BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12266
(107 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OTB|A Chain A, Crystal Structure Of Human Trnahis Guanylyltransferase
(Thg1) - Dgtp Complex
pdb|3OTB|B Chain B, Crystal Structure Of Human Trnahis Guanylyltransferase
(Thg1) - Dgtp Complex
pdb|3OTC|A Chain A, Crystal Structure Of Human Trnahis Guanylyltransferase
(Thg1)- Native Ii
pdb|3OTC|B Chain B, Crystal Structure Of Human Trnahis Guanylyltransferase
(Thg1)- Native Ii
pdb|3OTD|A Chain A, Crystal Structure Of Human Trnahis Guanylyltransferase
(Thg1)- Nai Derivative
pdb|3OTD|B Chain B, Crystal Structure Of Human Trnahis Guanylyltransferase
(Thg1)- Nai Derivative
pdb|3OTE|A Chain A, Crystal Structure Of Human Trnahis Guanylyltransferase
(Thg1)- Native I
pdb|3OTE|B Chain B, Crystal Structure Of Human Trnahis Guanylyltransferase
(Thg1)- Native I
Length = 269
Score = 89.4 bits (220), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 39/67 (58%), Positives = 50/67 (74%)
Query: 35 MAKSKFEYVREFESHDRCLPNCFIVVRVDGKGFHKFTEAHGFDKPNDRSGLWLMSKAAAC 94
MAKSKFEYVR+FE+ D CL +C++VVR+DG+ FH+F E H F KPND L LM+K A
Sbjct: 1 MAKSKFEYVRDFEADDTCLAHCWVVVRLDGRNFHRFAEKHNFAKPNDSRALQLMTKCAQT 60
Query: 95 VIEEFNE 101
V+EE +
Sbjct: 61 VMEELED 67
>pdb|1SIJ|A Chain A, Crystal Structure Of The Aldehyde Dehydrogenase (A.K.A.
Aor Or Mop) Of Desulfovibrio Gigas Covalently Bound To
[aso3]-
pdb|1VLB|A Chain A, Structure Refinement Of The Aldehyde Oxidoreductase From
Desulfovibrio Gigas At 1.28 A
pdb|3FAH|A Chain A, Glycerol Inhibited Form Of Aldehyde Oxidoreductase From
Desulfovibrio Gigas
pdb|3FC4|A Chain A, Ethylene Glycol Inhibited Form Of Aldehyde Oxidoreductase
From Desulfovibrio Gigas
pdb|3L4P|A Chain A, Crystal Structure Of The Aldehyde Dehydrogenase (A.K.A.
Aor Or Mop) Of Desulfovibrio Gigas Covalently Bound To
[aso3]-
Length = 907
Score = 27.7 bits (60), Expect = 1.6, Method: Composition-based stats.
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 64 GKGFHKFTEAHGFDKPNDRSGLWLMSKAAAC 94
G G++ + E DKP +G W S A C
Sbjct: 723 GGGYYTYDELKAADKPTKITGNWTASGATHC 753
>pdb|1GWS|A Chain A, Hexadecaheme High Molecular Weight Cytochrome Hmc From
Desulfovibrio Vulgaris Hildenborough
pdb|2CVC|A Chain A, Crystal Structure Of High-Molecular Weight Cytochrome C
From Desulfovibrio Vulgaris (Hildenborough)
Length = 545
Score = 26.9 bits (58), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 36 AKSKFEYVREFESHDRCLPNCFIVVRVDGK 65
A++KF+ VRE DR P+ +++ V GK
Sbjct: 252 AQAKFKVVREVPRLDRGQPDAALILPVPGK 281
>pdb|2GP4|A Chain A, Structure Of [fes]cluster-free Apo Form Of
6-phosphogluconate Dehydratase From Shewanella
Oneidensis
pdb|2GP4|B Chain B, Structure Of [fes]cluster-free Apo Form Of
6-phosphogluconate Dehydratase From Shewanella
Oneidensis
Length = 628
Score = 26.9 bits (58), Expect = 2.8, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 73 AHGFD--KPNDRSGLWLMSKAAACVIEEFNEYKMVHK 107
AHGF P+D++ L ++KA +I FN+ H+
Sbjct: 66 AHGFAACNPDDKNALRQLTKANIGIITAFNDXLSAHQ 102
>pdb|1H29|A Chain A, Sulfate Respiration In Desulfovibrio Vulgaris
Hildenborough: Structure Of The 16-Heme Cytochrome C
Hmca At 2.5 A Resolution And A View Of Its Role In
Transmembrane Electron Transfer
pdb|1H29|B Chain B, Sulfate Respiration In Desulfovibrio Vulgaris
Hildenborough: Structure Of The 16-Heme Cytochrome C
Hmca At 2.5 A Resolution And A View Of Its Role In
Transmembrane Electron Transfer
pdb|1H29|C Chain C, Sulfate Respiration In Desulfovibrio Vulgaris
Hildenborough: Structure Of The 16-Heme Cytochrome C
Hmca At 2.5 A Resolution And A View Of Its Role In
Transmembrane Electron Transfer
pdb|1H29|D Chain D, Sulfate Respiration In Desulfovibrio Vulgaris
Hildenborough: Structure Of The 16-Heme Cytochrome C
Hmca At 2.5 A Resolution And A View Of Its Role In
Transmembrane Electron Transfer
Length = 514
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 36 AKSKFEYVREFESHDRCLPNCFIVVRVDGK 65
A++KF+ VRE DR P+ +++ V GK
Sbjct: 221 AQAKFKVVREVPRLDRGQPDAALILPVPGK 250
>pdb|3LOH|E Chain E, Structure Of The Insulin Receptor Ectodomain, Including Ct
P
Length = 917
Score = 25.8 bits (55), Expect = 5.9, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 6 FSTGVLQFCKLVARGELFTPKSHFSLACSM---AKSKFEYVREFESHDRCLPNCFIVVRV 62
FS F K++ R E + P L M ++ ++ V EF+ D C N + VV +
Sbjct: 475 FSYIRTSFDKILLRWEPYWPPDFRDLLGFMLFYKEAPYQNVTEFDGQDACGSNSWTVVDI 534
Query: 63 D 63
D
Sbjct: 535 D 535
>pdb|2DTG|E Chain E, Insulin Receptor (Ir) Ectodomain In Complex With Fab's
Length = 897
Score = 25.8 bits (55), Expect = 6.0, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 6 FSTGVLQFCKLVARGELFTPKSHFSLACSM---AKSKFEYVREFESHDRCLPNCFIVVRV 62
FS F K++ R E + P L M ++ ++ V EF+ D C N + VV +
Sbjct: 475 FSYIRTSFDKILLRWEPYWPPDFRDLLGFMLFYKEAPYQNVTEFDGQDACGSNSWTVVDI 534
Query: 63 D 63
D
Sbjct: 535 D 535
>pdb|3W14|E Chain E, Insulin Receptor Ectodomain Construct Comprising Domains
L1,cr,l2, Fniii-1 And Alphact Peptide In Complex With
Bovine Insulin And Fab 83-14
pdb|3W14|F Chain F, Insulin Receptor Ectodomain Construct Comprising Domains
L1,cr,l2, Fniii-1 And Alphact Peptide In Complex With
Bovine Insulin And Fab 83-14
Length = 609
Score = 25.8 bits (55), Expect = 6.5, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 6 FSTGVLQFCKLVARGELFTPKSHFSLACSM---AKSKFEYVREFESHDRCLPNCFIVVRV 62
FS F K++ R E + P L M ++ ++ V EF+ D C N + VV +
Sbjct: 475 FSYIRTSFDKILLRWEPYWPPDFRDLLGFMLFYKEAPYQNVTEFDGQDACGSNSWTVVDI 534
Query: 63 D 63
D
Sbjct: 535 D 535
>pdb|2PMT|A Chain A, Glutathione Transferase From Proteus Mirabilis
pdb|2PMT|B Chain B, Glutathione Transferase From Proteus Mirabilis
pdb|2PMT|C Chain C, Glutathione Transferase From Proteus Mirabilis
pdb|2PMT|D Chain D, Glutathione Transferase From Proteus Mirabilis
pdb|1PMT|A Chain A, Glutathione Transferase From Proteus Mirabilis
Length = 203
Score = 25.4 bits (54), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 24 TPKSHFSLACSMAKSKFEYVREFESHDRCL 53
TP+S+ + + KSKF Y+ + S +C+
Sbjct: 117 TPESYLPVVKNKLKSKFVYINDVLSKQKCV 146
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.138 0.440
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,283,807
Number of Sequences: 62578
Number of extensions: 115225
Number of successful extensions: 220
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 215
Number of HSP's gapped (non-prelim): 9
length of query: 107
length of database: 14,973,337
effective HSP length: 72
effective length of query: 35
effective length of database: 10,467,721
effective search space: 366370235
effective search space used: 366370235
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 45 (21.9 bits)