RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12266
         (107 letters)



>d1q88a_ e.47.1.1 (A:) 39 kda initiator binding protein, IBP39,
           C-terminal domains {Trichomonas vaginalis [TaxId: 5722]}
          Length = 192

 Score = 26.1 bits (57), Expect = 0.93
 Identities = 20/115 (17%), Positives = 34/115 (29%), Gaps = 34/115 (29%)

Query: 11  LQFCKLVARGELFTP------KSHFSLACSMAKSKFEYV------REFESH-------DR 51
               K +A    F P      K    L  S  K  +                      D+
Sbjct: 75  ADLYKFLAM---FGPYETIMLKIASLLLISNNKGHWLTFDPQAEKNANNQRDSISGWFDQ 131

Query: 52  CLPNCFIVVRVDGKGFHKFTEAHGFDKPN-DRSGLWLMSKAAACVIEEFNEYKMV 105
             PNC I+    G           ++KP  + +G +LM +      E+++ +   
Sbjct: 132 NEPNCLILKTPTG-------IRKIWNKPLIEATGQYLMDENG----EKYDSWDKY 175


>d1lnsa3 c.69.1.21 (A:146-550) X-Prolyl dipeptidyl aminopeptidase
           PepX, middle domain {Lactococcus lactis [TaxId: 1358]}
          Length = 405

 Score = 25.7 bits (55), Expect = 1.5
 Identities = 12/65 (18%), Positives = 19/65 (29%), Gaps = 5/65 (7%)

Query: 34  SMAKSKFEYVREFESHDRCLPNCFIVVRVDGKGFHKFTEAHGFDKPNDRSGL-----WLM 88
             A  +F +   +  +D  L   F  + V G G                  +     WL 
Sbjct: 114 DKAPYRFTHGWTYSLNDYFLTRGFASIYVAGVGTRSSDGFQTSGDYQQIYSMTAVIDWLN 173

Query: 89  SKAAA 93
            +A A
Sbjct: 174 GRARA 178


>d1zbsa1 c.55.1.5 (A:108-283) Hypothetical protein PG1100
          {Porphyromonas gingivalis [TaxId: 837]}
          Length = 176

 Score = 24.6 bits (53), Expect = 2.5
 Identities = 6/34 (17%), Positives = 10/34 (29%)

Query: 58 IVVRVDGKGFHKFTEAHGFDKPNDRSGLWLMSKA 91
               DG+         G+   ++ SG  L    
Sbjct: 14 NSCLFDGREIKANVSPLGYILGDEGSGAVLGRLF 47


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.138    0.440 

Gapped
Lambda     K      H
   0.267   0.0625    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 405,414
Number of extensions: 16825
Number of successful extensions: 56
Number of sequences better than 10.0: 1
Number of HSP's gapped: 56
Number of HSP's successfully gapped: 9
Length of query: 107
Length of database: 2,407,596
Length adjustment: 67
Effective length of query: 40
Effective length of database: 1,487,686
Effective search space: 59507440
Effective search space used: 59507440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.1 bits)