Query psy12266
Match_columns 107
No_of_seqs 110 out of 271
Neff 3.6
Searched_HMMs 29240
Date Fri Aug 16 22:57:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12266.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12266hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3otd_A TRNA(His) guanylyltrans 100.0 9.2E-36 3.2E-40 238.1 7.3 72 35-106 1-72 (269)
2 1whu_A Polynucleotide phosphor 38.7 5 0.00017 26.5 -0.6 10 60-69 92-101 (104)
3 1whs_A Serine carboxypeptidase 31.0 46 0.0016 25.5 3.7 46 57-102 94-142 (255)
4 1qg9_A Protein (sodium channel 29.3 25 0.00085 18.8 1.4 17 6-22 5-24 (26)
5 3m7n_G Probable exosome comple 25.7 11 0.00039 28.0 -0.6 28 35-71 6-33 (259)
6 1gxs_A P-(S)-hydroxymandelonit 23.9 79 0.0027 24.4 3.9 43 58-101 101-146 (270)
7 2wnr_A Probable exosome comple 20.8 16 0.00056 27.1 -0.6 12 60-71 24-35 (271)
8 1udn_A Ribonuclease PH, RNAse 20.8 19 0.00065 26.8 -0.2 10 61-70 2-11 (255)
9 2nn6_C Exosome complex exonucl 20.4 17 0.00058 27.1 -0.5 12 60-71 24-35 (278)
10 1x4o_A Splicing factor 4; stru 20.0 90 0.0031 19.7 3.0 24 77-100 10-33 (78)
No 1
>3otd_A TRNA(His) guanylyltransferase; polymerase-like PALM domain, catalytic carboxylates; 2.28A {Homo sapiens} PDB: 3otc_A 3otb_A 3ote_A
Probab=100.00 E-value=9.2e-36 Score=238.05 Aligned_cols=72 Identities=54% Similarity=1.000 Sum_probs=69.6
Q ss_pred hhccchhhhhhcccCCCcCCCCeEEEEEcCCCccccccccCCCCCCCHHHHHHHHHHHHHHHHhCCCceeee
Q psy12266 35 MAKSKFEYVREFESHDRCLPNCFIVVRVDGKGFHKFTEAHGFDKPNDRSGLWLMSKAAACVIEEFNEYKMVH 106 (107)
Q Consensus 35 MA~skyeYVK~fE~~d~llP~~~IVVRIDGR~FhrFTk~h~FeKPnD~rfl~lM~~aA~~vm~ef~divlA~ 106 (107)
||||||||||.||.+++|+|++|||||||||+||+||+.|+|+||||+|+++||++||+.||++|+||++||
T Consensus 1 ma~sk~eyvr~fE~~d~llp~~~iVVRiDGr~F~kfs~~~~F~KPnD~r~l~lM~~aA~~lm~~~~~i~~aY 72 (269)
T 3otd_A 1 MAKSKFEYVRDFEADDTCLAHCWVVVRLDGRNFHRFAEKHNFAKPNDSRALQLMTKCAQTVMEELEDIVIAY 72 (269)
T ss_dssp --CCSSGGGGGGCCCCBCCTTSEEEEEEEETTHHHHHHHTTCCSSCCHHHHHHHHHHHHHHHHHSSSEEEEE
T ss_pred CCCccchhhhhhccccccCCCCeEEEEEeCCccchhhhhcCCCCCCCHHHHHHHHHHHHHHHHHcCCeEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998
No 2
>1whu_A Polynucleotide phosphorylase; 3'-5' RNA exonuclease; pnpase, alpha-helical domain, structural genomics; NMR {Mus musculus} SCOP: a.4.9.1
Probab=38.75 E-value=5 Score=26.48 Aligned_cols=10 Identities=30% Similarity=0.411 Sum_probs=8.3
Q ss_pred EEEcCCCccc
Q psy12266 60 VRVDGKGFHK 69 (107)
Q Consensus 60 VRIDGR~Fhr 69 (107)
+|+|||+...
T Consensus 92 ~RiDGR~~de 101 (104)
T 1whu_A 92 KRCDGRDSGP 101 (104)
T ss_dssp CSCCCCCSSC
T ss_pred cCCCCCCccc
Confidence 7999998764
No 3
>1whs_A Serine carboxypeptidase II; HET: NAG FUC; 2.00A {Triticum aestivum} SCOP: c.69.1.5 PDB: 1bcs_A* 1bcr_A* 1wht_A* 3sc2_A*
Probab=30.95 E-value=46 Score=25.46 Aligned_cols=46 Identities=22% Similarity=0.181 Sum_probs=35.7
Q ss_pred eEEEEEc---CCCccccccccCCCCCCCHHHHHHHHHHHHHHHHhCCCc
Q psy12266 57 FIVVRVD---GKGFHKFTEAHGFDKPNDRSGLWLMSKAAACVIEEFNEY 102 (107)
Q Consensus 57 ~IVVRID---GR~FhrFTk~h~FeKPnD~rfl~lM~~aA~~vm~ef~di 102 (107)
.=||-|| |-+|+.-...-++..-+|....+.+.+.-+..+++||+.
T Consensus 94 anvlfiDqPvGtGfSy~~~~~~~~~~~~~~~a~~~~~fl~~f~~~fp~~ 142 (255)
T 1whs_A 94 ANVLFLDSPAGVGFSYTNTSSDIYTSGDNRTAHDSYAFLAKWFERFPHY 142 (255)
T ss_dssp SEEEEECCSTTSTTCEESSGGGGGSCCHHHHHHHHHHHHHHHHHHCGGG
T ss_pred CCEEEEecCCCCccCCCcCccccccCCHHHHHHHHHHHHHHHHHhCHHh
Confidence 3589999 999987555434545688889999999999999988753
No 4
>1qg9_A Protein (sodium channel protein, brain II alpha subunit); transmembrane sodium channel, structure, transmembrane channel; NMR {Synthetic} SCOP: j.35.1.1
Probab=29.26 E-value=25 Score=18.82 Aligned_cols=17 Identities=35% Similarity=0.536 Sum_probs=10.9
Q ss_pred hhhhHHHH---HHHhhcCcc
Q psy12266 6 FSTGVLQF---CKLVARGEL 22 (107)
Q Consensus 6 ~~~~~~~~---~~~~~~~~~ 22 (107)
..+|+.-| ||.+|||=.
T Consensus 5 ~F~~IYtfE~liKi~ArGf~ 24 (26)
T 1qg9_A 5 TFTGIYTFESLIKILARXXX 24 (26)
T ss_dssp CHHHHHHHHHHHHHHTC---
T ss_pred EeeHHHHHHHHHHHHHhhhc
Confidence 34677777 999999943
No 5
>3m7n_G Probable exosome complex exonuclease 2; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_H 2ba0_I 3m85_G
Probab=25.66 E-value=11 Score=28.01 Aligned_cols=28 Identities=32% Similarity=0.564 Sum_probs=18.5
Q ss_pred hhccchhhhhhcccCCCcCCCCeEEEEEcCCCccccc
Q psy12266 35 MAKSKFEYVREFESHDRCLPNCFIVVRVDGKGFHKFT 71 (107)
Q Consensus 35 MA~skyeYVK~fE~~d~llP~~~IVVRIDGR~FhrFT 71 (107)
+.+...+|++++=.+ =+|.|||.++.+=
T Consensus 6 ls~~e~~~i~~~l~~---------~~R~DGR~~~e~R 33 (259)
T 3m7n_G 6 LVDIKRDYVLSKLRD---------NERIDGRGFDEFR 33 (259)
T ss_dssp HHHHHHHHHHHHHHT---------TCCTTCCCTTCCC
T ss_pred cCHHHHHHHHHHHhc---------CCCCCCCCCcccc
Confidence 344566777766321 1789999998763
No 6
>1gxs_A P-(S)-hydroxymandelonitrIle lyase chain A; inhibitor complex, cyanogenesis mechanism; HET: NAG FUL DKA; 2.3A {Sorghum bicolor} SCOP: c.69.1.5
Probab=23.94 E-value=79 Score=24.36 Aligned_cols=43 Identities=14% Similarity=0.080 Sum_probs=33.7
Q ss_pred EEEEEc---CCCccccccccCCCCCCCHHHHHHHHHHHHHHHHhCCC
Q psy12266 58 IVVRVD---GKGFHKFTEAHGFDKPNDRSGLWLMSKAAACVIEEFNE 101 (107)
Q Consensus 58 IVVRID---GR~FhrFTk~h~FeKPnD~rfl~lM~~aA~~vm~ef~d 101 (107)
=||-|| |-+|+.-...-.+ .-.|..+.+-+...-+..+++||+
T Consensus 101 nllfiDqPvGtGfSy~~~~~~~-~~~d~~~a~d~~~fl~~f~~~fp~ 146 (270)
T 1gxs_A 101 NILFAESPAGVGFSYSNTSSDL-SMGDDKMAQDTYTFLVKWFERFPH 146 (270)
T ss_dssp EEEEECCSTTSTTCEESSGGGG-CCCHHHHHHHHHHHHHHHHHHCGG
T ss_pred cEEEEeccccccccCCCCCccc-cCCcHHHHHHHHHHHHHHHHhChh
Confidence 489999 9999876543334 557888888888999999998875
No 7
>2wnr_A Probable exosome complex exonuclease 2; phosphate binding, 3'-5' exoribonuclease, hydrolase; 2.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=20.84 E-value=16 Score=27.15 Aligned_cols=12 Identities=42% Similarity=1.007 Sum_probs=9.7
Q ss_pred EEEcCCCccccc
Q psy12266 60 VRVDGKGFHKFT 71 (107)
Q Consensus 60 VRIDGR~FhrFT 71 (107)
+|+|||++..+=
T Consensus 24 ~R~DGR~~~e~R 35 (271)
T 2wnr_A 24 ERIDGRSLHEFR 35 (271)
T ss_dssp CCTTCCCTTCCC
T ss_pred CCCCCCCccccc
Confidence 699999988753
No 8
>1udn_A Ribonuclease PH, RNAse PH; transferase, riken structural genomics/proteomics initiative structural genomics; 2.30A {Aquifex aeolicus} SCOP: d.14.1.4 d.101.1.1 PDB: 1udq_A 1uds_A 1udo_A
Probab=20.81 E-value=19 Score=26.80 Aligned_cols=10 Identities=30% Similarity=0.554 Sum_probs=5.6
Q ss_pred EEcCCCcccc
Q psy12266 61 RVDGKGFHKF 70 (107)
Q Consensus 61 RIDGR~FhrF 70 (107)
|+|||.+..+
T Consensus 2 R~DGR~~~e~ 11 (255)
T 1udn_A 2 RSDGRKEDQL 11 (255)
T ss_dssp CTTSCCTTCC
T ss_pred CCCCCCCCCc
Confidence 5666655543
No 9
>2nn6_C Exosome complex exonuclease RRP43; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=20.42 E-value=17 Score=27.06 Aligned_cols=12 Identities=33% Similarity=0.686 Sum_probs=9.6
Q ss_pred EEEcCCCccccc
Q psy12266 60 VRVDGKGFHKFT 71 (107)
Q Consensus 60 VRIDGR~FhrFT 71 (107)
+|+|||++..+=
T Consensus 24 ~R~DGR~~~e~R 35 (278)
T 2nn6_C 24 CRPDGRELGEFR 35 (278)
T ss_dssp CCTTSCCSCCCC
T ss_pred CCCCCCCccccc
Confidence 499999988753
No 10
>1x4o_A Splicing factor 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.217.1.1
Probab=19.97 E-value=90 Score=19.72 Aligned_cols=24 Identities=21% Similarity=0.184 Sum_probs=20.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhCC
Q psy12266 77 DKPNDRSGLWLMSKAAACVIEEFN 100 (107)
Q Consensus 77 eKPnD~rfl~lM~~aA~~vm~ef~ 100 (107)
.-|-|+...+.+..+|..|.++=+
T Consensus 10 ~pP~d~~~~~iIdktA~fVaknG~ 33 (78)
T 1x4o_A 10 SPPEDEEAKNLAEKLARFIADGGP 33 (78)
T ss_dssp CCCSCHHHHHHHHHHHHHHHHSCT
T ss_pred cCcCCHHHHHHHHHHHHHHHHcCH
Confidence 348999999999999999987533
Done!