 6 YLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHK 39
L H R+H +P+ C++C R L H
Sbjct: 51 SLNKHLRIHSDERPFKCQICPYASRNSSQLTVHL 84
Score = 24.7 bits (55), Expect = 1.8
Identities = 6/18 (33%), Positives = 7/18 (38%)
Query: 5 TYLKVHNRVHLGLKPYGC 22
+ L VH R H G
Sbjct: 78 SQLTVHLRSHTGDSGPSS 95
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 49.7 bits (119), Expect = 3e-10
Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 3/56 (5%)
Query: 7 LKVHNRVH---LGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFA 59
L H R H + + CE CG+ F + + H++ H + E G
Sbjct: 23 LNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLLAPQESSGPSSG 78
Score = 48.9 bits (117), Expect = 6e-10
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 14 HLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDV---KAFQCEYCGKDFARK 61
G CE+CG RQ L +H+ H++ F CE+CGK F +
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQ-RKHAETVAALRFPCEFCGKRFEKP 51
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 50.5 bits (122), Expect = 3e-10
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 6 YLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARK 61
K + C+ CGRHF + +L H+ H+D + + C+ C K F R+
Sbjct: 4 GSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHE-RTHTDERPYTCDICHKAFRRQ 58
Score = 49.7 bits (120), Expect = 5e-10
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 5 TYLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARK 61
L +H R H +PY C++C + FR+ L+ H+ +HS K F+C+ CGK F +
Sbjct: 31 YNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHR-YIHSKEKPFKCQECGKGFCQS 86
Score = 37.8 bits (89), Expect = 2e-05
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 5 TYLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQC 51
+L+ H +H KP+ C+ CG+ F Q L HK +LH +
Sbjct: 59 DHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHK-TLHMQTSSPTA 104
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 50.2 bits (121), Expect = 3e-10
Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 5 TYLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHS--DVKAFQCEYCGKDFARK 61
+L H H G KPY C VCG F++ + YH H K + C+ CGK F+R
Sbjct: 21 YHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHV-RSHDGSVGKPYICQSCGKGFSRP 78
Score = 43.2 bits (103), Expect = 1e-07
Identities = 20/48 (41%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 14 HLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARK 61
G CE+CG+ FR L HK S HS K + C CG F RK
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLS-HSGEKPYSCPVCGLRFKRK 48
Score = 34.8 bits (81), Expect = 2e-04
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 6 YLKVHNRVHLG--LKPYGCEVCGRHFRQWGDLKYHKASLHS 44
+ H R H G KPY C+ CG+ F + L H +HS
Sbjct: 50 RMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHS 90
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Mus musculus}
SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 50.2 bits (121), Expect = 4e-10
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 5 TYLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYH--KASLHSDVKAFQCEYCGKDFARK 61
YLKVHNR H G KP+ C CG+ + + +L H + ++ + F C C + F R+
Sbjct: 21 YYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRR 79
Score = 45.2 bits (108), Expect = 4e-08
Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 5/70 (7%)
Query: 5 TYLKVHNR---VHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARK 61
L H ++ + + C VC FR+ +L+ H H+ ++C C + F +K
Sbjct: 49 ENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHM-VSHTGEMPYKCSSCSQQFMQK 107
Query: 62 YQAHSYHQIR 71
S H I+
Sbjct: 108 KDLQS-HMIK 116
Score = 39.8 bits (94), Expect = 5e-06
Identities = 16/40 (40%), Positives = 20/40 (50%)
Query: 5 TYLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHS 44
L++H H G PY C C + F Q DL+ H LHS
Sbjct: 80 MELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHS 119
Score = 39.0 bits (92), Expect = 9e-06
Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Query: 14 HLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARK 61
G C C + F LK H H+ K F+C CGK + RK
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHN-RKHTGEKPFECPKCGKCYFRK 48
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 49.9 bits (120), Expect = 5e-10
Identities = 24/60 (40%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 3 KFTYLKVHNRVHLGLKPYGC--EVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFAR 60
K ++LK H R H G KPY C E C F + +L H H+ K FQC C + F+R
Sbjct: 29 KSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRK-HTGAKPFQCGVCNRSFSR 87
Score = 38.0 bits (89), Expect = 2e-05
Identities = 14/33 (42%), Positives = 16/33 (48%)
Query: 7 LKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHK 39
L H R H G KP+ C VC R F + L H
Sbjct: 63 LTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHM 95
Score = 31.1 bits (71), Expect = 0.007
Identities = 15/56 (26%), Positives = 22/56 (39%), Gaps = 7/56 (12%)
Query: 7 LKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQC--EYCGKDFAR 60
R+H P C + + + LK H H+ K ++C E C FAR
Sbjct: 9 DLEKRRIHYCDYPG----CTKVYTKSSHLKAHL-RTHTGEKPYKCTWEGCDWRFAR 59
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 49.8 bits (120), Expect = 7e-10
Identities = 24/58 (41%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 6 YLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEY--CGKDFARK 61
LK H R H G+KP+ C+ C R F + LK H + H+ K F C + C K FAR
Sbjct: 53 QLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRT-HTGEKPFSCRWPSCQKKFARS 109
Score = 49.1 bits (118), Expect = 1e-09
Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 6 YLKVHNRVHLGLKPYGCEV--CGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARK 61
+L++H+R H G KPY C+ C R F + LK H+ H+ VK FQC+ C + F+R
Sbjct: 23 HLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQ-RRHTGVKPFQCKTCQRKFSRS 79
Score = 37.9 bits (89), Expect = 3e-05
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 5 TYLKVHNRVHLGLKPYGCEV--CGRHFRQWGDLKYHK 39
+LK H R H G KP+ C C + F + +L H
Sbjct: 80 DHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHH 116
Score = 34.0 bits (79), Expect = 9e-04
Identities = 12/47 (25%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Query: 18 KPYGCE--VCGRHFRQWGDLKYHKASLHSDVKAFQCEY--CGKDFAR 60
+P+ C C + + + L+ H H+ K +QC++ C + F+R
Sbjct: 5 RPFMCAYPGCNKRYFKLSHLQMHS-RKHTGEKPYQCDFKDCERRFSR 50
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 48.6 bits (117), Expect = 9e-10
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 6 YLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARK 61
L H +H +PY C+ CG+ F Q D+K H +H+ K +C+ CGK F++
Sbjct: 16 TLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHT-FIHTGEKPHKCQVCGKAFSQS 70
Score = 38.2 bits (90), Expect = 1e-05
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 6 YLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHK 39
+K H +H G KP+ C+VCG+ F Q +L H
Sbjct: 44 DMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHS 77
Score = 34.3 bits (80), Expect = 3e-04
Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 20 YGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARK 61
+ C++CG+ F++ L H +HSD + + C+YCGK F +K
Sbjct: 2 FDCKICGKSFKRSSTLSTHL-LIHSDTRPYPCQYCGKRFHQK 42
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 86
Score = 48.3 bits (116), Expect = 1e-09
Identities = 21/58 (36%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
Query: 7 LKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKAS---LHSDVKAFQCEYCGKDFARK 61
R H G KPY C C + FRQ L H + AF C CGK F R+
Sbjct: 3 SGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRR 60
Score = 41.4 bits (98), Expect = 7e-07
Identities = 9/58 (15%), Positives = 18/58 (31%), Gaps = 5/58 (8%)
Query: 5 TYLKVHNRVHLG----LKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDF 58
L +H + + + C CG+ F + + H + + E G
Sbjct: 29 QLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHA-DNCAGPDGVEGENSGPSS 85
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 49.5 bits (119), Expect = 2e-09
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 7 LKVHNRVHLGLKPYGCE--VCGRHFRQWGDLKYHKASLHSDVKAFQCEY--CGKDFAR 60
LK H R H G KPY CE C + F D H+ HS+ K + C+ C K +
Sbjct: 85 LKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTD 142
Score = 41.0 bits (97), Expect = 2e-06
Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Query: 7 LKVHNRVHLGLKPYGC--EVCGRHFRQWGDLKYHKASLHSDVKAFQCEY--CGKDFAR 60
L VH R H G KP+ C E C + + + +LK H S H+ K + CE+ C K F+
Sbjct: 55 LVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRS-HTGEKPYMCEHEGCSKAFSN 111
Score = 38.7 bits (91), Expect = 2e-05
Identities = 11/53 (20%), Positives = 18/53 (33%), Gaps = 2/53 (3%)
Query: 18 KPYGCEVCGRHFRQWGDLKYHKAS--LHSDVKAFQCEYCGKDFARKYQAHSYH 68
+ C + F L +H S +H + K F C + G + Y
Sbjct: 2 TDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYM 54
Score = 35.6 bits (83), Expect = 3e-04
Identities = 16/64 (25%), Positives = 24/64 (37%), Gaps = 11/64 (17%)
Query: 7 LKVH---NRVHLGLKPYGCEVCG-----RHFRQWGDLKYHKASLHSDVKAFQCEY--CGK 56
L H +H K + C G R F+ L H H+ K +C + C K
Sbjct: 19 LVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHM-RRHTGEKPHKCTFEGCRK 77
Query: 57 DFAR 60
++R
Sbjct: 78 SYSR 81
Score = 34.1 bits (79), Expect = 0.001
Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
Query: 7 LKVH-NRVHLGLKPYGCEV--CGRHFRQWGDLKYHK 39
H NR H KPY C++ C + + L+ H
Sbjct: 115 RAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHV 150
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 49.4 bits (119), Expect = 3e-09
Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 5 TYLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYQA 64
L H R H G KPY C CG+ F Q +L+ H+ H+ K + C CGK F++
Sbjct: 63 KDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQ-RTHTGEKPYACPECGKSFSQLAHL 121
Query: 65 HSYHQ 69
+ HQ
Sbjct: 122 RA-HQ 125
Score = 47.8 bits (115), Expect = 9e-09
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 5 TYLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARK 61
+ + G KPY C CG+ F + L H+ H+ K ++C CGK F+ K
Sbjct: 7 SSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQ-RTHTGEKPYKCPECGKSFSDK 62
Score = 47.4 bits (114), Expect = 1e-08
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 5 TYLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARK 61
+L H R H G KPY C CG+ F DL H+ H+ K ++C CGK F+++
Sbjct: 35 DHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQ-RTHTGEKPYKCPECGKSFSQR 90
Score = 46.7 bits (112), Expect = 3e-08
Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 5 TYLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYQA 64
+L+ H R H G KPY C CG+ F + +L H+ H+ K ++C CGK F+R+
Sbjct: 119 AHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQ-RTHTGEKPYKCPECGKSFSRRDAL 177
Query: 65 HSYHQ 69
+ HQ
Sbjct: 178 NV-HQ 181
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 45.6 bits (109), Expect = 2e-08
Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 3 KFTYLKVHNRVHLGLKPYGC--EVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFAR 60
K ++LK H R H G KPY C + CG F + +L H H+ + FQC+ C + F+R
Sbjct: 19 KSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRK-HTGHRPFQCQKCDRAFSR 77
Score = 35.2 bits (82), Expect = 2e-04
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 7 LKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHK 39
L H R H G +P+ C+ C R F + L H
Sbjct: 53 LTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHM 85
Score = 33.3 bits (77), Expect = 0.001
Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 3/49 (6%)
Query: 14 HLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQC--EYCGKDFAR 60
CG+ + + LK H + H+ K + C + CG FAR
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRT-HTGEKPYHCDWDGCGWKFAR 49
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 72
Score = 44.8 bits (107), Expect = 2e-08
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 7 LKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARK 61
+ +H G KPYGC CG+ F + L H+ +H+ K ++C CGK F++
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQ-RVHTGEKPYKCLECGKAFSQN 55
Score = 35.5 bits (83), Expect = 8e-05
Identities = 16/35 (45%), Positives = 19/35 (54%)
Query: 5 TYLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHK 39
+ L H RVH G KPY C CG+ F Q L H+
Sbjct: 28 SILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQ 62
Score = 23.2 bits (51), Expect = 6.2
Identities = 5/17 (29%), Positives = 7/17 (41%)
Query: 5 TYLKVHNRVHLGLKPYG 21
+ L H R+H G
Sbjct: 56 SGLINHQRIHTSGPSSG 72
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 44.7 bits (107), Expect = 2e-08
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 7 LKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARK 61
+ Y C+ CG+ F DL H+ H+ K ++C+ CGK F ++
Sbjct: 6 SGRSEWQQRERRRYKCDECGKSFSHSSDLSKHR-RTHTGEKPYKCDECGKAFIQR 59
Score = 36.7 bits (86), Expect = 4e-05
Identities = 15/35 (42%), Positives = 18/35 (51%)
Query: 5 TYLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHK 39
+ L H R H G KPY C+ CG+ F Q L H
Sbjct: 32 SDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHH 66
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692,
structural genomics, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 79
Score = 44.5 bits (106), Expect = 4e-08
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 6 YLKVHNRV-HLGLKPYGCE--VCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDF 58
YL H + H+ K + C CG+ F LK H LHSD + + CE+ G
Sbjct: 24 YLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHM-KLHSDTRDYICEFSGPSS 78
Score = 39.5 bits (93), Expect = 4e-06
Identities = 18/52 (34%), Positives = 21/52 (40%), Gaps = 4/52 (7%)
Query: 14 HLGLKPYGCEV--CGRHFRQWGDLKYHKASLHSDVKAFQCEY--CGKDFARK 61
G C+ CGR F L +HK H K+F C CGK F K
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFK 53
Score = 34.4 bits (80), Expect = 3e-04
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 5 TYLKVHNRVHLGLKPYGCEVCGRHF 29
+LK H ++H + Y CE G
Sbjct: 54 KHLKEHMKLHSDTRDYICEFSGPSS 78
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 43.3 bits (103), Expect = 1e-07
Identities = 11/50 (22%), Positives = 17/50 (34%), Gaps = 1/50 (2%)
Query: 12 RVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARK 61
P C C L+ H+ +H + F+C YC D +
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIHER-IHCTDRPFKCNYCSFDTKQP 50
Score = 38.2 bits (90), Expect = 8e-06
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 7 LKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKA 40
L++H R+H +P+ C C +Q +L H
Sbjct: 25 LRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMK 58
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 41.7 bits (99), Expect = 2e-07
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYH 38
+ G KPY CE+CG FR LK H
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSH 30
Score = 23.2 bits (51), Expect = 2.9
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 7 LKVHNRVHLGLKPY 20
LK H R+H G P
Sbjct: 27 LKSHLRIHTGSGPS 40
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 41.6 bits (97), Expect = 5e-07
Identities = 15/55 (27%), Positives = 21/55 (38%), Gaps = 8/55 (14%)
Query: 7 LKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARK 61
++HLG + C CG F + S S K CE C KD ++
Sbjct: 6 SGKRQKIHLGDRSQKCSKCGIIFIR--------RSTLSRRKTPMCEKCRKDSCQE 52
Score = 23.5 bits (50), Expect = 4.9
Identities = 6/30 (20%), Positives = 8/30 (26%)
Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHK 39
K CE C + Q L +
Sbjct: 30 RRSTLSRRKTPMCEKCRKDSCQEAALNKDE 59
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 42.1 bits (100), Expect = 7e-07
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 6 YLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEY--CGKDFARK 61
++ H H G + + C CG+ F + LK H+ +H+ K FQC + CGK F+
Sbjct: 22 AMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQ-LVHTGEKPFQCTFEGCGKRFSLD 77
Score = 41.7 bits (99), Expect = 1e-06
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Query: 5 TYLKVHNRVHLGLKPYGCEV--CGRHFRQWGDLKYHKASLHSDVKAFQCEY--CGKDFAR 60
+ LK H VH G KP+ C CG+ F +L+ H +H+ + + C + C K FA+
Sbjct: 48 SKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHV-RIHTGDRPYVCPFDGCNKKFAQ 106
Query: 61 K 61
Sbjct: 107 S 107
Score = 35.6 bits (83), Expect = 2e-04
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 6 YLKVHNRVHLGLKPYGCEV--CGRHFRQWGDLKYHK 39
L+ H R+H G +PY C C + F Q +LK H
Sbjct: 79 NLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHI 114
Score = 33.3 bits (77), Expect = 0.001
Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 4/45 (8%)
Query: 18 KPYGC--EVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFAR 60
+ C + C + FR ++ H H + C CGK F
Sbjct: 4 RTIACPHKGCTKMFRDNSAMRKHL-HTHGP-RVHVCAECGKAFVE 46
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 42.3 bits (100), Expect = 1e-06
Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 5/59 (8%)
Query: 7 LKVHNRVHLGLKPYGCEV--CGRHFRQWGDLKYHKASLHSDVKAFQCEY--CGKDFARK 61
L H RVH G KP+ C CG+ F + +LK HK + H+ K F+CE+ C + FA
Sbjct: 78 LVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRT-HTGEKPFKCEFEGCDRRFANS 135
Score = 41.5 bits (98), Expect = 2e-06
Identities = 12/62 (19%), Positives = 16/62 (25%), Gaps = 8/62 (12%)
Query: 9 VHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLH--------SDVKAFQCEYCGKDFAR 60
+ + C R F +L H H +C GK F
Sbjct: 15 SCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKA 74
Query: 61 KY 62
KY
Sbjct: 75 KY 76
Score = 38.0 bits (89), Expect = 4e-05
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 7 LKVHNRVHLGLKPYGCEV--CGRHFRQWGDLKYHKASLHSDVKAFQC 51
LK+H R H G KP+ CE C R F D K H +H+ K+
Sbjct: 108 LKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHM-HVHTSDKSGPS 153
Score = 36.9 bits (86), Expect = 9e-05
Identities = 18/65 (27%), Positives = 24/65 (36%), Gaps = 12/65 (18%)
Query: 7 LKVHNRVHLGLKPY---------GCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEY--CG 55
L H + P C G+ F+ L H +H+ K F C + CG
Sbjct: 41 LVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHI-RVHTGEKPFPCPFPGCG 99
Query: 56 KDFAR 60
K FAR
Sbjct: 100 KIFAR 104
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 40.3 bits (95), Expect = 2e-06
Identities = 17/60 (28%), Positives = 22/60 (36%), Gaps = 3/60 (5%)
Query: 3 KFTYLKVHNRVHLGLKPYGC--EVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFAR 60
K LKVH H PY C E C + F LK H+ H+ + + C
Sbjct: 15 KHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKV-HAGYPCKKDDSCSFVGKT 73
Score = 36.1 bits (84), Expect = 9e-05
Identities = 11/37 (29%), Positives = 14/37 (37%)
Query: 7 LKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLH 43
LK H +VH G + C + W H A H
Sbjct: 49 LKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECH 85
Score = 25.3 bits (56), Expect = 1.2
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 22 CEVCGRHFRQWGDLKYHKASLHSDVKAFQCEY--CGKDFAR 60
E CG+ F++ LK H+ S H+ ++C + C K F+
Sbjct: 6 FENCGKAFKKHNQLKVHQFS-HTQQLPYECPHEGCDKRFSL 45
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 40.0 bits (94), Expect = 2e-06
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 10 HNRVHLGLKPYGC--EVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFAR 60
N V ++PY C E C R F + +L H +H+ K FQC C ++F+R
Sbjct: 10 LNYVVPKMRPYACPVESCDRRFSRSDELTRHI-RIHTGQKPFQCRICMRNFSR 61
Score = 37.3 bits (87), Expect = 2e-05
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 7 LKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHK 39
L H R+H G KP+ C +C R+F + L H
Sbjct: 37 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI 69
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 39.0 bits (92), Expect = 3e-06
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 18 KPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARK 61
+ + CEVC R F + LK H S H++ K + C C + F R+
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRS-HTNEKPYPCGLCNRAFTRR 43
Score = 37.1 bits (87), Expect = 2e-05
Identities = 16/38 (42%), Positives = 19/38 (50%)
Query: 7 LKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHS 44
LK H R H KPY C +C R F + L H +HS
Sbjct: 18 LKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHS 55
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 38.3 bits (90), Expect = 4e-06
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHK 39
+ G KPY CE CG F Q L+ H
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHV 31
Score = 22.9 bits (50), Expect = 4.6
Identities = 5/14 (35%), Positives = 7/14 (50%)
Query: 7 LKVHNRVHLGLKPY 20
L+ H +H G P
Sbjct: 27 LRAHVLIHTGSGPS 40
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.3 bits (90), Expect = 4e-06
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 9 VHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQC 51
+G K Y C+VCG+ F Q L+ H+ +H+ K
Sbjct: 2 SSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQ-RVHTGEKPSGP 43
Score = 26.7 bits (60), Expect = 0.16
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 5 TYLKVHNRVHLGLKPYGC 22
++L+ H RVH G KP G
Sbjct: 26 SHLQTHQRVHTGEKPSGP 43
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 37.9 bits (89), Expect = 6e-06
Identities = 13/42 (30%), Positives = 15/42 (35%)
Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQC 51
G KPY C CG+ F Q L H H+ K
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 39.9 bits (94), Expect = 9e-06
Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 5/60 (8%)
Query: 6 YLKVHNRVHLGLKPYGCE--VCGRHFRQWGDLKYHKASLHSDVKAFQCE--YCGKDFARK 61
L+ H H G KP+ C+ C + F L H H+ K F C+ C F K
Sbjct: 29 KLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHS-LTHTGEKNFTCDSDGCDLRFTTK 87
Score = 39.9 bits (94), Expect = 1e-05
Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
Query: 6 YLKVHNRVHLGLKPYGC--EVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGK 56
LKVH H PY C E C + F LK H+ +H+ + + C
Sbjct: 121 QLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHE-KVHAGYPCKKDDSCSF 172
Score = 38.0 bits (89), Expect = 5e-05
Identities = 14/58 (24%), Positives = 22/58 (37%), Gaps = 5/58 (8%)
Query: 10 HNRVHLGLKPYGCEV--CGRHFRQWGDLKYHKASLHSDVKAFQCEY--CGKDFARKYQ 63
+ + K Y C CG + + L+ H H+ K F C+ C K F +
Sbjct: 3 EKALPVVYKRYICSFADCGAAYNKNWKLQAHL-CKHTGEKPFPCKEEGCEKGFTSLHH 59
Score = 37.6 bits (88), Expect = 7e-05
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 7/64 (10%)
Query: 6 YLKVHNRVHLGLKPYGCE--VCGRHFRQWGDLKYHKASLHSDVKA--FQCEY--CGKDFA 59
+L H+ H G K + C+ C F ++K H + ++K + C + CGK F
Sbjct: 59 HLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHF-NRFHNIKICVYVCHFENCGKAFK 117
Query: 60 RKYQ 63
+ Q
Sbjct: 118 KHNQ 121
Score = 35.3 bits (82), Expect = 5e-04
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 7/63 (11%)
Query: 5 TYLKVHNRVHLGLK--PYGCEV--CGRHFRQWGDLKYHKASLHSDVKAFQC--EYCGKDF 58
+K H +K Y C CG+ F++ LK H+ H+ ++C E C K F
Sbjct: 88 ANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQ-FSHTQQLPYECPHEGCDKRF 146
Query: 59 ARK 61
+
Sbjct: 147 SLP 149
Score = 34.5 bits (80), Expect = 9e-04
Identities = 12/40 (30%), Positives = 15/40 (37%)
Query: 6 YLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSD 45
LK H +VH G + C + W H A H D
Sbjct: 151 RLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECHQD 190
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 9e-06
Identities = 11/44 (25%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 9 VHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCE 52
G KP+ C++CG+ F L H +H+ K
Sbjct: 2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHS-MVHTAEKPSGPS 44
Score = 26.7 bits (60), Expect = 0.14
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 5 TYLKVHNRVHLGLKPYGCE 23
+ L H+ VH KP G
Sbjct: 26 SRLNRHSMVHTAEKPSGPS 44
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 36.4 bits (85), Expect = 3e-05
Identities = 14/43 (32%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCE 52
G KPY CE CG+ F DL H +H+ K
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHM-VHTGEKPSGPS 44
Score = 26.3 bits (59), Expect = 0.19
Identities = 8/19 (42%), Positives = 9/19 (47%)
Query: 5 TYLKVHNRVHLGLKPYGCE 23
L H+ VH G KP G
Sbjct: 26 RDLYTHHMVHTGEKPSGPS 44
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 36.0 bits (84), Expect = 4e-05
Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCE 52
G KPY C+ CG+ FR L H+ +HS K
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQ-RVHSGEKPSGPS 44
Score = 26.0 bits (58), Expect = 0.30
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 5 TYLKVHNRVHLGLKPYGCE 23
+ L H RVH G KP G
Sbjct: 26 SCLLKHQRVHSGEKPSGPS 44
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.0 bits (84), Expect = 4e-05
Identities = 14/44 (31%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 9 VHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCE 52
G KPYGC CG+ F Q L H+ H+ K
Sbjct: 2 SSGSSGSGEKPYGCNECGKTFSQKSILSAHQ-RTHTGEKPSGPS 44
Score = 26.7 bits (60), Expect = 0.18
Identities = 8/19 (42%), Positives = 9/19 (47%)
Query: 5 TYLKVHNRVHLGLKPYGCE 23
+ L H R H G KP G
Sbjct: 26 SILSAHQRTHTGEKPSGPS 44
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.6 bits (83), Expect = 5e-05
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCE 52
G+KPY C CG+ F + L H+ +H+ K
Sbjct: 3 SGSSGTGVKPYMCNECGKAFSVYSSLTTHQV-IHTGEKPSGPS 44
Score = 25.9 bits (58), Expect = 0.34
Identities = 7/17 (41%), Positives = 8/17 (47%)
Query: 7 LKVHNRVHLGLKPYGCE 23
L H +H G KP G
Sbjct: 28 LTTHQVIHTGEKPSGPS 44
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 42
Score = 35.6 bits (83), Expect = 5e-05
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHK 39
+ G KPY C+ CG+ F Q G L H
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHI 31
Score = 22.9 bits (50), Expect = 4.9
Identities = 8/14 (57%), Positives = 8/14 (57%)
Query: 7 LKVHNRVHLGLKPY 20
L VH RVH G P
Sbjct: 27 LIVHIRVHTGSGPS 40
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 35.6 bits (83), Expect = 5e-05
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQC 51
G +PYGC CG++F + L H H K+
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHL-KRHFREKSSGP 43
Score = 24.4 bits (54), Expect = 1.1
Identities = 5/18 (27%), Positives = 8/18 (44%)
Query: 5 TYLKVHNRVHLGLKPYGC 22
++L H + H K G
Sbjct: 26 SHLIEHLKRHFREKSSGP 43
Score = 22.5 bits (49), Expect = 6.5
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 41 SLHSDVKAFQCEYCGKDFARK 61
S S + + C CGK+F R
Sbjct: 5 SSGSGERPYGCNECGKNFGRH 25
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 45
Score = 35.6 bits (83), Expect = 6e-05
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQC 51
G KP+ C CG+ FR G+L H+ +H+ K+
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQ-RIHTGEKSGPS 43
Score = 24.4 bits (54), Expect = 1.2
Identities = 6/16 (37%), Positives = 7/16 (43%)
Query: 7 LKVHNRVHLGLKPYGC 22
L H R+H G K
Sbjct: 28 LVTHQRIHTGEKSGPS 43
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.6 bits (83), Expect = 6e-05
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQC 51
G KPY C+VC + FR L H+ +H+ K
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQR-IHTGEKPSGP 43
Score = 25.9 bits (58), Expect = 0.27
Identities = 9/16 (56%), Positives = 10/16 (62%)
Query: 7 LKVHNRVHLGLKPYGC 22
L VH R+H G KP G
Sbjct: 28 LTVHQRIHTGEKPSGP 43
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 35.2 bits (82), Expect = 7e-05
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQC 51
G KPY C+VCG+ FR L H S+HS +
Sbjct: 3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHH-SVHSGERPSGP 43
Score = 25.2 bits (56), Expect = 0.70
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 5 TYLKVHNRVHLGLKPYGC 22
++L H+ VH G +P G
Sbjct: 26 SHLVQHHSVHSGERPSGP 43
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 36.7 bits (84), Expect = 7e-05
Identities = 9/63 (14%), Positives = 20/63 (31%), Gaps = 1/63 (1%)
Query: 7 LKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYH-KASLHSDVKAFQCEYCGKDFARKYQAH 65
K++ + G + C+ C + +L H + H + + K +
Sbjct: 7 GKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKR 66
Query: 66 SYH 68
S
Sbjct: 67 SLL 69
Score = 30.1 bits (67), Expect = 0.022
Identities = 9/37 (24%), Positives = 9/37 (24%)
Query: 7 LKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLH 43
L K C CG F DL H
Sbjct: 68 LLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTK 104
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.2 bits (82), Expect = 7e-05
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCE 52
G KPY C CG+ FR +L H+ +H+ K
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQV-IHTGEKPSGPS 44
Score = 25.9 bits (58), Expect = 0.34
Identities = 7/17 (41%), Positives = 8/17 (47%)
Query: 7 LKVHNRVHLGLKPYGCE 23
L H +H G KP G
Sbjct: 28 LTTHQVIHTGEKPSGPS 44
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.2 bits (82), Expect = 9e-05
Identities = 13/44 (29%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 9 VHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCE 52
G KPY C+VC + F L H+ +HS K
Sbjct: 2 SSGSSGTGEKPYECDVCRKAFSHHASLTQHQ-RVHSGEKPSGPS 44
Score = 25.9 bits (58), Expect = 0.31
Identities = 9/19 (47%), Positives = 9/19 (47%)
Query: 5 TYLKVHNRVHLGLKPYGCE 23
L H RVH G KP G
Sbjct: 26 ASLTQHQRVHSGEKPSGPS 44
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.2 bits (82), Expect = 9e-05
Identities = 13/44 (29%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 9 VHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCE 52
G KPY C CG+ F Q L H+ +H+ K
Sbjct: 2 SSGSSGTGKKPYKCNECGKVFTQNSHLARHR-GIHTGEKPSGPS 44
Score = 25.9 bits (58), Expect = 0.34
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 5 TYLKVHNRVHLGLKPYGCE 23
++L H +H G KP G
Sbjct: 26 SHLARHRGIHTGEKPSGPS 44
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.8 bits (81), Expect = 1e-04
Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCE 52
G KPY C+VC + F Q L H+ H+ K
Sbjct: 3 SGSSGTGEKPYECKVCSKAFTQKAHLAQHQ-KTHTGEKPSGPS 44
Score = 26.3 bits (59), Expect = 0.26
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 5 TYLKVHNRVHLGLKPYGCE 23
+L H + H G KP G
Sbjct: 26 AHLAQHQKTHTGEKPSGPS 44
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.8 bits (81), Expect = 1e-04
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYH 38
G KPY C CG+ +++ DL +H
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFH 31
Score = 26.7 bits (60), Expect = 0.18
Identities = 8/18 (44%), Positives = 8/18 (44%)
Query: 5 TYLKVHNRVHLGLKPYGC 22
L H RVH G K G
Sbjct: 26 LDLDFHQRVHTGEKLSGP 43
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 34.8 bits (81), Expect = 1e-04
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHK 39
KPY CE CG+ + + +L H+
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQ 32
Score = 25.9 bits (58), Expect = 0.30
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 7 LKVHNRVHLGLKPYGC 22
L +H RVH+G K G
Sbjct: 28 LDMHQRVHMGEKTSGP 43
Score = 22.8 bits (50), Expect = 5.6
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 43 HSDVKAFQCEYCGKDFARKYQAHSYHQ 69
S K ++CE CGK + R+ HQ
Sbjct: 7 GSVEKPYKCEDCGKGYNRRLNLDM-HQ 32
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 34.8 bits (81), Expect = 1e-04
Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQC 51
G+KPYGC C + F L H+ H+ VK
Sbjct: 3 SGSSGTGVKPYGCSQCAKTFSLKSQLIVHQ-RSHTGVKPSGP 43
Score = 26.3 bits (59), Expect = 0.20
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 5 TYLKVHNRVHLGLKPYGC 22
+ L VH R H G+KP G
Sbjct: 26 SQLIVHQRSHTGVKPSGP 43
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.8 bits (81), Expect = 1e-04
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHK 39
G KPY CE CG+ + +L H+
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQ 32
Score = 26.0 bits (58), Expect = 0.32
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 7 LKVHNRVHLGLKPYGC 22
L +H +VH G +P G
Sbjct: 28 LDMHQKVHTGERPSGP 43
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 34.8 bits (81), Expect = 1e-04
Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQC 51
G K Y C+ CG+ F + L H+ LHS K
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHE-RLHSGEKPSGP 43
Score = 26.3 bits (59), Expect = 0.25
Identities = 8/18 (44%), Positives = 9/18 (50%)
Query: 5 TYLKVHNRVHLGLKPYGC 22
L H R+H G KP G
Sbjct: 26 PCLLKHERLHSGEKPSGP 43
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.8 bits (81), Expect = 1e-04
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCE 52
G KPY CE CG+ F L+ H+ +H+ K
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQR-IHTGEKPSGPS 44
Score = 26.3 bits (59), Expect = 0.20
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 5 TYLKVHNRVHLGLKPYGCE 23
+ L+ H R+H G KP G
Sbjct: 26 SQLQEHQRIHTGEKPSGPS 44
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.8 bits (81), Expect = 1e-04
Identities = 12/43 (27%), Positives = 15/43 (34%), Gaps = 1/43 (2%)
Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCE 52
G KPY C VCG+ F L H +H+
Sbjct: 3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQHL-RVHTQETLSGPS 44
Score = 25.9 bits (58), Expect = 0.28
Identities = 6/19 (31%), Positives = 7/19 (36%)
Query: 5 TYLKVHNRVHLGLKPYGCE 23
+L H RVH G
Sbjct: 26 AHLNQHLRVHTQETLSGPS 44
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.8 bits (81), Expect = 1e-04
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHK 39
G KP+ CE CG+ F Q L H+
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQNSQLHSHQ 32
Score = 25.9 bits (58), Expect = 0.34
Identities = 9/18 (50%), Positives = 10/18 (55%)
Query: 5 TYLKVHNRVHLGLKPYGC 22
+ L H RVH G KP G
Sbjct: 26 SQLHSHQRVHTGEKPSGP 43
Score = 22.1 bits (48), Expect = 8.2
Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 43 HSDVKAFQCEYCGKDFARKYQAHSYHQ 69
S K F+CE CGK F + Q HS HQ
Sbjct: 7 GSGEKPFKCEECGKRFTQNSQLHS-HQ 32
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.4 bits (80), Expect = 1e-04
Identities = 15/42 (35%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQC 51
G KPY C CG+ FR L H+A HS K
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQA-THSGEKPSGP 43
Score = 26.3 bits (59), Expect = 0.20
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 5 TYLKVHNRVHLGLKPYGC 22
+ L +H H G KP G
Sbjct: 26 SSLAIHQATHSGEKPSGP 43
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 34.5 bits (80), Expect = 2e-04
Identities = 13/46 (28%), Positives = 16/46 (34%), Gaps = 2/46 (4%)
Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCG 55
G KP+ CE CG+ F H+ HS K G
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQ-RSHSGEKPSGPS-SG 46
Score = 27.1 bits (61), Expect = 0.12
Identities = 8/22 (36%), Positives = 9/22 (40%), Gaps = 1/22 (4%)
Query: 5 TYLKVHNRVHLGLKPYGCEVCG 26
+ H R H G KP G G
Sbjct: 26 SQCYSHQRSHSGEKPSGPS-SG 46
Score = 22.1 bits (48), Expect = 9.0
Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 43 HSDVKAFQCEYCGKDFARKYQAHSYHQ 69
S K F+CE CGK F Q +S HQ
Sbjct: 7 GSGEKPFKCEECGKGFYTNSQCYS-HQ 32
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.4 bits (80), Expect = 2e-04
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYH 38
G +PY C VCG+ F +L H
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKH 31
Score = 25.1 bits (56), Expect = 0.67
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 7 LKVHNRVHLGLKPYGC 22
L H ++H G KP G
Sbjct: 28 LIKHQKIHTGEKPSGP 43
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.5 bits (80), Expect = 2e-04
Identities = 11/43 (25%), Positives = 15/43 (34%), Gaps = 1/43 (2%)
Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCE 52
G KPY C CG+ F H+ LH+ +
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQ-RLHTGQRPSGPS 44
Score = 25.6 bits (57), Expect = 0.42
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 5 TYLKVHNRVHLGLKPYGCE 23
+ H R+H G +P G
Sbjct: 26 SSCTQHQRLHTGQRPSGPS 44
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.4 bits (80), Expect = 2e-04
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYH 38
G KPY C CG+ F +L H
Sbjct: 3 SGSSGTGEKPYRCAECGKAFTDRSNLFTH 31
Score = 26.3 bits (59), Expect = 0.24
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 7 LKVHNRVHLGLKPYGCE 23
L H ++H G KP G
Sbjct: 28 LFTHQKIHTGEKPSGPS 44
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 34.5 bits (79), Expect = 2e-04
Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 18 KPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYC 54
K CE+CG+ FR L HK S HS K +
Sbjct: 11 KQVACEICGKIFRDVYHLNRHKLS-HSGEKPYSSGPS 46
Score = 23.7 bits (51), Expect = 2.5
Identities = 7/20 (35%), Positives = 8/20 (40%)
Query: 6 YLKVHNRVHLGLKPYGCEVC 25
+L H H G KPY
Sbjct: 27 HLNRHKLSHSGEKPYSSGPS 46
Score = 22.6 bits (48), Expect = 6.2
Identities = 9/23 (39%), Positives = 9/23 (39%)
Query: 40 ASLHSDVKAFQCEYCGKDFARKY 62
S K CE CGK F Y
Sbjct: 4 GSSGRTRKQVACEICGKIFRDVY 26
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.4 bits (80), Expect = 2e-04
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQC 51
G KP+ CE CG+ F Q L H+ +H+ K
Sbjct: 3 SGSSGSGEKPFQCEECGKRFTQNSHLHSHQ-RVHTGEKPSGP 43
Score = 26.0 bits (58), Expect = 0.27
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 5 TYLKVHNRVHLGLKPYGC 22
++L H RVH G KP G
Sbjct: 26 SHLHSHQRVHTGEKPSGP 43
Score = 22.1 bits (48), Expect = 9.3
Identities = 11/21 (52%), Positives = 12/21 (57%)
Query: 41 SLHSDVKAFQCEYCGKDFARK 61
S S K FQCE CGK F +
Sbjct: 5 SSGSGEKPFQCEECGKRFTQN 25
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.4 bits (80), Expect = 2e-04
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 9 VHNRVHLGLKPYGCEVCGRHFRQWGDLKYH 38
G KPY C +CG+ F + L H
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVH 31
Score = 26.7 bits (60), Expect = 0.16
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 5 TYLKVHNRVHLGLKPYGC 22
+ L VH ++H G KP G
Sbjct: 26 SQLHVHQQIHTGEKPSGP 43
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.4 bits (80), Expect = 2e-04
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCE 52
G KP+ C+ CG+ FRQ L H +H+ K
Sbjct: 3 SGSSGSGEKPFKCKECGKAFRQNIHLASHL-RIHTGEKPSGPS 44
Score = 25.5 bits (57), Expect = 0.46
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 5 TYLKVHNRVHLGLKPYGCE 23
+L H R+H G KP G
Sbjct: 26 IHLASHLRIHTGEKPSGPS 44
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 34.1 bits (79), Expect = 2e-04
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHK 39
G +PY C CG+ F+ L H+
Sbjct: 3 SGSSGTGQRPYECIECGKAFKTKSSLICHR 32
Score = 26.0 bits (58), Expect = 0.35
Identities = 8/18 (44%), Positives = 9/18 (50%)
Query: 5 TYLKVHNRVHLGLKPYGC 22
+ L H R H G KP G
Sbjct: 26 SSLICHRRSHTGEKPSGP 43
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 34.0 bits (79), Expect = 2e-04
Identities = 10/43 (23%), Positives = 14/43 (32%), Gaps = 1/43 (2%)
Query: 9 VHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQC 51
G KPY C C + F +L H+ H+
Sbjct: 2 SSGSSGTGEKPYECNECQKAFNTKSNLMVHQ-RTHTGESGPSS 43
Score = 25.1 bits (56), Expect = 0.54
Identities = 6/16 (37%), Positives = 6/16 (37%)
Query: 7 LKVHNRVHLGLKPYGC 22
L VH R H G
Sbjct: 28 LMVHQRTHTGESGPSS 43
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
PDB: 2yta_A
Length = 42
Score = 34.2 bits (79), Expect = 2e-04
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYH 38
+ G PY C CG+ F Q G L H
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVH 30
Score = 22.2 bits (48), Expect = 9.2
Identities = 5/14 (35%), Positives = 5/14 (35%)
Query: 7 LKVHNRVHLGLKPY 20
L VH R P
Sbjct: 27 LAVHQRSCSQSGPS 40
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.0 bits (79), Expect = 2e-04
Identities = 11/31 (35%), Positives = 13/31 (41%)
Query: 9 VHNRVHLGLKPYGCEVCGRHFRQWGDLKYHK 39
G KPY C VCG+ F L H+
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQ 32
Score = 26.3 bits (59), Expect = 0.21
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 5 TYLKVHNRVHLGLKPYGCE 23
L VH R+H G KP G
Sbjct: 26 QSLSVHQRIHSGKKPSGPS 44
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.0 bits (79), Expect = 2e-04
Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCE 52
G KPY C CG+ F Q L H+ +H+ K
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQ-RVHTGEKPSGPS 44
Score = 26.0 bits (58), Expect = 0.33
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 5 TYLKVHNRVHLGLKPYGCE 23
+ L H RVH G KP G
Sbjct: 26 SKLARHQRVHTGEKPSGPS 44
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.0 bits (79), Expect = 2e-04
Identities = 10/42 (23%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQC 51
G K + C C + F Q L H+ +H+ K
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQ-RIHTGEKPSGP 43
Score = 26.7 bits (60), Expect = 0.17
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 5 TYLKVHNRVHLGLKPYGC 22
+ L VH R+H G KP G
Sbjct: 26 SSLTVHQRIHTGEKPSGP 43
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.0 bits (79), Expect = 2e-04
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHK 39
G KPY C+ CG+ F +L H+
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQ 32
Score = 25.2 bits (56), Expect = 0.69
Identities = 8/18 (44%), Positives = 9/18 (50%)
Query: 5 TYLKVHNRVHLGLKPYGC 22
L H R+H G KP G
Sbjct: 26 AELVRHQRIHTGEKPSGP 43
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.0 bits (79), Expect = 2e-04
Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCE 52
G KPY C CG+ FR L H+ +H+ K
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQR-IHTGEKPSGPS 44
Score = 26.7 bits (60), Expect = 0.18
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 5 TYLKVHNRVHLGLKPYGCE 23
+YL H R+H G KP G
Sbjct: 26 SYLSRHQRIHTGEKPSGPS 44
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.0 bits (79), Expect = 3e-04
Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCE 52
G KPY C CG+ F Q L H+ +H+ K
Sbjct: 3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQ-RIHTGEKPSGPS 44
Score = 25.9 bits (58), Expect = 0.29
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 5 TYLKVHNRVHLGLKPYGCE 23
+ L H R+H G KP G
Sbjct: 26 SKLARHQRIHTGEKPSGPS 44
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 33.7 bits (78), Expect = 3e-04
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYH 38
G KPY C CG+ F L+ H
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIH 31
Score = 26.0 bits (58), Expect = 0.28
Identities = 5/17 (29%), Positives = 9/17 (52%)
Query: 6 YLKVHNRVHLGLKPYGC 22
L++H + H G + G
Sbjct: 27 RLRIHQKCHTGERHSGP 43
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 33.6 bits (78), Expect = 3e-04
Identities = 11/30 (36%), Positives = 13/30 (43%)
Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHK 39
G KPY C CG+ F Q L H+
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRHR 32
Score = 26.3 bits (59), Expect = 0.24
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 5 TYLKVHNRVHLGLKPYGCE 23
++L H R+H G KP G
Sbjct: 26 SHLNRHRRIHTGEKPSGPS 44
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 33.6 bits (78), Expect = 3e-04
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYH 38
G KPY C CG+ F +L H
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKH 31
Score = 25.2 bits (56), Expect = 0.57
Identities = 6/17 (35%), Positives = 8/17 (47%)
Query: 7 LKVHNRVHLGLKPYGCE 23
L H ++H KP G
Sbjct: 28 LIKHQKIHTKQKPSGPS 44
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 33.7 bits (78), Expect = 3e-04
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHK 39
+G K + C C F Q L+ H+
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQ 32
Score = 26.7 bits (60), Expect = 0.16
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 6 YLKVHNRVHLGLKPYGC 22
L++H VH+G KP G
Sbjct: 27 SLRLHQNVHVGEKPSGP 43
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 33.7 bits (78), Expect = 3e-04
Identities = 11/42 (26%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQC 51
G + Y C CG+ F Q L H+ +H K
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMHQ-RIHRGEKPSGP 43
Score = 26.3 bits (59), Expect = 0.23
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 5 TYLKVHNRVHLGLKPYGC 22
+ L +H R+H G KP G
Sbjct: 26 STLSMHQRIHRGEKPSGP 43
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 33.6 bits (78), Expect = 3e-04
Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCE 52
G KPY C CG+ F Q L H+ +H+ VK
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQ-RIHTGVKPSGPS 44
Score = 25.9 bits (58), Expect = 0.29
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 5 TYLKVHNRVHLGLKPYGCE 23
++L H R+H G+KP G
Sbjct: 26 SHLANHQRIHTGVKPSGPS 44
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 33.6 bits (78), Expect = 3e-04
Identities = 8/29 (27%), Positives = 11/29 (37%)
Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYH 38
G P+ C CG+ F +L H
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIH 31
Score = 25.9 bits (58), Expect = 0.31
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 5 TYLKVHNRVHLGLKPYGC 22
T L +H ++H G +P G
Sbjct: 26 TNLIIHQKIHTGERPSGP 43
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 33.7 bits (78), Expect = 3e-04
Identities = 10/30 (33%), Positives = 12/30 (40%)
Query: 9 VHNRVHLGLKPYGCEVCGRHFRQWGDLKYH 38
G KPY C CG+ F + L H
Sbjct: 2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVH 31
Score = 26.7 bits (60), Expect = 0.17
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 5 TYLKVHNRVHLGLKPYGC 22
+ L VH R+H G P G
Sbjct: 26 SQLHVHQRIHTGENPSGP 43
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 33.7 bits (78), Expect = 3e-04
Identities = 8/29 (27%), Positives = 9/29 (31%)
Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYH 38
K + C CGR F L H
Sbjct: 3 SGSSGSSTKSHQCHECGRGFTLKSHLNQH 31
Score = 26.0 bits (58), Expect = 0.36
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 5 TYLKVHNRVHLGLKPYGC 22
++L H R+H G KP G
Sbjct: 26 SHLNQHQRIHTGEKPSGP 43
Score = 24.0 bits (53), Expect = 1.5
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 41 SLHSDVKAFQCEYCGKDFARK 61
S S K+ QC CG+ F K
Sbjct: 5 SSGSSTKSHQCHECGRGFTLK 25
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 33.6 bits (78), Expect = 3e-04
Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCE 52
G K Y C CG+ F + L H+ +H+ K
Sbjct: 3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQ-KIHTGEKPSGPS 44
Score = 25.9 bits (58), Expect = 0.28
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 5 TYLKVHNRVHLGLKPYGCE 23
+ L H ++H G KP G
Sbjct: 26 SQLSQHQKIHTGEKPSGPS 44
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 33.6 bits (78), Expect = 3e-04
Identities = 8/29 (27%), Positives = 11/29 (37%)
Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYH 38
G KP+ C C + F +L H
Sbjct: 3 SGSSGTGEKPFECSECQKAFNTKSNLIVH 31
Score = 26.3 bits (59), Expect = 0.21
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 5 TYLKVHNRVHLGLKPYGCE 23
+ L VH R H G KP G
Sbjct: 26 SNLIVHQRTHTGEKPSGPS 44
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 33.6 bits (78), Expect = 3e-04
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHK 39
G KPY C CG+ F Q +L H+
Sbjct: 3 SGSSGTGEKPYRCGECGKAFAQKANLTQHQ 32
Score = 25.2 bits (56), Expect = 0.58
Identities = 8/18 (44%), Positives = 9/18 (50%)
Query: 5 TYLKVHNRVHLGLKPYGC 22
L H R+H G KP G
Sbjct: 26 ANLTQHQRIHTGEKPSGP 43
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 33.7 bits (78), Expect = 3e-04
Identities = 14/43 (32%), Positives = 15/43 (34%), Gaps = 1/43 (2%)
Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCE 52
G KPYGC CG+ F L H HS K
Sbjct: 3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHM-RTHSGEKPSGPS 44
Score = 27.5 bits (62), Expect = 0.078
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 5 TYLKVHNRVHLGLKPYGCE 23
+YL +H R H G KP G
Sbjct: 26 SYLIIHMRTHSGEKPSGPS 44
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 33.6 bits (78), Expect = 3e-04
Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCE 52
G KP+ C CG+ F L H+ +H+ K
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHR-RIHTGEKPSGPS 44
Score = 25.9 bits (58), Expect = 0.29
Identities = 8/19 (42%), Positives = 9/19 (47%)
Query: 5 TYLKVHNRVHLGLKPYGCE 23
L H R+H G KP G
Sbjct: 26 IGLNQHRRIHTGEKPSGPS 44
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 33.6 bits (78), Expect = 4e-04
Identities = 11/30 (36%), Positives = 12/30 (40%)
Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHK 39
G KPY C CG+ F Q L H
Sbjct: 3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHW 32
Score = 25.9 bits (58), Expect = 0.31
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 5 TYLKVHNRVHLGLKPYGC 22
++L H R+H G KP G
Sbjct: 26 SHLTNHWRIHTGEKPSGP 43
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 33.6 bits (78), Expect = 4e-04
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCE 52
G KPY C CG+ FR+ L H+ +H+ K
Sbjct: 3 SGSSGTGEKPYKCHECGKVFRRNSHLARHQL-IHTGEKPSGPS 44
Score = 25.5 bits (57), Expect = 0.51
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 5 TYLKVHNRVHLGLKPYGCE 23
++L H +H G KP G
Sbjct: 26 SHLARHQLIHTGEKPSGPS 44
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 33.3 bits (77), Expect = 4e-04
Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCE 52
G KPY C CG+ F L H+A +H+ K
Sbjct: 3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQA-IHTGKKPSGPS 44
Score = 26.0 bits (58), Expect = 0.35
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 5 TYLKVHNRVHLGLKPYGCE 23
+ L H +H G KP G
Sbjct: 26 SSLTTHQAIHTGKKPSGPS 44
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 34.9 bits (79), Expect = 4e-04
Identities = 10/52 (19%), Positives = 15/52 (28%), Gaps = 3/52 (5%)
Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARK 61
+ + C +C F LK H + C C K+F
Sbjct: 65 RLLASKAISQFVCPLCLMPFSSSVSLKQH---IRYTEHTKVCPVCKKEFTST 113
Score = 26.0 bits (56), Expect = 0.80
Identities = 10/40 (25%), Positives = 12/40 (30%), Gaps = 2/40 (5%)
Query: 5 TYLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHS 44
LK H R C VC + F H H+
Sbjct: 88 VSLKQHIRYTE--HTKVCPVCKKEFTSTDSALDHVCKKHN 125
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 33.3 bits (77), Expect = 4e-04
Identities = 10/30 (33%), Positives = 11/30 (36%)
Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHK 39
G KPY C CG+ F L H
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHW 32
Score = 26.0 bits (58), Expect = 0.27
Identities = 6/18 (33%), Positives = 6/18 (33%)
Query: 5 TYLKVHNRVHLGLKPYGC 22
L H H KP G
Sbjct: 26 YRLTQHWITHTREKPSGP 43
Score = 22.9 bits (50), Expect = 5.2
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 41 SLHSDVKAFQCEYCGKDFARKYQ 63
S K +QC CGK F+ Y+
Sbjct: 5 SSGEGEKPYQCSECGKSFSGSYR 27
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 33.4 bits (77), Expect = 4e-04
Identities = 13/45 (28%), Positives = 17/45 (37%), Gaps = 3/45 (6%)
Query: 10 HNRVHLGLKPYGC--EVCGRHFRQWGDLKYHKASLHSDVKAFQCE 52
G KP+ C CG F + +L H+ HS VK
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHR-RSHSGVKPSGPS 46
Score = 25.0 bits (55), Expect = 0.94
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 7 LKVHNRVHLGLKPYGCE 23
L H R H G+KP G
Sbjct: 30 LSRHRRSHSGVKPSGPS 46
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 33.3 bits (77), Expect = 4e-04
Identities = 9/30 (30%), Positives = 11/30 (36%)
Query: 9 VHNRVHLGLKPYGCEVCGRHFRQWGDLKYH 38
G PY C CG+ F + L H
Sbjct: 2 SSGSSGTGENPYECHECGKAFSRKYQLISH 31
Score = 25.5 bits (57), Expect = 0.45
Identities = 8/18 (44%), Positives = 8/18 (44%)
Query: 5 TYLKVHNRVHLGLKPYGC 22
L H R H G KP G
Sbjct: 26 YQLISHQRTHAGEKPSGP 43
Score = 22.1 bits (48), Expect = 8.8
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 43 HSDVKAFQCEYCGKDFARKYQ 63
+ ++C CGK F+RKYQ
Sbjct: 7 GTGENPYECHECGKAFSRKYQ 27
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 33.3 bits (77), Expect = 4e-04
Identities = 12/42 (28%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQC 51
G KP+ C CG+ F + L H LH+ K
Sbjct: 3 SGSSGTGEKPFKCVECGKGFSRRSALNVHHK-LHTGEKPSGP 43
Score = 26.3 bits (59), Expect = 0.21
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 5 TYLKVHNRVHLGLKPYGC 22
+ L VH+++H G KP G
Sbjct: 26 SALNVHHKLHTGEKPSGP 43
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 33.2 bits (77), Expect = 5e-04
Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCE 52
G KP+ C CG+ F L H+ +H+ K
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATHQ-RIHTGEKPSGPS 44
Score = 26.7 bits (60), Expect = 0.16
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 5 TYLKVHNRVHLGLKPYGCE 23
+ L H R+H G KP G
Sbjct: 26 SQLATHQRIHTGEKPSGPS 44
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 33.2 bits (77), Expect = 5e-04
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCE 52
G KPY C CG+ F + L H+ +H+ +
Sbjct: 3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHR-RIHTGYRPSGPS 44
Score = 25.1 bits (56), Expect = 0.62
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 5 TYLKVHNRVHLGLKPYGCE 23
T+L H R+H G +P G
Sbjct: 26 THLNEHRRIHTGYRPSGPS 44
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 33.2 bits (77), Expect = 5e-04
Identities = 12/42 (28%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQC 51
G+KPY C CG+ FR L H H+
Sbjct: 3 SGSSGTGMKPYVCNECGKAFRSKSYLIIHT-RTHTGESGPSS 43
Score = 26.3 bits (59), Expect = 0.21
Identities = 6/18 (33%), Positives = 8/18 (44%)
Query: 5 TYLKVHNRVHLGLKPYGC 22
+YL +H R H G
Sbjct: 26 SYLIIHTRTHTGESGPSS 43
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 33.2 bits (77), Expect = 5e-04
Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCE 52
G KPY C CG+ F Q L H+ +H+ K
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRG-IHTGEKPSGPS 44
Score = 25.5 bits (57), Expect = 0.42
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 5 TYLKVHNRVHLGLKPYGCE 23
++L H +H G KP G
Sbjct: 26 SHLVRHRGIHTGEKPSGPS 44
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 33.2 bits (77), Expect = 5e-04
Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCE 52
G KPY C CG+ F Q L H+ +H+ K
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHR-GIHTGEKPSGPS 44
Score = 25.9 bits (58), Expect = 0.38
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 5 TYLKVHNRVHLGLKPYGCE 23
++L H +H G KP G
Sbjct: 26 SHLARHRGIHTGEKPSGPS 44
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 33.3 bits (77), Expect = 5e-04
Identities = 8/29 (27%), Positives = 11/29 (37%)
Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYH 38
G K + C CG+ F + L H
Sbjct: 3 SGSSGTGGKHFECTECGKAFTRKSTLSMH 31
Score = 26.3 bits (59), Expect = 0.26
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 5 TYLKVHNRVHLGLKPYGCE 23
+ L +H ++H G KP G
Sbjct: 26 STLSMHQKIHTGEKPSGPS 44
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.9 bits (76), Expect = 5e-04
Identities = 8/29 (27%), Positives = 11/29 (37%)
Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYH 38
G + Y C CG+ F + L H
Sbjct: 3 SGSSGTGERHYECSECGKAFARKSTLIMH 31
Score = 25.9 bits (58), Expect = 0.35
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 5 TYLKVHNRVHLGLKPYGC 22
+ L +H R+H G KP G
Sbjct: 26 STLIMHQRIHTGEKPSGP 43
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.9 bits (76), Expect = 6e-04
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYH 38
G KPY C CG+ F + L H
Sbjct: 3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIH 31
Score = 26.3 bits (59), Expect = 0.21
Identities = 5/18 (27%), Positives = 9/18 (50%)
Query: 5 TYLKVHNRVHLGLKPYGC 22
+ L +H + H G + G
Sbjct: 26 SGLHIHQQSHTGERHSGP 43
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 32.9 bits (76), Expect = 6e-04
Identities = 11/42 (26%), Positives = 14/42 (33%), Gaps = 1/42 (2%)
Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQC 51
G KP+ C+ CG +F L H S H
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRS-HERTDPSGP 43
Score = 24.5 bits (54), Expect = 1.3
Identities = 6/16 (37%), Positives = 6/16 (37%)
Query: 7 LKVHNRVHLGLKPYGC 22
L H R H P G
Sbjct: 28 LFKHLRSHERTDPSGP 43
Score = 22.2 bits (48), Expect = 8.3
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 41 SLHSDVKAFQCEYCGKDFARK 61
S + K FQC+ CG +F+
Sbjct: 5 SSGTGEKPFQCKECGMNFSWS 25
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.9 bits (76), Expect = 6e-04
Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCE 52
G KPY C CG+ F Q L H+ +H+ K
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHR-RVHTGGKPSGPS 44
Score = 25.9 bits (58), Expect = 0.30
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 5 TYLKVHNRVHLGLKPYGCE 23
++L H RVH G KP G
Sbjct: 26 SHLARHRRVHTGGKPSGPS 44
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 32.9 bits (76), Expect = 6e-04
Identities = 8/29 (27%), Positives = 10/29 (34%)
Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYH 38
G+ PY C C + F L H
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVH 31
Score = 27.1 bits (61), Expect = 0.098
Identities = 8/18 (44%), Positives = 9/18 (50%)
Query: 5 TYLKVHNRVHLGLKPYGC 22
L VH R+H KP G
Sbjct: 26 LRLLVHQRMHTREKPSGP 43
Score = 22.5 bits (49), Expect = 7.5
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 41 SLHSDVKAFQCEYCGKDFARKYQ 63
S + V ++C C K F+ K +
Sbjct: 5 SSGAGVNPYKCSQCEKSFSGKLR 27
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 44
Score = 32.9 bits (76), Expect = 6e-04
Identities = 12/42 (28%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQC 51
G KPY C CG+ F L H+ + H+ V
Sbjct: 3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERT-HAGVSGPSS 43
Score = 24.4 bits (54), Expect = 1.3
Identities = 6/18 (33%), Positives = 8/18 (44%)
Query: 5 TYLKVHNRVHLGLKPYGC 22
+ L VH R H G+
Sbjct: 26 SLLIVHERTHAGVSGPSS 43
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 32.9 bits (76), Expect = 7e-04
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQC 51
G KP+ C CG+ + Q L H+ +H+ K
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQ-RVHTGEKPSGP 43
Score = 25.2 bits (56), Expect = 0.60
Identities = 9/18 (50%), Positives = 10/18 (55%)
Query: 5 TYLKVHNRVHLGLKPYGC 22
+L H RVH G KP G
Sbjct: 26 VHLTQHQRVHTGEKPSGP 43
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 32.9 bits (76), Expect = 7e-04
Identities = 12/42 (28%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQC 51
G KP C CG+ F L H+ + H D K
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRT-HVDDKHSGP 43
Score = 26.8 bits (60), Expect = 0.18
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 5 TYLKVHNRVHLGLKPYGC 22
+ L +H R H+ K G
Sbjct: 26 SQLIMHQRTHVDDKHSGP 43
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 32.9 bits (76), Expect = 7e-04
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQC 51
G +P+ C CG+ F + L H LHS K+
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGHL-RLHSREKSSGP 43
Score = 26.3 bits (59), Expect = 0.23
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 5 TYLKVHNRVHLGLKPYGC 22
++L H R+H K G
Sbjct: 26 SHLAGHLRLHSREKSSGP 43
Score = 22.9 bits (50), Expect = 5.6
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 41 SLHSDVKAFQCEYCGKDFARK 61
S S + F+C CGK F R+
Sbjct: 5 SSGSGERPFKCNECGKGFGRR 25
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.9 bits (76), Expect = 7e-04
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCE 52
G KPY C+ C + F Q G L HK +H+ ++
Sbjct: 3 SGSSGSGKKPYECKECRKTFIQIGHLNQHK-RVHTGERSSGPS 44
Score = 26.0 bits (58), Expect = 0.32
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 5 TYLKVHNRVHLGLKPYGCE 23
+L H RVH G + G
Sbjct: 26 GHLNQHKRVHTGERSSGPS 44
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 32.6 bits (75), Expect = 8e-04
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHK 39
G K + C+ CG++F L+ H+
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQ 32
Score = 26.0 bits (58), Expect = 0.29
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 7 LKVHNRVHLGLKPYGCE 23
L++H RVH+G K G
Sbjct: 28 LRIHQRVHMGEKCSGPS 44
Score = 22.9 bits (50), Expect = 4.7
Identities = 10/29 (34%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 41 SLHSDVKAFQCEYCGKDFARKYQAHSYHQ 69
S S K+ C+ CGK+F HQ
Sbjct: 5 SSGSGEKSHTCDECGKNFCYISALRI-HQ 32
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 32.5 bits (75), Expect = 8e-04
Identities = 7/29 (24%), Positives = 11/29 (37%)
Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYH 38
G + + C CG+ F Q + H
Sbjct: 3 SGSSGHGERGHRCSDCGKFFLQASNFIQH 31
Score = 25.6 bits (57), Expect = 0.40
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 5 TYLKVHNRVHLGLKPYGC 22
+ H R+H G KP G
Sbjct: 26 SNFIQHRRIHTGEKPSGP 43
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 34.8 bits (79), Expect = 8e-04
Identities = 10/41 (24%), Positives = 10/41 (24%), Gaps = 1/41 (2%)
Query: 8 KVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKA 48
Y C VC DL H AS H
Sbjct: 169 VGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVAS-HGLHGN 208
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 32.5 bits (75), Expect = 0.001
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYH 38
G +P+ C CG+ F Q L H
Sbjct: 3 SGSSGTGERPHKCNECGKSFIQSAHLIQH 31
Score = 25.9 bits (58), Expect = 0.37
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 5 TYLKVHNRVHLGLKPYGCE 23
+L H R+H G KP G
Sbjct: 26 AHLIQHQRIHTGEKPSGPS 44
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 32.1 bits (74), Expect = 0.001
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYH 38
G KPY C+ CG+ F Q L H
Sbjct: 3 SGSSGTGEKPYECKECGKAFSQTTHLIQH 31
Score = 25.9 bits (58), Expect = 0.35
Identities = 10/18 (55%), Positives = 11/18 (61%)
Query: 5 TYLKVHNRVHLGLKPYGC 22
T+L H RVH G KP G
Sbjct: 26 THLIQHQRVHTGEKPSGP 43
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 32.2 bits (74), Expect = 0.001
Identities = 8/30 (26%), Positives = 11/30 (36%)
Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHK 39
K Y C CG+ F + L H+
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQ 32
Score = 22.5 bits (49), Expect = 5.6
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 43 HSDVKAFQCEYCGKDFARKY 62
+D K++ C CGK F R +
Sbjct: 7 GTDSKSYNCNECGKAFTRIF 26
>2epa_A Krueppel-like factor 10; transforming growth
factor-beta-inducible early growth response protein 1,
TGFB-inducible early growth response protein 1; NMR
{Homo sapiens}
Length = 72
Score = 32.7 bits (75), Expect = 0.001
Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 5/58 (8%)
Query: 7 LKVHNRVHLGLKPYGCEV--CGRHFRQWGDLKYHKASLHSDVKAFQCEY--CGKDFAR 60
++ + C CG+ + + LK H + H+ K F C + C + FAR
Sbjct: 5 SSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRT-HTGEKPFSCSWKGCERRFAR 61
Score = 30.4 bits (69), Expect = 0.010
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 3 KFTYLKVHNRVHLGLKPYGCEV--CGRHFRQWGDLKYHK 39
K ++LK H R H G KP+ C C R F + +L H+
Sbjct: 31 KSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHR 69
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.1 bits (74), Expect = 0.001
Identities = 9/29 (31%), Positives = 11/29 (37%)
Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYH 38
G KP+ C CG+ F L H
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVH 31
Score = 26.0 bits (58), Expect = 0.26
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 5 TYLKVHNRVHLGLKPYGC 22
+ L VH R+H G P G
Sbjct: 26 SQLIVHQRIHTGENPSGP 43
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 31.6 bits (71), Expect = 0.002
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 5 TYLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKAS 41
+ LK H R H ++PY C C F+ G+L H S
Sbjct: 15 SMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS 51
Score = 29.3 bits (65), Expect = 0.024
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 20 YGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYQAHSYHQI 70
Y CE CG ++ LK H + H+DV+ + C YC F K + +
Sbjct: 2 YICEECGIRXKKPSMLKKHIRT-HTDVRPYHCTYCNFSFKTKGNLTKHMKS 51
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 31.2 bits (71), Expect = 0.003
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYH 38
R G+KP+ C C R F + L H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALH 30
Score = 24.6 bits (54), Expect = 0.78
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 43 HSDVKAFQCEYCGKDFAR 60
+ +K FQC C + F+R
Sbjct: 6 STGIKPFQCPDCDRSFSR 23
>3iyl_X VP3; non-enveloped virus, membrane penetration protein, autocleav
myristol group, icosahedral virus; HET: MYR; 3.30A
{Grass carp reovirus} PDB: 3k1q_C 3k1q_B
Length = 1214
Score = 32.9 bits (74), Expect = 0.004
Identities = 10/31 (32%), Positives = 11/31 (35%)
Query: 18 KPYGCEVCGRHFRQWGDLKYHKASLHSDVKA 48
Y C VC F L H S H D +
Sbjct: 115 SSYVCNVCNARFSTMSALSEHLRSDHRDDAS 145
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 30.6 bits (70), Expect = 0.005
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 12 RVHLGLKPYGCEVCGRHFRQWGDLKYH 38
G + Y C+ CG+ FRQ G L H
Sbjct: 3 SGSSGQRVYECQECGKSFRQKGSLTLH 29
Score = 22.5 bits (49), Expect = 6.0
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 5 TYLKVHNRVHLGLKPY 20
L +H R+H G P
Sbjct: 24 GSLTLHERIHTGSGPS 39
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 30.2 bits (69), Expect = 0.007
Identities = 11/42 (26%), Positives = 14/42 (33%), Gaps = 1/42 (2%)
Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQC 51
G PY C CG+ F + L H+ HS
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSHQ-KTHSGQSGPSS 43
Score = 23.2 bits (51), Expect = 3.1
Identities = 4/18 (22%), Positives = 5/18 (27%)
Query: 5 TYLKVHNRVHLGLKPYGC 22
L H + H G
Sbjct: 26 DQLVSHQKTHSGQSGPSS 43
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC),
C2H2, APO metal-binding, nucleus, phosphoprotein,
transcription, TRAN regulation; 1.80A {Homo sapiens}
Length = 48
Score = 30.1 bits (67), Expect = 0.008
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 18 KPYGCEVCGRHFRQWGDLKYHKASLHSD 45
KPY C++CG+ ++ L YH A H
Sbjct: 6 KPYACDICGKRYKNRPGLSYHYAHSHLA 33
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 31.1 bits (70), Expect = 0.009
Identities = 12/58 (20%), Positives = 15/58 (25%), Gaps = 8/58 (13%)
Query: 13 VHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYC--------GKDFARKY 62
+ + C R F +L H H C GK F KY
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKY 76
Score = 25.7 bits (56), Expect = 0.80
Identities = 7/16 (43%), Positives = 7/16 (43%)
Query: 7 LKVHNRVHLGLKPYGC 22
L H RVH G K
Sbjct: 78 LVNHIRVHTGEKSGPS 93
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 29.8 bits (68), Expect = 0.011
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 11 NRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQC 51
+ G KP+GC C + F L H+ + H++ K
Sbjct: 2 SSGSSGEKPFGCSCCEKAFSSKSYLLVHQQT-HAEEKPSGP 41
Score = 29.0 bits (66), Expect = 0.018
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 5 TYLKVHNRVHLGLKPYGC 22
+YL VH + H KP G
Sbjct: 24 SYLLVHQQTHAEEKPSGP 41
Score = 25.2 bits (56), Expect = 0.52
Identities = 9/23 (39%), Positives = 10/23 (43%)
Query: 41 SLHSDVKAFQCEYCGKDFARKYQ 63
S S K F C C K F+ K
Sbjct: 3 SGSSGEKPFGCSCCEKAFSSKSY 25
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 29.5 bits (65), Expect = 0.037
Identities = 14/52 (26%), Positives = 19/52 (36%), Gaps = 2/52 (3%)
Query: 18 KPYGCEVCGRHFRQ-WGDLKYHKASLHSDVKAFQCEYCGKDFARKYQAHSYH 68
C C R+ LK H A +C++C K F K +YH
Sbjct: 23 GEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKA-GLNYH 73
Score = 26.1 bits (56), Expect = 0.83
Identities = 12/39 (30%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 7 LKVHNRV-HLGLKPYGCEVCGRHFRQWGDLKYHKASLHS 44
LK H V C+ C + F+ L YH + HS
Sbjct: 41 LKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHS 79
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 29.4 bits (65), Expect = 0.043
Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 4/65 (6%)
Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKA---FQCEYCGKDFARKYQAHS 66
+ + Y C+ C +H S H +V + C C ++Y A S
Sbjct: 9 NQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFL-TKRYDALS 67
Query: 67 YHQIR 71
H ++
Sbjct: 68 EHNLK 72
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 27.9 bits (63), Expect = 0.051
Identities = 10/40 (25%), Positives = 14/40 (35%), Gaps = 1/40 (2%)
Query: 12 RVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQC 51
G PY C CG+ F + L H+ H+
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQLISHQR-THAGESGPSS 41
Score = 25.2 bits (56), Expect = 0.68
Identities = 5/18 (27%), Positives = 5/18 (27%)
Query: 5 TYLKVHNRVHLGLKPYGC 22
L H R H G
Sbjct: 24 DQLISHQRTHAGESGPSS 41
Score = 22.5 bits (49), Expect = 6.8
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 41 SLHSDVKAFQCEYCGKDFARK 61
S S ++C CGK F RK
Sbjct: 3 SGSSGENPYECSECGKAFNRK 23
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 26.9 bits (60), Expect = 0.14
Identities = 9/28 (32%), Positives = 10/28 (35%)
Query: 11 NRVHLGLKPYGCEVCGRHFRQWGDLKYH 38
+ G KPY C C F L H
Sbjct: 2 SSGSSGEKPYSCAECKETFSDNNRLVQH 29
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 26.4 bits (58), Expect = 0.26
Identities = 9/30 (30%), Positives = 11/30 (36%)
Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHK 39
G P+ C C R F Q L H+
Sbjct: 3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHE 32
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif,
transcription regulation, zinc-finger; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 47
Score = 25.2 bits (55), Expect = 0.57
Identities = 10/25 (40%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Query: 47 KAFQCEY--CGKDFARKYQAHSYHQ 69
K F+C + C K F R+Y S+ Q
Sbjct: 17 KTFECLFPGCTKTFKRRYNIRSHIQ 41
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 25.2 bits (54), Expect = 0.74
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 18 KPYGCEVCGRHFRQWGDLKYHK 39
K + C CG F Q+ L H+
Sbjct: 11 KSHQCRECGEIFFQYVSLIEHQ 32
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 24.9 bits (53), Expect = 0.82
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 14 HLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDV 46
G KPY C VCG F++ + YH S V
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSV 37
Score = 23.7 bits (50), Expect = 3.2
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 40 ASLHSDVKAFQCEYCGKDFARK 61
+S S K + C CG F RK
Sbjct: 2 SSGSSGEKPYSCPVCGLRFKRK 23
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic
acid binding, KIAA1227 protein, structural genomics;
NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 25.6 bits (55), Expect = 0.92
Identities = 8/41 (19%), Positives = 14/41 (34%), Gaps = 2/41 (4%)
Query: 22 CEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKY 62
C C F + H++ + K C C + F +
Sbjct: 45 CPYCSLRFFSPELKQEHES--KCEYKKLTCLECMRTFKSSF 83
Score = 25.6 bits (55), Expect = 1.2
Identities = 9/42 (21%), Positives = 15/42 (35%)
Query: 3 KFTYLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHS 44
LK + K C C R F+ + H+ +H+
Sbjct: 53 FSPELKQEHESKCEYKKLTCLECMRTFKSSFSIWRHQVEVHN 94
Score = 24.9 bits (53), Expect = 2.1
Identities = 9/43 (20%), Positives = 14/43 (32%), Gaps = 3/43 (6%)
Query: 16 GLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDF 58
+ Y C +C + H+ + A C YC F
Sbjct: 13 NKEVYQCRLCNAKLSSLLEQGSHERLCRN---AAVCPYCSLRF 52
>3llk_A Sulfhydryl oxidase 1; disulfide, flavin adenine dinucleotide,
alternative splicing, FAD, flavoprotein, glycoprotein,
GOLG apparatus, membrane; HET: FAD FLC; 2.00A {Homo
sapiens} PDB: 3lli_A*
Length = 261
Score = 25.8 bits (56), Expect = 1.2
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 20 YGCEVCGRHFRQW 32
+GC C HF Q
Sbjct: 162 FGCRDCASHFEQM 174
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 30
Score = 24.0 bits (52), Expect = 1.4
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 18 KPYGCEVCGRHFRQWGDLKYHKASLHS 44
K Y C +C R F + L H +HS
Sbjct: 1 KAYACGLCNRAFTRRDLLIRHAQKIHS 27
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 25.2 bits (54), Expect = 1.5
Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 7 LKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAF 49
LK H + + C CG+ R +KYH + H+ + +
Sbjct: 51 LKKHMENC-KQEMFTCHHCGKQLRSLAGMKYHVMANHNSLPSG 92
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 23.8 bits (52), Expect = 1.7
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 18 KPYGCEVCGRHFRQWGDLKYH 38
+ + CEVC R F + LK H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRH 21
>1pg5_B Aspartate carbamoyltransferase regulatory chain; 2.60A {Sulfolobus
acidocaldarius} SCOP: d.58.2.1 g.41.7.1 PDB: 2be9_B*
Length = 168
Score = 25.1 bits (55), Expect = 2.0
Identities = 5/20 (25%), Positives = 6/20 (30%)
Query: 42 LHSDVKAFQCEYCGKDFARK 61
L +CEYC
Sbjct: 137 LTEKPLKMRCEYCETIIDEN 156
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 23.3 bits (49), Expect = 3.0
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 44 SDVKAFQCEYCGKDFARKY 62
S K F CEYC K F K+
Sbjct: 5 SSGKIFTCEYCNKVFKFKH 23
>2air_B Aspartate carbamoyltransferase regulatory chain; aspartate
transcarbamylase, alanosine, carbamyl phosphate, T
transferase; HET: AL0; 2.00A {Escherichia coli} SCOP:
d.58.2.1 g.41.7.1 PDB: 1ezz_B 1f1b_B* 1i5o_B* 1q95_G*
1r0b_G* 1r0c_B* 1raa_B* 1rab_B* 1rac_B* 1rad_B* 1rae_B*
1raf_B* 1rag_B* 1rah_B* 1rai_B* 1sku_B 1tth_B* 1tu0_B
1tug_B* 1xjw_B* ...
Length = 153
Score = 24.7 bits (54), Expect = 3.1
Identities = 5/13 (38%), Positives = 9/13 (69%)
Query: 49 FQCEYCGKDFARK 61
+C+YC K+F+
Sbjct: 136 LKCKYCEKEFSHN 148
>2yev_B Cytochrome C oxidase subunit 2; electron transport; HET: FME 5PL
HAS 4AG 7E8 HEC 7E9; 2.36A {Thermus thermophilus}
Length = 337
Score = 24.3 bits (53), Expect = 3.5
Identities = 6/12 (50%), Positives = 6/12 (50%), Gaps = 1/12 (8%)
Query: 50 QC-EYCGKDFAR 60
C E CG AR
Sbjct: 196 FCAELCGASHAR 207
>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus
musculus} PDB: 3t59_A*
Length = 519
Score = 24.5 bits (52), Expect = 3.9
Identities = 5/12 (41%), Positives = 6/12 (50%)
Query: 20 YGCEVCGRHFRQ 31
+GC HF Q
Sbjct: 419 FGCRDSADHFEQ 430
>2be7_D Aspartate carbamoyltransferase regulatory chain; atcase,
psychrophilic, cold adaptation, alloste holoenzyme;
2.85A {Moritella profunda}
Length = 153
Score = 24.3 bits (53), Expect = 4.2
Identities = 5/13 (38%), Positives = 9/13 (69%)
Query: 49 FQCEYCGKDFARK 61
+C+YC K F++
Sbjct: 135 LKCKYCEKTFSKD 147
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 22.9 bits (48), Expect = 5.1
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 18 KPYGCEVCGRHFRQWGDLKYHKASLHSD 45
K + C++CG+ F+ G LK HK +D
Sbjct: 8 KTHLCDMCGKKFKSKGTLKSHKLLHTAD 35
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc
finger, classical zinc finger, transcription; NMR {Homo
sapiens}
Length = 30
Score = 22.4 bits (47), Expect = 5.9
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 17 LKPYGCEVCGRHFRQWGDLKYH 38
+KPY C C R F G L+ H
Sbjct: 1 MKPYVCIHCQRQFADPGALQRH 22
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 28
Score = 22.4 bits (47), Expect = 6.1
Identities = 7/25 (28%), Positives = 17/25 (68%)
Query: 46 VKAFQCEYCGKDFARKYQAHSYHQI 70
++ + C CGK F+ K+Q +++++
Sbjct: 1 MRPYSCSVCGKRFSLKHQMETHYRV 25
>1q16_B Respiratory nitrate reductase 1 beta chain; membrane protein,
electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA
3PH; 1.90A {Escherichia coli} SCOP: d.58.1.5 PDB:
1r27_B* 1siw_B* 1y5i_B* 1y5l_B* 1y5n_B* 3ir5_B* 3ir6_B*
3ir7_B* 1y4z_B* 3egw_B*
Length = 512
Score = 23.8 bits (51), Expect = 6.4
Identities = 8/26 (30%), Positives = 9/26 (34%)
Query: 12 RVHLGLKPYGCEVCGRHFRQWGDLKY 37
R+ G E C R G L Y
Sbjct: 250 RIEAGQPTVCSETCVGRIRYLGVLLY 275
>2yww_A Aspartate carbamoyltransferase regulatory chain; ATP complex,
structural genomics, NPPSFA; HET: ATP; 2.00A
{Methanocaldococcus jannaschii}
Length = 149
Score = 23.5 bits (51), Expect = 8.0
Identities = 4/12 (33%), Positives = 5/12 (41%)
Query: 49 FQCEYCGKDFAR 60
+C YC K
Sbjct: 134 IRCYYCEKFLNE 145
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.328 0.140 0.482
Gapped
Lambda K H
0.267 0.0443 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,120,523
Number of extensions: 49030
Number of successful extensions: 837
Number of sequences better than 10.0: 1
Number of HSP's gapped: 723
Number of HSP's successfully gapped: 445
Length of query: 71
Length of database: 6,701,793
Length adjustment: 41
Effective length of query: 30
Effective length of database: 5,557,032
Effective search space: 166710960
Effective search space used: 166710960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 51 (24.1 bits)