Query psy12268
Match_columns 410
No_of_seqs 157 out of 1449
Neff 6.2
Searched_HMMs 29240
Date Fri Aug 16 22:59:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12268.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12268hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kyl_A Telomerase reverse tran 99.6 2.1E-16 7.2E-21 162.6 8.7 114 173-301 254-375 (596)
2 3fsi_A RT, reverse transcripta 98.6 3E-08 1E-12 94.4 4.5 87 226-339 164-254 (255)
3 1rw3_A POL polyprotein; RNA an 98.2 4.7E-07 1.6E-11 93.0 4.3 71 226-301 168-242 (455)
4 2zd1_A Reverse transcriptase/r 98.2 2.1E-06 7.2E-11 90.5 7.5 110 225-361 149-277 (557)
5 2zd1_B P51 RT; P51/P66, hetero 98.2 1.7E-06 5.8E-11 88.6 6.0 110 225-361 147-275 (428)
6 1mu2_A HIV-2 RT; HIV-2 reverse 98.1 4.5E-06 1.5E-10 88.0 7.4 72 225-300 147-222 (555)
7 1ra6_A P3D, genome polyprotein 96.0 0.0034 1.2E-07 64.7 3.7 105 183-303 249-364 (461)
8 1xr5_A Genome polyprotein; RNA 96.0 0.0037 1.3E-07 64.5 3.7 100 185-301 251-361 (466)
9 2ckw_A RNA-directed RNA polyme 94.7 0.11 3.7E-06 54.2 10.0 106 184-301 259-383 (515)
10 3uqs_A RNA-dependent RNA polym 94.2 0.036 1.2E-06 57.9 4.9 105 183-301 258-377 (515)
11 1khv_A RNA-directed RNA polyme 92.8 0.17 5.9E-06 52.6 7.1 105 184-301 267-390 (516)
12 3n6m_A RNA-dependent RNA polym 90.9 0.16 5.3E-06 52.4 4.2 104 183-301 249-363 (462)
13 2ijd_1 Picornain 3C, RNA-direc 84.9 0.6 2E-05 50.0 4.1 103 182-301 431-545 (644)
14 1xr7_A Genome polyprotein; RNA 82.8 0.76 2.6E-05 47.1 3.7 100 183-301 250-361 (460)
15 3bso_A RNA dependent RNA polym 80.8 1.7 5.8E-05 45.1 5.5 104 184-301 259-377 (510)
16 1u09_A Polyprotein; protein-DN 80.4 1.1 3.9E-05 45.9 4.0 96 190-300 265-371 (476)
17 3avx_A Elongation factor TS, e 69.2 8.5 0.00029 44.2 7.5 137 187-358 980-1128(1289)
18 3u55_A Phosphoribosylaminoimid 36.0 10 0.00036 35.4 0.9 110 182-301 55-178 (238)
19 2z02_A Phosphoribosylaminoimid 32.6 11 0.00039 35.3 0.6 111 182-301 62-186 (242)
20 3kre_A Phosphoribosylaminoimid 27.4 15 0.0005 35.0 0.4 111 182-301 77-201 (263)
21 1kut_A Phosphoribosylaminoimid 23.9 16 0.00053 34.1 -0.2 111 182-301 49-173 (230)
22 3lgb_A DNA primase large subun 21.6 19 0.00065 32.7 -0.1 41 175-215 118-158 (194)
23 2ywv_A Phosphoribosylaminoimid 21.0 14 0.00048 34.8 -1.2 111 182-301 59-183 (244)
No 1
>3kyl_A Telomerase reverse transcriptase; reverse transcriptase; 2.70A {Tribolium castaneum} PDB: 3du5_A 3du6_A
Probab=99.64 E-value=2.1e-16 Score=162.57 Aligned_cols=114 Identities=13% Similarity=0.105 Sum_probs=91.1
Q ss_pred hhhcCCCHHHHHHHHHhCCC---ChHHHHHHHHHhhcceEEEeeCCccCCccccCccccCCCcchhhhhhhhhhhhhhcc
Q psy12268 173 EEKRKNEKAVRLTKLSAFGI---SGYLLQWIRNFLSGWIQIVRVGTSTSEPIHIPSGCIQGGHMSGLLFSLFINDIAEIF 249 (410)
Q Consensus 173 ~~~~~vdH~~Ll~~L~~~G~---p~~li~lI~s~Ls~rs~~V~~~g~~S~~~~i~~GVPQGs~LSPLLFnL~l~~L~~~l 249 (410)
.-+|.|+|+.|+..|+..+. +..++.||..++...- |..+| ..+....|+|||++|||+|.|||++.+...+
T Consensus 254 kFFDnINHdkLLk~L~~~i~~IlDk~Il~LIkk~Lka~L--V~igG---k~y~qekGTPQGGVISPLLANIYLheLDkel 328 (596)
T 3kyl_A 254 DAYGNVKIPVLCKLIQSIPTHLLDSEKKNFIVDHISNQF--VAFRR---KIYKWNHGLLQGDPLSGCLCELYMAFMDRLY 328 (596)
T ss_dssp STTTTCCHHHHHHHHTTSCTTTSCHHHHHHHHHHHHCEE--EESSS---SEEEECSSSCBTCTTHHHHHHHHHHHHHHHH
T ss_pred hhCCCCCHHHHHHHHHhhccccccHHHHHHHHHHHhhCe--EEECC---EEEecCCcccCCcchhHHHHHHHHHHHHHHH
Confidence 46899999999999999875 7888999999986544 45565 3466789999999999999999999999764
Q ss_pred -----CCcccccccchhhhhhhcCChhhhhhHHHHHHHHHhhhhhccccccccceeE
Q psy12268 250 -----PGFNFWLFADDLKVALRVGGQREVDSMQSMLSRLYHWCSINKMELNIGKCMV 301 (410)
Q Consensus 250 -----~~i~~l~YADDivIis~s~s~~~~~~Lq~~Ld~L~~w~~~~GLkIN~~KTei 301 (410)
.+..+++||||++|++.+ ...++.++..+..| +++|++||.+
T Consensus 329 ~~~l~kd~~LVRYADDFVIi~~S-----ke~Aerfl~~Lkg~-----leLNpEKTrI 375 (596)
T 3kyl_A 329 FSNLDKDAFIHRTVDDYFFCSPH-----PHKVYDFELLIKGV-----YQVNPTKTRT 375 (596)
T ss_dssp STTSCTTSEEEECSSEEEEEESC-----HHHHHHHHHHHHHH-----SCEEEEEEEE
T ss_pred HHhhccCceEEEEcCcEEEEECC-----HHHHHHHHHHhhCc-----ceECchhcee
Confidence 356799999999999843 24455555555544 3999999986
No 2
>3fsi_A RT, reverse transcriptase domain; transferase/DNA MMLV RT, protein-DNA complex, drug-DNA complex; HET: OWL; 1.75A {Moloney murine leukemia virus} SCOP: e.8.1.2 PDB: 1d1u_A 1n4l_A* 1ztt_A 2fjv_A* 2fjw_A 2fjx_A* 2fvp_A 2fvq_A 2fvr_A 2fvs_A 2r2r_A* 2r2s_A* 2r2t_A* 2r2u_A* 1ztw_A* 1i6j_A 1qaj_A* 1d0e_A* 1nnd_A 1mml_A ...
Probab=98.57 E-value=3e-08 Score=94.38 Aligned_cols=87 Identities=21% Similarity=0.140 Sum_probs=71.7
Q ss_pred cccCCCcchhhhhhhhhhhhhhcc----CCcccccccchhhhhhhcCChhhhhhHHHHHHHHHhhhhhccccccccceeE
Q psy12268 226 GCIQGGHMSGLLFSLFINDIAEIF----PGFNFWLFADDLKVALRVGGQREVDSMQSMLSRLYHWCSINKMELNIGKCMV 301 (410)
Q Consensus 226 GVPQGs~LSPLLFnL~l~~L~~~l----~~i~~l~YADDivIis~s~s~~~~~~Lq~~Ld~L~~w~~~~GLkIN~~KTei 301 (410)
-+|||..-||.+|..+|+.+...+ +++.+..|+||++|++. +...+...+..+..++..+||.+|++||+.
T Consensus 164 ~mPfGl~~sP~~fq~~m~~il~~~~~~~~~~~v~~Y~DDili~s~-----~~eeh~~~l~~v~~~L~~~gl~l~~~Kc~f 238 (255)
T 3fsi_A 164 RLPQGFKNSPTLFDEALHRDLADFRIQHPDLILLQYVDDLLLAAT-----SELDCQQGTRALLQTLGNLGYRASAKKAQI 238 (255)
T ss_dssp BCCTTCTTHHHHHHHHHHHHTHHHHHHCTTCEEEEETTEEEEEES-----SHHHHHHHHHHHHHHHHHHTCCBCTTTCEE
T ss_pred EeCCCCCCcHHHHHHHHHHHHHHHHHhCcCcEEEEEcCCeEEEeC-----CHHHHHHHHHHHHHHHHHCCeEECHHHhcc
Confidence 369999999999999999888754 45678999999999873 445666678889999999999999999985
Q ss_pred EEeecCCCCccceeeeCCccccccccccccceeecCcc
Q psy12268 302 MTYHRNKSPILASYDINGQALARCEQVRDLGVTFQKTL 339 (410)
Q Consensus 302 m~f~~~~~~~~~~~ti~g~~I~~ves~KYLGV~Ld~kL 339 (410)
.. ..+.|||+.|+...
T Consensus 239 ~~----------------------~~~~fLG~~i~~~g 254 (255)
T 3fsi_A 239 CQ----------------------KQVKYLGYLLKEGQ 254 (255)
T ss_dssp EE----------------------SEEEETTEEEETTB
T ss_pred cC----------------------CceEEEEEEEeCCc
Confidence 22 24799999998653
No 3
>1rw3_A POL polyprotein; RNA and DNA dependent DNA polymerase, reverse transcriptase, transferase, replication; 3.00A {Moloney murine leukemia virus} SCOP: e.8.1.2
Probab=98.25 E-value=4.7e-07 Score=93.02 Aligned_cols=71 Identities=20% Similarity=0.094 Sum_probs=59.8
Q ss_pred cccCCCcchhhhhhhhhhhhhhcc----CCcccccccchhhhhhhcCChhhhhhHHHHHHHHHhhhhhccccccccceeE
Q psy12268 226 GCIQGGHMSGLLFSLFINDIAEIF----PGFNFWLFADDLKVALRVGGQREVDSMQSMLSRLYHWCSINKMELNIGKCMV 301 (410)
Q Consensus 226 GVPQGs~LSPLLFnL~l~~L~~~l----~~i~~l~YADDivIis~s~s~~~~~~Lq~~Ld~L~~w~~~~GLkIN~~KTei 301 (410)
-+|||..-||.+|..+|+.++..+ ++..+..|+||++|++. +...+...+..+...+..+||.+|++||..
T Consensus 168 ~mpfGl~naP~~fq~~m~~~l~~~~~~~~~~~v~~YvDDili~s~-----~~~e~~~~l~~v~~~l~~~gl~l~~~K~~f 242 (455)
T 1rw3_A 168 RLPQGFKNSPTLFDEALHRDLADFRIQHPDLILLQYVDDLLLAAT-----SELDCQQGTRALLQTLGNLGYRASAKKAQI 242 (455)
T ss_dssp BCCSSCTTHHHHHHHHHHHHHHHHHHTCTTCEEEEETTEEEEEES-----SHHHHHHHHHHHHHHHHHHTCCBCGGGCCC
T ss_pred ecCCCCCCcHHHHHHHHHHHHHHhhhhCCCceEEEEcCCEEEecC-----CHHHHHHHHHHHHHHHHHcCCccCccchhh
Confidence 479999999999999999888755 56788999999999873 345556677888888899999999999985
No 4
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Probab=98.18 E-value=2.1e-06 Score=90.52 Aligned_cols=110 Identities=16% Similarity=0.121 Sum_probs=78.7
Q ss_pred ccccCCCcchhhhhhhhhhhhhhcc----CCcccccccchhhhhhhcCChhhhhhHHHHHHHHHhhhhhcccccccccee
Q psy12268 225 SGCIQGGHMSGLLFSLFINDIAEIF----PGFNFWLFADDLKVALRVGGQREVDSMQSMLSRLYHWCSINKMELNIGKCM 300 (410)
Q Consensus 225 ~GVPQGs~LSPLLFnL~l~~L~~~l----~~i~~l~YADDivIis~s~s~~~~~~Lq~~Ld~L~~w~~~~GLkIN~~KTe 300 (410)
..+|||...||.+|..+|+.++..+ +++.+..|.||++|++.+ +...+...|..+...+..+||.+|++||.
T Consensus 149 ~~mPfGl~nap~~fq~~m~~il~~~~~~~~~~~v~~Y~DDIli~s~~----~~~eh~~~l~~v~~~l~~~gl~l~~~Kc~ 224 (557)
T 2zd1_A 149 NVLPQGWKGSPAIFQSSMTKILEPFAAQNPDIVIYQYMDDLYVGSDL----EIGQHRTKIEELRQHLLRWGLTTPDKKHQ 224 (557)
T ss_dssp SBCCTTCTTHHHHHHHHHHHHHHHHHHTCTTEEEEEETTEEEEEECS----CHHHHHHHHHHHHHHHHTTTCCCCCSCCS
T ss_pred EeeCCCCCCHHHHHHHHHHHHHHHhhhcCCCceEEEEecCEEEecCc----hHHHHHHHHHHHHHHHHHcCCccChhhcC
Confidence 4589999999999999999888654 345688999999998731 23445556778888889999999999997
Q ss_pred EEEeecCCCCccceeeeCCccccccccccccceeecCcc--------------h-HHHHHHHHHHHHHhhhccCCC
Q psy12268 301 VMTYHRNKSPILASYDINGQALARCEQVRDLGVTFQKTL--------------E-RQINDLIFIYKLVNNQIFCPD 361 (410)
Q Consensus 301 im~f~~~~~~~~~~~ti~g~~I~~ves~KYLGV~Ld~kL--------------s-~HI~~~ir~l~~l~R~~~~ls 361 (410)
. .. ++.|||+.+++.. + ..++..+..+++.++.+..++
T Consensus 225 f---~~--------------------~~~fLG~~i~~~gi~~~~~k~~~~~~~t~k~lr~flG~~~~yrrfi~~~~ 277 (557)
T 2zd1_A 225 K---EP--------------------PFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIK 277 (557)
T ss_dssp C---CS--------------------SEEETTEEECSSCEEESCCCCCCCSCEEHHHHHHHHHHHHHHTTTSTTCC
T ss_pred C---CC--------------------ceEEeeEEEccCcEEEcceecccccCCCHHHHHHHhhHHHhhhhhccchh
Confidence 3 11 2567777766554 2 455555566666666554444
No 5
>2zd1_B P51 RT; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} SCOP: e.8.1.2 PDB: 2ykm_B* 2ykn_B* 2ze2_B* 3bgr_B* 3ig1_B* 3irx_B* 3is9_B* 3qo9_B* 3v4i_B* 3v6d_B* 3v81_B* 3klf_B* 3kk1_B* 3kjv_B* 3kk2_B* 3kk3_B* 2be2_B* 1n5y_B* 1bqm_B* 1n6q_B* ...
Probab=98.15 E-value=1.7e-06 Score=88.55 Aligned_cols=110 Identities=16% Similarity=0.121 Sum_probs=69.8
Q ss_pred ccccCCCcchhhhhhhhhhhhhhcc----CCcccccccchhhhhhhcCChhhhhhHHHHHHHHHhhhhhcccccccccee
Q psy12268 225 SGCIQGGHMSGLLFSLFINDIAEIF----PGFNFWLFADDLKVALRVGGQREVDSMQSMLSRLYHWCSINKMELNIGKCM 300 (410)
Q Consensus 225 ~GVPQGs~LSPLLFnL~l~~L~~~l----~~i~~l~YADDivIis~s~s~~~~~~Lq~~Ld~L~~w~~~~GLkIN~~KTe 300 (410)
..+|||...||.+|..+|+.++..+ +++.+..|+||++|++.+ +...+...+..+...+..+||.+|++||.
T Consensus 147 ~vmPfGl~nsPa~fq~~m~~il~~~~~~~~~~~v~vY~DDIlI~s~~----~~~eh~~~l~~v~~~l~~~gL~l~~~Kc~ 222 (428)
T 2zd1_B 147 NVLPQGWKGSPAIFQSSMTKILEPFKKQNPDIVIYQYMDDLYVGSDL----EIGQHRTKIEELRQHLLRWGLTTPDKKHQ 222 (428)
T ss_dssp SBCCTTCTHHHHHHHHHHHHHHHHHHHHCTTCEEEEETTEEEEEECS----CHHHHHHHHHHHHHHHHHHHC--------
T ss_pred EeeCCCCcchHHHHHHHHHHHHHHHhhcCCCceEEEEecceEEecCC----cHHHHHHHHHHHHHHHHHhCCccChhHcc
Confidence 4589999999999999999888654 345688999999998732 23445566777778888999999999998
Q ss_pred EEEeecCCCCccceeeeCCccccccccccccceeecCcc--------------h-HHHHHHHHHHHHHhhhccCCC
Q psy12268 301 VMTYHRNKSPILASYDINGQALARCEQVRDLGVTFQKTL--------------E-RQINDLIFIYKLVNNQIFCPD 361 (410)
Q Consensus 301 im~f~~~~~~~~~~~ti~g~~I~~ves~KYLGV~Ld~kL--------------s-~HI~~~ir~l~~l~R~~~~ls 361 (410)
. .. ++.|||+.|++.. + ..++..+..+++.++.+.+++
T Consensus 223 ~---~~--------------------~~~fLG~~i~~~~i~~~~~ki~~~~~~t~k~lr~flG~~~yyrrFi~~~s 275 (428)
T 2zd1_B 223 K---EP--------------------PFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIK 275 (428)
T ss_dssp ---------------------------CTTCCEEECGGGCCCCCCCCCCCSSEEHHHHHHHHHHHHHHTTTCTTCC
T ss_pred c---cc--------------------eEEEeccEecCCceEecccccccccccCHHHHHHHhhhHHHHHHhcCCcc
Confidence 3 11 2466666666443 2 455555566666666555444
No 6
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B
Probab=98.07 E-value=4.5e-06 Score=87.99 Aligned_cols=72 Identities=15% Similarity=0.040 Sum_probs=58.3
Q ss_pred ccccCCCcchhhhhhhhhhhhhhcc----CCcccccccchhhhhhhcCChhhhhhHHHHHHHHHhhhhhcccccccccee
Q psy12268 225 SGCIQGGHMSGLLFSLFINDIAEIF----PGFNFWLFADDLKVALRVGGQREVDSMQSMLSRLYHWCSINKMELNIGKCM 300 (410)
Q Consensus 225 ~GVPQGs~LSPLLFnL~l~~L~~~l----~~i~~l~YADDivIis~s~s~~~~~~Lq~~Ld~L~~w~~~~GLkIN~~KTe 300 (410)
..+|||-.-||.+|..+|+.++..+ +++.+..|.||++|++.. +...+...|..+...+..+||.+|++||.
T Consensus 147 ~~mPfGl~napa~fq~~m~~il~~~~~~~~~~~v~~Y~DDIli~s~~----~~~eh~~~l~~v~~~l~~~gl~l~~~K~~ 222 (555)
T 1mu2_A 147 KVLPQGWKGSPAIFQHTMRQVLEPFRKANKDVIIIQYMDDILIASDR----TDLEHDRVVLQLKELLNGLGFSTPDEKFQ 222 (555)
T ss_dssp SBCCTTCTTHHHHHHHHHHHHHHHHHHHCTTSEEEEETTEEEEEECS----CHHHHHHHHHHHHHHHHHTTCBCCSTTEE
T ss_pred EEeCCCCCCcHHHHHHHHHHHHHHHHhhCCCcEEEEEecceEEecCC----CHHHHHHHHHHHHHHHHHcCCccCHHHhc
Confidence 4689999999999999999888654 456689999999998731 23455556777788888999999999984
No 7
>1ra6_A P3D, genome polyprotein; nucleotidyltransferase, RNA-dependent, polym terminus, transferase; 2.00A {Human poliovirus 1} SCOP: e.8.1.4 PDB: 1ra7_A* 2ily_A* 2ilz_A* 2im0_A* 2im1_A* 2im2_A* 2im3_A* 2ijf_A 3ol9_A* 3ol7_A 3ol8_A 3ol6_A* 3ola_A* 3olb_A* 1tql_A 1rdr_A 1raj_A 3ddk_A 3cdu_A 3cdw_A
Probab=96.01 E-value=0.0034 Score=64.73 Aligned_cols=105 Identities=11% Similarity=0.097 Sum_probs=67.5
Q ss_pred HHHHHHhCCCChHHHHHHHHHhhcceEEEeeCCccCCccccCccccCCCcc----hhhhhhhhhhhhhhc------cCCc
Q psy12268 183 RLTKLSAFGISGYLLQWIRNFLSGWIQIVRVGTSTSEPIHIPSGCIQGGHM----SGLLFSLFINDIAEI------FPGF 252 (410)
Q Consensus 183 Ll~~L~~~G~p~~li~lI~s~Ls~rs~~V~~~g~~S~~~~i~~GVPQGs~L----SPLLFnL~l~~L~~~------l~~i 252 (410)
+...|..+++++. ..++..++. + .+..+| ..+....|+|.|+|. .+++-++++.-+... +..+
T Consensus 249 ~~~il~~~~~~~~-~~l~~~l~~-~--~~~~~g---~v~~~~~G~PSG~p~Tsv~NSl~n~i~~~~~~~~~~~~~~~~~~ 321 (461)
T 1ra6_A 249 LKMVLEKIGFGDR-VDYIDYLNH-S--HHLYKN---KTYXVKGGMPSGXSGTSIFNSMINNLIIRTLLLKTYKGIDLDHL 321 (461)
T ss_dssp HHHHHHHTTTGGG-THHHHHHHE-E--EEEETT---EEEEEESCCCTBSTTHHHHHHHHHHHHHHHHHHHHSTTCCGGGC
T ss_pred HHHHHHHhCCCcH-HHHHHhhcC-e--EEEECC---EEEEEEeecCCCCCeeeeehHHHHHHHHHHHHHHcCCCCCCceE
Confidence 3467778888876 666666654 2 244556 467889999999765 344434444332211 1246
Q ss_pred ccccccchhhhhhhcCChhhhhhHHHHHHHHHhhhhhccccccc-cceeEEE
Q psy12268 253 NFWLFADDLKVALRVGGQREVDSMQSMLSRLYHWCSINKMELNI-GKCMVMT 303 (410)
Q Consensus 253 ~~l~YADDivIis~s~s~~~~~~Lq~~Ld~L~~w~~~~GLkIN~-~KTeim~ 303 (410)
.++.|.||.++..... + .++.+...+..+||++++ +||..+.
T Consensus 322 ~~~~yGDD~i~~~~~~-------~--~~~~l~~~~~~~Gl~~t~~dKt~~~~ 364 (461)
T 1ra6_A 322 KMIAYGDDVIASYPHE-------V--DASLLAQSGKDYGLTMTPADKSATFE 364 (461)
T ss_dssp EEEEETTEEEEEESSC-------C--CHHHHHHHHHHTTCCEESTTTCSSCC
T ss_pred EEEecCCceEEEeccc-------c--CHHHHHHHHHHcCceecccccCCCCC
Confidence 7889999999865321 1 245677777889999995 7988543
No 8
>1xr5_A Genome polyprotein; RNA-dependent RNA polymerase, transferase; 2.80A {Human rhinovirus 14} SCOP: e.8.1.4
Probab=95.96 E-value=0.0037 Score=64.51 Aligned_cols=100 Identities=14% Similarity=0.151 Sum_probs=64.1
Q ss_pred HHHHhCCCChHHHHHHHHHhhcceEEEeeCCccCCccccCccccCCCcc----hhhhhhhhhhhhhhc-c-----CCccc
Q psy12268 185 TKLSAFGISGYLLQWIRNFLSGWIQIVRVGTSTSEPIHIPSGCIQGGHM----SGLLFSLFINDIAEI-F-----PGFNF 254 (410)
Q Consensus 185 ~~L~~~G~p~~li~lI~s~Ls~rs~~V~~~g~~S~~~~i~~GVPQGs~L----SPLLFnL~l~~L~~~-l-----~~i~~ 254 (410)
..|..+++++. .++..++. + .+..+| ..+....|+|+|++. .+++-++++..+... . ..+.+
T Consensus 251 ~il~~~~~~~~--~l~~~l~~-~--~~~~~g---~v~~~~~G~PSG~p~Tsi~NSi~n~i~i~~a~~~~~~~~~~~~~~~ 322 (466)
T 1xr5_A 251 KVLTKLGFAGS--SLIQSICN-T--HHIFRD---EIYVVEGGMPSGCSGTSIFNSMINNIIIRTLILDAYKGIDLDKLKI 322 (466)
T ss_dssp HHHHHHTCTTT--THHHHHHS-E--EEECSS---SEEEEESCCCTTSSSHHHHHHHHHHHHHHHHHHHHCSSCCGGGCEE
T ss_pred HHHHHcCCChH--HHHHHhhC-c--EEEECC---EEEEEeCcCCCCCCchhchhhHHHHHHHHHHHHHHhcCCCccceEE
Confidence 45667778774 45555553 2 234444 567889999999654 555544544443221 1 24678
Q ss_pred ccccchhhhhhhcCChhhhhhHHHHHHHHHhhhhhccccccc-cceeE
Q psy12268 255 WLFADDLKVALRVGGQREVDSMQSMLSRLYHWCSINKMELNI-GKCMV 301 (410)
Q Consensus 255 l~YADDivIis~s~s~~~~~~Lq~~Ld~L~~w~~~~GLkIN~-~KTei 301 (410)
+.|.||.++..... . .++.+...+..+||.+++ +||..
T Consensus 323 ~~yGDD~iis~~~~----~-----~~~~l~~~~~~~Gl~~t~~dKt~~ 361 (466)
T 1xr5_A 323 LAYGDDLIVSYPYE----L-----DPQVLATLGKNYGLTITPPDKSET 361 (466)
T ss_dssp EEETTEEEEECSSC----C-----CHHHHHHHHTTTTCCEECCSSCSS
T ss_pred EEECCCCCceeCCC----C-----CHHHHHHHHHHcCCccChhhhcCC
Confidence 89999999865321 1 245566677889999998 89984
No 9
>2ckw_A RNA-directed RNA polymerase; hydrolase, nucleotide-binding, nucleotidyltransferase, covalent protein-RNA linkage, RNA elongation; 2.3A {Sapporo virus} PDB: 2uuw_A 2wk4_A 2uut_A
Probab=94.75 E-value=0.11 Score=54.18 Aligned_cols=106 Identities=13% Similarity=0.103 Sum_probs=55.3
Q ss_pred HHHHHhCCCChHHHH-HHHHHhhcceEEEeeCCccCCccccCccccCCCcchhhhhhh----hhhhhh-hc---------
Q psy12268 184 LTKLSAFGISGYLLQ-WIRNFLSGWIQIVRVGTSTSEPIHIPSGCIQGGHMSGLLFSL----FINDIA-EI--------- 248 (410)
Q Consensus 184 l~~L~~~G~p~~li~-lI~s~Ls~rs~~V~~~g~~S~~~~i~~GVPQGs~LSPLLFnL----~l~~L~-~~--------- 248 (410)
+..|..+..+..+.. ++.+++. +. .+..+|. .+....|+|=|+++-.++=+| ++..+. ..
T Consensus 259 ~~i~~~~~~~~~~~~~~~~~L~~-~~-i~~~~g~---v~~~~~G~PSG~p~Tsi~NSi~N~i~~~~a~~~~~~~~~~~~~ 333 (515)
T 2ckw_A 259 LAILERFAEPHPIVSCAIEALSS-PA-EGYVNDI---KFVTRGGLPSGMPFTSVVNSINHMIYVAAAILQAYESHNVPYT 333 (515)
T ss_dssp HHHHHTTBCCCTHHHHHHHHHHS-CC-EEEETTE---EEECSSSCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHhcCChHHHHHHHHHhC-Cc-eEEECCE---EEEEeCcccCCCCeeecchHHHHHHHHHHHHHHHHhhcCCCcc
Confidence 444555544444443 4445543 22 2345563 467899999999975432222 111110 00
Q ss_pred ---cCCcccccccchhhhhhhcCChhhhhhHHHHHHHHHhhhhhccccccc-cceeE
Q psy12268 249 ---FPGFNFWLFADDLKVALRVGGQREVDSMQSMLSRLYHWCSINKMELNI-GKCMV 301 (410)
Q Consensus 249 ---l~~i~~l~YADDivIis~s~s~~~~~~Lq~~Ld~L~~w~~~~GLkIN~-~KTei 301 (410)
+..+.++.|-||.++... ......++.+...+..+||.+++ +||..
T Consensus 334 ~~~~~~~~~~~yGDD~i~s~~-------~~~~~~~~~~~~~~~~~Gl~~t~~dKt~~ 383 (515)
T 2ckw_A 334 GNVFQVETIHTYGDDCMYSVC-------PATASIFHTVLANLTSYGLKPTAADKSDA 383 (515)
T ss_dssp SCHHHHSEEEEETTEEEEEEC-------HHHHHTHHHHHHHHHHHTCCC--------
T ss_pred cccccceEEEEECCceEEEec-------chhHHHHHHHHHHHHHcCcEEeccccCCC
Confidence 112467899999988542 12223356677777899999987 48875
No 10
>3uqs_A RNA-dependent RNA polymerase; transferase; 2.00A {Murine norovirus} PDB: 3ur0_A* 3upf_A* 3sfg_A* 3nah_A 3nai_A 3qid_A* 3sfu_A*
Probab=94.21 E-value=0.036 Score=57.93 Aligned_cols=105 Identities=12% Similarity=0.019 Sum_probs=65.9
Q ss_pred HHHHHHhCCCChHHHHHHH-HHhhcceEEEeeCCccCCccccCccccCCCcchhhh----hhhhhhhhhhc---cC----
Q psy12268 183 RLTKLSAFGISGYLLQWIR-NFLSGWIQIVRVGTSTSEPIHIPSGCIQGGHMSGLL----FSLFINDIAEI---FP---- 250 (410)
Q Consensus 183 Ll~~L~~~G~p~~li~lI~-s~Ls~rs~~V~~~g~~S~~~~i~~GVPQGs~LSPLL----FnL~l~~L~~~---l~---- 250 (410)
++..|..+..++.+..++. +++.. + .+.++| ..+.+..|+|.|+|+..++ -.|++...... ++
T Consensus 258 ~~~il~~~~~~~~~~~~~~~~Ll~~-s-~~~~~g---~v~~v~gG~PSG~p~Tsi~NSi~n~i~~~~a~~~~~g~~~~~f 332 (515)
T 3uqs_A 258 AGDIMVRLSPEPDLARVVMDDLLAP-S-LLDVGD---YKIVVEEGLPSGCPCTTQLNSLAHWILTLCAMVEVTRVDPDIV 332 (515)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHSC-E-EEECSS---EEEEECSSCCCCSTHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_pred HHHHHHHhccCCHHHHHHHHHhhcC-c-eEEECC---EEEEEcCCccCCCcceeeEchHHHHHHHHHHHHHhcCCCHHHh
Confidence 5667778888887776665 55532 2 344555 4578899999998764433 22222222111 11
Q ss_pred --CcccccccchhhhhhhcCChhhhhhHHHHHHHHHhhhhhccccccc-cceeE
Q psy12268 251 --GFNFWLFADDLKVALRVGGQREVDSMQSMLSRLYHWCSINKMELNI-GKCMV 301 (410)
Q Consensus 251 --~i~~l~YADDivIis~s~s~~~~~~Lq~~Ld~L~~w~~~~GLkIN~-~KTei 301 (410)
.+.+++|.||.++.+... -.++.|...+..+||++++ +||..
T Consensus 333 ~~~~~~~~yGDD~i~sv~~~---------~~~~~l~~~~~~~Gl~~t~~dKt~~ 377 (515)
T 3uqs_A 333 MQESEFSFYGDDEVVSTNLE---------LDMVKYTMALRRYGLLPTRADKEEG 377 (515)
T ss_dssp HHTEEEEEETTEEEEEESSC---------CCHHHHHHHHHHTTCCCCCTTCCSS
T ss_pred hhheEEEEeCCceEEEeccc---------cCHHHHHHHHHHhCcEeccccccCC
Confidence 234579999998855311 1345677778889999998 88874
No 11
>1khv_A RNA-directed RNA polymerase; RNA-dependent RNA polymerase, transferase; 2.50A {Rabbit hemorrhagic disease virus} SCOP: e.8.1.4 PDB: 1khw_A
Probab=92.77 E-value=0.17 Score=52.61 Aligned_cols=105 Identities=12% Similarity=0.086 Sum_probs=60.5
Q ss_pred HHHHHhCCCChHHHH-HHHHHhhcceEEEeeCCccCCccccCccccCCCcchhhhhhhhhhhhh---------h--ccC-
Q psy12268 184 LTKLSAFGISGYLLQ-WIRNFLSGWIQIVRVGTSTSEPIHIPSGCIQGGHMSGLLFSLFINDIA---------E--IFP- 250 (410)
Q Consensus 184 l~~L~~~G~p~~li~-lI~s~Ls~rs~~V~~~g~~S~~~~i~~GVPQGs~LSPLLFnL~l~~L~---------~--~l~- 250 (410)
...|..+..+..+.. ++.+++. +. .+..+|. .+....|+|=|+++--++ |..++.+. . .++
T Consensus 267 ~~il~~~~~~~~~~~~~~~~L~~-~~-~~~~~g~---v~~~~~G~PSG~p~Tsi~-NSi~N~i~i~~a~~~~~~~~g~~~ 340 (516)
T 1khv_A 267 IDILADCCEQTELTKSVVLTLKS-HP-MTILDAM---IVQTKRGLPSGMPFTSVI-NSICHWLLWSAAVYKSCAEIGLHC 340 (516)
T ss_dssp HHHHHTTBCCSHHHHHHHHHHHS-CC-EEECSSE---EECCSSCCCTTSTTHHHH-HHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHhcCccHHHHHHHHHhc-Cc-eEEECCE---EEEEeCCcCCCCCeecch-hHHHHHHHHHHHHHHHHHhcCCCH
Confidence 444555555554443 4444443 22 2344553 567899999999975432 22222211 0 011
Q ss_pred -----CcccccccchhhhhhhcCChhhhhhHHHHHHHHHhhhhhccccccc-cceeE
Q psy12268 251 -----GFNFWLFADDLKVALRVGGQREVDSMQSMLSRLYHWCSINKMELNI-GKCMV 301 (410)
Q Consensus 251 -----~i~~l~YADDivIis~s~s~~~~~~Lq~~Ld~L~~w~~~~GLkIN~-~KTei 301 (410)
.+.++.|-||.++... ......++.+...+..+||.+++ +||..
T Consensus 341 ~~~~~~~~~~~yGDD~i~s~~-------~~~~~~~~~~~~~~~~~Gl~~t~~dKt~~ 390 (516)
T 1khv_A 341 SNLYEDAPFYTYGDDGVYAMT-------PMMVSLLPAIIENLRDYGLSPTAADKTEF 390 (516)
T ss_dssp CCHHHHSCEEEETTEEEEEEC-------HHHHHTHHHHHHHHHHTTCCEEESSTTSC
T ss_pred HHHhhceeEEEecCceEEEec-------chhhhHHHHHHHHHHHcCcEeccccccCC
Confidence 3578899999998652 12233455677777889999885 68764
No 12
>3n6m_A RNA-dependent RNA polymerase; EV71, RDRP, GTP, transferase; HET: GTP; 2.50A {Human enterovirus 71} SCOP: e.8.1.4 PDB: 3n6l_A* 3n6n_A*
Probab=90.94 E-value=0.16 Score=52.42 Aligned_cols=104 Identities=13% Similarity=0.063 Sum_probs=64.9
Q ss_pred HHHHHHhCCCChHHHHHHHHHhhcceEEEeeCCccCCccccCccccCCCcchhhhhhh----hhhhhh-hc-----cCCc
Q psy12268 183 RLTKLSAFGISGYLLQWIRNFLSGWIQIVRVGTSTSEPIHIPSGCIQGGHMSGLLFSL----FINDIA-EI-----FPGF 252 (410)
Q Consensus 183 Ll~~L~~~G~p~~li~lI~s~Ls~rs~~V~~~g~~S~~~~i~~GVPQGs~LSPLLFnL----~l~~L~-~~-----l~~i 252 (410)
+...|..+|+++.+..++..++. + .+.++| ..+....|+|=|+|+..++=+| ++.... .. +..+
T Consensus 249 i~~il~~~~~~~~~~~l~~~l~~-~--~~~~~g---~v~~~~~G~PSG~p~Tsv~NSl~n~i~~~~a~~~~~~~~~~~~~ 322 (462)
T 3n6m_A 249 LELVLREIGYSEGAISLIEGINH-T--HHVYRN---KTYCVLGGMPSGCSGTSIFNSMINNIIIRALLIKTFKGIDLDEL 322 (462)
T ss_dssp HHHHHHHTTCCHHHHGGGHHHHE-E--EEEETT---EEEEEESSCCCSCSTTHHHHHHHHHHHHHHHHHHHSTTCCGGGC
T ss_pred HHHHHHHhCCCcHHHHHHHHhhC-c--EEEeCC---cEEEEeCCcCCCCCccccchHHHHHHHHHHHHHHHcCCCCcceE
Confidence 34556777888887666666653 2 333455 4567889999999875553222 121111 11 1246
Q ss_pred ccccccchhhhhhhcCChhhhhhHHHHHHHHHhhhhhccccccc-cceeE
Q psy12268 253 NFWLFADDLKVALRVGGQREVDSMQSMLSRLYHWCSINKMELNI-GKCMV 301 (410)
Q Consensus 253 ~~l~YADDivIis~s~s~~~~~~Lq~~Ld~L~~w~~~~GLkIN~-~KTei 301 (410)
.++.|-||.++-.... -.++.+...+..+||.+++ +||..
T Consensus 323 ~~~~yGDD~i~s~~~~---------~~~~~l~~~~~~~Gl~~t~~dKt~~ 363 (462)
T 3n6m_A 323 NMVAYGDDVLASYPFP---------IDCLELAKTGKEYGLTMTPADKSPC 363 (462)
T ss_dssp EEEEETTEEEEEESSC---------CCHHHHHHHHHHTTCEEEESSSSSS
T ss_pred EEEeecCceEEEeCcc---------cCHHHHHHHHHHcCceechhhccCC
Confidence 6889999999855321 1345666777889999986 47763
No 13
>2ijd_1 Picornain 3C, RNA-directed RNA polymerase; RNA-dependent RNA polymerase, picornavirus, protease, hydrolase, transferase; 3.40A {Human poliovirus 1} SCOP: b.47.1.4 e.8.1.4
Probab=84.87 E-value=0.6 Score=49.99 Aligned_cols=103 Identities=13% Similarity=0.121 Sum_probs=62.9
Q ss_pred HHHHHHHhCCCChHHHHHHHHHhhcceEEEeeCCccCCccccCccccCCCcchhhhhhhhhhhhhh------c-----cC
Q psy12268 182 VRLTKLSAFGISGYLLQWIRNFLSGWIQIVRVGTSTSEPIHIPSGCIQGGHMSGLLFSLFINDIAE------I-----FP 250 (410)
Q Consensus 182 ~Ll~~L~~~G~p~~li~lI~s~Ls~rs~~V~~~g~~S~~~~i~~GVPQGs~LSPLLFnL~l~~L~~------~-----l~ 250 (410)
.+...|..+++++. ..++..+.. + .+.++| ..+....|+|=|+|+-.+ +|..++.+.- . +.
T Consensus 431 ~~~~il~~~~~~~~-~~l~~~l~~-~--~~~~~g---~v~~~~~G~PSG~p~Tsi-~NSlvn~i~~~~a~~~~~~~~~~~ 502 (644)
T 2ijd_1 431 ALKMVLEKIGFGDR-VDYIDYLNH-S--HHLYKN---KTYCVKGGMPSGCSGTSI-FNSMINNLIIRTLLLKTYKGIDLD 502 (644)
T ss_dssp HHHHHHHHTTTGGG-THHHHHHHE-E--EEECSS---EEEEEESSCCSBSTTHHH-HHHHHHHHHHHHHHHHHSSSCCGG
T ss_pred HHHHHHHHhCCCCH-HHHHHhhhC-c--EEEECC---EEEEEeeecCCCCCceec-chHHHHHHHHHHHHHhhccCCCCc
Confidence 34555677787775 445554442 2 233455 457889999999996443 3332222221 1 12
Q ss_pred CcccccccchhhhhhhcCChhhhhhHHHHHHHHHhhhhhccccccc-cceeE
Q psy12268 251 GFNFWLFADDLKVALRVGGQREVDSMQSMLSRLYHWCSINKMELNI-GKCMV 301 (410)
Q Consensus 251 ~i~~l~YADDivIis~s~s~~~~~~Lq~~Ld~L~~w~~~~GLkIN~-~KTei 301 (410)
.+.++.|-||.++-.... + .++.+...+..+||.+++ +||..
T Consensus 503 ~~~~~~yGDD~i~s~~~~-------~--~~~~~~~~~~~~Gl~~t~~dKt~~ 545 (644)
T 2ijd_1 503 HLKMIAYGDDVIASYPHE-------V--DASLLAQSGKDYGLTMTPADKSAT 545 (644)
T ss_dssp GCEEEEETTEEEEEESSC-------C--CHHHHHHHHHHTTCCEEETTTCSS
T ss_pred eeEEEEeCCcEEEecccc-------c--CHHHHHHHHHHcCCEechhhccCC
Confidence 466789999999865321 1 356666777889999986 68874
No 14
>1xr7_A Genome polyprotein; RNA-dependent RNA polymerase, transferase; 2.30A {Human rhinovirus 16} SCOP: e.8.1.4 PDB: 1tp7_A* 1xr6_A
Probab=82.80 E-value=0.76 Score=47.12 Aligned_cols=100 Identities=10% Similarity=0.131 Sum_probs=61.0
Q ss_pred HHHHHHhCCCChHHHHHHHHHhhcceEEEeeCCccCCccccCccccCCCcchhhhhhhhhhhhh------hccC-----C
Q psy12268 183 RLTKLSAFGISGYLLQWIRNFLSGWIQIVRVGTSTSEPIHIPSGCIQGGHMSGLLFSLFINDIA------EIFP-----G 251 (410)
Q Consensus 183 Ll~~L~~~G~p~~li~lI~s~Ls~rs~~V~~~g~~S~~~~i~~GVPQGs~LSPLLFnL~l~~L~------~~l~-----~ 251 (410)
+...|..+|+++.++ ..+. .+ .+..+| ..+....|+|=|+|+-.++ |..++.+. ...+ .
T Consensus 250 i~~il~~~~~~~~l~---~~l~-~~--~~~~~g---~v~~~~~G~PSG~p~Tsi~-NSl~n~i~~~~a~~~~~~~~~~~~ 319 (460)
T 1xr7_A 250 LGMVLDNLSFNPTLI---NRLC-NS--KHIFKS---TYYEVEGGVPSGCSGTSIF-NSMINNIIIRTLVLDAYKHIDLDK 319 (460)
T ss_dssp HHHHHHHTTSCSSTT---HHHH-EE--EEEETT---EEEEEESSCCTTSTTHHHH-HHHHHHHHHHHHHHHHCSSCCGGG
T ss_pred HHHHHHhcCCCHHHH---HHHh-Cc--EEEECC---EEEEEeCCccCCCCccccc-hhHHHHHHHHHHHHHHhcCCCccc
Confidence 445566677776443 3333 22 234455 4578899999999965432 22222221 1111 3
Q ss_pred cccccccchhhhhhhcCChhhhhhHHHHHHHHHhhhhhccccccc-cceeE
Q psy12268 252 FNFWLFADDLKVALRVGGQREVDSMQSMLSRLYHWCSINKMELNI-GKCMV 301 (410)
Q Consensus 252 i~~l~YADDivIis~s~s~~~~~~Lq~~Ld~L~~w~~~~GLkIN~-~KTei 301 (410)
+.++.|-||.++-.... + .++.+...+..+||.+++ +||..
T Consensus 320 ~~~~~yGDD~i~s~~~~-------~--~~~~l~~~~~~~Gl~~t~~dKt~~ 361 (460)
T 1xr7_A 320 LKIIAYGDDVIFSYKYK-------L--DMEAIAKEGQKYGLTITPADKSSE 361 (460)
T ss_dssp CEEEEETTEEEEEESSC-------C--CHHHHHHTTGGGTCCEEESTTCSS
T ss_pred eeEEEecCceEEEeCCc-------C--CHHHHHHHHHHcCcEechhhhcCC
Confidence 67789999999865311 1 356777888899999984 78873
No 15
>3bso_A RNA dependent RNA polymerase; RNA-dependent RNA polymerase, viral replication, antiviral E inhibitor, helicase, hydrolase; HET: CTP; 1.74A {Norwalk virus} PDB: 3bsn_A* 3h5x_A* 3h5y_A* 1sh0_A 1sh2_A 1sh3_A 2b43_A
Probab=80.77 E-value=1.7 Score=45.09 Aligned_cols=104 Identities=17% Similarity=0.088 Sum_probs=59.7
Q ss_pred HHHHHhCCCChHHHHHHHHHhhcceEEEeeCCccCCccccCccccCCCcchhhhhhhhhhhhhhc--------cC-----
Q psy12268 184 LTKLSAFGISGYLLQWIRNFLSGWIQIVRVGTSTSEPIHIPSGCIQGGHMSGLLFSLFINDIAEI--------FP----- 250 (410)
Q Consensus 184 l~~L~~~G~p~~li~lI~s~Ls~rs~~V~~~g~~S~~~~i~~GVPQGs~LSPLLFnL~l~~L~~~--------l~----- 250 (410)
+..|..++..+.+...+..-+-.+. ....+| ..+....|+|=|+++-.++ |..++.+... ++
T Consensus 259 ~~il~~~~~~~~~~~~~~~~l~~~~-~~~~~g---~v~~~~~G~PSG~p~Tsi~-NSi~N~i~~~~a~~~~~~~~~~~~~ 333 (510)
T 3bso_A 259 LEIMVKFSSEPHLAQVVAEDLLSPS-VVDVGD---FTISINEGLPSGVPCTSQW-NSIAHWLLTLCALSEVTNLSPDIIQ 333 (510)
T ss_dssp HHHHHHTSSSHHHHHHHHHHHHSCE-EEECSS---EEEEECSSCCTTSTTHHHH-HHHHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHHhhcce-eeecCC---EEEEEeCcccCCCCeeecc-chHHHHHHHHHHHHHhcCCCHHHhh
Confidence 4456666666655543322222222 233444 2477899999999965443 2223332211 11
Q ss_pred -CcccccccchhhhhhhcCChhhhhhHHHHHHHHHhhhhhccccccc-cceeE
Q psy12268 251 -GFNFWLFADDLKVALRVGGQREVDSMQSMLSRLYHWCSINKMELNI-GKCMV 301 (410)
Q Consensus 251 -~i~~l~YADDivIis~s~s~~~~~~Lq~~Ld~L~~w~~~~GLkIN~-~KTei 301 (410)
.+.+++|-||.++..... -.++.+...+..+||.+++ +||..
T Consensus 334 ~~~~~~~yGDD~i~s~~~~---------~~~~~~~~~~~~~Gl~~t~~dKt~~ 377 (510)
T 3bso_A 334 ANSLFSFYGDDEIVSTDIK---------LDPEKLTAKLKEYGLKPTRPDKTEG 377 (510)
T ss_dssp HTEEEEEETTEEEEEESSC---------CCHHHHHHHHHHTTCCEECTTCCSS
T ss_pred heEEEEEecCceeeccCcc---------ccHHHHHHHHHHcCcCccccccccC
Confidence 134578999998854321 1235666677789999998 69874
No 16
>1u09_A Polyprotein; protein-DNA complex, RNA-dependent RNA polymerase, foot and disease virus, transferase; 1.91A {Foot-and-mouth disease virus} SCOP: e.8.1.4 PDB: 1wne_A 2e9r_X* 2e9t_A* 2e9z_A* 2ec0_A 3kmq_A 3kms_A 3koa_A 3kna_A 3klv_A 3nky_A 3nma_A 2f8e_X* 2d7s_A* 3nl0_A
Probab=80.38 E-value=1.1 Score=45.90 Aligned_cols=96 Identities=11% Similarity=0.160 Sum_probs=57.1
Q ss_pred CCCChHHHHHHHHHhhcceEEEeeCCccCCccccCccccCCCcchhhhhhh----hhhhhh-hccC-----Ccccccccc
Q psy12268 190 FGISGYLLQWIRNFLSGWIQIVRVGTSTSEPIHIPSGCIQGGHMSGLLFSL----FINDIA-EIFP-----GFNFWLFAD 259 (410)
Q Consensus 190 ~G~p~~li~lI~s~Ls~rs~~V~~~g~~S~~~~i~~GVPQGs~LSPLLFnL----~l~~L~-~~l~-----~i~~l~YAD 259 (410)
.|+++.+..++.+++. + .+.++| ..+.+..|+|-|++...++=++ ++.... ...+ .+.++.|-|
T Consensus 265 ~~~~~~~~~~l~~L~~-s--~~~~~g---~v~~~~~G~pSG~p~T~~~Nsl~n~~~~~~a~~~~~~~~~~~~~~~~~~GD 338 (476)
T 1u09_A 265 FGFHPNAEWILKTLVN-T--EHAYEN---KRITVEGGMPSGCSATSIINTILNNIYVLYALRRHYEGVELDTYTMISYGD 338 (476)
T ss_dssp GTCCHHHHHHHHTTTE-E--EEEEEE---EEEEEESSCCTTCTTHHHHHHHHHHHHHHHHHHHHSSSCCGGGCEEEEETT
T ss_pred cCCCHHHHHHHHHhhC-c--EEEECC---EEEEEeCcCCCCCcceecchHHHHHHHHHHHHHHHcCCCCccceeEEEEcC
Confidence 3667666566665543 2 223444 3467899999999975432222 222211 1112 256789999
Q ss_pred hhhhhhhcCChhhhhhHHHHHHHHHhhhhhcccccc-cccee
Q psy12268 260 DLKVALRVGGQREVDSMQSMLSRLYHWCSINKMELN-IGKCM 300 (410)
Q Consensus 260 DivIis~s~s~~~~~~Lq~~Ld~L~~w~~~~GLkIN-~~KTe 300 (410)
|.++..... . .++.+...+..+||+++ ++||.
T Consensus 339 D~i~~~~~~----~-----~~~~~~~~~~~~Gl~~t~~dKt~ 371 (476)
T 1u09_A 339 DIVVASDYD----L-----DFEALKPHFKSLGQTITPADKSD 371 (476)
T ss_dssp EEEEEESSC----C-----CHHHHHHHHHTTTCCEEESCCSS
T ss_pred CeeeecCcc----c-----CHHHHHHHHHHcCcEeccccccc
Confidence 999865321 1 24566777778999988 46774
No 17
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=69.24 E-value=8.5 Score=44.23 Aligned_cols=137 Identities=15% Similarity=0.072 Sum_probs=70.3
Q ss_pred HHhCCCChHHHHHHHHHhhcceEEEee-CCccCCccccCccccCCCcc-----hhhhhhhhhhhhhhcc--CCccccccc
Q psy12268 187 LSAFGISGYLLQWIRNFLSGWIQIVRV-GTSTSEPIHIPSGCIQGGHM-----SGLLFSLFINDIAEIF--PGFNFWLFA 258 (410)
Q Consensus 187 L~~~G~p~~li~lI~s~Ls~rs~~V~~-~g~~S~~~~i~~GVPQGs~L-----SPLLFnL~l~~L~~~l--~~i~~l~YA 258 (410)
|-..-+||.|..++.++= +-...+ +|.. +....=--+|.-. |-+++.|+-..+ ..+ ....+..|.
T Consensus 980 l~~~~lp~~~~~~~~~~r---s~~~~~~~g~~---~~~~~~~~mgng~tfel~s~~~~~~~~~~~-~~~~~~~~~~~~yg 1052 (1289)
T 3avx_A 980 LCELLLPPGWFEVLMDLR---SPKGRLPDGSV---VTYEKISSMGNGYTFELESLIFASLARSVC-EILDLDSSEVTVYG 1052 (1289)
T ss_dssp HHHTTSCHHHHHHHHHHS---CCEEECTTSCE---EECSBSCCTTSTTHHHHHHHHHHHHHHHHH-HHTTCCGGGCEEET
T ss_pred HHHHHcCHHHHHHHHhhc---CcccccCCCcE---eehhhhhcccCceeEeHHHHHHHHHHHHHH-HHhCCCCceEEEec
Confidence 334447886666655544 444444 3322 2222222345432 333344433332 212 235688899
Q ss_pred chhhhhhhcCChhhhhhHHHHHHHHHhhhhhccccccccceeEEEeecCCCCccceeeeCCccccccccccccceeecCc
Q psy12268 259 DDLKVALRVGGQREVDSMQSMLSRLYHWCSINKMELNIGKCMVMTYHRNKSPILASYDINGQALARCEQVRDLGVTFQKT 338 (410)
Q Consensus 259 DDivIis~s~s~~~~~~Lq~~Ld~L~~w~~~~GLkIN~~KTeim~f~~~~~~~~~~~ti~g~~I~~ves~KYLGV~Ld~k 338 (410)
||+++-+. +...+...+..+|+..|..||-.-. .-=++....-|.|+.+.+-
T Consensus 1053 ddii~~~~------------~~~~~~~~~~~~~f~~n~~ktf~~g----------------~frescg~~~~~g~dv~p~ 1104 (1289)
T 3avx_A 1053 DDIILPSC------------AVPALREVFKYVGFTTNTKKTFSEG----------------PFRESCGKHYYSGVDVTPF 1104 (1289)
T ss_dssp TEEEEEGG------------GHHHHHHHHHHTTCCBCGGGCBSSS----------------SEEEETTEEEETTEECCCC
T ss_pred CcEEeehh------------hhHHHHHHHHHhceecCCccccccC----------------cchhhhcccccCCccccce
Confidence 99988541 2233444456789999999997421 0011222334555555544
Q ss_pred ch----HHHHHHHHHHHHHhhhcc
Q psy12268 339 LE----RQINDLIFIYKLVNNQIF 358 (410)
Q Consensus 339 Ls----~HI~~~ir~l~~l~R~~~ 358 (410)
.- ..+.+++..+..+.+|.-
T Consensus 1105 y~~~~~~~~~~~~~~~n~~~~w~~ 1128 (1289)
T 3avx_A 1105 YIRHRIVSPADLILVLNNLYRWAT 1128 (1289)
T ss_dssp CCCSCCCSHHHHHHHHHHHHHHHE
T ss_pred EEecccccHHHHHHHHHhhccccc
Confidence 33 456666666777776543
No 18
>3u55_A Phosphoribosylaminoimidazole-succinocarboxamide S; saicar synthetase-like fold, ligase, ATP-binding, NOVO purine biosynthesis; 1.90A {Pyrococcus horikoshii} PDB: 3u54_A
Probab=35.99 E-value=10 Score=35.43 Aligned_cols=110 Identities=14% Similarity=0.047 Sum_probs=62.6
Q ss_pred HHHHHHHhCCCChHHHHHHHHHhhcceEE----------EeeCCccCCccccCccccCCCcchhhhhhhhhhhhhhccCC
Q psy12268 182 VRLTKLSAFGISGYLLQWIRNFLSGWIQI----------VRVGTSTSEPIHIPSGCIQGGHMSGLLFSLFINDIAEIFPG 251 (410)
Q Consensus 182 ~Ll~~L~~~G~p~~li~lI~s~Ls~rs~~----------V~~~g~~S~~~~i~~GVPQGs~LSPLLFnL~l~~L~~~l~~ 251 (410)
+++..|..+|+|.+++.. ++++.+. |.+.|..++++.-.-|++.|..|.+-+|..++-.=.. +
T Consensus 55 ~~F~~L~~~gi~th~i~~----~~~r~~lvkk~~~iPiE~VvR~y~tGS~~k~~gl~eg~~l~~Pi~e~~~K~d~~---~ 127 (238)
T 3u55_A 55 IFFKLLEEHGIKTHFIGV----AGGNRLIVEKLDMYPLEVVVRNVVAGSLKKRLPLPEGYELPEPIVELYYKNDEL---H 127 (238)
T ss_dssp HHHHHHHHTTCCBSEEEE----CSTTEEEEECCEECSEEEEEEEECCGGGGGTSSCCTTCEEEEEEEEEEECCTTT---T
T ss_pred HHHHHHHhcCCCCccccc----cccceeeeeeecCCceEEEEecccccchhcccCCCCCccCCCCccccccccccC---C
Confidence 456777888888876643 4455443 3455666666666779999999988777776532111 1
Q ss_pred cccccccchhhhhhhcCChhhhhhHH----HHHHHHHhhhhhccccccccceeE
Q psy12268 252 FNFWLFADDLKVALRVGGQREVDSMQ----SMLSRLYHWCSINKMELNIGKCMV 301 (410)
Q Consensus 252 i~~l~YADDivIis~s~s~~~~~~Lq----~~Ld~L~~w~~~~GLkIN~~KTei 301 (410)
-..+.+ +++..+. .+.++...+. ..-..+..++...||.|-..|-+.
T Consensus 128 Dp~I~~-~~~~~~g--i~~ee~~~i~~~al~i~~~~~~~~~~~GiiLvDtK~EF 178 (238)
T 3u55_A 128 DPMINY-YHAKVLG--ISLDEIKKIEEIALKVNEILKDYLAKKGIILVDFKLEF 178 (238)
T ss_dssp SCEECH-HHHHHTT--CCHHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECE
T ss_pred CCCCCH-HHHHHHh--ccccHHHHHHHHHHHHHHHHHHHHHHCCCEEEeeEEEE
Confidence 111111 1111111 1112222222 234556788889999888888774
No 19
>2z02_A Phosphoribosylaminoimidazole-succinocarboxamide synthase; 2-layer sandwich, ligase, purine biosynthesis, structural genomics; HET: ATP CIT; 2.03A {Methanocaldococcus jannaschii} PDB: 2yzl_A*
Probab=32.59 E-value=11 Score=35.34 Aligned_cols=111 Identities=14% Similarity=0.117 Sum_probs=61.9
Q ss_pred HHHHHHHhCCCChHHHHHHHHHhhcceEEEe----------eCCccCCccccCccccCCCcchhhhhhhhhhhhhhccCC
Q psy12268 182 VRLTKLSAFGISGYLLQWIRNFLSGWIQIVR----------VGTSTSEPIHIPSGCIQGGHMSGLLFSLFINDIAEIFPG 251 (410)
Q Consensus 182 ~Ll~~L~~~G~p~~li~lI~s~Ls~rs~~V~----------~~g~~S~~~~i~~GVPQGs~LSPLLFnL~l~~L~~~l~~ 251 (410)
+++..|...|+|.+++. .+.++.+.|. +.|..++++.-.-|++.|..|.|-+|..++-.=...-|.
T Consensus 62 ~~F~~L~~~giptH~i~----~~~~~~~lvkk~~~iPlEvVvR~~aaGS~~kryGl~eg~~L~~Pi~e~~~K~d~~~Dp~ 137 (242)
T 2z02_A 62 KLFEALEENGVKTHYIK----YIEPRYMIAKKVEIIPIEVIVRNIAAGSLCRRYPFEEGKELPFPIVQFDYKNDEYGDPM 137 (242)
T ss_dssp HHHHHHHHTTCCBSEEE----EETTTEEEEECEEECSEEEEEEEECCTHHHHHSSCCTTCEEEEEEEEEEECCGGGTCCB
T ss_pred HHHHHHHhCCCCceEEe----EeCCCEEEEEECccceEEEEEeeeeccccHHhcCCccCcCCCCCEEEEEecCCcCCCCc
Confidence 56777877888888775 3455555443 445555555445588999999887777765421111121
Q ss_pred cccccccchhhhhhhcCChhhhhhHHH----HHHHHHhhhhhccccccccceeE
Q psy12268 252 FNFWLFADDLKVALRVGGQREVDSMQS----MLSRLYHWCSINKMELNIGKCMV 301 (410)
Q Consensus 252 i~~l~YADDivIis~s~s~~~~~~Lq~----~Ld~L~~w~~~~GLkIN~~KTei 301 (410)
++ +|.++.....+.+....+.. .-+.+..++...|+.+-..|-+.
T Consensus 138 Is-----~~~~~~~~~~~~ee~~~i~~~al~i~~~l~~~~~~~Gi~LvD~K~EF 186 (242)
T 2z02_A 138 LN-----EDIAVALGLATREELNKIKEIALKVNEVLKKLFDEKGIILVDFKIEI 186 (242)
T ss_dssp CC-----HHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEECE
T ss_pred cC-----HHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEE
Confidence 11 12222111122233333333 34555777888888887766664
No 20
>3kre_A Phosphoribosylaminoimidazole-succinocarboxamide S; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 1.80A {Ehrlichia chaffeensis str}
Probab=27.42 E-value=15 Score=34.99 Aligned_cols=111 Identities=11% Similarity=0.045 Sum_probs=61.6
Q ss_pred HHHHHHHhCCCChHHHHHHHHHhhcceEEEe----------eCCccCCccccCccccCCCcchhhhhhhhhhhhhhccCC
Q psy12268 182 VRLTKLSAFGISGYLLQWIRNFLSGWIQIVR----------VGTSTSEPIHIPSGCIQGGHMSGLLFSLFINDIAEIFPG 251 (410)
Q Consensus 182 ~Ll~~L~~~G~p~~li~lI~s~Ls~rs~~V~----------~~g~~S~~~~i~~GVPQGs~LSPLLFnL~l~~L~~~l~~ 251 (410)
+++..|...|+|..++. .+.++.+.|. +.|..+.++.-.-|++.|..|.|-+|.+++-.=.. +
T Consensus 77 ~~F~~L~~~GIptHfi~----~~~~r~~lvkk~~~iPlEvVvR~~aaGS~~kr~Gl~eg~~L~~Pive~~~K~d~~---h 149 (263)
T 3kre_A 77 FLMKKLIDKGIKTHFIS----LLNQREQLVKKITIIPIEVVIRNLAAGNFSKRFQIADGTPFKSPIIEFYYKNDEL---S 149 (263)
T ss_dssp HHHHHHHHTTCCBSEEE----ECSSSEEEEECEEECSEEEEEEEECCHHHHHHHTCCTTCEEEEEEEEEEECCTTT---T
T ss_pred HHHHHHHhCCCCceeec----ccCCCeEEEEEcccccEEEEEeeeecchhhhhcCCcccccCCCCeEEEEecCccc---C
Confidence 56778888899888875 4566665544 44544444444458888888887777665533111 1
Q ss_pred cccccccchhhhhhhcCChhhhhhHHH----HHHHHHhhhhhccccccccceeE
Q psy12268 252 FNFWLFADDLKVALRVGGQREVDSMQS----MLSRLYHWCSINKMELNIGKCMV 301 (410)
Q Consensus 252 i~~l~YADDivIis~s~s~~~~~~Lq~----~Ld~L~~w~~~~GLkIN~~KTei 301 (410)
-..+.+ |-++.....+.+....+.. .-+.+..++...|+.|-..|-+.
T Consensus 150 Dp~Is~--~~~~~lg~~~~ee~~~i~~~al~i~~~l~~~~~~~GiiLvD~K~EF 201 (263)
T 3kre_A 150 DPMVSE--GHILSFQWLTNQELEKIKILSLKINNILSELFFNVGIKLVDFKLEF 201 (263)
T ss_dssp CCEECH--HHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEECE
T ss_pred CCCCCH--HHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEe
Confidence 111111 1122111122233333333 34555777888898887777664
No 21
>1kut_A Phosphoribosylaminoimidazole-succinocarboxamide synthase; structural genomics, saicar synthetase, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: d.143.1.1
Probab=23.85 E-value=16 Score=34.10 Aligned_cols=111 Identities=19% Similarity=0.173 Sum_probs=58.0
Q ss_pred HHHHHHHhCCCChHHHHHHHHHhhcceEEEe----------eCCccCCccccCccccCCCcchhhhhhhhhhhhhhccCC
Q psy12268 182 VRLTKLSAFGISGYLLQWIRNFLSGWIQIVR----------VGTSTSEPIHIPSGCIQGGHMSGLLFSLFINDIAEIFPG 251 (410)
Q Consensus 182 ~Ll~~L~~~G~p~~li~lI~s~Ls~rs~~V~----------~~g~~S~~~~i~~GVPQGs~LSPLLFnL~l~~L~~~l~~ 251 (410)
+++..|...|+|.+++. .+.++.+.|. +.|..++++.-.-|++.|..|.|-+|..++-.=...-|.
T Consensus 49 ~~F~~L~~~giptH~i~----~~~~~~~lvkk~~~iPlEvVvR~~a~GS~~kryGl~eg~~L~~Pi~e~~~K~d~~~Dp~ 124 (230)
T 1kut_A 49 ILMKYLSEKGIKTHLVE----YIPPRTLKVIPLKMFPLEVVVRLKKAGSFVRRYGGAEGEDLPVPLVEFFIKDDERHDPM 124 (230)
T ss_dssp HHHHHHHHTTCCBSEEE----EETTTEEEECCCEECSEEEEEEEECCHHHHHHHCCCTTCEEEEEEEEEEECCGGGTCCB
T ss_pred HHHHHHHhCCCCceEEe----ecCCCEEEEEEceeeeEEEEEEeeeccchHHhcCCccCcCCCCCEEEEEecCccCCCCC
Confidence 56677777788887774 4555555443 334444433334478888888877766665422111111
Q ss_pred cccccccchhhhhhhcCChhhhhhHHH----HHHHHHhhhhhccccccccceeE
Q psy12268 252 FNFWLFADDLKVALRVGGQREVDSMQS----MLSRLYHWCSINKMELNIGKCMV 301 (410)
Q Consensus 252 i~~l~YADDivIis~s~s~~~~~~Lq~----~Ld~L~~w~~~~GLkIN~~KTei 301 (410)
++ +|-++.....+.+....+.. .-+.+..++...|+.+-..|-+.
T Consensus 125 Is-----~~~~~~~~~~~~ee~~~i~~~al~i~~~l~~~~~~~Gi~LvD~K~EF 173 (230)
T 1kut_A 125 VC-----VDHLEILGIATKKQAEKMKEAAVKITLALKEFFERANFELWDIKYEF 173 (230)
T ss_dssp CC-----HHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECE
T ss_pred CC-----HHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEE
Confidence 11 11111111122233333333 34455677778888877666554
No 22
>3lgb_A DNA primase large subunit; Fe-S cluster, DNA-binding, DNA-directed RNA POL iron, iron-sulfur, metal-binding, nucleotidyltransferase; HET: DNA MSE EPE; 1.54A {Saccharomyces cerevisiae}
Probab=21.59 E-value=19 Score=32.68 Aligned_cols=41 Identities=5% Similarity=-0.099 Sum_probs=35.5
Q ss_pred hcCCCHHHHHHHHHhCCCChHHHHHHHHHhhcceEEEeeCC
Q psy12268 175 KRKNEKAVRLTKLSAFGISGYLLQWIRNFLSGWIQIVRVGT 215 (410)
Q Consensus 175 ~~~vdH~~Ll~~L~~~G~p~~li~lI~s~Ls~rs~~V~~~g 215 (410)
|++.+.+.|-..|..+|++...+.-|..+.....+.+.+.-
T Consensus 118 fr~~~~~~L~~~L~~~gv~~~~i~~I~~~~~~~~y~~AC~k 158 (194)
T 3lgb_A 118 FRDWSHERLSAELRSMKLTQAQIISVLDSCQKGEYTIACTK 158 (194)
T ss_dssp HHHSCHHHHHHHHHHTTCCHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhcCChhHHHHH
Confidence 56789999999999999999999999999988877776643
No 23
>2ywv_A Phosphoribosylaminoimidazole succinocarboxamide S; ADP complex, structural genomics, NPPSFA; HET: ADP; 1.75A {Geobacillus kaustophilus}
Probab=21.00 E-value=14 Score=34.75 Aligned_cols=111 Identities=20% Similarity=0.203 Sum_probs=58.8
Q ss_pred HHHHHHHhCCCChHHHHHHHHHhhcceEEEe----------eCCccCCccccCccccCCCcchhhhhhhhhhhhhhccCC
Q psy12268 182 VRLTKLSAFGISGYLLQWIRNFLSGWIQIVR----------VGTSTSEPIHIPSGCIQGGHMSGLLFSLFINDIAEIFPG 251 (410)
Q Consensus 182 ~Ll~~L~~~G~p~~li~lI~s~Ls~rs~~V~----------~~g~~S~~~~i~~GVPQGs~LSPLLFnL~l~~L~~~l~~ 251 (410)
+++..|...|+|.+++. .+.++.+.|. +.|..+.++.-.-|++.|..|.|-+|.+++-.=...-|
T Consensus 59 ~~F~~L~~~giptH~i~----~~~~~~~lvkk~~~iPlEvVvR~~aaGS~~kryGl~eg~~L~~Pi~e~~~K~d~~~Dp- 133 (244)
T 2ywv_A 59 LLFLKLREAGIANHFIE----KLSPTEQLVRRVTIIPLEVVVRNVVAGSLAKRIGLEEGTPLEAPLVEFYYKNDDLGDP- 133 (244)
T ss_dssp HHHHHHHHTTCCBSEEE----ECSSSEEEEECCEECSEEEEEEEEECHHHHHHHTCCTTEEEEEEEEEEEECCGGGTCC-
T ss_pred HHHHHHHhCCCCceEec----ccCCCEEEEEEcccccEEEEEEeeeccccHHhcCCccCcCCCCCEEEEEecCCcCCCC-
Confidence 56777777888887774 3455555443 33444433333447888888887777666542211111
Q ss_pred cccccccchhhhhhhcCChhhhhhHHH----HHHHHHhhhhhccccccccceeE
Q psy12268 252 FNFWLFADDLKVALRVGGQREVDSMQS----MLSRLYHWCSINKMELNIGKCMV 301 (410)
Q Consensus 252 i~~l~YADDivIis~s~s~~~~~~Lq~----~Ld~L~~w~~~~GLkIN~~KTei 301 (410)
.+.+ |++.. ....+.+....+.. .-+.+..++...|+.|-..|-+.
T Consensus 134 --~I~~-~~~~~-~~~~~~ee~~~i~~~al~i~~~l~~~~~~~Gi~LvD~K~EF 183 (244)
T 2ywv_A 134 --LLLE-DHIFI-LKLASREEVAALKQAALAVNDVLRLHFAERNVRLIDFKLEF 183 (244)
T ss_dssp --EECH-HHHHH-HTSSCHHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEECE
T ss_pred --CCCH-HHHHH-hccCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEE
Confidence 1111 11211 11122233333333 34555777888888877666554
Done!