RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12265
(71 letters)
>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 38.4 bits (90), Expect = 1e-06
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 12 RVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSD 45
R H G KPY C +C F Q G +K H H++
Sbjct: 1 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTE 34
Score = 24.2 bits (53), Expect = 0.52
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 43 HSDVKAFQCEYCGKDFARK 61
HS K ++C C F +
Sbjct: 3 HSGEKPYECYICHARFTQS 21
>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 37.7 bits (88), Expect = 3e-06
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 18 KPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCE 52
KPY C+ CG+ F + L H +H+ + +C+
Sbjct: 4 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQ 38
Score = 23.4 bits (51), Expect = 1.00
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 47 KAFQCEYCGKDFARKYQAHSYHQ 69
K + C+ CGK F+R + + +
Sbjct: 4 KPYICQSCGKGFSRPDHLNGHIK 26
Score = 23.0 bits (50), Expect = 1.5
Identities = 7/21 (33%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
Query: 5 TYLKVHNR-VHLGLKPYGCEV 24
+L H + VH +P+ C+V
Sbjct: 19 DHLNGHIKQVHTSERPHKCQV 39
>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 33
Score = 33.4 bits (77), Expect = 1e-04
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 13 VHLGLKPYGCEVCGRHFRQWGDLKYHK 39
+H G KPYGC CG+ F + L H+
Sbjct: 1 IHSGEKPYGCVECGKAFSRSSILVQHQ 27
Score = 24.5 bits (54), Expect = 0.35
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 43 HSDVKAFQCEYCGKDFARK 61
HS K + C CGK F+R
Sbjct: 2 HSGEKPYGCVECGKAFSRS 20
>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 33.1 bits (76), Expect = 1e-04
Identities = 13/28 (46%), Positives = 14/28 (50%)
Query: 12 RVHLGLKPYGCEVCGRHFRQWGDLKYHK 39
R H G KPY C C + FRQ L H
Sbjct: 1 RTHTGEKPYACSHCDKTFRQKQLLDMHF 28
Score = 23.5 bits (51), Expect = 1.0
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 43 HSDVKAFQCEYCGKDFARK 61
H+ K + C +C K F +K
Sbjct: 3 HTGEKPYACSHCDKTFRQK 21
>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 37
Score = 32.8 bits (75), Expect = 2e-04
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHK 39
R G+KP+ C C R F + L H+
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHR 31
>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing
protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId:
9606]}
Length = 38
Score = 31.3 bits (71), Expect = 9e-04
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHK 39
+ Y C+ CG+ F DL H+
Sbjct: 3 SEWQQRERRRYKCDECGKSFSHSSDLSKHR 32
>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 29.5 bits (67), Expect = 0.004
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 18 KPYGCEVCGRHFRQWGDLKYHK 39
KP+ C +C R+F + L H
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHI 23
Score = 21.8 bits (47), Expect = 3.3
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 47 KAFQCEYCGKDFARK 61
K FQC C ++F+R
Sbjct: 2 KPFQCRICMRNFSRS 16
>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 29
Score = 29.1 bits (66), Expect = 0.005
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 18 KPYGCEVCGRHFRQWGDLKYHK 39
+ + CEVC R F + LK H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHY 22
Score = 22.2 bits (48), Expect = 2.2
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 47 KAFQCEYCGKDFARK 61
++F CE C + FAR+
Sbjct: 1 RSFVCEVCTRAFARQ 15
>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 35
Score = 29.0 bits (65), Expect = 0.008
Identities = 6/26 (23%), Positives = 10/26 (38%)
Query: 14 HLGLKPYGCEVCGRHFRQWGDLKYHK 39
G +P+ C +C F + H
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHL 27
Score = 21.6 bits (46), Expect = 4.3
Identities = 6/28 (21%), Positives = 10/28 (35%)
Query: 43 HSDVKAFQCEYCGKDFARKYQAHSYHQI 70
S + F C C F K + ++
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKV 29
>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 29
Score = 28.5 bits (64), Expect = 0.009
Identities = 6/22 (27%), Positives = 9/22 (40%)
Query: 18 KPYGCEVCGRHFRQWGDLKYHK 39
K + C C + F + L H
Sbjct: 1 KKFACPECPKRFMRSDHLSKHI 22
Score = 20.8 bits (44), Expect = 7.5
Identities = 7/15 (46%), Positives = 7/15 (46%)
Query: 47 KAFQCEYCGKDFARK 61
K F C C K F R
Sbjct: 1 KKFACPECPKRFMRS 15
>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 53
Score = 28.9 bits (64), Expect = 0.011
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 18 KPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYQ 63
K Y C+ CG+ F H + H ++ + C CGK F K+
Sbjct: 2 KLYPCQ-CGKSFTHKSQRDRHMSM-HLGLRPYGCGVCGKKFKMKHH 45
Score = 25.0 bits (54), Expect = 0.39
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 5 TYLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHK 39
+ H +HLGL+PYGC VCG+ F+ L H
Sbjct: 16 SQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHM 50
>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 26
Score = 27.2 bits (61), Expect = 0.027
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 18 KPYGCEVCGRHFRQWGDLKYHK 39
KPY C CG+ F Q L H+
Sbjct: 1 KPYKCLECGKAFSQNSGLINHQ 22
>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 24.7 bits (54), Expect = 0.28
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 22 CEVCGRHFRQWGDLKYHKASLHSDVKAFQCEY 53
CG+ F LK H HSD + + CE+
Sbjct: 6 EPACGKSFNFKKHLKEHMKL-HSDTRDYICEF 36
Score = 24.7 bits (54), Expect = 0.29
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 5 TYLKVHNRVHLGLKPYGCE 23
+LK H ++H + Y CE
Sbjct: 17 KHLKEHMKLHSDTRDYICE 35
>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 30
Score = 23.8 bits (52), Expect = 0.62
Identities = 8/24 (33%), Positives = 13/24 (54%), Gaps = 2/24 (8%)
Query: 18 KPYGC--EVCGRHFRQWGDLKYHK 39
KP+ C E C + + + +LK H
Sbjct: 1 KPHKCTFEGCRKSYSRLENLKTHL 24
>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 23.6 bits (51), Expect = 0.71
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 18 KPYGCEVCGRHFRQWGDLKYH 38
KP+ C++CGR F + + K H
Sbjct: 2 KPFACDICGRKFARSDERKRH 22
Score = 22.5 bits (48), Expect = 2.0
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 47 KAFQCEYCGKDFAR 60
K F C+ CG+ FAR
Sbjct: 2 KPFACDICGRKFAR 15
>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 35
Score = 23.9 bits (51), Expect = 0.77
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 18 KPYGCEVCGRHFRQWGDLKYHKASLHSDVKAF 49
K CE+CG+ FR L HK S HS K +
Sbjct: 4 KQVACEICGKIFRDVYHLNRHKLS-HSGEKPY 34
>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 44
Score = 23.9 bits (51), Expect = 0.78
Identities = 9/19 (47%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
Query: 16 GLKPYGCEVCGRHFRQWGD 34
G+KPY C +C + F W D
Sbjct: 2 GIKPYECNICAKRF-MWRD 19
>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 31
Score = 23.4 bits (51), Expect = 0.89
Identities = 8/24 (33%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
Query: 18 KPYGCEV--CGRHFRQWGDLKYHK 39
+P+ C CG+ F + +L+ HK
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHK 24
>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 26
Score = 23.2 bits (49), Expect = 0.93
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 19 PYGCEVCGRHFRQWGDLKYHKASLH 43
PY C C + F Q DL+ H LH
Sbjct: 2 PYKCSSCSQQFMQKKDLQSHMIKLH 26
>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 32
Score = 23.1 bits (50), Expect = 1.1
Identities = 9/24 (37%), Positives = 13/24 (54%), Gaps = 2/24 (8%)
Query: 18 KPYGCEV--CGRHFRQWGDLKYHK 39
+PY C+ C + F + DL HK
Sbjct: 2 RPYSCDHPGCDKAFVRNHDLIRHK 25
>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 29
Score = 22.7 bits (49), Expect = 1.5
Identities = 10/24 (41%), Positives = 12/24 (50%), Gaps = 2/24 (8%)
Query: 18 KPYGC--EVCGRHFRQWGDLKYHK 39
+PY C E C R F + DL H
Sbjct: 1 RPYACPVESCDRRFSRSADLTRHI 24
>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 37
Score = 22.4 bits (47), Expect = 2.3
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 48 AFQCEYCGKDFARK 61
AF C CGK F R+
Sbjct: 4 AFVCSKCGKTFTRR 17
>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger
domain) {Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 21.9 bits (47), Expect = 2.7
Identities = 8/24 (33%), Positives = 12/24 (50%), Gaps = 2/24 (8%)
Query: 18 KPYGCEV--CGRHFRQWGDLKYHK 39
KP+ C CG+ F +L+ H
Sbjct: 1 KPFQCTFEGCGKRFSLDFNLRTHV 24
>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 32
Score = 21.9 bits (46), Expect = 3.7
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 18 KPYGCEVCGRHFRQWGDLKYHKAS 41
KPY C VCG F++ + YH S
Sbjct: 2 KPYSCPVCGLRFKRKDRMSYHVRS 25
>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 47
Score = 21.8 bits (46), Expect = 5.0
Identities = 4/32 (12%), Positives = 12/32 (37%), Gaps = 2/32 (6%)
Query: 10 HNRVHLGLKPYGCEVC--GRHFRQWGDLKYHK 39
+ K + C + F++ +++ H
Sbjct: 9 KYVKEMPDKTFECLFPGCTKTFKRRYNIRSHI 40
>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 31
Score = 21.3 bits (45), Expect = 5.3
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 19 PYGCEVCGRHFRQWGDLKYHKASLHS 44
PY C +C R F + L H +HS
Sbjct: 1 PYPCGLCNRAFTRRDLLIRHAQKIHS 26
>d1sddb3 b.18.1.2 (B:1863-2024) C2 domain of factor V {Cow (Bos
taurus) [TaxId: 9913]}
Length = 162
Score = 22.5 bits (47), Expect = 7.0
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 10 HNRVHLGLKPYGCEVCG 26
+N+ L L+ GCEV G
Sbjct: 146 YNKPALRLELQGCEVNG 162
>d2fzcb2 g.41.7.1 (B:101-153) Aspartate carbamoyltransferase,
Regulatory-chain, C-terminal domain {Escherichia coli
[TaxId: 562]}
Length = 53
Score = 21.2 bits (45), Expect = 8.2
Identities = 5/12 (41%), Positives = 9/12 (75%)
Query: 50 QCEYCGKDFARK 61
+C+YC K+F+
Sbjct: 37 KCKYCEKEFSHN 48
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.328 0.140 0.482
Gapped
Lambda K H
0.267 0.0716 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 291,436
Number of extensions: 11303
Number of successful extensions: 158
Number of sequences better than 10.0: 1
Number of HSP's gapped: 156
Number of HSP's successfully gapped: 70
Length of query: 71
Length of database: 2,407,596
Length adjustment: 39
Effective length of query: 32
Effective length of database: 1,872,126
Effective search space: 59908032
Effective search space used: 59908032
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 47 (21.9 bits)