BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12266
(107 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9NWX6|THG1_HUMAN Probable tRNA(His) guanylyltransferase OS=Homo sapiens GN=THG1L
PE=1 SV=2
Length = 298
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 41/79 (51%), Positives = 55/79 (69%)
Query: 23 FTPKSHFSLACSMAKSKFEYVREFESHDRCLPNCFIVVRVDGKGFHKFTEAHGFDKPNDR 82
T + + L +MAKSKFEYVR+FE+ D CL +C++VVR+DG+ FH+F E H F KPND
Sbjct: 18 ITLRRYLRLGATMAKSKFEYVRDFEADDTCLAHCWVVVRLDGRNFHRFAEKHNFAKPNDS 77
Query: 83 SGLWLMSKAAACVIEEFNE 101
L LM+K A V+EE +
Sbjct: 78 RALQLMTKCAQTVMEELED 96
>sp|Q9CY52|THG1_MOUSE Probable tRNA(His) guanylyltransferase OS=Mus musculus GN=Thg1l
PE=1 SV=1
Length = 298
Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 41/71 (57%), Positives = 51/71 (71%)
Query: 31 LACSMAKSKFEYVREFESHDRCLPNCFIVVRVDGKGFHKFTEAHGFDKPNDRSGLWLMSK 90
L +MAKSKFEYVR FE D CLP+C++VVR+DG+ FH+F E H F KPND L LM+K
Sbjct: 26 LGVAMAKSKFEYVRNFEVQDTCLPHCWVVVRLDGRNFHRFAEEHNFAKPNDSRALHLMTK 85
Query: 91 AAACVIEEFNE 101
A V+EE +
Sbjct: 86 CAQTVMEELED 96
>sp|Q05B50|THG1_BOVIN Probable tRNA(His) guanylyltransferase OS=Bos taurus GN=THG1L PE=2
SV=1
Length = 298
Score = 93.2 bits (230), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 44/97 (45%), Positives = 63/97 (64%), Gaps = 1/97 (1%)
Query: 5 LFSTGVLQFCKLVARGELFTPKSHFSLACSMAKSKFEYVREFESHDRCLPNCFIVVRVDG 64
+++ G L+ +A + T + L +MAKSKFEYVR+FE+ D CLP+C++VVR+DG
Sbjct: 1 MWAAGALKVRDCLAATSV-TLRRCLKLGATMAKSKFEYVRDFEADDTCLPHCWVVVRLDG 59
Query: 65 KGFHKFTEAHGFDKPNDRSGLWLMSKAAACVIEEFNE 101
+ FH+F E H F KPND L LM+K A V+ E +
Sbjct: 60 RNFHRFAEKHSFIKPNDSRALHLMTKCAQTVMNELED 96
>sp|Q5M965|THG1_RAT Probable tRNA(His) guanylyltransferase OS=Rattus norvegicus
GN=Thg1l PE=2 SV=1
Length = 298
Score = 92.8 bits (229), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 40/71 (56%), Positives = 52/71 (73%)
Query: 31 LACSMAKSKFEYVREFESHDRCLPNCFIVVRVDGKGFHKFTEAHGFDKPNDRSGLWLMSK 90
L +MAKSKFEYVR+FE D CLP+C++VVR+DG+ FH+F E H F KPND L LM+K
Sbjct: 26 LGVAMAKSKFEYVRDFEVDDTCLPHCWVVVRLDGRNFHRFAEKHNFAKPNDSRALHLMTK 85
Query: 91 AAACVIEEFNE 101
A V++E +
Sbjct: 86 CAQTVMQELED 96
>sp|Q9Y7T3|THG1_SCHPO tRNA(His) guanylyltransferase OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=thg1 PE=3 SV=1
Length = 261
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 39/67 (58%), Positives = 51/67 (76%)
Query: 35 MAKSKFEYVREFESHDRCLPNCFIVVRVDGKGFHKFTEAHGFDKPNDRSGLWLMSKAAAC 94
MAKS+FEYV+++E DR LP +IV+R+DGKGFHKFT+ H F+KPND L LM+ AA
Sbjct: 1 MAKSRFEYVKQYERLDRLLPETYIVIRIDGKGFHKFTKKHDFEKPNDLRCLNLMNAAARV 60
Query: 95 VIEEFNE 101
V+ EF +
Sbjct: 61 VMSEFTD 67
>sp|Q9V3N8|THG1_DROME Probable tRNA(His) guanylyltransferase OS=Drosophila melanogaster
GN=l(2)35Bc PE=2 SV=1
Length = 286
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 52/72 (72%)
Query: 35 MAKSKFEYVREFESHDRCLPNCFIVVRVDGKGFHKFTEAHGFDKPNDRSGLWLMSKAAAC 94
MA S+FEYV+ FE D LPN +IV+R+DGK FHKF++ H F+KPND + L +M+ AA
Sbjct: 1 MACSRFEYVKSFEQDDSILPNVWIVIRIDGKKFHKFSKTHDFEKPNDENALNVMNAAATA 60
Query: 95 VIEEFNEYKMVH 106
V++EF + + +
Sbjct: 61 VMQEFRDIVLAY 72
>sp|Q6FPX3|THG1_CANGA tRNA(His) guanylyltransferase OS=Candida glabrata (strain ATCC
2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=THG1 PE=3 SV=1
Length = 237
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 36/65 (55%), Positives = 49/65 (75%)
Query: 35 MAKSKFEYVREFESHDRCLPNCFIVVRVDGKGFHKFTEAHGFDKPNDRSGLWLMSKAAAC 94
MAKSK+EYV++FESHD LP C+IVVR+DGK FH+F++ + F KPND L LM+ A
Sbjct: 1 MAKSKYEYVKQFESHDTLLPQCYIVVRIDGKKFHEFSKYYDFKKPNDERALKLMNACAKN 60
Query: 95 VIEEF 99
V+ ++
Sbjct: 61 VVLQY 65
>sp|Q6CW75|THG1_KLULA tRNA(His) guanylyltransferase OS=Kluyveromyces lactis (strain ATCC
8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 /
WM37) GN=THG1 PE=3 SV=1
Length = 237
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 37/67 (55%), Positives = 49/67 (73%)
Query: 35 MAKSKFEYVREFESHDRCLPNCFIVVRVDGKGFHKFTEAHGFDKPNDRSGLWLMSKAAAC 94
MAKS+FEYVR+FE HD LP+ +IVVRVDGK FH+F++ + F KPND L LM+ AA
Sbjct: 1 MAKSRFEYVRQFEVHDALLPDTYIVVRVDGKKFHEFSKYYNFAKPNDERALKLMNAAAKN 60
Query: 95 VIEEFNE 101
V ++ +
Sbjct: 61 VFMQYKQ 67
>sp|Q75DJ3|THG1_ASHGO tRNA(His) guanylyltransferase OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=THG1
PE=3 SV=1
Length = 237
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 35/62 (56%), Positives = 47/62 (75%)
Query: 35 MAKSKFEYVREFESHDRCLPNCFIVVRVDGKGFHKFTEAHGFDKPNDRSGLWLMSKAAAC 94
MAKS+FEYVRE+E HD LP +IVVR+DGK FH+F++ + F+KPND L LM+ +A
Sbjct: 1 MAKSRFEYVREYEVHDTLLPETYIVVRIDGKHFHEFSQHYSFEKPNDERALKLMNASAKN 60
Query: 95 VI 96
V+
Sbjct: 61 VV 62
>sp|Q7SDM8|THG1_NEUCR tRNA(His) guanylyltransferase OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=thg-1 PE=3 SV=1
Length = 293
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 50/72 (69%)
Query: 35 MAKSKFEYVREFESHDRCLPNCFIVVRVDGKGFHKFTEAHGFDKPNDRSGLWLMSKAAAC 94
MA SKFEYV++FE D LPN +IVVR+DG+GF KF+ + F+KPND+ L LM+ AA
Sbjct: 1 MANSKFEYVKQFEQPDSLLPNTWIVVRLDGRGFTKFSTKYAFEKPNDKRALDLMNAAARS 60
Query: 95 VIEEFNEYKMVH 106
V+ E + + +
Sbjct: 61 VMSELPDITIAY 72
>sp|Q6BKD4|THG1_DEBHA tRNA(His) guanylyltransferase OS=Debaryomyces hansenii (strain ATCC
36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=THG1 PE=3 SV=2
Length = 265
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 52/72 (72%)
Query: 35 MAKSKFEYVREFESHDRCLPNCFIVVRVDGKGFHKFTEAHGFDKPNDRSGLWLMSKAAAC 94
MAKS+FEYV++FE + LP+ +++VRVDGKGFHKF+E + F KPND L +M+ AA
Sbjct: 1 MAKSRFEYVKQFERENFLLPDTYLIVRVDGKGFHKFSEEYEFSKPNDIRALKVMNNAAKN 60
Query: 95 VIEEFNEYKMVH 106
++ +F + M +
Sbjct: 61 LMAQFPDIMMAY 72
>sp|Q54E29|THG1_DICDI Probable tRNA(His) guanylyltransferase OS=Dictyostelium
discoideum GN=thg1 PE=3 SV=1
Length = 256
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/65 (56%), Positives = 46/65 (70%)
Query: 35 MAKSKFEYVREFESHDRCLPNCFIVVRVDGKGFHKFTEAHGFDKPNDRSGLWLMSKAAAC 94
MA SK+EYV+ FE D L N +IVVR+DG+ FHKFT H + KPND GL LM++AA
Sbjct: 1 MANSKYEYVKSFEQPDILLQNVWIVVRIDGRSFHKFTTKHDYAKPNDDRGLSLMNRAALE 60
Query: 95 VIEEF 99
V +EF
Sbjct: 61 VCKEF 65
>sp|P53215|THG1_YEAST tRNA(His) guanylyltransferase OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=THG1 PE=1 SV=1
Length = 237
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 34/65 (52%), Positives = 48/65 (73%)
Query: 35 MAKSKFEYVREFESHDRCLPNCFIVVRVDGKGFHKFTEAHGFDKPNDRSGLWLMSKAAAC 94
MA SKF YVR+FE+HD LP C+IVVR+DGK FH+F++ + F KPND + L LM+ A
Sbjct: 1 MANSKFGYVRQFETHDVILPQCYIVVRIDGKKFHEFSKFYEFAKPNDENALKLMNACAKN 60
Query: 95 VIEEF 99
++ ++
Sbjct: 61 LVLKY 65
>sp|F4IRQ5|THG1_ARATH tRNA(His) guanylyltransferase 1 OS=Arabidopsis thaliana GN=THG1
PE=1 SV=1
Length = 567
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 45/65 (69%)
Query: 35 MAKSKFEYVREFESHDRCLPNCFIVVRVDGKGFHKFTEAHGFDKPNDRSGLWLMSKAAAC 94
MA SK+EYV+ FE D + +VVR+DG+ F +F++ H F+KPND + L LM+ +A
Sbjct: 48 MANSKYEYVKSFELEDEVMLPNLMVVRIDGRDFSRFSQVHEFEKPNDETALNLMNSCSAA 107
Query: 95 VIEEF 99
V+EEF
Sbjct: 108 VLEEF 112
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 50/80 (62%), Gaps = 2/80 (2%)
Query: 22 LFTPKSHFSLACSMAKSKFEYVREFESHDRCLPNCFIVVRVDGKGFHKFTEAHGFDKPND 81
L+ HF+ + K + +++R F+ ++ LP ++VVR+DG FH+F++ H F+KPND
Sbjct: 303 LYNDLGHFTK--DIGKIEPDFIRSFQFENKLLPLTWVVVRIDGCHFHRFSDVHEFEKPND 360
Query: 82 RSGLWLMSKAAACVIEEFNE 101
L LM+ A V+EEF +
Sbjct: 361 EQALKLMNSCAVAVLEEFED 380
>sp|F4ISV6|THG2_ARATH tRNA(His) guanylyltransferase 2 OS=Arabidopsis thaliana GN=THG2
PE=1 SV=1
Length = 537
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 45/71 (63%)
Query: 31 LACSMAKSKFEYVREFESHDRCLPNCFIVVRVDGKGFHKFTEAHGFDKPNDRSGLWLMSK 90
A + K + +YV+ F+ R LP ++VVR+DG FH+F+E H F+KPND L LM+
Sbjct: 275 FAKDIGKIEPDYVKSFQFESRLLPLTWVVVRIDGCHFHRFSEVHEFEKPNDEQALKLMNS 334
Query: 91 AAACVIEEFNE 101
A V+EEF +
Sbjct: 335 CAVAVLEEFQD 345
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 44/65 (67%)
Query: 35 MAKSKFEYVREFESHDRCLPNCFIVVRVDGKGFHKFTEAHGFDKPNDRSGLWLMSKAAAC 94
MA SK+EYV+ FE D + I++R+DG+ F +F++ H F+KPND + L LM+ A+
Sbjct: 1 MANSKYEYVKSFEVEDEVMFPNLIIIRIDGRDFSRFSQVHKFEKPNDETSLNLMNSCASS 60
Query: 95 VIEEF 99
V+ E+
Sbjct: 61 VLVEY 65
>sp|O43092|OXA12_SCHPO Mitochondrial inner membrane protein oxa1-2
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=oxa102 PE=2 SV=2
Length = 409
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 11/40 (27%), Positives = 24/40 (60%)
Query: 16 LVARGELFTPKSHFSLACSMAKSKFEYVREFESHDRCLPN 55
++ RG F+ KSH+S++C + ++ +R+ +H+ N
Sbjct: 4 VIGRGIKFSSKSHYSVSCFLIATQGAKIRQIHTHNTFFKN 43
>sp|Q5ZJW8|DTL_CHICK Denticleless protein homolog OS=Gallus gallus GN=DTL PE=2 SV=1
Length = 720
Score = 30.0 bits (66), Expect = 4.2, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 24 TPKSHFSLACSMAKSKFEYVREFESHDRCLPNCFIVVRVD 63
TPK+ S A AK + + +E E+ +CL +C V +D
Sbjct: 536 TPKAQHSQAEKRAKRRLDCSKEDEAGQKCLQDCSCVTELD 575
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.326 0.138 0.440
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,526,760
Number of Sequences: 539616
Number of extensions: 1435633
Number of successful extensions: 2851
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2831
Number of HSP's gapped (non-prelim): 21
length of query: 107
length of database: 191,569,459
effective HSP length: 75
effective length of query: 32
effective length of database: 151,098,259
effective search space: 4835144288
effective search space used: 4835144288
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)