RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy12266
         (107 letters)



>3otd_A TRNA(His) guanylyltransferase; polymerase-like PALM domain,
           catalytic carboxylates; 2.28A {Homo sapiens} PDB: 3otc_A
           3otb_A 3ote_A
          Length = 269

 Score =  113 bits (284), Expect = 2e-32
 Identities = 39/72 (54%), Positives = 52/72 (72%)

Query: 35  MAKSKFEYVREFESHDRCLPNCFIVVRVDGKGFHKFTEAHGFDKPNDRSGLWLMSKAAAC 94
           MAKSKFEYVR+FE+ D CL +C++VVR+DG+ FH+F E H F KPND   L LM+K A  
Sbjct: 1   MAKSKFEYVRDFEADDTCLAHCWVVVRLDGRNFHRFAEKHNFAKPNDSRALQLMTKCAQT 60

Query: 95  VIEEFNEYKMVH 106
           V+EE  +  + +
Sbjct: 61  VMEELEDIVIAY 72


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 30.3 bits (67), Expect = 0.065
 Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 5/28 (17%)

Query: 15 KLVARGELFTPKSHFSLACSMA-KSKFE 41
          KL A  +L+   S    A ++A K+  E
Sbjct: 24 KLQASLKLYADDS----APALAIKATME 47


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
            acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
            synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 28.9 bits (64), Expect = 0.36
 Identities = 13/48 (27%), Positives = 17/48 (35%), Gaps = 10/48 (20%)

Query: 3    PKLFSTGVLQFCKLVARGELFTPKSHF---SL----A-CSMAKS-KFE 41
            P L       F  L ++G L    + F   SL    A  S+A     E
Sbjct: 1734 PALTLMEKAAFEDLKSKG-LIPADATFAGHSLGEYAALASLADVMSIE 1780


>3juu_A Porphyranase B; glycoside hydrolase family GH16, beta-sandwich
           fold, jelly roll, sugar binding protein,
           hydrolase-carbohydrate complex; HET: MES GOL; 1.80A
           {Zobellia galactanivorans}
          Length = 280

 Score = 27.1 bits (60), Expect = 1.1
 Identities = 8/22 (36%), Positives = 10/22 (45%)

Query: 58  IVVRVDGKGFHKFTEAHGFDKP 79
           I+  +DGK   K T    FD  
Sbjct: 214 IIFFLDGKMQSKVTPPADFDIE 235


>4fbj_A CIF, hypothetical protein; effector-HOST target complex, glutamine
           deamidase, deamidati bacterial effector, cell
           cycle-protein binding complex; 1.60A {Photorhabdus
           luminescens subsp} PDB: 3gqj_A
          Length = 261

 Score = 26.7 bits (58), Expect = 1.5
 Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 4/61 (6%)

Query: 14  CKLVARG--ELFTPKSHFSLACSMAKSKFEYVREFESHDRCLPNC--FIVVRVDGKGFHK 69
             L A+   +L T   H      MA++      EF      L +   ++ +  D +  H 
Sbjct: 76  SGLSAQNIFKLMTEGEHAVDPVEMAQTGKIDGNEFAESVDQLSSAKNYVALVNDRRLGHM 135

Query: 70  F 70
           F
Sbjct: 136 F 136


>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex,
           NAD cofactor, regul SAM-dependent methylation reactions;
           HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A*
           3onf_A*
          Length = 488

 Score = 25.9 bits (57), Expect = 3.6
 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 2/35 (5%)

Query: 7   STGVLQFCKLVARGELFTPKSHFSLACSMAKSKFE 41
           +TGV +  ++ A G L  P    ++  S+ KSKF+
Sbjct: 210 TTGVKRLYQMQANGTLLFPA--INVNDSVTKSKFD 242


>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix
           bundle, hydrolase/hydrolase inhibitor complex; 1.90A
           {Solanum lycopersicum}
          Length = 317

 Score = 25.4 bits (56), Expect = 3.7
 Identities = 10/30 (33%), Positives = 12/30 (40%)

Query: 55  NCFIVVRVDGKGFHKFTEAHGFDKPNDRSG 84
            C +V R  GK       A G   PN  +G
Sbjct: 165 KCQLVARKPGKYQQNMVTAQGRTDPNQATG 194


>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A
           {Daucus carota} SCOP: b.80.1.5
          Length = 319

 Score = 25.4 bits (56), Expect = 4.0
 Identities = 10/30 (33%), Positives = 12/30 (40%)

Query: 55  NCFIVVRVDGKGFHKFTEAHGFDKPNDRSG 84
           +C I  R  G G      A G   PN  +G
Sbjct: 169 DCDIHARRPGSGQKNMVTAQGRTDPNQNTG 198


>3fz0_A Nucleoside hydrolase, putative; NH fold, open alpha/beta structure,
           glycosidase; HET: BTB; 2.50A {Trypanosoma brucei}
          Length = 360

 Score = 25.1 bits (55), Expect = 5.2
 Identities = 6/21 (28%), Positives = 11/21 (52%), Gaps = 1/21 (4%)

Query: 54  PNCFIVVRVDGKGFHK-FTEA 73
            NC ++ +VD + F K   + 
Sbjct: 335 RNCNVITKVDNEMFLKALRDI 355


>3t8i_A Purine nucleosidase, (IUNH-2); purine nucleoside hydrolase,
           thermostable protein, open (ALP structure, rossmann
           fold, NH-fold; 1.80A {Sulfolobus solfataricus}
          Length = 306

 Score = 24.4 bits (54), Expect = 8.2
 Identities = 7/21 (33%), Positives = 10/21 (47%), Gaps = 1/21 (4%)

Query: 54  PNCFIVVRVDGKGFHK-FTEA 73
           PN  IV++ DG  F      +
Sbjct: 283 PNAEIVLKADGGKFKNLLFNS 303


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.326    0.138    0.440 

Gapped
Lambda     K      H
   0.267   0.0487    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,634,246
Number of extensions: 84004
Number of successful extensions: 167
Number of sequences better than 10.0: 1
Number of HSP's gapped: 167
Number of HSP's successfully gapped: 16
Length of query: 107
Length of database: 6,701,793
Length adjustment: 72
Effective length of query: 35
Effective length of database: 4,691,481
Effective search space: 164201835
Effective search space used: 164201835
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (24.0 bits)