RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12268
(410 letters)
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
Length = 2084
Score = 82.1 bits (202), Expect = 1e-16
Identities = 62/182 (34%), Positives = 95/182 (52%), Gaps = 3/182 (1%)
Query: 4 KKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKE 63
KK E+KKK K +EK K K++ EE + + K K + K + + KKK + K+
Sbjct: 1284 KKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKK 1343
Query: 64 KNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEE 123
+ + E + ++K + + +KEE KK+A+ KKK + K+K +K EE
Sbjct: 1344 AAEAAKAEAEAAADEAEAAEEKAE-AAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEE 1402
Query: 124 EKKKEAEEKKKKRTKKK--EKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKA 181
+KKK E KK KKK E K K++ +E KKK ++ KK KKK EE +K E+A
Sbjct: 1403 DKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEA 1462
Query: 182 VR 183
+
Sbjct: 1463 KK 1464
Score = 78.3 bits (192), Expect = 2e-15
Identities = 64/180 (35%), Positives = 97/180 (53%), Gaps = 2/180 (1%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKK 61
K K+E KKK + K +EK K K++ EE + K E K K + +E KKK +K
Sbjct: 1371 KKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEK 1430
Query: 62 KEKNKNKNRKEEKKKKKKRRTKKKEKNK--NKSRKEEKKKEAEEEKKKTKNKEKNKNKSR 119
K+ ++ K + EE KK + + K +E K +K E+ K+A+E KKK + +K +
Sbjct: 1431 KKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKK 1490
Query: 120 KEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNE 179
K EE KKK E KK KKK K+ + ++ +E KK ++ KK KK EE+K+ +E
Sbjct: 1491 KAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADE 1550
Score = 78.3 bits (192), Expect = 2e-15
Identities = 59/180 (32%), Positives = 91/180 (50%), Gaps = 3/180 (1%)
Query: 4 KKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKE 63
K EEKKK + + K +E K K++ EE + K KK + + E K +
Sbjct: 1297 KAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAA 1356
Query: 64 KNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEE 123
++ + +KK+ KK+ + K + EEKKK A+E KKK + +K ++ +K
Sbjct: 1357 DEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKK-ADEAKKKAEEDKKKADELKKAAA 1415
Query: 124 EKKKEAEEKKKKRTKKK--EKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKA 181
KKK E KKK KKK E K ++ +E KKK ++ KK + KKK EE +K ++A
Sbjct: 1416 AKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEA 1475
Score = 74.8 bits (183), Expect = 2e-14
Identities = 57/181 (31%), Positives = 95/181 (52%), Gaps = 1/181 (0%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKK 61
K K EE KK + + K +E K +++ E+ K E K + E E + +
Sbjct: 1308 KKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAE 1367
Query: 62 KEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKE 121
+ K + K++ KK+ +KK+ ++ K + EE KK+A+E KK K+K +K
Sbjct: 1368 AAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKA 1427
Query: 122 EEEKKKEAEEKKKKRTKKKEKNKNKS-RKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEK 180
EE+KK + +KK + KK ++ K K+ ++ EE KKK ++ KK KKK EE +K ++
Sbjct: 1428 EEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADE 1487
Query: 181 A 181
A
Sbjct: 1488 A 1488
Score = 74.8 bits (183), Expect = 3e-14
Identities = 57/185 (30%), Positives = 101/185 (54%), Gaps = 7/185 (3%)
Query: 4 KKEEKKKKKKRRTKKKEKNKNKSRKEEEEEK----RTKKKEKNKKNKNKSRKEEEKKK-- 57
K E + + +++ + +KEE ++K + K +EK K ++ K + EE+KKK
Sbjct: 1349 KAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKAD 1408
Query: 58 RTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNK 117
KK K K + +KK ++K++ + +K +++K ++ K+ EE KK + +K +
Sbjct: 1409 ELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEE 1468
Query: 118 SRKEEEEKKKEAEEKKKKRTKKK-EKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKR 176
++K +E KKK E KK KKK E+ K K+ + ++ E KKK + KK KK +E +
Sbjct: 1469 AKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAK 1528
Query: 177 KNEKA 181
K E+A
Sbjct: 1529 KAEEA 1533
Score = 73.6 bits (180), Expect = 6e-14
Identities = 68/191 (35%), Positives = 96/191 (50%), Gaps = 14/191 (7%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNK---SRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKR 58
K K EE KKK KK E+ K ++ E E + + K + +KEE KKK
Sbjct: 1321 KKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKA 1380
Query: 59 TKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKS 118
K+K + K + +E KKK + KK ++ K + KK+A+E KKK + K+K
Sbjct: 1381 DAAKKKAEEKKKADEAKKKAEEDKKKADELK---KAAAAKKKADEAKKKAEEKKKADEAK 1437
Query: 119 RKEEEEKK-----KEAEEKKKKRTKKK---EKNKNKSRKEEEEEEKKKKKKKKKKKRTKK 170
+K EE KK K+AEE KK KK E K K++ EE KK + KKK + KK
Sbjct: 1438 KKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKK 1497
Query: 171 KEEEKRKNEKA 181
K +E +K +A
Sbjct: 1498 KADEAKKAAEA 1508
Score = 73.6 bits (180), Expect = 7e-14
Identities = 64/187 (34%), Positives = 105/187 (56%), Gaps = 7/187 (3%)
Query: 4 KKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKE 63
KK E+KKK KK E++K K+ + ++ KK ++ KK + +K +E KK+ ++ +
Sbjct: 1385 KKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAK 1444
Query: 64 KNKNKNRKEEKKKKKKRRTKKKEKNKNKS---RKEEKKKEAEEEKKKTKNKEKNKNKSRK 120
K +K E+ KK + KK E+ K +K E+ K+A+E KKK + +K ++++K
Sbjct: 1445 KADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKK 1504
Query: 121 EEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKK----KKKRTKKKEEEKR 176
E KKK E KK + KK ++ K ++ +E KK ++KKK KK KK EEK+
Sbjct: 1505 AAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKK 1564
Query: 177 KNEKAVR 183
K E+A +
Sbjct: 1565 KAEEAKK 1571
Score = 73.6 bits (180), Expect = 7e-14
Identities = 66/188 (35%), Positives = 99/188 (52%), Gaps = 9/188 (4%)
Query: 2 KNKKEEKKKK---KKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKR 58
K K EE KK K + + ++ E ++ K++ K K + K + EE+KK
Sbjct: 1335 KKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKAD 1394
Query: 59 TKKKEKNKNKNRKEEKKKK---KKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNK 115
KK+ ++K + +E KK KK+ + K+K + K + +E KK+AEE KK + K+K +
Sbjct: 1395 EAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAE 1454
Query: 116 NKSRKEEEEKKKEAEEKKKKRTKKK--EKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEE 173
+K EE KKK E KK KKK E K K++ EE KKK + KK KKK +
Sbjct: 1455 EA-KKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKAD 1513
Query: 174 EKRKNEKA 181
E +K E+A
Sbjct: 1514 EAKKAEEA 1521
Score = 71.3 bits (174), Expect = 4e-13
Identities = 64/188 (34%), Positives = 103/188 (54%), Gaps = 9/188 (4%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKK 61
+ + E+K + + K++ K K + K++ EEK+ + K K ++K + +E KK K
Sbjct: 1358 EAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAK 1417
Query: 62 KEKNKNKNRKEEKKKKKKRRTKKKEKNKNKS--RKEEKKKEAEEEKKKTKNKEKNKNKSR 119
K+ ++ K + EEKKK + + K +E K +K E+ K+AEE KKK + +K +
Sbjct: 1418 KKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKK 1477
Query: 120 KEEEEKK-----KEAEEKKKK--RTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKE 172
K EE KK K+AEE KKK KK + K K+ + ++ EE KK + KK + KK +
Sbjct: 1478 KAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKAD 1537
Query: 173 EEKRKNEK 180
E K+ EK
Sbjct: 1538 EAKKAEEK 1545
Score = 70.9 bits (173), Expect = 5e-13
Identities = 62/179 (34%), Positives = 103/179 (57%), Gaps = 7/179 (3%)
Query: 4 KKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKE 63
KK E+ KKK KK K K+ + +++ + KK ++ KK +++K +E KK+ ++ +
Sbjct: 1398 KKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAK 1457
Query: 64 KNKNKNRKEEKKKK----KKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSR 119
K + +K E+ KK KK+ + K+ ++ K + EE KK+A+E KK + K+K +
Sbjct: 1458 KAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKK 1517
Query: 120 KEEEEKKKE---AEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEK 175
EE +K E AEE KK KK + K K+ + ++ EE KK ++KKK + KK EE+K
Sbjct: 1518 AEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDK 1576
Score = 70.9 bits (173), Expect = 5e-13
Identities = 57/180 (31%), Positives = 93/180 (51%), Gaps = 2/180 (1%)
Query: 6 EEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKN 65
EE +K ++ R + + + EE + KK + KK ++++K EEKKK + K+K
Sbjct: 1252 EEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKA 1311
Query: 66 KNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEK 125
+ + +E KKK + KK + K K+ + +K EA + + + E + + E EK
Sbjct: 1312 EEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEK 1371
Query: 126 KKEAEEKKKKRTKKK--EKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKAVR 183
KKE +KK KKK EK K K++ EE+KKK + KK KKK +E +K + +
Sbjct: 1372 KKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKK 1431
Score = 70.9 bits (173), Expect = 5e-13
Identities = 58/186 (31%), Positives = 106/186 (56%), Gaps = 3/186 (1%)
Query: 4 KKEEKKKKKKRRTKKKEKNKNKS---RKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTK 60
KK E+ K K KK E+ K K +K+E EEK+ ++ K + +NK + EE KK +
Sbjct: 1613 KKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEE 1672
Query: 61 KKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRK 120
K+K + + EE +KK KK+ + K+ + +KK+ E++K + K + +NK +
Sbjct: 1673 DKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKA 1732
Query: 121 EEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEK 180
EE +K+ E ++KK + KK E+ K K ++EEEKK ++ +K+K+ ++E ++ ++
Sbjct: 1733 EEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKR 1792
Query: 181 AVRLTK 186
+ + K
Sbjct: 1793 RMEVDK 1798
Score = 69.8 bits (170), Expect = 1e-12
Identities = 66/186 (35%), Positives = 105/186 (56%), Gaps = 9/186 (4%)
Query: 2 KNKKEEKKKKKKRRT---KKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKR 58
K EE K R+ KK E+ + + + EE++ K E+ KK + K EE KK
Sbjct: 1569 AKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKA 1628
Query: 59 TKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKS 118
++K+K + +KE ++KKK KK E+ +NK + E+ K+AEE+KKK + +K +
Sbjct: 1629 EEEKKKVEQLKKKEAEEKKKAEELKKAEE-ENKIKAAEEAKKAEEDKKKAEEAKKAEEDE 1687
Query: 119 RKEEEEKKKEAEEKKK-----KRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEE 173
+K E KKEAEE KK K+ +++K + +K EEE + K ++ KK+ + KKK E
Sbjct: 1688 KKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAE 1747
Query: 174 EKRKNE 179
E +K+E
Sbjct: 1748 EAKKDE 1753
Score = 69.8 bits (170), Expect = 1e-12
Identities = 62/181 (34%), Positives = 107/181 (59%), Gaps = 4/181 (2%)
Query: 4 KKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKE 63
KK E+ + ++ +E+ K K+ + ++ E+ K E+ KK + + +K E+ KK+ +++
Sbjct: 1587 KKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEK 1646
Query: 64 KNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEE 123
K + +K E++ K K + K+ ++K + EE KK E+EKK + +K +++K EE
Sbjct: 1647 KKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEE 1706
Query: 124 EKKKEAEEKKKKRTKKKEKNKNKSR----KEEEEEEKKKKKKKKKKKRTKKKEEEKRKNE 179
KKKEAEEKKK KK + +NK + K+E EE+KKK ++ KK + KKK +K E
Sbjct: 1707 LKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEE 1766
Query: 180 K 180
+
Sbjct: 1767 E 1767
Score = 69.0 bits (168), Expect = 2e-12
Identities = 54/179 (30%), Positives = 102/179 (56%), Gaps = 3/179 (1%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKK 61
K K +E KK ++ + +++K +++K EE++ +K + K ++R EE K ++
Sbjct: 1545 KKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEE 1604
Query: 62 KEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKE 121
K+ + +K E+ K K KK E+ K K + +KK+ E++K + K + +NK +
Sbjct: 1605 KKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAA 1664
Query: 122 EEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEK 180
EE KK E ++KK + KK E+++ +K E +K+ ++ KK ++ KK+ EEK+K E+
Sbjct: 1665 EEAKKAEEDKKKAEEAKKAEEDE---KKAAEALKKEAEEAKKAEELKKKEAEEKKKAEE 1720
Score = 68.2 bits (166), Expect = 4e-12
Identities = 48/178 (26%), Positives = 96/178 (53%), Gaps = 1/178 (0%)
Query: 4 KKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKE 63
K EE++K ++ R + K +K EE +K ++ +K ++ +N + ++ R
Sbjct: 1207 KAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFA 1266
Query: 64 KNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEE 123
+ + + EE +K + + +++K ++++K E+KK+A+E KKK + +K +K EE
Sbjct: 1267 RRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEE 1326
Query: 124 EKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKA 181
KKK A+ KKK + K+ + + E ++ + ++K + KKKEE K+K + A
Sbjct: 1327 AKKK-ADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAA 1383
Score = 67.9 bits (165), Expect = 4e-12
Identities = 44/177 (24%), Positives = 91/177 (51%)
Query: 4 KKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKE 63
K EE +K + + + K +++K+ EE K+ +++ N++ + R +
Sbjct: 1213 KAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAI 1272
Query: 64 KNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEE 123
K + + +E KK ++++ + K + +K ++ K+ EE KK +K +++K+ +
Sbjct: 1273 KAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKAD 1332
Query: 124 EKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEK 180
KK+AEE KK K + + + + E EEK + +KKK++ KK + K+K E+
Sbjct: 1333 AAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEE 1389
Score = 67.1 bits (163), Expect = 9e-12
Identities = 68/180 (37%), Positives = 106/180 (58%), Gaps = 2/180 (1%)
Query: 4 KKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKE 63
++E+K K ++ + ++ K K + K+ EEEK+ ++ K K+ + K + EE KK + K
Sbjct: 1602 EEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKI 1661
Query: 64 KNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEE 123
K + +K E+ KKK KK E+++ K E KKEAEE KK + K+K + +K EE
Sbjct: 1662 KAAEEAKKAEEDKKKAEEAKKAEEDEKK-AAEALKKEAEEAKKAEELKKKEAEEKKKAEE 1720
Query: 124 EKKKEAEEKKKKRTKKKEKNKNKSRKEE-EEEEKKKKKKKKKKKRTKKKEEEKRKNEKAV 182
KK E E K K KKE ++K + EE +++E++KKK KK +KK EE RK ++AV
Sbjct: 1721 LKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAV 1780
Score = 66.3 bits (161), Expect = 1e-11
Identities = 54/183 (29%), Positives = 106/183 (57%), Gaps = 3/183 (1%)
Query: 4 KKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKE 63
KK ++ KK + + K E K + K+ EE+K+ ++ +K +++KN + ++ E+ K+ ++
Sbjct: 1534 KKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEAR 1593
Query: 64 KNKNKNRKEEKKKKKKRRTKKKEKNKNKS---RKEEKKKEAEEEKKKTKNKEKNKNKSRK 120
+ EE+KK K KK E+ K K+ +K E++K+ E+ KK + +EK K + K
Sbjct: 1594 IEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELK 1653
Query: 121 EEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEK 180
+ EE+ K ++ K+ ++ +K +++K EE+E+K + KK+ + KK EE K+K +
Sbjct: 1654 KAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAE 1713
Query: 181 AVR 183
+
Sbjct: 1714 EKK 1716
Score = 65.5 bits (159), Expect = 2e-11
Identities = 62/195 (31%), Positives = 107/195 (54%), Gaps = 15/195 (7%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKK 61
K E KKK + + ++ K ++++K EE +K + K+ +K K K+ E+ K+ ++
Sbjct: 1503 KKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEE 1562
Query: 62 KEKNKNKNRKEEKKKKKKRRTKKKEK-------------NKNKSRKEEKKKEAEEEKKKT 108
K+K + + EE K R+ ++ +K + K K E+ K+AEE K K
Sbjct: 1563 KKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKA 1622
Query: 109 KNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRT 168
+ +K + + +K E+ KKKEAEEKKK KK + +NK + EE KK ++ KKK +
Sbjct: 1623 EELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKA--AEEAKKAEEDKKKAEEA 1680
Query: 169 KKKEEEKRKNEKAVR 183
KK EE+++K +A++
Sbjct: 1681 KKAEEDEKKAAEALK 1695
Score = 65.5 bits (159), Expect = 3e-11
Identities = 58/175 (33%), Positives = 99/175 (56%), Gaps = 8/175 (4%)
Query: 4 KKEEKKKKKKRRTKKKEKNKNKS---RKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTK 60
K EE+KKK ++ KK+ + K K+ +K EEE K +E K ++K + EE KK
Sbjct: 1627 KAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEED 1686
Query: 61 KKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRK-----EEKKKEAEEEKKKTKNKEKNK 115
+K+ + ++ E+ KK + KK+ + K K+ + EE K +AEE KK+ + +K
Sbjct: 1687 EKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKA 1746
Query: 116 NKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKK 170
+++K+EEEKKK A KK++ K +E K K EEE +++ +K++ + + K
Sbjct: 1747 EEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIK 1801
Score = 65.2 bits (158), Expect = 4e-11
Identities = 60/187 (32%), Positives = 101/187 (54%), Gaps = 4/187 (2%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKK 61
K K EEKKK + + K +E K K++ EE + K E+ KK +++K +E KK+ ++
Sbjct: 1424 KKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAK--KAEEAKKKAEEAKKADEAKKKAEE 1481
Query: 62 KEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKE 121
+K +K E+ KKK KK + K K+ + +K +EA++ + K +E K K+
Sbjct: 1482 AKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKK 1541
Query: 122 EEEKKKEAEEKKKKRTKKKEKNKN--KSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNE 179
EEKKK E KK + KK E+ K +++K EE++ +K ++ KK + + EE K
Sbjct: 1542 AEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLY 1601
Query: 180 KAVRLTK 186
+ + K
Sbjct: 1602 EEEKKMK 1608
Score = 64.8 bits (157), Expect = 4e-11
Identities = 54/172 (31%), Positives = 99/172 (57%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKK 61
K ++E+KK ++ ++ + +EK K + K+ EEE + K E+ KK + +K EE KK +
Sbjct: 1627 KAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEED 1686
Query: 62 KEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKE 121
++K +KE ++ KK KKKE + K +E KK E E + K + K++ + +K
Sbjct: 1687 EKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKA 1746
Query: 122 EEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEE 173
EE KK E E+KK KK+E+ K + ++E+E +++ ++ +KR + ++
Sbjct: 1747 EEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDK 1798
Score = 64.8 bits (157), Expect = 4e-11
Identities = 58/178 (32%), Positives = 101/178 (56%), Gaps = 3/178 (1%)
Query: 4 KKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKE 63
KK ++ KKK KK ++ K K+ + ++ ++ KK E+ KK + +K EE KK + K+
Sbjct: 1418 KKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKK 1477
Query: 64 KNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEE 123
K + + +E KKK + KK ++ K + ++K EA++ ++ K E K + K+ +
Sbjct: 1478 KAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKAD 1537
Query: 124 EKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKA 181
E KK AEEKKK KK + K+ EE+++ ++ KK ++ K +K EE +K E+A
Sbjct: 1538 EAKK-AEEKKKADELKKAEELKKA--EEKKKAEEAKKAEEDKNMALRKAEEAKKAEEA 1592
Score = 64.4 bits (156), Expect = 5e-11
Identities = 61/182 (33%), Positives = 98/182 (53%), Gaps = 4/182 (2%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKK 61
K K EE KK ++ + K +E K K++ EE + K E KK + +K +E KK +
Sbjct: 1450 KKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAK-KADEAKKKAEEAKKKADEAKKAAEA 1508
Query: 62 KEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKT---KNKEKNKNKS 118
K+K + EE KK + + ++ K ++++K E+KK+A+E KK K +EK K +
Sbjct: 1509 KKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEE 1568
Query: 119 RKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKN 178
K+ EE K A K ++ K +E + K EEE+K K ++ KK + K K EE +K
Sbjct: 1569 AKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKA 1628
Query: 179 EK 180
E+
Sbjct: 1629 EE 1630
Score = 63.6 bits (154), Expect = 9e-11
Identities = 64/191 (33%), Positives = 103/191 (53%), Gaps = 14/191 (7%)
Query: 4 KKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKE 63
KK E+ KK K +E K K+ EE+K+ + +K ++ K K++ ++ + +++
Sbjct: 1516 KKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEED 1575
Query: 64 KNKNKNRKEEKKKKKKRRTKKKEK--NKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKE 121
KN + EE KK ++ R ++ K + K K E+ K+AEE K K + +K + + +K
Sbjct: 1576 KNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKV 1635
Query: 122 EEEKKKEAEEKKKKRTKKKEKNKNKSRKEEE---EEEKKKK---------KKKKKKKRTK 169
E+ KKKEAEEKKK KK + +NK + EE EE KKK +KK + K
Sbjct: 1636 EQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALK 1695
Query: 170 KKEEEKRKNEK 180
K+ EE +K E+
Sbjct: 1696 KEAEEAKKAEE 1706
Score = 62.9 bits (152), Expect = 2e-10
Identities = 61/187 (32%), Positives = 103/187 (55%), Gaps = 8/187 (4%)
Query: 5 KEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEK 64
K+ ++KKK KK E++KN + ++ EE K+ ++ + K +++ K + KK E+
Sbjct: 1558 KKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEE 1617
Query: 65 NKNKN---RKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKE 121
K K +K E++KKK + KKKE + K +E KK E E + K + +K + +K
Sbjct: 1618 AKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKA 1677
Query: 122 EEEKKKEAEEKKKKRTKKKEKNKNKS-----RKEEEEEEKKKKKKKKKKKRTKKKEEEKR 176
EE KK E +EKK KKE + K +KE EE++K ++ KK +++ K EE K+
Sbjct: 1678 EEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKK 1737
Query: 177 KNEKAVR 183
+ E+ +
Sbjct: 1738 EAEEDKK 1744
Score = 61.3 bits (148), Expect = 5e-10
Identities = 58/192 (30%), Positives = 102/192 (53%), Gaps = 12/192 (6%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKK 61
K K EE KK + + K +E K + K++ EE + K ++ KK +++K +E KK+ ++
Sbjct: 1437 KKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAK--KADEAKKKAEEAKKADEAKKKAEE 1494
Query: 62 KEKNKNKNRKEEKKKKKKRRTKKKEKNK--NKSRKEEKKKEAEEEKK--------KTKNK 111
+K ++ +K + KKK KK E+ K ++++K E+ K+A+E KK + K
Sbjct: 1495 AKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKA 1554
Query: 112 EKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKK 171
E+ K K++ E+ K+AEE K +K E+ K EE K +++KK K KK
Sbjct: 1555 EELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKK 1614
Query: 172 EEEKRKNEKAVR 183
EE + + ++
Sbjct: 1615 AEEAKIKAEELK 1626
Score = 61.3 bits (148), Expect = 6e-10
Identities = 60/186 (32%), Positives = 95/186 (51%), Gaps = 6/186 (3%)
Query: 4 KKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKE 63
KK E+ KKK KK + K K+ + ++ E+ K E K + K E +K + KK +
Sbjct: 1490 KKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKAD 1549
Query: 64 KNKNKN--RKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKE 121
+ K +K E+KKK + K +E RK E+ K+AEE + + K + K K
Sbjct: 1550 ELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKA 1609
Query: 122 EEEKKKEAEEKKKKRTKKKEKNKNK----SRKEEEEEEKKKKKKKKKKKRTKKKEEEKRK 177
EE KK E + K + KK E+ K K +KE EE++K ++ KK +++ K EE +K
Sbjct: 1610 EEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKK 1669
Query: 178 NEKAVR 183
E+ +
Sbjct: 1670 AEEDKK 1675
Score = 60.5 bits (146), Expect = 9e-10
Identities = 50/185 (27%), Positives = 97/185 (52%), Gaps = 5/185 (2%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKK 61
K K +E KK + + K E K + K+ +E K+ ++ +K + K K++ + + +
Sbjct: 1496 KKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAE 1555
Query: 62 KEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKE 121
+ K + +K E+ KK + + +++K E+ + E K + K+ +++K
Sbjct: 1556 ELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKA 1615
Query: 122 EEEKKK-----EAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKR 176
EE K K +AEE+KKK + K+K + +K EE ++ +++ K K + KK EE+K+
Sbjct: 1616 EEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKK 1675
Query: 177 KNEKA 181
K E+A
Sbjct: 1676 KAEEA 1680
Score = 60.2 bits (145), Expect = 1e-09
Identities = 56/188 (29%), Positives = 98/188 (52%), Gaps = 5/188 (2%)
Query: 4 KKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKE 63
KK+ ++ KK KKK + K E ++ KKK K +++K +E KK + K+
Sbjct: 1476 KKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKK 1535
Query: 64 KNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEE 123
++ K +E+KK + ++ ++ +K + K + EE KK E++ + E+ K E
Sbjct: 1536 ADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIE 1595
Query: 124 EKKKEAEEKKKK-----RTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKN 178
E K EE+KK + ++ K K + K+ EEE+KK ++ KKK+ KKK EE +K
Sbjct: 1596 EVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKA 1655
Query: 179 EKAVRLTK 186
E+ ++
Sbjct: 1656 EEENKIKA 1663
Score = 53.6 bits (128), Expect = 1e-07
Identities = 44/187 (23%), Positives = 87/187 (46%), Gaps = 4/187 (2%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKK 61
+ +E +K + R+ + K + + + EE + KK + K +++K+ E+ K+ ++
Sbjct: 1188 RKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEE 1247
Query: 62 KEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKE 121
+ N+ + EE + R + K + + +E KK E++K K + K +K
Sbjct: 1248 ERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEK---KKA 1304
Query: 122 EEEKKKEAEEKKKKRTKKK-EKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEK 180
+E KKK E KK KKK E+ K K+ +++ E+ KK + K + +E E+
Sbjct: 1305 DEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEE 1364
Query: 181 AVRLTKL 187
+
Sbjct: 1365 KAEAAEK 1371
Score = 47.1 bits (111), Expect = 2e-05
Identities = 55/195 (28%), Positives = 95/195 (48%), Gaps = 18/195 (9%)
Query: 5 KEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEK 64
+E +K + +R + K ++ + EE + KK + + + RK EE +K ++
Sbjct: 1143 EEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDARKA 1202
Query: 65 NKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEE-- 122
+ +EE+K ++ R+ + +K + + EE KK+AEE KK +E+N + RK E
Sbjct: 1203 EAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKA--EEERNNEEIRKFEEA 1260
Query: 123 --------------EEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRT 168
EE +K E KK + KK ++ K K++ +E KKK ++ KK
Sbjct: 1261 RMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEA 1320
Query: 169 KKKEEEKRKNEKAVR 183
KKK EE +K A +
Sbjct: 1321 KKKAEEAKKKADAAK 1335
Score = 45.9 bits (108), Expect = 3e-05
Identities = 46/180 (25%), Positives = 92/180 (51%), Gaps = 2/180 (1%)
Query: 4 KKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKE 63
K E+ +K ++ R + K +RK E+ K + ++ K ++ ++ E+ ++ ++
Sbjct: 1135 KAEDARKAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVRKAEELR 1194
Query: 64 KNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEE 123
K ++ + E +K ++ R ++ + ++K E K+AEE KK + +K + + EE
Sbjct: 1195 KAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEI 1254
Query: 124 EKKKEAEEKKKKRTKKKEKNKNKSRKEE--EEEEKKKKKKKKKKKRTKKKEEEKRKNEKA 181
K +EA R + K + + +E + EEKKK + KK + KK +E K+K E+A
Sbjct: 1255 RKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEA 1314
Score = 44.4 bits (104), Expect = 1e-04
Identities = 44/164 (26%), Positives = 81/164 (49%), Gaps = 6/164 (3%)
Query: 23 KNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNK----NRKEEKKKKK 78
K +R +E E+ K E+ KK + +E K + KKK ++ K + E+ +K +
Sbjct: 1084 KEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAE 1143
Query: 79 KRRTKKKEKNKNKSRKEEKKKEAEEEKK--KTKNKEKNKNKSRKEEEEKKKEAEEKKKKR 136
+ R + K +RK E ++AEE +K K E + + E+ ++AE+ +K
Sbjct: 1144 EARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDARKAE 1203
Query: 137 TKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEK 180
+K + + K+ + + E+ KK + KK + KK EE +K E+
Sbjct: 1204 AARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEE 1247
Score = 44.0 bits (103), Expect = 1e-04
Identities = 34/179 (18%), Positives = 88/179 (49%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKK 61
K ++ +K ++ R+ + K + + E+ + +K ++ + ++RK E+ KK
Sbjct: 1122 KKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAA 1181
Query: 62 KEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKE 121
++ + + +E +K + R+ + K + + + EE +K + +K + K + K +E
Sbjct: 1182 RKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEE 1241
Query: 122 EEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEK 180
++ ++E ++ ++ ++ R+ + E+ +K + KK KKK +E +K E+
Sbjct: 1242 AKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEE 1300
Score = 42.8 bits (100), Expect = 3e-04
Identities = 49/181 (27%), Positives = 84/181 (46%), Gaps = 9/181 (4%)
Query: 4 KKEEKKKKKKRRTKKKEKNKNKS----RKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRT 59
KK E+ +KK KKE + K +K+E EEK+ ++ K + +NK + EE KK+
Sbjct: 1681 KKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAE 1740
Query: 60 KKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSR 119
+ K+K + + EE+KKK K++EK + RKE++ EE ++ + + +K
Sbjct: 1741 EDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKI 1800
Query: 120 KEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNE 179
K+ + E K+ + KE E+ K+ K + + EK K
Sbjct: 1801 KDIFDNFANIIEGGKEGNLVINDS-----KEMEDSAIKEVADSKNMQLEEADAFEKHKFN 1855
Query: 180 K 180
K
Sbjct: 1856 K 1856
Score = 42.8 bits (100), Expect = 4e-04
Identities = 47/178 (26%), Positives = 91/178 (51%), Gaps = 2/178 (1%)
Query: 2 KNKKEEKKKKKK-RRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTK 60
K + EE KK ++ ++ + +EK K + K+ EEE + K +E K+ + +K EE KK +
Sbjct: 1695 KKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEE 1754
Query: 61 KKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKK-EAEEEKKKTKNKEKNKNKSR 119
+K+K + ++EEKK ++ R+ K+ + ++EK++ E +++ K + N +
Sbjct: 1755 EKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIFDNFANIIEGG 1814
Query: 120 KEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRK 177
KE +++E + K+ +KN +E + EK K K + KE + K
Sbjct: 1815 KEGNLVINDSKEMEDSAIKEVADSKNMQLEEADAFEKHKFNKNNENGEDGNKEADFNK 1872
Score = 39.4 bits (91), Expect = 0.004
Identities = 34/170 (20%), Positives = 87/170 (51%), Gaps = 4/170 (2%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKK 61
N+ +E ++ + ++ +K + +E + + KKK ++ + ++RK E+ +K +
Sbjct: 1086 DNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEA 1145
Query: 62 KEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAE----EEKKKTKNKEKNKNK 117
++ K + +K + R+ ++ K ++ + E +K E EE +K ++ K +
Sbjct: 1146 RKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAA 1205
Query: 118 SRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKR 167
+ EEE K +EA + + + + K +++K+ EE +K ++++ ++ R
Sbjct: 1206 RKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIR 1255
Score = 34.3 bits (78), Expect = 0.14
Identities = 37/165 (22%), Positives = 75/165 (45%), Gaps = 2/165 (1%)
Query: 21 KNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKR 80
K K+ ++ + K + K +++ K K KE N+ EE K +
Sbjct: 1043 KEKDIIDEDIDGNHEGKAEAKAHVGQDEGLKPSYKDFDFDAKEDNRADEATEEAFGKAEE 1102
Query: 81 RTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKK 140
K + ++RK E+ K+ E+ +K + K ++ + EE K ++A+ + R +
Sbjct: 1103 AKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAED 1162
Query: 141 EKNKNKSRKEEEEE--EKKKKKKKKKKKRTKKKEEEKRKNEKAVR 183
+ ++RK E+ + E +K ++ +K +K E+ RK E A +
Sbjct: 1163 ARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARK 1207
Score = 33.6 bits (76), Expect = 0.21
Identities = 37/176 (21%), Positives = 81/176 (46%), Gaps = 6/176 (3%)
Query: 11 KKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNR 70
K + + + K ++ + + ++ + K EE KK K + K
Sbjct: 1059 KAEAKAHVGQDEGLKPSYKDFDFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAE 1118
Query: 71 KEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNK---SRKEEEEKKK 127
+ +KK + R+ ++ K ++ + EE +K + ++ + K ++ K +RK E+ KK
Sbjct: 1119 EAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKA 1178
Query: 128 EAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKAVR 183
EA K ++ K +E K + ++ E K ++++K ++ R K E+ +K E +
Sbjct: 1179 EAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEAR---KAEDAKKAEAVKK 1231
Score = 31.6 bits (71), Expect = 0.88
Identities = 39/183 (21%), Positives = 75/183 (40%), Gaps = 3/183 (1%)
Query: 4 KKEEKKKKKKRRTKKKEKNKNKSRKEEE---EEKRTKKKEKNKKNKNKSRKEEEKKKRTK 60
K EE+KKK K++EK + RKE+E EE+ ++ EK + +K K+
Sbjct: 1751 KDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIFDNFANI 1810
Query: 61 KKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRK 120
+ + + K+ + K+ +KN +E E + K +N E ++
Sbjct: 1811 IEGGKEGNLVINDSKEMEDSAIKEVADSKNMQLEEADAFEKHKFNKNNENGEDGNKEADF 1870
Query: 121 EEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEK 180
+E+ KE +E++ + + EK + E K K+E +++ +
Sbjct: 1871 NKEKDLKEDDEEEIEEADEIEKIDKDDIEREIPNNNMAGKNNDIIDDKLDKDEYIKRDAE 1930
Query: 181 AVR 183
R
Sbjct: 1931 ETR 1933
Score = 30.9 bits (69), Expect = 1.4
Identities = 40/177 (22%), Positives = 77/177 (43%), Gaps = 1/177 (0%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKK 61
K K EE KK+ + KK E+ K K +E+++ KK+E+ K + + KE ++ +
Sbjct: 1729 KIKAEEAKKEAEEDKKKAEEAK-KDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDE 1787
Query: 62 KEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKE 121
+++ + ++ K E K + KE E+ K KN +
Sbjct: 1788 EDEKRRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSKEMEDSAIKEVADSKNMQLEEAD 1847
Query: 122 EEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKN 178
EK K + + KE + NK + +E++E++ ++ + +K K E + N
Sbjct: 1848 AFEKHKFNKNNENGEDGNKEADFNKEKDLKEDDEEEIEEADEIEKIDKDDIEREIPN 1904
Score = 30.1 bits (67), Expect = 2.7
Identities = 37/160 (23%), Positives = 67/160 (41%), Gaps = 2/160 (1%)
Query: 22 NKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRR 81
N+N + ++ EE + K K+ ++ + K + K + K K
Sbjct: 1021 NQNFNIEKIEELTEYGNNDDVLKEKDIIDEDIDGNHEGKAEAKAHVGQDEGLKPSYKDFD 1080
Query: 82 TKKKEKNKNKSRKEEKKKEAEEEKKKTKNK--EKNKNKSRKEEEEKKKEAEEKKKKRTKK 139
KE N+ EE +AEE KK K E K + K++ E ++AEE +K +
Sbjct: 1081 FDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDAR 1140
Query: 140 KEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNE 179
K + K+ + E +K + +K + +K E+ K+
Sbjct: 1141 KAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEA 1180
Score = 28.2 bits (62), Expect = 9.6
Identities = 35/152 (23%), Positives = 66/152 (43%), Gaps = 4/152 (2%)
Query: 37 KKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEE 96
+K E+ + N +EK + + N + + + K K+ + KE+
Sbjct: 1027 EKIEELTEYGNNDDVLKEKDIIDEDIDGNHEGKAEAKAHVGQDEGLKPSYKDFDFDAKED 1086
Query: 97 KKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEK 156
+ + E+ K +E K ++ K EE +K E +KK + +K E+ + + EE +
Sbjct: 1087 NRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEAR 1146
Query: 157 KKKKKKK----KKKRTKKKEEEKRKNEKAVRL 184
K + K+ +K +K EE RK E A +
Sbjct: 1147 KAEDAKRVEIARKAEDARKAEEARKAEDAKKA 1178
>gnl|CDD|238827 cd01650, RT_nLTR_like, RT_nLTR: Non-LTR (long terminal repeat)
retrotransposon and non-LTR retrovirus reverse
transcriptase (RT). This subfamily contains both non-LTR
retrotransposons and non-LTR retrovirus RTs. RTs
catalyze the conversion of single-stranded RNA into
double-stranded DNA for integration into host
chromosomes. RT is a multifunctional enzyme with
RNA-directed DNA polymerase, DNA directed DNA polymerase
and ribonuclease hybrid (RNase H) activities.
Length = 220
Score = 74.6 bits (184), Expect = 2e-15
Identities = 33/120 (27%), Positives = 52/120 (43%), Gaps = 15/120 (12%)
Query: 226 GCIQGGHMSGLLFSLFINDIAEI----------FPGFNFWLFADDLKVALRVGGQREVDS 275
G QG +S LLF+L ++D+ + PG +ADD+ + +
Sbjct: 106 GVRQGDPLSPLLFNLALDDLLRLLNKEEEIKLGGPGITHLAYADDIVLFSEGKSR----K 161
Query: 276 MQSMLSRLYHWCSINKMELNIGKCMVMTYHRNKSPILASYDINGQALARCEQVRDLGVTF 335
+Q +L RL W + +++N K VM NK L +NG + E + LGVT
Sbjct: 162 LQELLQRLQEWSKESGLKINPSKSKVMLI-GNKKKRLKDITLNGTPIEAVETFKYLGVTI 220
>gnl|CDD|235401 PRK05306, infB, translation initiation factor IF-2; Validated.
Length = 746
Score = 72.6 bits (179), Expect = 1e-13
Identities = 36/176 (20%), Positives = 74/176 (42%), Gaps = 11/176 (6%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKK 61
K K+ ++ + + K+ S EEEE R ++ K E +++ +
Sbjct: 11 KELGVSSKELLEKLKELGIEVKSHSSTVEEEEARKEEA-----------KREAEEEAKAE 59
Query: 62 KEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKE 121
E+ +EE K + +E + + E + AE+E + + K++K
Sbjct: 60 AEEAAAAEAEEEAKAEAAAAAPAEEAAEAAAAAEAAARPAEDEAARPAEAAARRPKAKKA 119
Query: 122 EEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRK 177
++KK +KKK + K K + + +++++KKKK+ K E+ R+
Sbjct: 120 AKKKKGPKPKKKKPKRKAARGGKRGKGGKGRRRRRGRRRRRKKKKKQKPTEKIPRE 175
Score = 71.8 bits (177), Expect = 2e-13
Identities = 33/175 (18%), Positives = 75/175 (42%), Gaps = 2/175 (1%)
Query: 12 KKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRK 71
K R + K S KE E + K+ K+ + + +EEE +K K+E + +
Sbjct: 2 SKVRVYELAKELGVSSKELLE--KLKELGIEVKSHSSTVEEEEARKEEAKREAEEEAKAE 59
Query: 72 EEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEE 131
E+ + + K + + EE + A + + E + + + K +
Sbjct: 60 AEEAAAAEAEEEAKAEAAAAAPAEEAAEAAAAAEAAARPAEDEAARPAEAAARRPKAKKA 119
Query: 132 KKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKAVRLTK 186
KKK+ K +K K K + + K K +++++ +++ ++K+K + ++ +
Sbjct: 120 AKKKKGPKPKKKKPKRKAARGGKRGKGGKGRRRRRGRRRRRKKKKKQKPTEKIPR 174
Score = 60.2 bits (147), Expect = 1e-09
Identities = 24/153 (15%), Positives = 56/153 (36%), Gaps = 1/153 (0%)
Query: 1 CKNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTK 60
K E K +++ + + R+ EEE K + +E + K E
Sbjct: 24 LKELGIEVKSHSSTVEEEEARKEEAKREAEEEAKA-EAEEAAAAEAEEEAKAEAAAAAPA 82
Query: 61 KKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRK 120
++ + + + + E + + ++ K+ + K K K ++ + K
Sbjct: 83 EEAAEAAAAAEAAARPAEDEAARPAEAAARRPKAKKAAKKKKGPKPKKKKPKRKAARGGK 142
Query: 121 EEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEE 153
+ K + ++R +KK+K + + K E
Sbjct: 143 RGKGGKGRRRRRGRRRRRKKKKKQKPTEKIPRE 175
>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein. TolA couples the inner
membrane complex of itself with TolQ and TolR to the
outer membrane complex of TolB and OprL (also called
Pal). Most of the length of the protein consists of
low-complexity sequence that may differ in both length
and composition from one species to another,
complicating efforts to discriminate TolA (the most
divergent gene in the tol-pal system) from paralogs such
as TonB. Selection of members of the seed alignment and
criteria for setting scoring cutoffs are based largely
conserved operon struction. //The Tol-Pal complex is
required for maintaining outer membrane integrity. Also
involved in transport (uptake) of colicins and
filamentous DNA, and implicated in pathogenesis.
Transport is energized by the proton motive force. TolA
is an inner membrane protein that interacts with
periplasmic TolB and with outer membrane porins ompC,
phoE and lamB [Transport and binding proteins, Other,
Cellular processes, Pathogenesis].
Length = 346
Score = 69.1 bits (169), Expect = 5e-13
Identities = 51/193 (26%), Positives = 85/193 (44%), Gaps = 6/193 (3%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKK 61
+ +K+ KK++ R KK E+ ++ K+ E+ +K+ + + K+ K+ E+ + +
Sbjct: 56 QQQKKPAAKKEQERQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAE 115
Query: 62 KEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKE 121
+++ K +E K K+ K E K KEE KK+AEEE K K + K +
Sbjct: 116 EKQ---KQAEEAKAKQAAEAKAKAEAEAEKKAKEEAKKQAEEEAKA---KAAAEAKKKAA 169
Query: 122 EEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKA 181
E +KK EAE K K K K K + K E + K + K + KA
Sbjct: 170 EAKKKAEAEAKAKAEAKAKAKAEEAKAKAEAAKAKAAAEAAAKAEAEAAAAAAAEAERKA 229
Query: 182 VRLTKLSAFGISG 194
FG++
Sbjct: 230 DEAELGDIFGLAS 242
Score = 64.9 bits (158), Expect = 1e-11
Identities = 39/162 (24%), Positives = 82/162 (50%), Gaps = 4/162 (2%)
Query: 24 NKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTK 83
+ ++ + ++K+ K + + +K+ E++ +K++ + R++E +++
Sbjct: 44 DPGAVAQQANRIQQQKKPAAKKEQERQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKA 103
Query: 84 KKEKNKNKSRKEEKKKEAEEEKKKT----KNKEKNKNKSRKEEEEKKKEAEEKKKKRTKK 139
K+ + + EEK+K+AEE K K K K + + + + +EE KK+ EE K K +
Sbjct: 104 AKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKAKEEAKKQAEEEAKAKAAAE 163
Query: 140 KEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKA 181
+K +++K+ E E K K + K K K + K + + KA
Sbjct: 164 AKKKAAEAKKKAEAEAKAKAEAKAKAKAEEAKAKAEAAKAKA 205
Score = 43.3 bits (102), Expect = 1e-04
Identities = 24/103 (23%), Positives = 57/103 (55%), Gaps = 2/103 (1%)
Query: 83 KKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKK--KRTKKK 140
++ N+ + +K+ K+ +E +KK + + + K R E+ ++KE E++ K K+
Sbjct: 48 VAQQANRIQQQKKPAAKKEQERQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQA 107
Query: 141 EKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKAVR 183
E+ ++ +++++ E+ K K+ + K + E EK+ E+A +
Sbjct: 108 EQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKAKEEAKK 150
Score = 38.3 bits (89), Expect = 0.006
Identities = 33/145 (22%), Positives = 57/145 (39%), Gaps = 4/145 (2%)
Query: 4 KKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKR----T 59
K+ E+K+K+ K K+ + K++ E E EK+ K++ K + + K + K+
Sbjct: 112 KQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKAKEEAKKQAEEEAKAKAAAEAKKKAAEA 171
Query: 60 KKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSR 119
KKK + + K + E K K K K K + E +AE E E +
Sbjct: 172 KKKAEAEAKAKAEAKAKAKAEEAKAKAEAAKAKAAAEAAAKAEAEAAAAAAAEAERKADE 231
Query: 120 KEEEEKKKEAEEKKKKRTKKKEKNK 144
E + A ++ N
Sbjct: 232 AELGDIFGLASGSNAEKQGGARGNA 256
Score = 36.7 bits (85), Expect = 0.019
Identities = 25/131 (19%), Positives = 53/131 (40%), Gaps = 1/131 (0%)
Query: 4 KKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKE 63
K E + +KK + + K++ + +++ + E + K E KK + +++ + E K + K E
Sbjct: 134 AKAEAEAEKKAKEEAKKQAEEEAKAKAAAEAKKKAAEAKKKAEAEAKAKAEAKAK-AKAE 192
Query: 64 KNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEE 123
+ K K + K + K + + + E ++K E E N ++
Sbjct: 193 EAKAKAEAAKAKAAAEAAAKAEAEAAAAAAAEAERKADEAELGDIFGLASGSNAEKQGGA 252
Query: 124 EKKKEAEEKKK 134
E K
Sbjct: 253 RGNAAGSEVDK 263
Score = 36.0 bits (83), Expect = 0.027
Identities = 28/140 (20%), Positives = 55/140 (39%), Gaps = 3/140 (2%)
Query: 5 KEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEK 64
K+ + K K + ++K K +++K+ EEE + K + KK K+ + ++K + K +
Sbjct: 127 KQAAEAKAKAEAEAEKKAKEEAKKQAEEEAKAKAAAEAKK---KAAEAKKKAEAEAKAKA 183
Query: 65 NKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEE 124
K E+ K K K K + ++ E + A + + K E
Sbjct: 184 EAKAKAKAEEAKAKAEAAKAKAAAEAAAKAEAEAAAAAAAEAERKADEAELGDIFGLASG 243
Query: 125 KKKEAEEKKKKRTKKKEKNK 144
E + + E +K
Sbjct: 244 SNAEKQGGARGNAAGSEVDK 263
Score = 34.0 bits (78), Expect = 0.12
Identities = 26/118 (22%), Positives = 42/118 (35%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKK 61
K K E + +KK + KK+ + K E K+ + K K K E K K +
Sbjct: 133 KAKAEAEAEKKAKEEAKKQAEEEAKAKAAAEAKKKAAEAKKKAEAEAKAKAEAKAKAKAE 192
Query: 62 KEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSR 119
+ K K + K + + + + + + E K EAE N K
Sbjct: 193 EAKAKAEAAKAKAAAEAAAKAEAEAAAAAAAEAERKADEAELGDIFGLASGSNAEKQG 250
>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3. This
protein, which interacts with both microtubules and
TRAF3 (tumour necrosis factor receptor-associated factor
3), is conserved from worms to humans. The N-terminal
region is the microtubule binding domain and is
well-conserved; the C-terminal 100 residues, also
well-conserved, constitute the coiled-coil region which
binds to TRAF3. The central region of the protein is
rich in lysine and glutamic acid and carries KKE motifs
which may also be necessary for tubulin-binding, but
this region is the least well-conserved.
Length = 506
Score = 64.9 bits (158), Expect = 2e-11
Identities = 45/180 (25%), Positives = 100/180 (55%), Gaps = 3/180 (1%)
Query: 4 KKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKE 63
K+ EK K K K + K+ +EEEK ++ ++ KK K + KEE K ++ K++
Sbjct: 78 KRVEKGGSKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEA 137
Query: 64 KNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEE 123
K K +++EK+K+KK ++ +++ + +K E+ + KK K K NK K EEE
Sbjct: 138 KEKRPPKEKEKEKEKK---VEEPRDREEEKKRERVRAKSRPKKPPKKKPPNKKKEPPEEE 194
Query: 124 EKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKAVR 183
++++ A E K + ++ + N+ + ++E++ ++++ ++ +++ E R++ +++
Sbjct: 195 KQRQAAREAVKGKPEEPDVNEEREKEEDDGKDRETTTSPMEEDESRQSSEISRRSSSSLK 254
Score = 64.1 bits (156), Expect = 5e-11
Identities = 44/180 (24%), Positives = 91/180 (50%), Gaps = 1/180 (0%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKN-KNKSRKEEEKKKRTK 60
K KE K + K K+KE+ K + +K++E+ K K K K+ K K +E++K++ K
Sbjct: 93 KPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEK 152
Query: 61 KKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRK 120
K E+ +++ ++++++ + + KK K K+++ E E++++ + K K +
Sbjct: 153 KVEEPRDREEEKKRERVRAKSRPKKPPKKKPPNKKKEPPEEEKQRQAAREAVKGKPEEPD 212
Query: 121 EEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEK 180
EE++KE ++ K + T +++SR+ E + KK E R++ K
Sbjct: 213 VNEEREKEEDDGKDRETTTSPMEEDESRQSSEISRRSSSSLKKPDPSPSMASPETRESSK 272
Score = 59.9 bits (145), Expect = 1e-09
Identities = 39/151 (25%), Positives = 75/151 (49%), Gaps = 1/151 (0%)
Query: 34 KRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSR 93
KR +K +E K + K++EK K + KEEKKKKK++ ++ + K K
Sbjct: 78 KRVEKGGSKGPAAKTKPAKEPKNESGKEEEKEKEQV-KEEKKKKKEKPKEEPKDRKPKEE 136
Query: 94 KEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEE 153
+EK+ E+EK+K K E+ +++ +++ E+ + KK KK K + +EE++
Sbjct: 137 AKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKKKPPNKKKEPPEEEKQ 196
Query: 154 EEKKKKKKKKKKKRTKKKEEEKRKNEKAVRL 184
+ ++ K K + EE +++ +
Sbjct: 197 RQAAREAVKGKPEEPDVNEEREKEEDDGKDR 227
Score = 56.8 bits (137), Expect = 1e-08
Identities = 35/141 (24%), Positives = 75/141 (53%), Gaps = 1/141 (0%)
Query: 41 KNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKE 100
K ++K S + ++ ++ K +E K + + ++KEK + K K++KK++
Sbjct: 65 KCAESKLSSDEAVKRVEKGGSKGPAAKTKPAKEPKNESGK-EEEKEKEQVKEEKKKKKEK 123
Query: 101 AEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKK 160
+EE K K KE+ K K +E+EK+KE + ++ + ++++K + K ++ KKK
Sbjct: 124 PKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKKKP 183
Query: 161 KKKKKKRTKKKEEEKRKNEKA 181
KKK+ +++++ + E
Sbjct: 184 PNKKKEPPEEEKQRQAAREAV 204
Score = 56.4 bits (136), Expect = 1e-08
Identities = 45/169 (26%), Positives = 92/169 (54%), Gaps = 4/169 (2%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKK--EKNKKNKNKSRKEEEKKKRT 59
K K++ K++KKK++ K KE+ K++ KEE +EKR K+ ++ +K + R EE+KKR
Sbjct: 108 KEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRE 167
Query: 60 KKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSR 119
+ + K++ K ++K KK+ ++EK + +R+ K K E + + + KE++ K R
Sbjct: 168 RVRAKSRPKKPPKKKPPNKKKEPPEEEKQRQAAREAVKGKPEEPDVNEEREKEEDDGKDR 227
Query: 120 KEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRT 168
E E++ ++ ++ ++ + +K + + ++ KRT
Sbjct: 228 --ETTTSPMEEDESRQSSEISRRSSSSLKKPDPSPSMASPETRESSKRT 274
Score = 52.6 bits (126), Expect = 2e-07
Identities = 42/159 (26%), Positives = 76/159 (47%), Gaps = 5/159 (3%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNK-----KNKNKSRKEEEKK 56
K KK+EK K++ + K KE+ K K +E+E+++ KK E+ + K + + R + K
Sbjct: 117 KKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSRPK 176
Query: 57 KRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKN 116
K KKK NK K EE+K+++ R K K + EE++KE ++ K + +
Sbjct: 177 KPPKKKPPNKKKEPPEEEKQRQAAREAVKGKPEEPDVNEEREKEEDDGKDRETTTSPMEE 236
Query: 117 KSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEE 155
++ E + + KK ++R+ + E
Sbjct: 237 DESRQSSEISRRSSSSLKKPDPSPSMASPETRESSKRTE 275
Score = 41.0 bits (96), Expect = 0.001
Identities = 32/183 (17%), Positives = 76/183 (41%), Gaps = 5/183 (2%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKK 61
+ +K+ ++ + + KK+E+ + KSR ++ +K+ K+K + K R+ + + K
Sbjct: 149 EKEKKVEEPRDREEEKKRERVRAKSRPKKPPKKKPPNKKKEPPEEEKQRQAAREAVKGKP 208
Query: 62 KEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNK---- 117
+E + N+ R++E+ K R T +++SR+ + K + +
Sbjct: 209 EEPDVNEEREKEEDDGKDRETTTSPMEEDESRQSSEISRRSSSSLKKPDPSPSMASPETR 268
Query: 118 -SRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKR 176
S K E + + + R + +++E + + K E +K
Sbjct: 269 ESSKRTETRPRTSLRPPSARPASARPAPPRVKRKEIVTVLQDAQGVGKIVSNVILEGKKS 328
Query: 177 KNE 179
++E
Sbjct: 329 EDE 331
Score = 39.9 bits (93), Expect = 0.002
Identities = 25/96 (26%), Positives = 50/96 (52%), Gaps = 1/96 (1%)
Query: 94 KEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSR-KEEE 152
+ EA + +K +K +E + + EE+K+K K+EK K K + KEE
Sbjct: 69 SKLSSDEAVKRVEKGGSKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEP 128
Query: 153 EEEKKKKKKKKKKKRTKKKEEEKRKNEKAVRLTKLS 188
++ K K++ K+K+ +K++E+++K E+ +
Sbjct: 129 KDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEK 164
Score = 39.5 bits (92), Expect = 0.003
Identities = 25/98 (25%), Positives = 50/98 (51%)
Query: 89 KNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSR 148
++K +E K E+ K + K K E K++E E+++ K KKK+K K K
Sbjct: 68 ESKLSSDEAVKRVEKGGSKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEE 127
Query: 149 KEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKAVRLTK 186
++ + +++ K+K+ K++ K+KE++ + K
Sbjct: 128 PKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKK 165
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein
TolA; Provisional.
Length = 387
Score = 63.7 bits (155), Expect = 4e-11
Identities = 40/183 (21%), Positives = 83/183 (45%), Gaps = 5/183 (2%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRT-- 59
++ +KK++++ ++++ + R ++ E++R +E+ K+ + +++ K+K+
Sbjct: 77 AEEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEE 136
Query: 60 -KKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKS 118
K K + E + K+ KK K + E K+A E KK K + + K+
Sbjct: 137 AAAKAAAAAKAKAEAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAAEAKK-KAEAEAAAKA 195
Query: 119 RKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKN 178
E +KK EAE KKK + K+K +++ + + K +K K E+
Sbjct: 196 -AAEAKKKAEAEAKKKAAAEAKKKAAAEAKAAAAKAAAEAKAAAEKAAAAKAAEKAAAAK 254
Query: 179 EKA 181
A
Sbjct: 255 AAA 257
Score = 63.3 bits (154), Expect = 6e-11
Identities = 48/181 (26%), Positives = 90/181 (49%), Gaps = 6/181 (3%)
Query: 3 NKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKK-NKNKSRKEEEKKKRTKK 61
N++++++K KR ++++K K + + EE ++K+ ++E+ K+ K + +E+KK+ +
Sbjct: 65 NRQQQQQKSAKRAEEQRKK-KEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEA 123
Query: 62 KEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKE 121
++ K ++ E+ K K + R K+A E KK K + + +
Sbjct: 124 AKQAALKQKQAEEAAAKAAAAAKAKAEAEAKRAAAAAKKAAAEAKK---KAEAEAAKKAA 180
Query: 122 EEEKKK-EAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEK 180
E KKK EAE K + K+K + +++K+ E KKK + K K E K EK
Sbjct: 181 AEAKKKAEAEAAAKAAAEAKKKAEAEAKKKAAAEAKKKAAAEAKAAAAKAAAEAKAAAEK 240
Query: 181 A 181
A
Sbjct: 241 A 241
Score = 51.7 bits (124), Expect = 3e-07
Identities = 34/157 (21%), Positives = 64/157 (40%), Gaps = 5/157 (3%)
Query: 4 KKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKK---RTK 60
+ ++ +K++ ++K++ + +++ ++K+ ++ K++ E E K+ K
Sbjct: 102 RLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAKAEAEAKRAAAAAK 161
Query: 61 KKEKNKNKNRKEEKKKKKKRRTKKK--EKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKS 118
K K + E KK KKK + K+ E KKK E KKK + K K +
Sbjct: 162 KAAAEAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKKAAAEAKKKAAA 221
Query: 119 RKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEE 155
+ K AE K K K+ + E
Sbjct: 222 EAKAAAAKAAAEAKAAAEKAAAAKAAEKAAAAKAAAE 258
Score = 33.6 bits (77), Expect = 0.20
Identities = 26/113 (23%), Positives = 43/113 (38%), Gaps = 2/113 (1%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTK--KKEKNKKNKNKSRKEEEKKKRT 59
K K E + K+ KK K + E +K KK+ + K+ E +KK
Sbjct: 146 KAKAEAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEA 205
Query: 60 KKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKE 112
+ K+K + +K+ + K K + K + K K AE+ E
Sbjct: 206 EAKKKAAAEAKKKAAAEAKAAAAKAAAEAKAAAEKAAAAKAAEKAAAAKAAAE 258
Score = 31.3 bits (71), Expect = 0.94
Identities = 23/82 (28%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 111 KEKNKNKSRKEEEEKKKE---AEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKR 167
+++ K+ R EE+ KKKE AEE ++K+ ++E+ K ++ +E+KK+ ++ K+
Sbjct: 68 QQQQKSAKRAEEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQA 127
Query: 168 TKKKEEEKRKNEKAVRLTKLSA 189
K+++ + KA K A
Sbjct: 128 ALKQKQAEEAAAKAAAAAKAKA 149
>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional.
Length = 509
Score = 61.2 bits (149), Expect = 4e-10
Identities = 30/179 (16%), Positives = 62/179 (34%), Gaps = 4/179 (2%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKK 61
+ EE+ KKK ++ K K+K KEE +E KK+ ++ K T
Sbjct: 9 ELAAEEEAKKKLKKLAAKSKSKGFITKEEIKEALESKKKTPEQIDQVLIFLSGMVKDTDD 68
Query: 62 KEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKE 121
++ +K + K +K KK E + K + K+
Sbjct: 69 ATESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVKDIDVLN 128
Query: 122 EEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEK 180
+ + + ++ + + + +E+++E + KK+ +E K
Sbjct: 129 QADDDDDDDDD----DDLDDDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAKELEKLSD 183
Score = 57.7 bits (140), Expect = 5e-09
Identities = 30/187 (16%), Positives = 73/187 (39%), Gaps = 8/187 (4%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEE-----KK 56
K + +++ KK+ K K+K+K +EE K + +K +
Sbjct: 7 KAELAAEEEAKKKLKKLAAKSKSKGFITKEEIKEALESKKKTPEQIDQVLIFLSGMVKDT 66
Query: 57 KRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKK---TKNKEK 113
+ + K K + K K KKK K++ S K+ +KK A ++ K+ +
Sbjct: 67 DDATESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVKDIDV 126
Query: 114 NKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEE 173
++++ + ++ E + ++ ++E ++KK+ K+ ++ ++
Sbjct: 127 LNQADDDDDDDDDDDLDDDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAKELEKLSDDDD 186
Query: 174 EKRKNEK 180
+
Sbjct: 187 FVWDEDD 193
Score = 53.8 bits (130), Expect = 9e-08
Identities = 28/158 (17%), Positives = 59/158 (37%), Gaps = 2/158 (1%)
Query: 18 KKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKK 77
K + EEE +K+ KK K+K KEE K+ KK+ + +
Sbjct: 2 TTASTKAELAAEEEAKKKLKKLAAKSKSKGFITKEEIKEALESKKKTPEQI--DQVLIFL 59
Query: 78 KKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRT 137
+ ++ K++ K A+ K K+K K++ ++ +KK A +K
Sbjct: 60 SGMVKDTDDATESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLN 119
Query: 138 KKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEK 175
K+ + ++++++ E++
Sbjct: 120 YVKDIDVLNQADDDDDDDDDDDLDDDDIDDDDDDEDDD 157
Score = 51.5 bits (124), Expect = 4e-07
Identities = 19/141 (13%), Positives = 43/141 (30%), Gaps = 3/141 (2%)
Query: 42 NKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEA 101
K+ E++ + K K+ K K++ + + +K + + +
Sbjct: 1 MTTASTKAELAAEEEAKKKLKKLAAKSKSKGFITKEEIKEALESKKKTPEQIDQVLIFLS 60
Query: 102 EEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKK 161
K E + K + + K K KK + + S+K E++ K
Sbjct: 61 GMVKDTDDATESDIPKKKTKTAAKAAA---AKAPAKKKLKDELDSSKKAEKKNALDKDDD 117
Query: 162 KKKKKRTKKKEEEKRKNEKAV 182
K + ++
Sbjct: 118 LNYVKDIDVLNQADDDDDDDD 138
Score = 51.5 bits (124), Expect = 5e-07
Identities = 26/127 (20%), Positives = 47/127 (37%), Gaps = 1/127 (0%)
Query: 61 KKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRK 120
K + EE+ KKK ++ K K+K KEE K+ E +KK + ++
Sbjct: 2 TTASTKAELAAEEEAKKKLKKLAAKSKSKGFITKEEIKEALESKKKTPEQIDQVLIFLSG 61
Query: 121 EEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEK 180
++ E K+ K K + K +++ K + KK K ++
Sbjct: 62 MVKDTDDATESDIPKKKTKTAA-KAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNY 120
Query: 181 AVRLTKL 187
+ L
Sbjct: 121 VKDIDVL 127
Score = 51.5 bits (124), Expect = 5e-07
Identities = 24/174 (13%), Positives = 67/174 (38%), Gaps = 9/174 (5%)
Query: 5 KEEKKKKKKRRTKKKEKNKN---------KSRKEEEEEKRTKKKEKNKKNKNKSRKEEEK 55
KEE K+ + + K E+ K + E KKK K ++ +K
Sbjct: 35 KEEIKEALESKKKTPEQIDQVLIFLSGMVKDTDDATESDIPKKKTKTAAKAAAAKAPAKK 94
Query: 56 KKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNK 115
K + + K + + K K + ++ + + + + + ++
Sbjct: 95 KLKDELDSSKKAEKKNALDKDDDLNYVKDIDVLNQADDDDDDDDDDDLDDDDIDDDDDDE 154
Query: 116 NKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTK 169
+ ++++ + +E+KK+ + ++ + + +E++ + ++ +K K T
Sbjct: 155 DDDEDDDDDDVDDEDEEKKEAKELEKLSDDDDFVWDEDDSEALRQARKDAKLTA 208
Score = 41.9 bits (99), Expect = 5e-04
Identities = 24/102 (23%), Positives = 37/102 (36%), Gaps = 2/102 (1%)
Query: 88 NKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKS 147
S K E E E +KK K K+K+K +EE K+ E KKK + +
Sbjct: 1 MTTASTKAELAAEEEAKKKLKKLAAKSKSKGFITKEEIKEALESKKKTPEQIDQVLIFL- 59
Query: 148 RKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKAVRLTKLSA 189
++ + KK+TK + A + K
Sbjct: 60 -SGMVKDTDDATESDIPKKKTKTAAKAAAAKAPAKKKLKDEL 100
>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell
envelope biogenesis, outer membrane].
Length = 387
Score = 59.6 bits (144), Expect = 9e-10
Identities = 52/182 (28%), Positives = 90/182 (49%), Gaps = 10/182 (5%)
Query: 4 KKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKE 63
K E+++KKK+ + ++ K K + E+E + +KE+ K + + + EE +K+ +++
Sbjct: 76 KGEQQRKKKEEQVAEELKPK---QAAEQERLKQLEKERLKAQEQQKQAEEAEKQAQLEQK 132
Query: 64 KNKNKNRK---EEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRK 120
+ + + RK E+KKK + + K + E KK+AEE K E+ K K+
Sbjct: 133 QQEEQARKAAAEQKKKAEAAKAKAAAEAAKLKAAAEAKKKAEEAAKA---AEEAKAKAEA 189
Query: 121 EEEEKKKEAEEKKKKRTKKKEKN-KNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNE 179
+KK EAE K K E K K+ K+ E ++K +KKK K K ++
Sbjct: 190 AAAKKKAEAEAKAAAEKAKAEAEAKAKAEKKAEAAAEEKAAAEKKKAAAKAKADKAAAAA 249
Query: 180 KA 181
KA
Sbjct: 250 KA 251
Score = 56.1 bits (135), Expect = 1e-08
Identities = 41/184 (22%), Positives = 87/184 (47%), Gaps = 8/184 (4%)
Query: 6 EEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKN 65
++ + + +++ K+ + + +KEE+ + K K+ ++ + K ++E K + ++K+
Sbjct: 62 QQYGRIQSQQSSAKKGEQQRKKKEEQVAEELKPKQAAEQERLKQLEKERLKAQEQQKQAE 121
Query: 66 KNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKN----KSRKE 121
+ + + + ++K+++ + +K + K + K K A E K E K E
Sbjct: 122 EAEKQAQLEQKQQEEQARKAAAEQKKKAEAAKAKAAAEAAKLKAAAEAKKKAEEAAKAAE 181
Query: 122 EEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEE----EEKKKKKKKKKKKRTKKKEEEKRK 177
E + K EA KKK + + K++ E E E+K + ++K KKK K K
Sbjct: 182 EAKAKAEAAAAKKKAEAEAKAAAEKAKAEAEAKAKAEKKAEAAAEEKAAAEKKKAAAKAK 241
Query: 178 NEKA 181
+KA
Sbjct: 242 ADKA 245
Score = 52.3 bits (125), Expect = 2e-07
Identities = 45/181 (24%), Positives = 80/181 (44%), Gaps = 12/181 (6%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKK 61
K K+ ++++ K+ K++ K + + ++ EE EK + + + K+ + ++RK ++K KK
Sbjct: 93 KPKQAAEQERLKQLEKERLKAQEQQKQAEEAEK--QAQLEQKQQEEQARKAAAEQK--KK 148
Query: 62 KEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKE 121
E K K E K K KKK + K+ +E K K KK E + +
Sbjct: 149 AEAAKAKAAAEAAKLKAAAEAKKKAEEAAKAAEEAKAKAEAAAAKKKAEAEAKAAAEKAK 208
Query: 122 EEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKA 181
E + K EKK + ++ K E++K K K K K E++ A
Sbjct: 209 AEAEAKAKAEKKAEAAAEE--------KAAAEKKKAAAKAKADKAAAAAKAAERKAAAAA 260
Query: 182 V 182
+
Sbjct: 261 L 261
Score = 48.8 bits (116), Expect = 2e-06
Identities = 30/139 (21%), Positives = 67/139 (48%), Gaps = 6/139 (4%)
Query: 50 RKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTK 109
+ E+++KK+ ++ + + E+++ K+ ++ + + + + EE +K+A+ E+K+ +
Sbjct: 76 KGEQQRKKKEEQVAEELKPKQAAEQERLKQLEKERLKAQEQQKQAEEAEKQAQLEQKQQE 135
Query: 110 NKEKNK--NKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKK----KKKKK 163
+ + + +K E K K A E K + + K K + + EE K K KKK
Sbjct: 136 EQARKAAAEQKKKAEAAKAKAAAEAAKLKAAAEAKKKAEEAAKAAEEAKAKAEAAAAKKK 195
Query: 164 KKKRTKKKEEEKRKNEKAV 182
+ K E+ + +A
Sbjct: 196 AEAEAKAAAEKAKAEAEAK 214
Score = 42.6 bits (100), Expect = 2e-04
Identities = 35/124 (28%), Positives = 67/124 (54%), Gaps = 4/124 (3%)
Query: 70 RKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEA 129
+K E+++KKK +E ++ ++E+ K+ E+E+ K + ++K ++ K+ + ++K+
Sbjct: 75 KKGEQQRKKKEEQVAEELKPKQAAEQERLKQLEKERLKAQEQQKQAEEAEKQAQLEQKQQ 134
Query: 130 EEKKKK----RTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKAVRLT 185
EE+ +K + KK E K K+ E + + + KKK ++ K EE K K E A
Sbjct: 135 EEQARKAAAEQKKKAEAAKAKAAAEAAKLKAAAEAKKKAEEAAKAAEEAKAKAEAAAAKK 194
Query: 186 KLSA 189
K A
Sbjct: 195 KAEA 198
Score = 39.5 bits (92), Expect = 0.002
Identities = 30/117 (25%), Positives = 62/117 (52%), Gaps = 10/117 (8%)
Query: 71 KEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAE 130
+ ++ KK ++K+K + + + + K+ AE+E+ K KE R + +E++K+AE
Sbjct: 68 QSQQSSAKKGEQQRKKKEEQVAEELKPKQAAEQERLKQLEKE------RLKAQEQQKQAE 121
Query: 131 EKKKKRTKKKEKNKNKSRKEEEE----EEKKKKKKKKKKKRTKKKEEEKRKNEKAVR 183
E +K+ ++++ + ++RK E E K K + + K E K+K E+A +
Sbjct: 122 EAEKQAQLEQKQQEEQARKAAAEQKKKAEAAKAKAAAEAAKLKAAAEAKKKAEEAAK 178
Score = 33.0 bits (75), Expect = 0.28
Identities = 22/100 (22%), Positives = 56/100 (56%), Gaps = 3/100 (3%)
Query: 93 RKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEE 152
++ + ++++ K +++ K + + EE K K+A E+++ + +KE+ K + ++++
Sbjct: 61 VQQYGRIQSQQSSAKKGEQQRKKKEEQVAEELKPKQAAEQERLKQLEKERLKAQEQQKQA 120
Query: 153 EEEKKKK---KKKKKKKRTKKKEEEKRKNEKAVRLTKLSA 189
EE +K+ +K+++++ K E+K+K E A A
Sbjct: 121 EEAEKQAQLEQKQQEEQARKAAAEQKKKAEAAKAKAAAEA 160
Score = 32.6 bits (74), Expect = 0.31
Identities = 21/96 (21%), Positives = 57/96 (59%)
Query: 94 KEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEE 153
++ K+ E+++KK + + + K ++ E+++ + EK++ + ++++K ++ K+ +
Sbjct: 70 QQSSAKKGEQQRKKKEEQVAEELKPKQAAEQERLKQLEKERLKAQEQQKQAEEAEKQAQL 129
Query: 154 EEKKKKKKKKKKKRTKKKEEEKRKNEKAVRLTKLSA 189
E+K+++++ +K +KK+ E K + A KL A
Sbjct: 130 EQKQQEEQARKAAAEQKKKAEAAKAKAAAEAAKLKA 165
>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional.
Length = 1388
Score = 60.1 bits (146), Expect = 1e-09
Identities = 43/196 (21%), Positives = 87/196 (44%), Gaps = 15/196 (7%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKK 61
K +E++ K K + K + K K +K+E+++K++ + K + + K + ++ K
Sbjct: 1150 KEIAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRKL 1209
Query: 62 KEKNKNKNRK-------EEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEE--------KK 106
+K NK +++++K K + ++ K+K K E +E +
Sbjct: 1210 DDKPDNKKSNSSGSDQEDDEEQKTKPKKSSVKRLKSKKNNSSKSSEDNDEFSSDDLSKEG 1269
Query: 107 KTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKK 166
K KN K + + K + + +K K K +K E KKKKK +K
Sbjct: 1270 KPKNAPKRVSAVQYSPPPPSKRPDGESNGGSKPSSPTKKKVKKRLEGSLAALKKKKKSEK 1329
Query: 167 RTKKKEEEKRKNEKAV 182
+T +K++ K + ++A
Sbjct: 1330 KTARKKKSKTRVKQAS 1345
Score = 56.2 bits (136), Expect = 2e-08
Identities = 36/190 (18%), Positives = 82/190 (43%), Gaps = 9/190 (4%)
Query: 3 NKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKK 62
+ EEK+ K++R K K K K ++ + +K+ KKK+K+ +K+K KR
Sbjct: 1145 EEVEEKEIAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSD 1204
Query: 63 EKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEE 122
EK K ++ + KK ++ ++ + K+ K + +K + ++ ++ ++
Sbjct: 1205 EKRKLDDKPDNKKSNSSGSDQEDDEEQKTKPKKSSVKRLKSKKNNSSKSSEDNDEFSSDD 1264
Query: 123 EEKKKEAEEKK---------KKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEE 173
K+ + + K+ ++ + KKK KK+ + K++
Sbjct: 1265 LSKEGKPKNAPKRVSAVQYSPPPPSKRPDGESNGGSKPSSPTKKKVKKRLEGSLAALKKK 1324
Query: 174 EKRKNEKAVR 183
+K + + A +
Sbjct: 1325 KKSEKKTARK 1334
Score = 55.1 bits (133), Expect = 5e-08
Identities = 45/200 (22%), Positives = 81/200 (40%), Gaps = 11/200 (5%)
Query: 1 CKNKKEEKKKKKKRRTKKKEKNKNKSRKE-EEEEKRTKKKEKNKKNKNKSRKEEEKKKRT 59
+ K + K K + K K K K K +K+ ++ + N K + K + K
Sbjct: 1155 EQRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRKLDDKPD 1214
Query: 60 KKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEE--------KKKTKNK 111
KK + ++++++++K K + ++ K+K K E +E + K KN
Sbjct: 1215 NKKSNSSGSDQEDDEEQKTKPKKSSVKRLKSKKNNSSKSSEDNDEFSSDDLSKEGKPKNA 1274
Query: 112 EKNKNKSRKEEEEKKKEAEEKKK--KRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTK 169
K + + K + + + K K K R E KKKKK +KK K
Sbjct: 1275 PKRVSAVQYSPPPPSKRPDGESNGGSKPSSPTKKKVKKRLEGSLAALKKKKKSEKKTARK 1334
Query: 170 KKEEEKRKNEKAVRLTKLSA 189
KK + + K A + ++L
Sbjct: 1335 KKSKTRVKQASASQSSRLLR 1354
Score = 50.4 bits (121), Expect = 1e-06
Identities = 45/185 (24%), Positives = 83/185 (44%), Gaps = 6/185 (3%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKK 61
K K E+ + +++ K+ EK KN + K+ E K +E ++ + KE K++R K
Sbjct: 1101 KEKVEKLNAELEKKEKELEKLKNTTPKDMWLEDLDKFEEALEEQEEVEEKEIAKEQRLKS 1160
Query: 62 KEKNKNKNRKEEKKKKKKRRTKKKEK------NKNKSRKEEKKKEAEEEKKKTKNKEKNK 115
K K K ++ K KKK+++ KK + + K E + K NK+ N
Sbjct: 1161 KTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRKLDDKPDNKKSNS 1220
Query: 116 NKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEK 175
+ S +E++E++K +K + K +KN + E+ +E K+ K + K
Sbjct: 1221 SGSDQEDDEEQKTKPKKSSVKRLKSKKNNSSKSSEDNDEFSSDDLSKEGKPKNAPKRVSA 1280
Query: 176 RKNEK 180
+
Sbjct: 1281 VQYSP 1285
Score = 50.0 bits (120), Expect = 2e-06
Identities = 27/151 (17%), Positives = 60/151 (39%)
Query: 6 EEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKN 65
+E +++K + KK + KS+K + E + + +K K + KR + +
Sbjct: 1225 QEDDEEQKTKPKKSSVKRLKSKKNNSSKSSEDNDEFSSDDLSKEGKPKNAPKRVSAVQYS 1284
Query: 66 KNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEK 125
K + K ++ E A ++KKK++ K K KS+ ++
Sbjct: 1285 PPPPSKRPDGESNGGSKPSSPTKKKVKKRLEGSLAALKKKKKSEKKTARKKKSKTRVKQA 1344
Query: 126 KKEAEEKKKKRTKKKEKNKNKSRKEEEEEEK 156
+ +R +KK+ + + ++ E +
Sbjct: 1345 SASQSSRLLRRPRKKKSDSSSEDDDDSEVDD 1375
Score = 50.0 bits (120), Expect = 2e-06
Identities = 39/173 (22%), Positives = 80/173 (46%), Gaps = 5/173 (2%)
Query: 13 KRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKE 72
K + +K K KE E+ K T K+ ++ +K + E+++ ++KE K + K
Sbjct: 1101 KEKVEKLNAELEKKEKELEKLKNTTPKDMWLEDLDKFEEALEEQEEVEEKEIAKEQRLKS 1160
Query: 73 EKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEK 132
+ K K + K K K +KE+KKK++ +K K + N + +E+ K + +
Sbjct: 1161 KTKGKASKLRKPKLK-----KKEKKKKKSSADKSKKASVVGNSKRVDSDEKRKLDDKPDN 1215
Query: 133 KKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKAVRLT 185
KK + ++ ++ +K + ++ K+ K KK +K E+ + +
Sbjct: 1216 KKSNSSGSDQEDDEEQKTKPKKSSVKRLKSKKNNSSKSSEDNDEFSSDDLSKE 1268
Score = 49.7 bits (119), Expect = 2e-06
Identities = 38/188 (20%), Positives = 71/188 (37%), Gaps = 17/188 (9%)
Query: 4 KKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSR----KEEEKKKRT 59
KKE+KKKK KK S++ + +EKR + + K N S +EE+K +
Sbjct: 1176 KKEKKKKKSSADKSKKASVVGNSKRVDSDEKRKLDDKPDNKKSNSSGSDQEDDEEQKTKP 1235
Query: 60 KKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKE------AEEEKKKTKNKEK 113
KK + K++K K + + + +K K + + + +
Sbjct: 1236 KKSSVKRLKSKKNNSSKSSEDNDEFSSDDLSKEGKPKNAPKRVSAVQYSPPPPSKRPDGE 1295
Query: 114 NKNKSRKEEEEKKKEAEEKKKKRTKKKEKNK-------NKSRKEEEEEEKKKKKKKKKKK 166
+ S+ KKK + + K+K K K K ++ + + ++
Sbjct: 1296 SNGGSKPSSPTKKKVKKRLEGSLAALKKKKKSEKKTARKKKSKTRVKQASASQSSRLLRR 1355
Query: 167 RTKKKEEE 174
KKK +
Sbjct: 1356 PRKKKSDS 1363
Score = 48.5 bits (116), Expect = 5e-06
Identities = 36/174 (20%), Positives = 73/174 (41%), Gaps = 1/174 (0%)
Query: 3 NKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKK 62
+K+ + +K+K K K N S ++E+++ K K K K K+ K ++
Sbjct: 1198 SKRVDSDEKRKLDDKPDNKKSNSSGSDQEDDEEQKTKPKKSSVKRLKSKKNNSSKSSEDN 1257
Query: 63 EK-NKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKE 121
++ + + KE K K +R + + K + K + K+K K +
Sbjct: 1258 DEFSSDDLSKEGKPKNAPKRVSAVQYSPPPPSKRPDGESNGGSKPSSPTKKKVKKRLEGS 1317
Query: 122 EEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEK 175
KK+ + +KK KKK K + K + ++ +KKK + + +++
Sbjct: 1318 LAALKKKKKSEKKTARKKKSKTRVKQASASQSSRLLRRPRKKKSDSSSEDDDDS 1371
Score = 44.7 bits (106), Expect = 9e-05
Identities = 34/186 (18%), Positives = 77/186 (41%), Gaps = 19/186 (10%)
Query: 23 KNKSRKEEEEE------KRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKK- 75
N +K+ +E R K K K K + +EE ++ + +++ +
Sbjct: 1029 TNAKKKDLVKELKKLGYVRFKDIIKKKSEKITAEEEEGAEEDDEADDEDDEEELGAAVSY 1088
Query: 76 ------------KKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEE 123
K+K + + + K K ++ K ++ + +K + + ++E E
Sbjct: 1089 DYLLSMPIWSLTKEKVEKLNAELEKKEKELEKLKNTTPKDMWLEDLDKFEEALEEQEEVE 1148
Query: 124 EKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKAVR 183
EK+ E++ K +TK K K + +++E++KKK K KK + ++ +++ +
Sbjct: 1149 EKEIAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRK 1208
Query: 184 LTKLSA 189
L
Sbjct: 1209 LDDKPD 1214
Score = 41.6 bits (98), Expect = 8e-04
Identities = 41/203 (20%), Positives = 76/203 (37%), Gaps = 34/203 (16%)
Query: 6 EEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEE------------ 53
+E KK R K K K++ EEEE + E + ++ +
Sbjct: 1038 KELKKLGYVRFKDIIKKKSEKITAEEEEGAEEDDEADDEDDEEELGAAVSYDYLLSMPIW 1097
Query: 54 ----------EKKKRTKKKEKNKNKNR------KEEKKKKKKRRTKKKEKNKNKSRKEEK 97
+ K+KE K KN E+ K ++ +++E + + KE++
Sbjct: 1098 SLTKEKVEKLNAELEKKEKELEKLKNTTPKDMWLEDLDKFEEALEEQEEVEEKEIAKEQR 1157
Query: 98 KKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKK 157
K KTK K K + +++EKKK+ K + N + +E+ +
Sbjct: 1158 L------KSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRKLDD 1211
Query: 158 KKKKKKKKKRTKKKEEEKRKNEK 180
K KK +E+++ + K
Sbjct: 1212 KPDNKKSNSSGSDQEDDEEQKTK 1234
Score = 41.2 bits (97), Expect = 0.001
Identities = 40/157 (25%), Positives = 67/157 (42%), Gaps = 1/157 (0%)
Query: 38 KKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNK-NKSRKEE 96
K EK K KE EK K T K+ K E+ +++ ++KE K + + +
Sbjct: 1103 KVEKLNAELEKKEKELEKLKNTTPKDMWLEDLDKFEEALEEQEEVEEKEIAKEQRLKSKT 1162
Query: 97 KKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEK 156
K K ++ K K K KEK K KS ++ +K K+ + +K K +K ++
Sbjct: 1163 KGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRKLDDKPDNKKSNSSG 1222
Query: 157 KKKKKKKKKKRTKKKEEEKRKNEKAVRLTKLSAFGIS 193
++ +++K KK KR K +K S
Sbjct: 1223 SDQEDDEEQKTKPKKSSVKRLKSKKNNSSKSSEDNDE 1259
Score = 40.4 bits (95), Expect = 0.002
Identities = 27/135 (20%), Positives = 52/135 (38%), Gaps = 5/135 (3%)
Query: 1 CKNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTK 60
K+KK K + + + +K K + KR + + +K E
Sbjct: 1243 LKSKKNNSSKSSEDNDEFSSDDLSKEGKPKNAPKRVSAVQYSPPPPSKRPDGESNGGSKP 1302
Query: 61 KKEKNKNKNRKEEK----KKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKN 116
K ++ E KKKK +++KK K KS+ K+ A + + + K K+
Sbjct: 1303 SSPTKKKVKKRLEGSLAALKKKK-KSEKKTARKKKSKTRVKQASASQSSRLLRRPRKKKS 1361
Query: 117 KSRKEEEEKKKEAEE 131
S E+++ + +
Sbjct: 1362 DSSSEDDDDSEVDDS 1376
Score = 35.8 bits (83), Expect = 0.042
Identities = 21/103 (20%), Positives = 43/103 (41%), Gaps = 3/103 (2%)
Query: 5 KEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEK 64
+ KR + S+ +K+ KK+ + K +K+ EKK KKK K
Sbjct: 1282 QYSPPPPSKRPDGES---NGGSKPSSPTKKKVKKRLEGSLAALKKKKKSEKKTARKKKSK 1338
Query: 65 NKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKK 107
+ K + + RR +KK+ + + ++ + + E++
Sbjct: 1339 TRVKQASASQSSRLLRRPRKKKSDSSSEDDDDSEVDDSEDEDD 1381
Score = 33.5 bits (77), Expect = 0.23
Identities = 20/124 (16%), Positives = 48/124 (38%), Gaps = 5/124 (4%)
Query: 4 KKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKE 63
KE K K +R + + K + E K + K ++ E K+
Sbjct: 1266 SKEGKPKNAPKRVSAVQYSPPPPSKRPDGESNGGSKPSSPTKKKVKKRLE--GSLAALKK 1323
Query: 64 KNKNKN---RKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRK 120
K K++ RK++ K + K+ + + + +++K + E+ ++ +
Sbjct: 1324 KKKSEKKTARKKKSKTRVKQASASQSSRLLRRPRKKKSDSSSEDDDDSEVDDSEDEDDED 1383
Query: 121 EEEE 124
+E++
Sbjct: 1384 DEDD 1387
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional.
Length = 520
Score = 57.5 bits (140), Expect = 6e-09
Identities = 44/169 (26%), Positives = 81/169 (47%), Gaps = 7/169 (4%)
Query: 1 CKNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKN------KSRKEEE 54
K E K K+ + K+ + K + ++E + KE+ K +N + R+ E
Sbjct: 25 RKKIAEAKIKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNEL 84
Query: 55 KKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKN 114
+K + +K +N +RK E +K++ +KKEK + ++E +KKE E E+ + ++
Sbjct: 85 QKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQEL 144
Query: 115 KNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKK 163
+ S EE K+ EK ++ + E EEE +E+ KK K+
Sbjct: 145 ERISGLTAEEAKEILLEKVEEEA-RHEAAVLIKEIEEEAKEEADKKAKE 192
Score = 51.3 bits (124), Expect = 5e-07
Identities = 29/124 (23%), Positives = 67/124 (54%), Gaps = 8/124 (6%)
Query: 55 KKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKE-----KNKNKSRKEEKKKEAEEEKKKTK 109
KK K ++ + + ++ ++ KK+ KKE K + + E +KE E + + +
Sbjct: 26 KKIAEAKIKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQ 85
Query: 110 NKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTK 169
EK + ++E ++K E EK+++ +KKEK + K++E E+K+++ ++ +++ +
Sbjct: 86 KLEK-RLLQKEENLDRKLELLEKREEELEKKEKELEQ--KQQELEKKEEELEELIEEQLQ 142
Query: 170 KKEE 173
+ E
Sbjct: 143 ELER 146
Score = 50.2 bits (121), Expect = 1e-06
Identities = 26/118 (22%), Positives = 67/118 (56%), Gaps = 8/118 (6%)
Query: 66 KNKNRKEEKKKKKKRRTKKKEKNKN-KSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEE-- 122
K + K+ +++ + +E K ++ K+E EA+EE K +N+ + + + R+ E
Sbjct: 26 KKIAEAKIKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQ 85
Query: 123 --EEK---KKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEK 175
E++ K+E ++K + +K+E+ K KE E+++++ +KK+++ + +++ ++
Sbjct: 86 KLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQE 143
Score = 50.2 bits (121), Expect = 1e-06
Identities = 43/124 (34%), Positives = 68/124 (54%), Gaps = 11/124 (8%)
Query: 77 KKKRRTKKKE-KNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEK---KKEAE-E 131
KK K KE + + K EE KKEAE KK+ + K + + E EK ++ E +
Sbjct: 26 KKIAEAKIKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQ 85
Query: 132 KKKKRTKKKEKNKNKS----RKEEEEEEKKKKKKKKKKKRTKKKEEE--KRKNEKAVRLT 185
K +KR +KE+N ++ K EEE EKK+K+ ++K++ +KKEEE + E+ L
Sbjct: 86 KLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELE 145
Query: 186 KLSA 189
++S
Sbjct: 146 RISG 149
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and
chromosome partitioning].
Length = 1163
Score = 57.4 bits (139), Expect = 8e-09
Identities = 34/202 (16%), Positives = 85/202 (42%), Gaps = 16/202 (7%)
Query: 4 KKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKE 63
++E ++ +++ +KE + KS EE E+ + +E+ + K + + E + +++
Sbjct: 252 EEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERL 311
Query: 64 KNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKK---KTKNKEKNKNKSRK 120
+ +E +++ ++ + K + + +E +E E+ + K + + K +
Sbjct: 312 EELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALL 371
Query: 121 EEEEKKKEAEEKK-------------KKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKR 167
EE E+ EA ++ + K+E + R E E + K++ K+
Sbjct: 372 EELEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELE 431
Query: 168 TKKKEEEKRKNEKAVRLTKLSA 189
+ +E + E L +L
Sbjct: 432 AELEELQTELEELNEELEELEE 453
Score = 55.1 bits (133), Expect = 4e-08
Identities = 36/182 (19%), Positives = 94/182 (51%), Gaps = 1/182 (0%)
Query: 4 KKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKE 63
+ ++ +++ ++E + + R EE EE+ +E K K + + EEK++ +++
Sbjct: 736 QSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEEL 795
Query: 64 KNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEE 123
+ + +E +++ + + + + R E++ +E EEE ++ + K + +E E
Sbjct: 796 EELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELE 855
Query: 124 EKKKEAEEK-KKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKAV 182
++ +E +E+ ++ +K+E EEE+EE +++ ++ + + + KEE ++ E+
Sbjct: 856 KELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLE 915
Query: 183 RL 184
L
Sbjct: 916 EL 917
Score = 53.9 bits (130), Expect = 9e-08
Identities = 31/190 (16%), Positives = 86/190 (45%), Gaps = 6/190 (3%)
Query: 1 CKNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTK 60
+ + E ++ ++R + KEK + + EE E ++ E+ ++++E E+K
Sbjct: 311 LEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSAL 370
Query: 61 KKEKNKNKNRKEEKKKKKKRRTKKKEKNKNK-SRKEEKKKEAEEEKKKTKNKEKNKNKSR 119
+E + E +++ + + +N+ + + + EE ++ + ++ +
Sbjct: 371 LEEL---EELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEEL 427
Query: 120 KEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNE 179
KE E + +E + + + +E + + + EE + K+ +++ + + + + EK +
Sbjct: 428 KELEAELEELQTELE--ELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSS 485
Query: 180 KAVRLTKLSA 189
RL +L A
Sbjct: 486 LEARLDRLEA 495
Score = 52.8 bits (127), Expect = 3e-07
Identities = 36/173 (20%), Positives = 88/173 (50%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKK 61
+ + E+ K + ++ + K ++ +EE EE + +E ++ R+ E ++R ++
Sbjct: 766 ELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRER 825
Query: 62 KEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKE 121
E+ + +E ++ ++K ++E + + EE K+E EE + + + E + +E
Sbjct: 826 LEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEE 885
Query: 122 EEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEE 174
+EE ++E E + + + KE+ + + EE E K ++ + + + ++ EEE
Sbjct: 886 KEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEE 938
Score = 52.0 bits (125), Expect = 4e-07
Identities = 31/167 (18%), Positives = 75/167 (44%)
Query: 15 RTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEK 74
+ +K+E + R EE E+ E+ +K K ++ EK +R ++ + +
Sbjct: 171 KERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALL 230
Query: 75 KKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKK 134
K K K+ E+ + + + E++ E +E+ + KE + KS EE ++ E +++
Sbjct: 231 LAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEEL 290
Query: 135 KRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKA 181
K++ + E ++ + + ++ + ++ +EK + K
Sbjct: 291 LELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKE 337
Score = 51.3 bits (123), Expect = 6e-07
Identities = 27/183 (14%), Positives = 78/183 (42%), Gaps = 1/183 (0%)
Query: 7 EKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKE-KNKKNKNKSRKEEEKKKRTKKKEKN 65
++ +K+ +++ + +E +EE +KE + K++ + +EE ++ + + E
Sbjct: 235 KELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELK 294
Query: 66 KNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEK 125
+ E + + R ++ E + + ++ + + E K + +E+ E+
Sbjct: 295 EEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLA 354
Query: 126 KKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKAVRLT 185
+ E +++ + + + E EE + + + + R + +E ++ RL
Sbjct: 355 ELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLE 414
Query: 186 KLS 188
+LS
Sbjct: 415 RLS 417
Score = 51.3 bits (123), Expect = 7e-07
Identities = 29/193 (15%), Positives = 79/193 (40%), Gaps = 5/193 (2%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKK 61
K + E + K+ + + + +EE + +E ++ + ++ EE K ++
Sbjct: 219 KAELRELELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEE 278
Query: 62 KEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEK-----NKN 116
+ + ++E + K++ + E + + R EE + E EE +++ + ++ +
Sbjct: 279 LREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEE 338
Query: 117 KSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKR 176
+E ++ E + + K++ + K + EE EE + +++ + + E
Sbjct: 339 LEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNE 398
Query: 177 KNEKAVRLTKLSA 189
E + L
Sbjct: 399 LEELKREIESLEE 411
Score = 51.3 bits (123), Expect = 7e-07
Identities = 32/201 (15%), Positives = 88/201 (43%), Gaps = 5/201 (2%)
Query: 6 EEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKN 65
EE K+K + ++ E+ + + E+ ++ ++ + K + EE ++ +E+
Sbjct: 326 EELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREEL 385
Query: 66 KNKNRKEEKKKKKKRRTKK-----KEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRK 120
+ + + + K+ +E+ + S + E KE +E + + + + +
Sbjct: 386 AELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELN 445
Query: 121 EEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEK 180
EE E+ +E E+ + R K+ E+ + ++E + EK+ + + R + ++ +
Sbjct: 446 EELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRASQGVRA 505
Query: 181 AVRLTKLSAFGISGYLLQWIR 201
+ + G+ G + + I+
Sbjct: 506 VLEALESGLPGVYGPVAELIK 526
Score = 50.9 bits (122), Expect = 9e-07
Identities = 31/188 (16%), Positives = 87/188 (46%), Gaps = 2/188 (1%)
Query: 4 KKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKE 63
+K E++ +K R ++ + + K + +++ ++ + + + EE+ + +++
Sbjct: 203 EKLERQAEKAERYQELKAELRELELALLLAKLKELRKELEELEEELSRLEEELEELQEEL 262
Query: 64 KNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEE 123
+ K +E K + ++ R + +E + +E+ +E E E + + + +E E
Sbjct: 263 EEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELE 322
Query: 124 EKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEE--KKKKKKKKKKKRTKKKEEEKRKNEKA 181
E+ +E +EK + ++ E+ + + E+ ++ K++ ++K +E E+
Sbjct: 323 ERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALR 382
Query: 182 VRLTKLSA 189
L +L A
Sbjct: 383 EELAELEA 390
Score = 49.7 bits (119), Expect = 2e-06
Identities = 28/187 (14%), Positives = 81/187 (43%), Gaps = 9/187 (4%)
Query: 2 KNKKEEKKKKKKRRTK---------KKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKE 52
+ + ++ K + R K+ + + + +EE + +E ++ + ++
Sbjct: 210 EKAERYQELKAELRELELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEI 269
Query: 53 EEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKE 112
EE K ++ + + ++E + K++ + E + + R EE + E EE +++ + +
Sbjct: 270 EELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELK 329
Query: 113 KNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKE 172
+ ++E EE++ EE ++ + +E + K E+ ++ + ++ + E
Sbjct: 330 EKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELE 389
Query: 173 EEKRKNE 179
E +
Sbjct: 390 AELAEIR 396
Score = 48.9 bits (117), Expect = 4e-06
Identities = 28/185 (15%), Positives = 83/185 (44%), Gaps = 3/185 (1%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKK 61
+ ++E + K++ + E + + R EE E + + +E+ ++ K K +E+ + +
Sbjct: 285 ELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERET 344
Query: 62 KEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKE 121
+ + E ++ K++ K EE + EE + + + +E
Sbjct: 345 LLEELEQLLAELEEAKEELEEKLSA---LLEELEELFEALREELAELEAELAEIRNELEE 401
Query: 122 EEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKA 181
+ + + EE+ ++ +++ E K + ++ E E E+ + + ++ + ++ EE+ +
Sbjct: 402 LKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDR 461
Query: 182 VRLTK 186
++ +
Sbjct: 462 LKELE 466
Score = 47.0 bits (112), Expect = 1e-05
Identities = 35/194 (18%), Positives = 94/194 (48%), Gaps = 12/194 (6%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNK--------NKSRKEE 53
++ EE +++ + ++ E+ K + EEE ++ + + + + + + ++
Sbjct: 701 EDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERL 760
Query: 54 EKKKRTKKKEKNKNKNRKEE----KKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTK 109
E+ + + + KEE ++K++ + + +E + E + E E + +
Sbjct: 761 EELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLE 820
Query: 110 NKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTK 169
+ + + +E EE+ +E EEK + ++ E+ + + + +EE E+ + +K++ + K
Sbjct: 821 QRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELK 880
Query: 170 KKEEEKRKNEKAVR 183
+ EEEK + E+ +R
Sbjct: 881 ELEEEKEELEEELR 894
Score = 47.0 bits (112), Expect = 1e-05
Identities = 37/193 (19%), Positives = 89/193 (46%), Gaps = 13/193 (6%)
Query: 5 KEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEK 64
KEE ++ + + +E+ + + EE E+R ++ ++ + + +E E ++
Sbjct: 294 KEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLL 353
Query: 65 NKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKK-------------TKNK 111
+ + KEE ++K ++ E+ R+E + EAE + + +
Sbjct: 354 AELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERL 413
Query: 112 EKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKK 171
E+ + +EE K+ E ++ +T+ +E N+ EE+ EE + + K+ +++ + +
Sbjct: 414 ERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAELQ 473
Query: 172 EEEKRKNEKAVRL 184
EE +R ++ L
Sbjct: 474 EELQRLEKELSSL 486
Score = 47.0 bits (112), Expect = 2e-05
Identities = 27/176 (15%), Positives = 87/176 (49%)
Query: 4 KKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKE 63
+++ + +++ ++E + + R + E + +++ ++ + + + EE+ + ++K
Sbjct: 785 EEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKL 844
Query: 64 KNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEE 123
+ +E +K+ ++ + + +E K E++ KE EEEK++ + + + E +
Sbjct: 845 DELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELK 904
Query: 124 EKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNE 179
E+ ++ E+ ++ K E+ + + + EEE E++ + + + + + E+
Sbjct: 905 EEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELEREIERLEEEIEA 960
Score = 46.6 bits (111), Expect = 2e-05
Identities = 33/185 (17%), Positives = 90/185 (48%), Gaps = 10/185 (5%)
Query: 6 EEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRT------ 59
+E+K++ +R+ ++ E+N + EE ++ +K + + K + +E + + R
Sbjct: 171 KERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALL 230
Query: 60 ----KKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNK 115
K+ K + +E + +++ ++E + + EE K E EE +++ + ++
Sbjct: 231 LAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEEL 290
Query: 116 NKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEK 175
+ ++E EE + E +++ + + + + + EE +EK + K++ ++R EE +
Sbjct: 291 LELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELE 350
Query: 176 RKNEK 180
+ +
Sbjct: 351 QLLAE 355
Score = 46.6 bits (111), Expect = 2e-05
Identities = 30/186 (16%), Positives = 83/186 (44%), Gaps = 4/186 (2%)
Query: 3 NKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKK 62
+ EE ++ + ++ EK K ++ E+ +R ++ + + + + K+ K+
Sbjct: 182 ERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALLLAKLKELRKEL 241
Query: 63 EKNKNK-NRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKE 121
E+ + + +R EE+ ++ + ++ EK + + E ++ E E+ + + E + E
Sbjct: 242 EELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELE 301
Query: 122 EEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKK---KKKKKKKKRTKKKEEEKRKN 178
E ++ + ++ + + + KE+ E K++ ++ ++ E E+ K
Sbjct: 302 GEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKE 361
Query: 179 EKAVRL 184
E +L
Sbjct: 362 ELEEKL 367
Score = 45.5 bits (108), Expect = 4e-05
Identities = 36/181 (19%), Positives = 86/181 (47%), Gaps = 6/181 (3%)
Query: 7 EKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNK 66
+++ ++ + + KEE EE K++ ++ + + EE ++R E+
Sbjct: 757 QERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALEREL 816
Query: 67 NKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKK 126
+ ++ +++ ++E + + + +E ++E EE +K+ E+ K + + E EK+
Sbjct: 817 ESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKE---LEELKEELEELEAEKE 873
Query: 127 KEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKAVRLTK 186
+ +E K+ +K+E + E E E + K++ +K R + +E E + V L +
Sbjct: 874 ELEDELKELEEEKEELEE---ELRELESELAELKEEIEKLRERLEELEAKLERLEVELPE 930
Query: 187 L 187
L
Sbjct: 931 L 931
Score = 43.9 bits (104), Expect = 1e-04
Identities = 24/171 (14%), Positives = 67/171 (39%), Gaps = 5/171 (2%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNK-----KNKNKSRKEEEKK 56
+ EE ++ + KE+ + K EE + + + + + R E E+
Sbjct: 343 ETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEEL 402
Query: 57 KRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKN 116
KR + + + + E + K+ + + + + + E+ E EE ++ + +++
Sbjct: 403 KREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRL 462
Query: 117 KSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKR 167
K + E + +E ++ +K E ++ E+ + + + +
Sbjct: 463 KELERELAELQEELQRLEKELSSLEARLDRLEAEQRASQGVRAVLEALESG 513
Score = 42.8 bits (101), Expect = 3e-04
Identities = 31/186 (16%), Positives = 91/186 (48%), Gaps = 6/186 (3%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKK 61
K EE+ K K + E + R++ EE +R ++ K + + E+ + + +
Sbjct: 683 LEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEEL 742
Query: 62 KEK------NKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNK 115
+E+ + ++ ++ +++ + ++ K K EE +++ + +++ + E+
Sbjct: 743 EEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEEL 802
Query: 116 NKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEK 175
++ + + ++E E +++R + +++ + + EE EEK + +++ ++ K+ EE K
Sbjct: 803 EEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELK 862
Query: 176 RKNEKA 181
+ E+
Sbjct: 863 EELEEL 868
Score = 42.0 bits (99), Expect = 5e-04
Identities = 27/181 (14%), Positives = 89/181 (49%), Gaps = 4/181 (2%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKK 61
++ ++ +++ ++E + + + +E EE+ + +++ ++ K + + E +K+ +
Sbjct: 818 SLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELED 877
Query: 62 KEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKE 121
+ K + ++E +++ ++ ++ E + + E+ +E E + ++ + + + +E
Sbjct: 878 ELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEE 937
Query: 122 EEEKKKEAEEKKKKRTKKKEKNK----NKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRK 177
E E E E +++ ++E N EE EE +++ ++ K ++ ++ +EK
Sbjct: 938 EYEDTLETELEREIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLL 997
Query: 178 N 178
Sbjct: 998 E 998
Score = 41.2 bits (97), Expect = 9e-04
Identities = 29/178 (16%), Positives = 90/178 (50%), Gaps = 1/178 (0%)
Query: 4 KKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKE 63
+ + +K +++ ++ K E + EE + + + + ++ K + EE+ ++ + +
Sbjct: 680 EAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRL 739
Query: 64 KNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEE 123
+ + +E +++ ++ + + +E + EE + +EE ++ + K + + +E E
Sbjct: 740 EELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELE 799
Query: 124 EKKKEAEEKK-KKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEK 180
E+ +EAE + + + + + R E+E EE +++ ++ ++K + +EE + ++
Sbjct: 800 EELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKE 857
Score = 39.7 bits (93), Expect = 0.003
Identities = 33/186 (17%), Positives = 82/186 (44%), Gaps = 13/186 (6%)
Query: 4 KKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEE-KKKRTKKK 62
++ E+ +++ ++K + +E E+E K+E + K E+E K+ +K+
Sbjct: 828 QEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKE 887
Query: 63 EKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEE 122
E + E + + K +K + + + ++ E E + + + +E+ ++ E
Sbjct: 888 ELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETEL 947
Query: 123 EEKKKEAEEKKKKR------------TKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKK 170
E + + EE+ + ++ + KS++E+ EE K+K + ++ +K
Sbjct: 948 EREIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKEK 1007
Query: 171 KEEEKR 176
+E K
Sbjct: 1008 RERFKE 1013
Score = 38.9 bits (91), Expect = 0.005
Identities = 29/173 (16%), Positives = 79/173 (45%), Gaps = 6/173 (3%)
Query: 10 KKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKN 69
+ K+ +K + K + E E + +K E+ + K+ + + + + +
Sbjct: 657 RNKRSSLAQKRELKELEEELAELEAQLEKLEE-ELKSLKNELRSLEDLLEELRRQLEELE 715
Query: 70 RKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEA 129
R+ E+ K++ +++ + +E +++ E E++ + +E+ + EE+ +
Sbjct: 716 RQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEEL-----EEELESL 770
Query: 130 EEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKAV 182
EE K ++ E+ + K + +EE E+ +++ ++ ++R E E E+
Sbjct: 771 EEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRR 823
Score = 38.2 bits (89), Expect = 0.009
Identities = 28/174 (16%), Positives = 85/174 (48%), Gaps = 6/174 (3%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKK 61
+ K +E +++ + K+ E+ K + + E E++ + + K + + + +EE ++ ++
Sbjct: 841 EEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESEL 900
Query: 62 KEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKE 121
E + + E+ ++ + + ++ + + +EE ++E E+ + +E + + E
Sbjct: 901 AELKEEIEKLRERLEELEAK-LERLEVELPELEEELEEEYEDTLETELEREIERLEEEIE 959
Query: 122 EEEK-----KKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKK 170
+E EE +++ + K + ++ +E+ E ++ K+K++R K+
Sbjct: 960 ALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKEKRERFKE 1013
Score = 32.4 bits (74), Expect = 0.56
Identities = 28/135 (20%), Positives = 68/135 (50%), Gaps = 4/135 (2%)
Query: 49 SRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKT 108
R+ +E ++ + E K +E K K + R+ + + + + EE +++ EE K++
Sbjct: 666 KRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKREL 725
Query: 109 KNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRT 168
E+ + + EE ++E EE +++ + +E+ + EEE E ++ K K+
Sbjct: 726 AALEEELEQLQSRLEELEEELEELEEELEELQERLEEL----EEELESLEEALAKLKEEI 781
Query: 169 KKKEEEKRKNEKAVR 183
++ EE+++ ++ +
Sbjct: 782 EELEEKRQALQEELE 796
Score = 31.6 bits (72), Expect = 0.92
Identities = 25/142 (17%), Positives = 65/142 (45%), Gaps = 9/142 (6%)
Query: 57 KRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKN 116
+ +K + + K+ K E + + + + + + R+ E+ K ++ + +++
Sbjct: 680 EAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRL 739
Query: 117 KSRKEEEEKKKEAEEKKKKRTKKKE---------KNKNKSRKEEEEEEKKKKKKKKKKKR 167
+ +EE E+ +E E+ ++R ++ E K K EE EE+++ +++ ++
Sbjct: 740 EELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELE 799
Query: 168 TKKKEEEKRKNEKAVRLTKLSA 189
+ +E E+R + L L
Sbjct: 800 EELEEAERRLDALERELESLEQ 821
Score = 30.1 bits (68), Expect = 2.8
Identities = 25/119 (21%), Positives = 70/119 (58%), Gaps = 3/119 (2%)
Query: 67 NKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKK 126
++N++ +K++ + ++E + +++ E+ ++E + K + ++ E + R++ EE +
Sbjct: 656 SRNKRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELE 715
Query: 127 KEAEEKKKKRTKKKEKNK--NKSRKE-EEEEEKKKKKKKKKKKRTKKKEEEKRKNEKAV 182
++ EE K++ +E+ + +E EEE E+ +++ ++ ++R ++ EEE E+A+
Sbjct: 716 RQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEAL 774
Score = 29.7 bits (67), Expect = 3.2
Identities = 26/150 (17%), Positives = 72/150 (48%), Gaps = 9/150 (6%)
Query: 1 CKNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTK 60
K + EE + +K+ + ++ + + ++E EEE R + E + + + E ++
Sbjct: 861 LKEELEELEAEKEELEDELKELEEE-KEELEEELRELESELAELKEEIEKLRERLEELEA 919
Query: 61 KKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKE--------AEEEKKKTKNKE 112
K E+ + + + E++ +++ + + + + + E++ E A EE ++ + +
Sbjct: 920 KLERLEVELPELEEELEEEYEDTLETELEREIERLEEEIEALGPVNLRAIEEYEEVEERY 979
Query: 113 KNKNKSRKEEEEKKKEAEEKKKKRTKKKEK 142
+ R++ EE K++ E ++ K+K +
Sbjct: 980 EELKSQREDLEEAKEKLLEVIEELDKEKRE 1009
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain. This domain is
found at the N terminus of SMC proteins. The SMC
(structural maintenance of chromosomes) superfamily
proteins have ATP-binding domains at the N- and
C-termini, and two extended coiled-coil domains
separated by a hinge in the middle. The eukaryotic SMC
proteins form two kind of heterodimers: the SMC1/SMC3
and the SMC2/SMC4 types. These heterodimers constitute
an essential part of higher order complexes, which are
involved in chromatin and DNA dynamics. This family also
includes the RecF and RecN proteins that are involved in
DNA metabolism and recombination.
Length = 1162
Score = 56.9 bits (137), Expect = 1e-08
Identities = 42/183 (22%), Positives = 94/183 (51%), Gaps = 4/183 (2%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKK 61
KE+ + +++ N+ R + +E ++E+ + +K + KEEE + K
Sbjct: 214 YQLKEKLELEEENLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQELEKEEEILAQVLK 273
Query: 62 KEKNKNKNRKEEKKKK----KKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNK 117
+ K + K +K ++++ K+ K E K + RK + +++ +E +K+ K EK K
Sbjct: 274 ENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKELKKLEKELKK 333
Query: 118 SRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRK 177
++E EE +KE +E + KR ++E+ + + +E+ E+ +++ KKK +++ +
Sbjct: 334 EKEEIEELEKELKELEIKREAEEEEEEQLEKLQEKLEQLEEELLAKKKLESERLSSAAKL 393
Query: 178 NEK 180
E+
Sbjct: 394 KEE 396
Score = 52.3 bits (125), Expect = 3e-07
Identities = 40/179 (22%), Positives = 93/179 (51%)
Query: 3 NKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKK 62
++E+ + K+ +K+E+ + KE +EE++ KK ++ + +EE K + K +
Sbjct: 248 RDEQEEIESSKQELEKEEEILAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLE 307
Query: 63 EKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEE 122
+ + K ++ +K+ ++ +K+ K + + +E +K+ E E K+ +E+ + + +E
Sbjct: 308 RRKVDDEEKLKESEKELKKLEKELKKEKEEIEELEKELKELEIKREAEEEEEEQLEKLQE 367
Query: 123 EEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKA 181
+ ++ E E KK+ + + + KEEE E K +++K+ K ++EE E+
Sbjct: 368 KLEQLEEELLAKKKLESERLSSAAKLKEEELELKNEEEKEAKLLLELSEQEEDLLKEEK 426
Score = 51.1 bits (122), Expect = 8e-07
Identities = 38/184 (20%), Positives = 97/184 (52%)
Query: 6 EEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKN 65
EK+KKK+R K E+ +N + + E+ ++ K K+ K+ + + K++ + +E+N
Sbjct: 167 REKRKKKERLKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEN 226
Query: 66 KNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEK 125
+ +++ ++ +++ + + K++ +EE+ + ++NK + ++++ ++
Sbjct: 227 LLYLDYLKLNEERIDLLQELLRDEQEEIESSKQELEKEEEILAQVLKENKEEEKEKKLQE 286
Query: 126 KKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKAVRLT 185
++ K++ K E K + RK ++EE+ K+ +K+ KK + K+E++ E L
Sbjct: 287 EELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKELKKLEKELKKEKEEIEELEKELK 346
Query: 186 KLSA 189
+L
Sbjct: 347 ELEI 350
Score = 48.8 bits (116), Expect = 4e-06
Identities = 44/186 (23%), Positives = 94/186 (50%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKK 61
K +++EKK +++ ++ + + + E+R E+ K K K+ EK+ + +K
Sbjct: 276 KEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKELKKLEKELKKEK 335
Query: 62 KEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKE 121
+E + + +E + K++ +++E+ + K E+ +E KKK +++ + KE
Sbjct: 336 EEIEELEKELKELEIKREAEEEEEEQLEKLQEKLEQLEEELLAKKKLESERLSSAAKLKE 395
Query: 122 EEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKA 181
EE + K EEK+ K + + + KEE++EE K ++ ++ TK+ + + K E
Sbjct: 396 EELELKNEEEKEAKLLLELSEQEEDLLKEEKKEELKIVEELEESLETKQGKLTEEKEELE 455
Query: 182 VRLTKL 187
+ KL
Sbjct: 456 KQALKL 461
Score = 48.8 bits (116), Expect = 5e-06
Identities = 39/176 (22%), Positives = 92/176 (52%)
Query: 3 NKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKK 62
N++ ++ R +++E +K E+EEE + ++NK+ + + + +EE+ K K+
Sbjct: 236 NEERIDLLQELLRDEQEEIESSKQELEKEEEILAQVLKENKEEEKEKKLQEEELKLLAKE 295
Query: 63 EKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEE 122
E+ + +++K K KE K + E++ K+ +EE ++ + + K R+ E
Sbjct: 296 EEELKSELLKLERRKVDDEEKLKESEKELKKLEKELKKEKEEIEELEKELKELEIKREAE 355
Query: 123 EEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKN 178
EE++++ E+ ++K + +E+ K + E E K K+++ + ++E+E +
Sbjct: 356 EEEEEQLEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKNEEEKEAKLL 411
Score = 48.0 bits (114), Expect = 7e-06
Identities = 37/189 (19%), Positives = 95/189 (50%), Gaps = 4/189 (2%)
Query: 1 CKNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTK 60
+ K +E K K++ K+ + KE+ E + + N+ R + ++
Sbjct: 194 EELKLQELKLKEQA----KKALEYYQLKEKLELEEENLLYLDYLKLNEERIDLLQELLRD 249
Query: 61 KKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRK 120
++E+ ++ ++ EK+++ + K+ K + K +K ++++ K++ + K + R+
Sbjct: 250 EQEEIESSKQELEKEEEILAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERR 309
Query: 121 EEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEK 180
+ ++++K E +K+ + +KE K K EE E+E K+ + K++ + ++++ EK + +
Sbjct: 310 KVDDEEKLKESEKELKKLEKELKKEKEEIEELEKELKELEIKREAEEEEEEQLEKLQEKL 369
Query: 181 AVRLTKLSA 189
+L A
Sbjct: 370 EQLEEELLA 378
Score = 48.0 bits (114), Expect = 7e-06
Identities = 46/179 (25%), Positives = 100/179 (55%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKK 61
+ KK+E++ K++ + K EK + + K +E + + ++ K + K K ++EEE+K R KK
Sbjct: 701 EIKKKEQRIKEELKKLKLEKEELLADKVQEAQDKINEELKLLEQKIKEKEEEEEKSRLKK 760
Query: 62 KEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKE 121
+E+ + K+ K+K+ +K EK K + KEEK K EEE + + + K + + +E
Sbjct: 761 EEEEEEKSELSLKEKELAEEEEKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEE 820
Query: 122 EEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEK 180
E+ ++ E+ K++ ++ + +K E+ E++ ++ +++ + + +E K E+
Sbjct: 821 EQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEE 879
Score = 48.0 bits (114), Expect = 8e-06
Identities = 40/188 (21%), Positives = 95/188 (50%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKK 61
+K+E +K+++ KE + + K+ +EE+ ++ ++ K++ K E +K ++
Sbjct: 256 SSKQELEKEEEILAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEE 315
Query: 62 KEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKE 121
K K K K+ +K+ KK + + +E K E K++ EEE+++ + ++ + +E
Sbjct: 316 KLKESEKELKKLEKELKKEKEEIEELEKELKELEIKREAEEEEEEQLEKLQEKLEQLEEE 375
Query: 122 EEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKA 181
KKK E+ K KE+ +EE+E + + ++++ K++++E+ K +
Sbjct: 376 LLAKKKLESERLSSAAKLKEEELELKNEEEKEAKLLLELSEQEEDLLKEEKKEELKIVEE 435
Query: 182 VRLTKLSA 189
+ + +
Sbjct: 436 LEESLETK 443
Score = 47.7 bits (113), Expect = 1e-05
Identities = 44/181 (24%), Positives = 90/181 (49%)
Query: 4 KKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKE 63
+E+K K+ + KK + + K KEE EE + KE K + + +EE+ +K +K E
Sbjct: 311 VDDEEKLKESEKELKKLEKELKKEKEEIEELEKELKELEIKREAEEEEEEQLEKLQEKLE 370
Query: 64 KNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEE 123
+ + + ++K + ++ + K K + K E++KEA+ + ++ +E + +KEE
Sbjct: 371 QLEEELLAKKKLESERLSSAAKLKEEELELKNEEEKEAKLLLELSEQEEDLLKEEKKEEL 430
Query: 124 EKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKAVR 183
+ +E EE + + K + K + K+ + K K + KK + K+ + K + +
Sbjct: 431 KIVEELEESLETKQGKLTEEKEELEKQALKLLKDKLELKKSEDLLKETKLVKLLEQLELL 490
Query: 184 L 184
L
Sbjct: 491 L 491
Score = 46.5 bits (110), Expect = 2e-05
Identities = 39/187 (20%), Positives = 91/187 (48%)
Query: 1 CKNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTK 60
+ K + K+ +++ + K +S + E R +++ K K+ + K ++ K ++ +
Sbjct: 663 SELKASLSELTKELLAEQELQEKAESELAKNEILRRQEEIKKKEQRIKEELKKLKLEKEE 722
Query: 61 KKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRK 120
+ + + ++ K K KEK + + + KK+E EEEK + KEK + +
Sbjct: 723 LLADKVQEAQDKINEELKLLEQKIKEKEEEEEKSRLKKEEEEEEKSELSLKEKELAEEEE 782
Query: 121 EEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEK 180
+ E+ K E E+++K + +++E + +EE E ++++ +++ K+EE + +
Sbjct: 783 KTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALE 842
Query: 181 AVRLTKL 187
KL
Sbjct: 843 LKEEQKL 849
Score = 46.5 bits (110), Expect = 2e-05
Identities = 43/186 (23%), Positives = 103/186 (55%), Gaps = 2/186 (1%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKK 61
+ KE++++++K R KK+E+ + KS +E++ +++EK +K K +E+E+K + ++
Sbjct: 744 QKIKEKEEEEEKSRLKKEEEEEEKSELSLKEKELAEEEEKTEKLKV--EEEKEEKLKAQE 801
Query: 62 KEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKE 121
+E + +E+ + + E+ + +E ++ E ++++ K + R E
Sbjct: 802 EELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLE 861
Query: 122 EEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKA 181
EE K+E ++ + ++ E+ K K E +EE++K++KK+ +++ K E+++NE
Sbjct: 862 EEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKDNLLEEKENEIE 921
Query: 182 VRLTKL 187
R+ +
Sbjct: 922 ERIAEE 927
Score = 45.3 bits (107), Expect = 5e-05
Identities = 38/180 (21%), Positives = 91/180 (50%)
Query: 1 CKNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTK 60
+ +K KK+++ K + K K EEEE+ K E+ K+ K K+++EE + +
Sbjct: 751 EEEEKSRLKKEEEEEEKSELSLKEKELAEEEEKTEKLKVEEEKEEKLKAQEEELRALEEE 810
Query: 61 KKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRK 120
KE+ + ++ +++++ +++ + KEE+K E E++ + +E+ +
Sbjct: 811 LKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELL 870
Query: 121 EEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEK 180
+E K+E E++K + + + K + + +++E EE+ +K ++K + +E +
Sbjct: 871 QELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKDNLLEEKENEIEERIAEEAII 930
Score = 45.3 bits (107), Expect = 5e-05
Identities = 39/186 (20%), Positives = 95/186 (51%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKK 61
+K E + K +++E+ K K ++ +EE K+ K +++ +++ + K
Sbjct: 682 LQEKAESELAKNEILRRQEEIKKKEQRIKEELKKLKLEKEELLADKVQEAQDKINEELKL 741
Query: 62 KEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKE 121
E+ + +EE+K + K+ +++EK++ +++E +E E+ +K +EK + +E
Sbjct: 742 LEQKIKEKEEEEEKSRLKKEEEEEEKSELSLKEKELAEEEEKTEKLKVEEEKEEKLKAQE 801
Query: 122 EEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKA 181
EE + E E K++ ++E+ + ++ +EEE ++ + K+++ +K E+
Sbjct: 802 EELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLE 861
Query: 182 VRLTKL 187
+TK
Sbjct: 862 EEITKE 867
Score = 44.6 bits (105), Expect = 8e-05
Identities = 42/183 (22%), Positives = 90/183 (49%), Gaps = 7/183 (3%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKK 61
K+EE+ K + + ++++ + + KE E+E + +KE K+ + E+E K+ K
Sbjct: 292 LAKEEEELKSELLKLERRKVDDEEKLKESEKELKKLEKELKKEKEEIEELEKELKELEIK 351
Query: 62 KEKNKNKN-------RKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKN 114
+E + + K E+ +++ KK E + S + K++E E + ++ K +
Sbjct: 352 REAEEEEEEQLEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKNEEEKEAKLL 411
Query: 115 KNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEE 174
S +EE+ K+E +E+ K + +E + K K EE+E+ +K+ K K + ++
Sbjct: 412 LELSEQEEDLLKEEKKEELKIVEELEESLETKQGKLTEEKEELEKQALKLLKDKLELKKS 471
Query: 175 KRK 177
+
Sbjct: 472 EDL 474
Score = 44.2 bits (104), Expect = 1e-04
Identities = 43/187 (22%), Positives = 99/187 (52%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKK 61
K ++ + K K + K K ++EEEE+ R KK+E+ ++ S KE+E + +K
Sbjct: 724 LADKVQEAQDKINEELKLLEQKIKEKEEEEEKSRLKKEEEEEEKSELSLKEKELAEEEEK 783
Query: 62 KEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKE 121
EK K + KEEK K ++ + E+ + + ++++ E+++ +E+ + + +
Sbjct: 784 TEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALEL 843
Query: 122 EEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKA 181
+EE+K E +++ ++E K + +E +E++ +++K K + K+E+EK + ++
Sbjct: 844 KEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKEL 903
Query: 182 VRLTKLS 188
++
Sbjct: 904 EEESQKD 910
Score = 43.8 bits (103), Expect = 2e-04
Identities = 41/189 (21%), Positives = 88/189 (46%), Gaps = 2/189 (1%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRT--KKKEKNKKNKNKSRKEEEKKKRT 59
K K EE+K++K + +++ + + KEE E E+ +K K + +E + +
Sbjct: 786 KLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKE 845
Query: 60 KKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSR 119
++K + + E +++ + +E + EE+K + E E K+ K KE+ K
Sbjct: 846 EQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEE 905
Query: 120 KEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNE 179
+ +++ E +E + + +E + E EE ++ +K+K+ K+EEE+R
Sbjct: 906 ESQKDNLLEEKENEIEERIAEEAIILLKYESEPEELLLEEADEKEKEEDNKEEEEERNKR 965
Query: 180 KAVRLTKLS 188
+ +L
Sbjct: 966 LLLAKEELG 974
Score = 43.4 bits (102), Expect = 2e-04
Identities = 40/189 (21%), Positives = 95/189 (50%), Gaps = 2/189 (1%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKK 61
K ++E K + K +K + + E+E +K K+ +K K+ + KE ++ + ++
Sbjct: 294 KEEEELKSELLKLERRKVDDEEKLKESEKELKKLEKELKKEKEEIEELEKELKELEIKRE 353
Query: 62 KEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKE 121
E+ + + ++ ++K ++ + K K +S + + +EE+ + KN+E+ + K E
Sbjct: 354 AEEEEEEQLEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKNEEEKEAKLLLE 413
Query: 122 EEEKKKEA--EEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNE 179
E++++ EEKK++ +E ++ K+ + E+K++ +K+ K K K E K+ +
Sbjct: 414 LSEQEEDLLKEEKKEELKIVEELEESLETKQGKLTEEKEELEKQALKLLKDKLELKKSED 473
Query: 180 KAVRLTKLS 188
+
Sbjct: 474 LLKETKLVK 482
Score = 43.0 bits (101), Expect = 2e-04
Identities = 46/201 (22%), Positives = 99/201 (49%), Gaps = 13/201 (6%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKK 61
K KEE+K+KK + + K K + + E K ++K +++ +S KE +K ++ K
Sbjct: 273 KENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKELKKLEKELK 332
Query: 62 KEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKE 121
KEK + + ++E K+ + +R ++E+ + + +EK ++ EEE K E + S +
Sbjct: 333 KEKEEIEELEKELKELEIKREAEEEEEEQLEKLQEKLEQLEEELLAKKKLESERLSSAAK 392
Query: 122 EEEKKKEAEEKKKKR-------------TKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRT 168
+E++ E + +++K K+EK + EE EE + K+ K +++
Sbjct: 393 LKEEELELKNEEEKEAKLLLELSEQEEDLLKEEKKEELKIVEELEESLETKQGKLTEEKE 452
Query: 169 KKKEEEKRKNEKAVRLTKLSA 189
+ +++ + + + L K
Sbjct: 453 ELEKQALKLLKDKLELKKSED 473
Score = 42.3 bits (99), Expect = 4e-04
Identities = 45/187 (24%), Positives = 86/187 (45%), Gaps = 3/187 (1%)
Query: 1 CKNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTK 60
K+ + K K KE K EE + + + K E++ +
Sbjct: 627 EGILKDTELTKLLESAKAKESGLRKGVSLEEGLAEKSELKASLSELTKELLAEQELQEKA 686
Query: 61 KKEKNKNKNRKEEKKKKKKRRTKKKEKNKNK---SRKEEKKKEAEEEKKKTKNKEKNKNK 117
+ E KN+ + +++ KKK + K+E K K K + ++K + K +
Sbjct: 687 ESELAKNEILRRQEEIKKKEQRIKEELKKLKLEKEELLADKVQEAQDKINEELKLLEQKI 746
Query: 118 SRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRK 177
KEEEE+K ++++++ K + K K EEEE+ +K K +++K+++ K +EEE R
Sbjct: 747 KEKEEEEEKSRLKKEEEEEEKSELSLKEKELAEEEEKTEKLKVEEEKEEKLKAQEEELRA 806
Query: 178 NEKAVRL 184
E+ ++
Sbjct: 807 LEEELKE 813
Score = 41.9 bits (98), Expect = 6e-04
Identities = 31/173 (17%), Positives = 86/173 (49%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKK 61
+ +E++K +K ++ E+ + + KEE ++ K+E+ ++ K K E +++K ++
Sbjct: 840 ALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEE 899
Query: 62 KEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKE 121
K++ + +++K+ ++K+ +++ + + + + E ++ KEK ++ +E
Sbjct: 900 KKELEEESQKDNLLEEKENEIEERIAEEAIILLKYESEPEELLLEEADEKEKEEDNKEEE 959
Query: 122 EEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEE 174
EE K+ K++ KEE + + KK++ ++++ + E
Sbjct: 960 EERNKRLLLAKEELGNVNLMAIAEFEEKEERYNKDELKKERLEEEKKELLREI 1012
Score = 41.9 bits (98), Expect = 6e-04
Identities = 41/169 (24%), Positives = 87/169 (51%)
Query: 6 EEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKN 65
EE ++ ++ TK++ + ++EE EE++ K + ++K+ K K K+E +++ K
Sbjct: 855 EELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKDNLLE 914
Query: 66 KNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEK 125
+ +N EE+ ++ K E + EE ++ +EE K + +E+NK +EE
Sbjct: 915 EKENEIEERIAEEAIILLKYESEPEELLLEEADEKEKEEDNKEEEEERNKRLLLAKEELG 974
Query: 126 KKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEE 174
+ K++ NK++ +KE EEEKK+ ++ ++ ++ +E
Sbjct: 975 NVNLMAIAEFEEKEERYNKDELKKERLEEEKKELLREIIEETCQRFKEF 1023
Score = 41.5 bits (97), Expect = 8e-04
Identities = 42/186 (22%), Positives = 86/186 (46%), Gaps = 1/186 (0%)
Query: 2 KNKKEEKKKKKKR-RTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTK 60
K +KE KK+K++ +K+ K R+ EEEE+ +K + K + + +KK ++
Sbjct: 326 KLEKELKKEKEEIEELEKELKELEIKREAEEEEEEQLEKLQEKLEQLEEELLAKKKLESE 385
Query: 61 KKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRK 120
+ +E + K ++ + K ++ ++ K+E +EE K + E++ +
Sbjct: 386 RLSSAAKLKEEELELKNEEEKEAKLLLELSEQEEDLLKEEKKEELKIVEELEESLETKQG 445
Query: 121 EEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEK 180
+ E+K+E E++ K K K + K +E + K ++ + +K EE +K K
Sbjct: 446 KLTEEKEELEKQALKLLKDKLELKKSEDLLKETKLVKLLEQLELLLLRQKLEEASQKESK 505
Query: 181 AVRLTK 186
A
Sbjct: 506 AREGLA 511
Score = 40.0 bits (93), Expect = 0.002
Identities = 42/181 (23%), Positives = 90/181 (49%), Gaps = 3/181 (1%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKK 61
EE+ K++ ++++ + K +EEE E ++ K + EEE ++ ++
Sbjct: 804 LRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEE 863
Query: 62 KEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKE 121
K + K+++ + + K E + +++E+KKE EEE +K E+ K +
Sbjct: 864 ITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKDNLLEE---KENEI 920
Query: 122 EEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKA 181
EE +EA K ++ +E ++ ++E+EE+ K++++++ K+ KEE N A
Sbjct: 921 EERIAEEAIILLKYESEPEELLLEEADEKEKEEDNKEEEEERNKRLLLAKEELGNVNLMA 980
Query: 182 V 182
+
Sbjct: 981 I 981
Score = 37.6 bits (87), Expect = 0.014
Identities = 30/160 (18%), Positives = 66/160 (41%)
Query: 30 EEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNK 89
EEE +++K K K+ K +E E + + K++ KK + K K
Sbjct: 160 EEEAAGSREKRKKKERLKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEK 219
Query: 90 NKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRK 149
+ +E + + + + ++EE + + E +K++ + +NK +
Sbjct: 220 LELEEENLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQELEKEEEILAQVLKENKEEE 279
Query: 150 EEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKAVRLTKLSA 189
+E++ ++++ K K++ K E K + K KL
Sbjct: 280 KEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKE 319
Score = 36.1 bits (83), Expect = 0.039
Identities = 37/162 (22%), Positives = 75/162 (46%), Gaps = 1/162 (0%)
Query: 4 KKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKE 63
++E +++K K + KE+ + + +KE EEE + + K+N+ + R EE K +
Sbjct: 877 EEELEEQKLKDELESKEEKEKEEKKELEEESQKDNLLEEKENEIEERIAEEAIILLKYES 936
Query: 64 KNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEE 123
+ + + EE +K+K K+E+ + R K+E + + K + ++E
Sbjct: 937 EPE-ELLLEEADEKEKEEDNKEEEEERNKRLLLAKEELGNVNLMAIAEFEEKEERYNKDE 995
Query: 124 EKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKK 165
KK+ EE+KK+ ++ + + KE E + K
Sbjct: 996 LKKERLEEEKKELLREIIEETCQRFKEFLELFVSINRGLNKV 1037
Score = 29.6 bits (66), Expect = 4.4
Identities = 22/152 (14%), Positives = 61/152 (40%)
Query: 4 KKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKE 63
++E +K + + + + + ++ +E + ++ KEE+ K+ +++
Sbjct: 904 EEESQKDNLLEEKENEIEERIAEEAIILLKYESEPEELLLEEADEKEKEEDNKEEEEERN 963
Query: 64 KNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEE 123
K ++E + +EK + ++ E KK+ EEEKK+ + + R +E
Sbjct: 964 KRLLLAKEELGNVNLMAIAEFEEKEERYNKDELKKERLEEEKKELLREIIEETCQRFKEF 1023
Query: 124 EKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEE 155
+ + + + + + E+ +
Sbjct: 1024 LELFVSINRGLNKVFFYLELGGSAELRLEDSD 1055
>gnl|CDD|240388 PTZ00372, PTZ00372, endonuclease 4-like protein; Provisional.
Length = 413
Score = 55.9 bits (135), Expect = 2e-08
Identities = 33/105 (31%), Positives = 43/105 (40%), Gaps = 3/105 (2%)
Query: 75 KKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKK 134
+K K + N KE +EEE K K K K E KKK ++KKK
Sbjct: 17 QKSKLQPISYIYSNVLVLSKEILSTFSEEENKVATTSTKKDKKEDKNNESKKKSEKKKKK 76
Query: 135 KRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNE 179
KK++K + + + KK KK KKK K K E N
Sbjct: 77 ---KKEKKEPKSEGETKLGFKTPKKSKKTKKKPPKPKPNEDVDNA 118
Score = 50.5 bits (121), Expect = 8e-07
Identities = 22/91 (24%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNK-SRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTK 60
+EE K K K+++KN S+K+ E++K+ KK++K K++ +++ + K++K
Sbjct: 41 TFSEEENKVATTSTKKDKKEDKNNESKKKSEKKKKKKKEKKEPKSEGETKLGFKTPKKSK 100
Query: 61 KKEKNKNKNRKEEKKKKKKRRTKKKEKNKNK 91
K +K K + E + + + N
Sbjct: 101 KTKKKPPKPKPNEDVDNAFNKIAELAEKSNV 131
Score = 49.3 bits (118), Expect = 2e-06
Identities = 21/128 (16%), Positives = 41/128 (32%), Gaps = 5/128 (3%)
Query: 37 KKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEE 96
+ ++ + +EE K K K+++KN K++
Sbjct: 10 SFFSGTTQKSKLQPISYIYSNVLVLSKEILSTFSEEENKVATTSTKKDKKEDKNNESKKK 69
Query: 97 KKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEK 156
E+KKK K ++K + + K + KK K+ K K + +
Sbjct: 70 -----SEKKKKKKKEKKEPKSEGETKLGFKTPKKSKKTKKKPPKPKPNEDVDNAFNKIAE 124
Query: 157 KKKKKKKK 164
+K
Sbjct: 125 LAEKSNVY 132
Score = 48.2 bits (115), Expect = 5e-06
Identities = 28/117 (23%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
Query: 2 KNKKEEKKKKKKRRTK-KKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTK 60
+ K + ++ + +EE + T K+ K++KN K++ +KK+ K
Sbjct: 17 QKSKLQPISYIYSNVLVLSKEILSTFSEEENKVATTSTKKDKKEDKNNESKKKSEKKKKK 76
Query: 61 KKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNK 117
KKEK + K+ E K K KK +K K K K + ++ + K + N
Sbjct: 77 KKEKKEPKSEGETKLGFKT--PKKSKKTKKKPPKPKPNEDVDNAFNKIAELAEKSNV 131
Score = 47.0 bits (112), Expect = 9e-06
Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
Query: 25 KSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTK--KKEKNKNKNRKEEKKKKKKRRT 82
+ K + K + EEE K T KK+K ++KN + +KK +KK++
Sbjct: 17 QKSKLQPISYIYSNVLVLSKEILSTFSEEENKVATTSTKKDKKEDKNNESKKKSEKKKKK 76
Query: 83 KKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKK 139
KK++K KS E K +K K K+ K K ++ + + E +K
Sbjct: 77 KKEKKEP-KSEGETKLGFKTPKKSKKTKKKPPKPKPNEDVDNAFNKIAELAEKSNVY 132
Score = 44.3 bits (105), Expect = 8e-05
Identities = 28/125 (22%), Positives = 50/125 (40%), Gaps = 4/125 (3%)
Query: 3 NKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKK 62
+ +K K + + +E ++++ K K K+E+K +KKK
Sbjct: 10 SFFSGTTQKSKLQPISYIYSNVLVLSKEILSTFSEEENKVATTSTKKDKKEDKNNESKKK 69
Query: 63 EKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEE 122
+ K K +KE+K+ K + + K K+ K+ KK + + K K N E
Sbjct: 70 SEKKKKKKKEKKEPKS----EGETKLGFKTPKKSKKTKKKPPKPKPNEDVDNAFNKIAEL 125
Query: 123 EEKKK 127
EK
Sbjct: 126 AEKSN 130
Score = 42.8 bits (101), Expect = 3e-04
Identities = 21/83 (25%), Positives = 36/83 (43%)
Query: 101 AEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKK 160
++ K + + + +E EE K T K+ K E +++ +KKKK
Sbjct: 16 TQKSKLQPISYIYSNVLVLSKEILSTFSEEENKVATTSTKKDKKEDKNNESKKKSEKKKK 75
Query: 161 KKKKKKRTKKKEEEKRKNEKAVR 183
KKK+KK K + E K + +
Sbjct: 76 KKKEKKEPKSEGETKLGFKTPKK 98
Score = 42.4 bits (100), Expect = 3e-04
Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 3/89 (3%)
Query: 102 EEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNK---SRKEEEEEEKKK 158
+ + + N KE E E K + KK+K ++K S+K+ E+++KKK
Sbjct: 18 KSKLQPISYIYSNVLVLSKEILSTFSEEENKVATTSTKKDKKEDKNNESKKKSEKKKKKK 77
Query: 159 KKKKKKKKRTKKKEEEKRKNEKAVRLTKL 187
K+KK+ K + K K + K
Sbjct: 78 KEKKEPKSEGETKLGFKTPKKSKKTKKKP 106
Score = 41.2 bits (97), Expect = 7e-04
Identities = 21/88 (23%), Positives = 40/88 (45%)
Query: 94 KEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEE 153
++ K + K + EEE K KK K+ K ++K KS K++++
Sbjct: 17 QKSKLQPISYIYSNVLVLSKEILSTFSEEENKVATTSTKKDKKEDKNNESKKKSEKKKKK 76
Query: 154 EEKKKKKKKKKKKRTKKKEEEKRKNEKA 181
+++KK+ K + + + K +K K K
Sbjct: 77 KKEKKEPKSEGETKLGFKTPKKSKKTKK 104
Score = 33.9 bits (78), Expect = 0.14
Identities = 21/74 (28%), Positives = 31/74 (41%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKK 61
K K + KKK + KKK+K K + + E E + K +K+KK K K K + +
Sbjct: 59 KEDKNNESKKKSEKKKKKKKEKKEPKSEGETKLGFKTPKKSKKTKKKPPKPKPNEDVDNA 118
Query: 62 KEKNKNKNRKEEKK 75
K K
Sbjct: 119 FNKIAELAEKSNVY 132
>gnl|CDD|114011 pfam05262, Borrelia_P83, Borrelia P83/100 protein. This family
consists of several Borrelia P83/P100 antigen proteins.
Length = 489
Score = 55.8 bits (134), Expect = 2e-08
Identities = 42/164 (25%), Positives = 81/164 (49%), Gaps = 18/164 (10%)
Query: 9 KKKKKRRTKKKEKNKNKSR-----KEEEEEKRTKKKEKNKKNKNKSRKEEEK-KKRTKKK 62
KK + + EK N R KE E ++ K+ ++ K+ +K + + +K +++
Sbjct: 180 KKVVEALREDNEKGVNFRRDMTDLKERESQEDAKRAQQLKEELDKKQIDADKAQQKADFA 239
Query: 63 EKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEE 122
+ N +K R E ++K+++ K K + S +E K+ AE +K++ + K +
Sbjct: 240 QDNADKQRDEVRQKQQE--AKNLPKPADTSSPKEDKQVAENQKREIE----------KAQ 287
Query: 123 EEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKK 166
E KK EE K + K K +S+ E+E E K+ + +KK++
Sbjct: 288 IEIKKNDEEALKAKDHKAFDLKQESKASEKEAEDKELEAQKKRE 331
Score = 51.5 bits (123), Expect = 4e-07
Identities = 34/149 (22%), Positives = 74/149 (49%), Gaps = 8/149 (5%)
Query: 37 KKKEKNKKNKNKSR-----KEEEKKKRTKKKEKNKNK-NRKEEKKKKKKRRTKKKEKNKN 90
+E N+K N R KE E ++ K+ ++ K + ++K+ K +++ + N +
Sbjct: 185 ALREDNEKGVNFRRDMTDLKERESQEDAKRAQQLKEELDKKQIDADKAQQKADFAQDNAD 244
Query: 91 KSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKE 150
K R E ++K+ E + + + ++ E +K+E E K + KK ++ K+ K+
Sbjct: 245 KQRDEVRQKQQEAKNLPKPADTSSPKEDKQVAENQKREIE-KAQIEIKKNDEEALKA-KD 302
Query: 151 EEEEEKKKKKKKKKKKRTKKKEEEKRKNE 179
+ + K++ K +K+ K+ E ++K E
Sbjct: 303 HKAFDLKQESKASEKEAEDKELEAQKKRE 331
Score = 48.1 bits (114), Expect = 5e-06
Identities = 37/157 (23%), Positives = 75/157 (47%), Gaps = 11/157 (7%)
Query: 4 KKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKE 63
K+ E ++ KR + KE+ +K+ + +K +K + + N +K R E +K +++
Sbjct: 204 KERESQEDAKRAQQLKEELD---KKQIDADKAQQKADFAQDNADKQRDEVRQK---QQEA 257
Query: 64 KNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEE 123
KN K K+ K+ + +++ K++ E KK + E K K K +S+ E+
Sbjct: 258 KNLPKPADTSSPKEDKQVAENQKREIEKAQIEIKKNDEEALKAKDHKAFDLKQESKASEK 317
Query: 124 EKKKEAEEKKKKRTK-----KKEKNKNKSRKEEEEEE 155
E + + E +KKR +K K + +++ E+
Sbjct: 318 EAEDKELEAQKKREPVAEDLQKTKPQVEAQPTSLNED 354
Score = 44.6 bits (105), Expect = 6e-05
Identities = 31/144 (21%), Positives = 63/144 (43%), Gaps = 4/144 (2%)
Query: 5 KEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEK 64
KEE KK+ K ++K +++ ++K++ KN K K+ + E
Sbjct: 219 KEELDKKQIDADKAQQKADFAQDNADKQRDEVRQKQQEAKNLPKPADTSSPKEDKQVAEN 278
Query: 65 NKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKE-EE 123
K + K + + KK K K+ + + K+E++ +K+ ++KE K R+ E
Sbjct: 279 QKREIEKAQIEIKKNDEEALKAKD---HKAFDLKQESKASEKEAEDKELEAQKKREPVAE 335
Query: 124 EKKKEAEEKKKKRTKKKEKNKNKS 147
+ +K + + + T E + S
Sbjct: 336 DLQKTKPQVEAQPTSLNEDAIDSS 359
Score = 37.7 bits (87), Expect = 0.010
Identities = 22/122 (18%), Positives = 62/122 (50%), Gaps = 9/122 (7%)
Query: 78 KKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAE------E 131
R +K N + + K++E++E+ K+ + ++ +K + + ++ +++A+ +
Sbjct: 185 ALREDNEKGVNFRRDMTDLKERESQEDAKRAQQLKEELDKKQIDADKAQQKADFAQDNAD 244
Query: 132 KKKKRTKKKEKNKNKSRKEEEEEEKKKKKK---KKKKKRTKKKEEEKRKNEKAVRLTKLS 188
K++ ++K++ K + K+ K+ +K++ K + E K+ +E+A++
Sbjct: 245 KQRDEVRQKQQEAKNLPKPADTSSPKEDKQVAENQKREIEKAQIEIKKNDEEALKAKDHK 304
Query: 189 AF 190
AF
Sbjct: 305 AF 306
>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit;
Provisional.
Length = 482
Score = 54.2 bits (131), Expect = 6e-08
Identities = 36/86 (41%), Positives = 53/86 (61%), Gaps = 3/86 (3%)
Query: 52 EEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNK 111
EEE + T K+ K +K +K +KKR +KKEK K KKKE EEE++K K +
Sbjct: 396 EEEIEFLTGSKKA-TKKIKKIVEKAEKKREEEKKEKKKKA--FAGKKKEEEEEEEKEKKE 452
Query: 112 EKNKNKSRKEEEEKKKEAEEKKKKRT 137
E+ + + + EEEK++E E+KKK+ T
Sbjct: 453 EEKEEEEEEAEEEKEEEEEKKKKQAT 478
Score = 54.2 bits (131), Expect = 7e-08
Identities = 31/81 (38%), Positives = 52/81 (64%)
Query: 82 TKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKE 141
T+++ + S+K KK + EK + K +E+ K K +K KKKE EE+++K K++E
Sbjct: 395 TEEEIEFLTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEE 454
Query: 142 KNKNKSRKEEEEEEKKKKKKK 162
K + + EEE+EE+++KKKK
Sbjct: 455 KEEEEEEAEEEKEEEEEKKKK 475
Score = 53.8 bits (130), Expect = 7e-08
Identities = 24/74 (32%), Positives = 48/74 (64%)
Query: 69 NRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKE 128
K+ KK KK K ++K + + ++++KK A ++K++ + +EK K + KEEEE++ E
Sbjct: 404 GSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAE 463
Query: 129 AEEKKKKRTKKKEK 142
E+++++ KKK+
Sbjct: 464 EEKEEEEEKKKKQA 477
Score = 50.3 bits (121), Expect = 9e-07
Identities = 27/79 (34%), Positives = 53/79 (67%)
Query: 102 EEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKK 161
EEE + +K K +K E+ +K+ EE+KK++ KK K K +EEEE+EKK+++K
Sbjct: 396 EEEIEFLTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEK 455
Query: 162 KKKKKRTKKKEEEKRKNEK 180
+++++ ++++EE+ + +K
Sbjct: 456 EEEEEEAEEEKEEEEEKKK 474
Score = 49.5 bits (119), Expect = 2e-06
Identities = 25/78 (32%), Positives = 51/78 (65%)
Query: 95 EEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEE 154
EE+ + KK TK +K K+ K+ EE+KKE ++K KK+E+ + + K+EEE+
Sbjct: 396 EEEIEFLTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEK 455
Query: 155 EKKKKKKKKKKKRTKKKE 172
E+++++ +++K+ ++K+
Sbjct: 456 EEEEEEAEEEKEEEEEKK 473
Score = 49.1 bits (118), Expect = 3e-06
Identities = 25/80 (31%), Positives = 50/80 (62%)
Query: 28 KEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEK 87
+EE E KK K K + E+++++ K+K+K +K+E+++++++ K++EK
Sbjct: 396 EEEIEFLTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEK 455
Query: 88 NKNKSRKEEKKKEAEEEKKK 107
+ + EE+K+E EE+KKK
Sbjct: 456 EEEEEEAEEEKEEEEEKKKK 475
Score = 48.4 bits (116), Expect = 5e-06
Identities = 32/86 (37%), Positives = 51/86 (59%), Gaps = 6/86 (6%)
Query: 29 EEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKN 88
EEE E T K+ K K E+ +KKR ++K++ K K+ KKK +++EK
Sbjct: 396 EEEIEFLTGSKKA--TKKIKKIVEKAEKKREEEKKEKK----KKAFAGKKKEEEEEEEKE 449
Query: 89 KNKSRKEEKKKEAEEEKKKTKNKEKN 114
K + KEE+++EAEEEK++ + K+K
Sbjct: 450 KKEEEKEEEEEEAEEEKEEEEEKKKK 475
Score = 48.0 bits (115), Expect = 5e-06
Identities = 31/88 (35%), Positives = 51/88 (57%), Gaps = 14/88 (15%)
Query: 81 RTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKK 140
K +K K K EKK+E E+++KK K K + +EEE++KKE E++++
Sbjct: 405 SKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEE------ 458
Query: 141 EKNKNKSRKEEEEEEKKKKKKKKKKKRT 168
+EE EEEK+++++KKKK+ T
Sbjct: 459 --------EEEAEEEKEEEEEKKKKQAT 478
Score = 48.0 bits (115), Expect = 6e-06
Identities = 27/81 (33%), Positives = 52/81 (64%)
Query: 100 EAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKK 159
EE + T +K+ K + E+ +KK EEKK+K+ K K + +EEE+E+K+++
Sbjct: 395 TEEEIEFLTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEE 454
Query: 160 KKKKKKKRTKKKEEEKRKNEK 180
K++++++ ++KEEE+ K +K
Sbjct: 455 KEEEEEEAEEEKEEEEEKKKK 475
Score = 46.8 bits (112), Expect = 1e-05
Identities = 23/82 (28%), Positives = 53/82 (64%)
Query: 94 KEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEE 153
+EE + +K K K+ + +K EEEKK++ ++ + K++E+ + K +KEEE+
Sbjct: 396 EEEIEFLTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEK 455
Query: 154 EEKKKKKKKKKKKRTKKKEEEK 175
EE++++ +++K++ +KK+++
Sbjct: 456 EEEEEEAEEEKEEEEEKKKKQA 477
Score = 46.8 bits (112), Expect = 1e-05
Identities = 23/74 (31%), Positives = 46/74 (62%)
Query: 74 KKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKK 133
KK K+ K EK + K +E+K+K+ + K K +E+ + K +KEEE++++E E ++
Sbjct: 405 SKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEE 464
Query: 134 KKRTKKKEKNKNKS 147
+K ++++K K +
Sbjct: 465 EKEEEEEKKKKQAT 478
Score = 46.8 bits (112), Expect = 1e-05
Identities = 23/75 (30%), Positives = 47/75 (62%)
Query: 8 KKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKN 67
KK ++ KK + K R+EE++EK+ K KK + + ++E+K++ +++E+
Sbjct: 404 GSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAE 463
Query: 68 KNRKEEKKKKKKRRT 82
+ ++EE++KKKK+ T
Sbjct: 464 EEKEEEEEKKKKQAT 478
Score = 45.7 bits (109), Expect = 3e-05
Identities = 27/77 (35%), Positives = 47/77 (61%), Gaps = 3/77 (3%)
Query: 11 KKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNR 70
K+ TKK +K K+ K+ EEEK+ KKK+ K + +EEEK+K K+E+ + +
Sbjct: 404 GSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEK---KEEEKEEEEE 460
Query: 71 KEEKKKKKKRRTKKKEK 87
+ E++K+++ KKK+
Sbjct: 461 EAEEEKEEEEEKKKKQA 477
Score = 44.9 bits (107), Expect = 5e-05
Identities = 21/62 (33%), Positives = 43/62 (69%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKK 61
K ++ +KK+++ + +KK+K +KEEEEE+ +KKE+ K+ + + +EE++++ KK
Sbjct: 414 KIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKK 473
Query: 62 KE 63
K+
Sbjct: 474 KK 475
Score = 44.5 bits (106), Expect = 7e-05
Identities = 23/67 (34%), Positives = 42/67 (62%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKK 61
K KK +K +KKR +KKEK K +++EE+ ++KEK ++ K + +E E++K ++
Sbjct: 411 KIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEE 470
Query: 62 KEKNKNK 68
++K K
Sbjct: 471 EKKKKQA 477
Score = 42.2 bits (100), Expect = 3e-04
Identities = 16/67 (23%), Positives = 41/67 (61%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKK 61
K ++ +K +++ ++++K K K ++++ +++EK KK + K +EEE ++ ++
Sbjct: 409 TKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEE 468
Query: 62 KEKNKNK 68
+E+ K K
Sbjct: 469 EEEKKKK 475
Score = 41.8 bits (99), Expect = 5e-04
Identities = 20/75 (26%), Positives = 45/75 (60%)
Query: 27 RKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKE 86
++ K+ KK + + K + K+E+KKK K+K + + ++EKK+++K +++
Sbjct: 403 TGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEA 462
Query: 87 KNKNKSRKEEKKKEA 101
+ + + +E+KKK+A
Sbjct: 463 EEEKEEEEEKKKKQA 477
Score = 41.1 bits (97), Expect = 8e-04
Identities = 20/75 (26%), Positives = 45/75 (60%), Gaps = 6/75 (8%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKK 61
K K+ KK +K K++E+ K+E+++K K+K ++ + + K+EE+K+ ++
Sbjct: 407 KATKKIKKIVEKAEKKREEE------KKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEE 460
Query: 62 KEKNKNKNRKEEKKK 76
+ + + + +E+KKK
Sbjct: 461 EAEEEKEEEEEKKKK 475
Score = 31.4 bits (72), Expect = 0.89
Identities = 17/48 (35%), Positives = 29/48 (60%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKS 49
K K KKK++ ++KEK + + +EEEE + K++E+ KK K +
Sbjct: 431 KKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKKKKQAT 478
>gnl|CDD|220271 pfam09507, CDC27, DNA polymerase subunit Cdc27. This protein forms
the C subunit of DNA polymerase delta. It carries the
essential residues for binding to the Pol1 subunit of
polymerase alpha, from residues 293-332, which are
characterized by the motif D--G--VT, referred to as the
DPIM motif. The first 160 residues of the protein form
the minimal domain for binding to the B subunit, Cdc1,
of polymerase delta, the final 10 C-terminal residues,
362-372, being the DNA sliding clamp, PCNA, binding
motif.
Length = 427
Score = 52.5 bits (126), Expect = 2e-07
Identities = 43/193 (22%), Positives = 81/193 (41%), Gaps = 20/193 (10%)
Query: 1 CKNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTK 60
K KK + + EK + K+ + KR K+ N + +K +EKK++ +
Sbjct: 175 EVKVKSAKKTQDTSKETTTEKTEGKTSVKAASLKRNPPKKSNIMSSFFKKKTKEKKEKKE 234
Query: 61 KKEKNKNKNRKEEKKKKKK-----------RRTKKKEKNKNKSRKEEKKKEAEEEKKKTK 109
E + +EE K+ + E S + +E EEK+K K
Sbjct: 235 ASESTVKEESEEESGKRDVILEDESAEPTGLDEDEDEDEPKPSGERSDSEEETEEKEKEK 294
Query: 110 NKEKNKNKSRKEEEEKKKEAEEKKKKRTK-KKEKNKNKSRKEEEEEE--------KKKKK 160
K K ++E+E+ + E + + ++ + +KEEE+EE +++ +
Sbjct: 295 RKRLKKMMEDEDEDEEMEIVPESPVEEEESEEPEPPPLPKKEEEKEEVTVSPDGGRRRGR 354
Query: 161 KKKKKKRTKKKEE 173
++ KK+T K EE
Sbjct: 355 RRVMKKKTFKDEE 367
Score = 49.8 bits (119), Expect = 1e-06
Identities = 33/169 (19%), Positives = 69/169 (40%), Gaps = 5/169 (2%)
Query: 15 RTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEK 74
+ + N R + K E K KS K+ + + EK + K +
Sbjct: 150 ASPALKPTANGKRPSSKPPKSIMSPEV----KVKSAKKTQDTSKETTTEKTEGKTSVKAA 205
Query: 75 KKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNK-NKSRKEEEEKKKEAEEKK 133
K+ K + +K ++KKE +E + T +E + + R E +
Sbjct: 206 SLKRNPPKKSNIMSSFFKKKTKEKKEKKEASESTVKEESEEESGKRDVILEDESAEPTGL 265
Query: 134 KKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKAV 182
+ + E + R + EEE ++K+K+K+K+ + ++E++ + + V
Sbjct: 266 DEDEDEDEPKPSGERSDSEEETEEKEKEKRKRLKKMMEDEDEDEEMEIV 314
Score = 44.8 bits (106), Expect = 5e-05
Identities = 41/201 (20%), Positives = 87/201 (43%), Gaps = 22/201 (10%)
Query: 6 EEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKN 65
+KK K+K+ K+ ++ K EEE KR E ++E++ + E++
Sbjct: 222 FKKKTKEKKEKKEASESTVKEESEEESGKRDVILEDESAEPTGLDEDEDEDEPKPSGERS 281
Query: 66 KNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEK 125
++ EEK+K+K++R KK +++++ + E E+ E+++++ + + +KEEE++
Sbjct: 282 DSEEETEEKEKEKRKRLKKMMEDEDEDEEMEIVPESPVEEEESE-EPEPPPLPKKEEEKE 340
Query: 126 KKEAEEKKKKRTKKKEKNKNKSRKEEE---------------------EEEKKKKKKKKK 164
+ +R ++ K K+ K+EE K K K
Sbjct: 341 EVTVSPDGGRRRGRRRVMKKKTFKDEEGYLVTKKVYEWESFSEDEAEPPPTKPKPKVSTP 400
Query: 165 KKRTKKKEEEKRKNEKAVRLT 185
K+ + K +K +
Sbjct: 401 AVPAAAKKPKAPKKKKQSSIM 421
Score = 42.5 bits (100), Expect = 3e-04
Identities = 25/156 (16%), Positives = 73/156 (46%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKK 61
++ K ++ + K KS K+ ++ + EK + + ++ K
Sbjct: 156 PTANGKRPSSKPPKSIMSPEVKVKSAKKTQDTSKETTTEKTEGKTSVKAASLKRNPPKKS 215
Query: 62 KEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKE 121
+ +K ++KK+KK ++ K +++ ++ E+E + ++++++ +
Sbjct: 216 NIMSSFFKKKTKEKKEKKEASESTVKEESEEESGKRDVILEDESAEPTGLDEDEDEDEPK 275
Query: 122 EEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKK 157
++ ++EE+ +++ K+K K K ++E+E+E+
Sbjct: 276 PSGERSDSEEETEEKEKEKRKRLKKMMEDEDEDEEM 311
Score = 41.7 bits (98), Expect = 5e-04
Identities = 34/157 (21%), Positives = 64/157 (40%), Gaps = 4/157 (2%)
Query: 30 EEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNK 89
K K+ +K K + K K KE +K + +T K +
Sbjct: 148 PAASPALKPTANGKRPSSKPPKSIMSPEVKVKSAKKTQDTSKETTTEKTEGKTSVKAASL 207
Query: 90 NKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNK-NKSR 148
++ ++ + KKKTK K K K E K+E+EE+ KR E +
Sbjct: 208 KRNPPKKSNIMSSFFKKKTKEK---KEKKEASESTVKEESEEESGKRDVILEDESAEPTG 264
Query: 149 KEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKAVRLT 185
+E+E+E + K ++ ++ EE++++ K ++
Sbjct: 265 LDEDEDEDEPKPSGERSDSEEETEEKEKEKRKRLKKM 301
Score = 35.6 bits (82), Expect = 0.037
Identities = 19/143 (13%), Positives = 50/143 (34%)
Query: 38 KKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEK 97
E K+ + +++ + + KR + K K+ + K
Sbjct: 120 SLEYGKQAGPITNPNVKRRTGVGLPPVAPAASPALKPTANGKRPSSKPPKSIMSPEVKVK 179
Query: 98 KKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKK 157
+ ++ K EK + K+ + K+ +K + +K + ++++E E
Sbjct: 180 SAKKTQDTSKETTTEKTEGKTSVKAASLKRNPPKKSNIMSSFFKKKTKEKKEKKEASEST 239
Query: 158 KKKKKKKKKRTKKKEEEKRKNEK 180
K++ +++ + E E
Sbjct: 240 VKEESEEESGKRDVILEDESAEP 262
Score = 34.8 bits (80), Expect = 0.080
Identities = 31/132 (23%), Positives = 65/132 (49%), Gaps = 5/132 (3%)
Query: 5 KEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEK 64
EEK+K+K++R KK +++++ + E + ++E++++ + ++E++K
Sbjct: 287 TEEKEKEKRKRLKKMMEDEDEDEEMEIVPESPVEEEESEEPEPPPLPKKEEEKEEVTVSP 346
Query: 65 NKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKK---EAEEEKKKTKNKEKNKNKSRKE 121
+ + R + KKK T K E+ ++K + + E E E TK K K +
Sbjct: 347 DGGRRRGRRRVMKKK--TFKDEEGYLVTKKVYEWESFSEDEAEPPPTKPKPKVSTPAVPA 404
Query: 122 EEEKKKEAEEKK 133
+K K ++KK
Sbjct: 405 AAKKPKAPKKKK 416
Score = 34.4 bits (79), Expect = 0.11
Identities = 26/151 (17%), Positives = 62/151 (41%), Gaps = 5/151 (3%)
Query: 4 KKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKE 63
++E + + K ++ + + KE+E+ KR KK +++ + E ++ E
Sbjct: 266 DEDEDEDEPKPSGERSDSEEETEEKEKEKRKRLKKMMEDEDEDEEMEIVPESPVEEEESE 325
Query: 64 KNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEE 123
+ + +++++K++ + R+ KKK ++E+ K+ + +S E+E
Sbjct: 326 EPEPPPLPKKEEEKEEVTVSPDGGRRRGRRRVMKKKTFKDEEGYLVTKKVYEWESFSEDE 385
Query: 124 E-----KKKEAEEKKKKRTKKKEKNKNKSRK 149
K K K+ K +K
Sbjct: 386 AEPPPTKPKPKVSTPAVPAAAKKPKAPKKKK 416
>gnl|CDD|224212 COG1293, COG1293, Predicted RNA-binding protein homologous to
eukaryotic snRNP [Transcription].
Length = 564
Score = 52.0 bits (125), Expect = 3e-07
Identities = 34/171 (19%), Positives = 69/171 (40%), Gaps = 6/171 (3%)
Query: 4 KKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEE--EKKKRTKK 61
++++ K+ KK EK K + E+++ ++ + + + + E + ++
Sbjct: 276 ERDKIKQLASELEKKLEKELKKLENKLEKQEDELEELEKAAEELRQKGELLYANLQLIEE 335
Query: 62 KEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKE 121
K+ ++ K K K ++N R +K K+ + K + KE
Sbjct: 336 GLKSVRLADFYGNEEIKIELDKSKTPSENAQRYFKKYKKLKGAKVNLDRQLSEL----KE 391
Query: 122 EEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKE 172
+ A+ +K KK + + EE K KKKK+KKK+ +K
Sbjct: 392 AIAYYESAKTALEKAEGKKAIEEIREELIEEGLLKSKKKKRKKKEWFEKFR 442
Score = 48.2 bits (115), Expect = 5e-06
Identities = 38/171 (22%), Positives = 72/171 (42%), Gaps = 6/171 (3%)
Query: 10 KKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKN 69
+K +R K+ ++ + + E+E +K K EK + + K E+ ++ K + N
Sbjct: 273 EKFERDKIKQLASELEKKLEKELKKLENKLEKQEDELEELEKAAEELRQ---KGELLYAN 329
Query: 70 RKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEA 129
+ ++ K R N+ + +K K E ++ K K ++ + + E
Sbjct: 330 LQLIEEGLKSVRLADFYGNEEIKIELDKSKTPSENAQRYFKKYKKLKGAKVNLDRQLSEL 389
Query: 130 EEKKKKRTKKK---EKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRK 177
+E K EK + K EE EE ++ K KK+ +KK+E K
Sbjct: 390 KEAIAYYESAKTALEKAEGKKAIEEIREELIEEGLLKSKKKKRKKKEWFEK 440
Score = 48.2 bits (115), Expect = 5e-06
Identities = 36/163 (22%), Positives = 64/163 (39%), Gaps = 15/163 (9%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKN---------------KKNK 46
K+ + +K+ K+ +K +NK K+E+E + +K + ++
Sbjct: 278 DKIKQLASELEKKLEKELKKLENKLEKQEDELEELEKAAEELRQKGELLYANLQLIEEGL 337
Query: 47 NKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKK 106
R + K E +K+K E ++ K+ K K N R+ + KEA +
Sbjct: 338 KSVRLADFYGNEEIKIELDKSKTPSENAQRYFKKYKKLKGAKVNLDRQLSELKEAIAYYE 397
Query: 107 KTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRK 149
K + + EE +++ EE K KKK K K K
Sbjct: 398 SAKTALEKAEGKKAIEEIREELIEEGLLKSKKKKRKKKEWFEK 440
Score = 38.5 bits (90), Expect = 0.005
Identities = 29/165 (17%), Positives = 63/165 (38%), Gaps = 21/165 (12%)
Query: 37 KKKEKNKKNKNKSRKEEEKKKRTKKK-EKNKNKNRKEEKKKKKKR--------------- 80
++ + + +K E++ K+ + K EK +++ + EK ++ R
Sbjct: 276 ERDKIKQLASELEKKLEKELKKLENKLEKQEDELEELEKAAEELRQKGELLYANLQLIEE 335
Query: 81 -----RTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKK 135
R N+ + +K K E ++ K K ++ + + E +E
Sbjct: 336 GLKSVRLADFYGNEEIKIELDKSKTPSENAQRYFKKYKKLKGAKVNLDRQLSELKEAIAY 395
Query: 136 RTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEK 180
K + K+ EE +++ ++ K KKK ++K EK
Sbjct: 396 YESAKTALEKAEGKKAIEEIREELIEEGLLKSKKKKRKKKEWFEK 440
Score = 35.1 bits (81), Expect = 0.063
Identities = 28/122 (22%), Positives = 52/122 (42%), Gaps = 1/122 (0%)
Query: 61 KKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKK-EAEEEKKKTKNKEKNKNKSR 119
+K + + + +KK + KK +NK + +++E ++ E E+ + K + N
Sbjct: 273 EKFERDKIKQLASELEKKLEKELKKLENKLEKQEDELEELEKAAEELRQKGELLYANLQL 332
Query: 120 KEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNE 179
EE K + K E +K+K+ E + KK KK K K ++ + K
Sbjct: 333 IEEGLKSVRLADFYGNEEIKIELDKSKTPSENAQRYFKKYKKLKGAKVNLDRQLSELKEA 392
Query: 180 KA 181
A
Sbjct: 393 IA 394
Score = 33.9 bits (78), Expect = 0.17
Identities = 17/80 (21%), Positives = 36/80 (45%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKK 61
+N + KK KK + K ++ S +E K +K + K EE +++ ++
Sbjct: 363 ENAQRYFKKYKKLKGAKVNLDRQLSELKEAIAYYESAKTALEKAEGKKAIEEIREELIEE 422
Query: 62 KEKNKNKNRKEEKKKKKKRR 81
K ++++K+ +K R
Sbjct: 423 GLLKSKKKKRKKKEWFEKFR 442
Score = 28.5 bits (64), Expect = 7.2
Identities = 23/95 (24%), Positives = 44/95 (46%)
Query: 92 SRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEE 151
R + K+ +E EKK K +K +NK K+E+E ++ + ++ R K + N EE
Sbjct: 276 ERDKIKQLASELEKKLEKELKKLENKLEKQEDELEELEKAAEELRQKGELLYANLQLIEE 335
Query: 152 EEEEKKKKKKKKKKKRTKKKEEEKRKNEKAVRLTK 186
+ + ++ + ++ K +E A R K
Sbjct: 336 GLKSVRLADFYGNEEIKIELDKSKTPSENAQRYFK 370
>gnl|CDD|218177 pfam04615, Utp14, Utp14 protein. This protein is found to be part
of a large ribonucleoprotein complex containing the U3
snoRNA. Depletion of the Utp proteins impedes production
of the 18S rRNA, indicating that they are part of the
active pre-rRNA processing complex. This large RNP
complex has been termed the small subunit (SSU)
processome.
Length = 728
Score = 51.2 bits (123), Expect = 7e-07
Identities = 40/169 (23%), Positives = 81/169 (47%), Gaps = 8/169 (4%)
Query: 18 KKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKK 77
++ + + K + E E+ ++ E +++ + +E KK ++K +N ++ E KK
Sbjct: 380 QRAEARKKEENDAEIEELRRELEGEEESDEEENEEPSKKNVGRRKFGPENGEKEAESKKL 439
Query: 78 KKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEE------ 131
KK + ++ K +EE + E E + +K NK +++ ++EEE+++ EE
Sbjct: 440 KKENKNEFKEKKESDEEEELEDEEEAKVEKVANKLLKRSEKAQKEEEEEELDEENPWLKT 499
Query: 132 --KKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKN 178
K KK++ K S K ++ K K K KK+ KK++ +
Sbjct: 500 TSSVGKSAKKQDSKKKSSSKLDKAANKISKAAVKVKKKKKKEKSIDLDD 548
Score = 50.8 bits (122), Expect = 8e-07
Identities = 38/184 (20%), Positives = 86/184 (46%)
Query: 3 NKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKK 62
+ E +K+ K KE ++ K ++ E KK +N + EE +++ ++
Sbjct: 346 DDGENPWMLRKKLGKLKEGEDDEENSGLLSMKFMQRAEARKKEENDAEIEELRRELEGEE 405
Query: 63 EKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEE 122
E ++ +N + KK +R+ + K K+ KK+ E K+K ++ E+ + + +E
Sbjct: 406 ESDEEENEEPSKKNVGRRKFGPENGEKEAESKKLKKENKNEFKEKKESDEEEELEDEEEA 465
Query: 123 EEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKAV 182
+ +K + K+ +KE+ + + +E + K KK+ KK+ + ++ A
Sbjct: 466 KVEKVANKLLKRSEKAQKEEEEEELDEENPWLKTTSSVGKSAKKQDSKKKSSSKLDKAAN 525
Query: 183 RLTK 186
+++K
Sbjct: 526 KISK 529
Score = 47.0 bits (112), Expect = 1e-05
Identities = 33/139 (23%), Positives = 66/139 (47%)
Query: 17 KKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKK 76
KK + + E+E +KK +K KN+ K +KE ++++ + +E+ K + + K
Sbjct: 417 KKNVGRRKFGPENGEKEAESKKLKKENKNEFKEKKESDEEEELEDEEEAKVEKVANKLLK 476
Query: 77 KKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKR 136
+ ++ K++E+ + K + K K K K+ S+ ++ K K K+
Sbjct: 477 RSEKAQKEEEEEELDEENPWLKTTSSVGKSAKKQDSKKKSSSKLDKAANKISKAAVKVKK 536
Query: 137 TKKKEKNKNKSRKEEEEEE 155
KKKEK+ + +EE+
Sbjct: 537 KKKKEKSIDLDDDLIDEED 555
Score = 46.6 bits (111), Expect = 2e-05
Identities = 40/181 (22%), Positives = 77/181 (42%), Gaps = 17/181 (9%)
Query: 6 EEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKN 65
E +KK++ ++ + + + +E +EE+ + +KN + + EK+ +KK +K
Sbjct: 383 EARKKEENDAEIEELRRELEGEEESDEEENEEPSKKNVGRRKFGPENGEKEAESKKLKKE 442
Query: 66 KNKNRKEEKKK-------KKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKS 118
KE+K+ ++ +K NK R E+ +KE EEE+ +N S
Sbjct: 443 NKNEFKEKKESDEEEELEDEEEAKVEKVANKLLKRSEKAQKEEEEEELDEENPWLKTTSS 502
Query: 119 RKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKN 178
+ KK+ KK+ + + + + K KKKKKK ++ +
Sbjct: 503 VG----------KSAKKQDSKKKSSSKLDKAANKISKAAVKVKKKKKKEKSIDLDDDLID 552
Query: 179 E 179
E
Sbjct: 553 E 553
Score = 42.0 bits (99), Expect = 5e-04
Identities = 43/181 (23%), Positives = 91/181 (50%), Gaps = 5/181 (2%)
Query: 4 KKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKE 63
++ E+ ++K E+++++ EEE++ + + + +N RK+ K K + E
Sbjct: 309 RQGEELRRKIEGKSVSEEDEDEDSDSEEEDEDDDEDDDDGENPWMLRKKLGKLKEGEDDE 368
Query: 64 KNKN----KNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSR 119
+N K + + +KK+ + E+ + + EE+ E E E+ KN + K
Sbjct: 369 ENSGLLSMKFMQRAEARKKEENDAEIEELRRELEGEEESDEEENEEPSKKNVGRRKFGPE 428
Query: 120 KEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKK-KKKKKKKKKRTKKKEEEKRKN 178
E+E + + +K+ K K++K ++ + E+EEE K +K K KR++K ++E+ +
Sbjct: 429 NGEKEAESKKLKKENKNEFKEKKESDEEEELEDEEEAKVEKVANKLLKRSEKAQKEEEEE 488
Query: 179 E 179
E
Sbjct: 489 E 489
Score = 37.7 bits (88), Expect = 0.012
Identities = 44/218 (20%), Positives = 86/218 (39%), Gaps = 39/218 (17%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEE------- 54
++KK +K+ K + + KK+ + + EEE + + K+++ ++EEE
Sbjct: 435 ESKKLKKENKNEFKEKKESDEEEELEDEEEAKVEKVANKLLKRSEKAQKEEEEEELDEEN 494
Query: 55 ----KKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKN 110
K K ++ +K K K K K K +K+++K ++ +
Sbjct: 495 PWLKTTSSVGKSAKKQDSKKKSSSKLDKAANKISKAAVKVKKKKKKEKSIDLDDDLIDEE 554
Query: 111 KEKNKNKSRKEEEEKKKEAEEKKKKRTKKK---------EKNKNKSRKEEEEEEK----- 156
+ +E+E+ ++ K+K K+ E K K EEE+ K
Sbjct: 555 DSIKLDVDDEEDEDDEELPFLFKQKDLIKEAFAGDDVVAEFEKEKKEVIEEEDPKEIDLT 614
Query: 157 --------------KKKKKKKKKKRTKKKEEEKRKNEK 180
+KKK+K+K++ K E K++ K
Sbjct: 615 LPGWGSWAGDGIKKRKKKRKRKRRFLTKIEGVKKEKRK 652
Score = 30.4 bits (69), Expect = 1.8
Identities = 43/184 (23%), Positives = 80/184 (43%), Gaps = 5/184 (2%)
Query: 8 KKKKKKRRTKK-----KEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKK 62
K K R K K + + EE K K + S EEE + +
Sbjct: 286 KSMLKTGRAKYDEEARKALEEQLRQGEELRRKIEGKSVSEEDEDEDSDSEEEDEDDDEDD 345
Query: 63 EKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEE 122
+ +N +K K K +E + S K ++ EA ++++ E+ + + EE
Sbjct: 346 DDGENPWMLRKKLGKLKEGEDDEENSGLLSMKFMQRAEARKKEENDAEIEELRRELEGEE 405
Query: 123 EEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKAV 182
E ++E EE KK +++ KE E ++ KK+ K + K++ + EEE+ ++E+
Sbjct: 406 ESDEEENEEPSKKNVGRRKFGPENGEKEAESKKLKKENKNEFKEKKESDEEEELEDEEEA 465
Query: 183 RLTK 186
++ K
Sbjct: 466 KVEK 469
>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor
protein; Reviewed.
Length = 782
Score = 50.6 bits (122), Expect = 1e-06
Identities = 34/135 (25%), Positives = 66/135 (48%), Gaps = 11/135 (8%)
Query: 32 EEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNK 91
EE + ++K ++ + KE EK K +++K K + +++ ++ ++ ++ K
Sbjct: 526 EELERELEQKAEEAEAL-LKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIK---- 580
Query: 92 SRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEE--EKKKEAEEKKKKRTKKKEKNKNKSRK 149
E KKEA+E K+ + +K S K E E +K + +K+ KKK+K K K +
Sbjct: 581 ----EAKKEADEIIKELRQLQKGGYASVKAHELIEARKRLNKANEKKEKKKKKQKEKQEE 636
Query: 150 EEEEEEKKKKKKKKK 164
+ +E K +K
Sbjct: 637 LKVGDEVKYLSLGQK 651
Score = 44.8 bits (107), Expect = 7e-05
Identities = 38/181 (20%), Positives = 79/181 (43%), Gaps = 20/181 (11%)
Query: 15 RTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEK 74
+ ++K + +E EK K++ + KK K + +++ ++ K+ ++ + +KE
Sbjct: 529 ERELEQKAEEAEALLKEAEK-LKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEAD 587
Query: 75 KKKKKRRTKKKEKNKNKSRKE--EKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEK 132
+ K+ R +K + E E +K + +K + K+K + KE++E+ K +E
Sbjct: 588 EIIKELRQLQKGGYASVKAHELIEARKRLNKANEKKEKKKKKQ----KEKQEELKVGDEV 643
Query: 133 KKKRTKKK----EKNKNK---------SRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNE 179
K +K +K K + +K +K KKKKK+ K + K +
Sbjct: 644 KYLSLGQKGEVLSIPDDKEAIVQAGIMKMKVPLSDLEKIQKPKKKKKKKPKTVKPKPRTV 703
Query: 180 K 180
Sbjct: 704 S 704
Score = 43.3 bits (103), Expect = 2e-04
Identities = 41/185 (22%), Positives = 79/185 (42%), Gaps = 31/185 (16%)
Query: 5 KEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEK 64
E + ++K + K K ++E EE KK K + +++ ++ K+ ++
Sbjct: 528 LERELEQKAEEAEALLKEAEKLKEELEE----------KKEKLQEEEDKLLEEAEKEAQQ 577
Query: 65 NKNKNRKEEKKKKKKRRTKKKEK---NKNKSRKEEKKK--EAEEEKKKTKNKEKNKNKSR 119
+ +KE + K+ R +K K E +K+ +A E+K+K K K+K K +
Sbjct: 578 AIKEAKKEADEIIKELRQLQKGGYASVKAHELIEARKRLNKANEKKEKKKKKQKEKQEEL 637
Query: 120 KEEEE-------KKKEAEEKKKKRT--------KKKEKNKN-KSRKEEEEEEKKKKKKKK 163
K +E +K E + K K + + ++ ++++KKK K K
Sbjct: 638 KVGDEVKYLSLGQKGEVLSIPDDKEAIVQAGIMKMKVPLSDLEKIQKPKKKKKKKPKTVK 697
Query: 164 KKKRT 168
K RT
Sbjct: 698 PKPRT 702
Score = 39.4 bits (93), Expect = 0.003
Identities = 36/150 (24%), Positives = 71/150 (47%), Gaps = 15/150 (10%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEE--KRTKKKEKNKKNKNKSRKEEEKKKRT 59
K K +E++ K +K+ + K K+E +E K ++ +K K+ + E +KR
Sbjct: 557 KEKLQEEEDKLLEEAEKEAQQAIKEAKKEADEIIKELRQLQKGGYASVKAHELIEARKRL 616
Query: 60 KKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKN----- 114
K N+ ++++KKK+K+++ + K ++ K +K E +KE
Sbjct: 617 NKA----NEKKEKKKKKQKEKQEELKVGDEVKYLSLGQKGEVLS---IPDDKEAIVQAGI 669
Query: 115 -KNKSRKEEEEKKKEAEEKKKKRTKKKEKN 143
K K + EK ++ ++KKKK+ K +
Sbjct: 670 MKMKVPLSDLEKIQKPKKKKKKKPKTVKPK 699
Score = 37.1 bits (87), Expect = 0.017
Identities = 27/90 (30%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 95 EEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRK-EEEE 153
EE KK E+K+K + + +E E+K +EAE K+ K KE+ + K K +EEE
Sbjct: 505 EEAKKLIGEDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEE 564
Query: 154 EEKKKKKKKKKKKRTKKKEEEKRKNEKAVR 183
++ ++ +K+ ++ K+ ++E + K +R
Sbjct: 565 DKLLEEAEKEAQQAIKEAKKEADEIIKELR 594
>gnl|CDD|235334 PRK05035, PRK05035, electron transport complex protein RnfC;
Provisional.
Length = 695
Score = 50.3 bits (121), Expect = 1e-06
Identities = 34/197 (17%), Positives = 69/197 (35%), Gaps = 23/197 (11%)
Query: 2 KNKKEEKKKKKKRRTKKKEKN-------KNKSRKEEEEEKRTKKKEKNKKNKN-KSRKEE 53
K +E + KK K+K+ + K++K + K N + +E
Sbjct: 466 KAAREARHKKAAEARAAKDKDAVAAALARVKAKKAAATQPIVIKAGARPDNSAVIAAREA 525
Query: 54 EKKKRTKKKEKNKNKNRKEEKKKK--------KKRRTKKKEKNKNKSRKEEKKK---EAE 102
K + ++ + + + KK K ++ ++ N + + KK A
Sbjct: 526 RKAQARARQAEKQAAAAADPKKAAVAAAIARAKAKKAAQQAANAEAEEEVDPKKAAVAAA 585
Query: 103 EEKKKTKNKEKNKNKSRKEEEE----KKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKK 158
+ K K + + EE+ KK A R K K+ + + + EE + +K
Sbjct: 586 IARAKAKKAAQQAASAEPEEQVAEVDPKKAAVAAAIARAKAKKAEQQANAEPEEPVDPRK 645
Query: 159 KKKKKKKKRTKKKEEEK 175
R K ++ +
Sbjct: 646 AAVAAAIARAKARKAAQ 662
Score = 44.2 bits (105), Expect = 1e-04
Identities = 35/166 (21%), Positives = 62/166 (37%), Gaps = 29/166 (17%)
Query: 33 EKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNK- 91
E R ++EK K + K+R E + + ++K +E + KK K+K+
Sbjct: 437 EIRAIEQEKKKAEEAKARFEARQARLEREKAA------REARHKKAAEARAAKDKDAVAA 490
Query: 92 --SRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKK-----------KK--- 135
+R + KK A + + + E +K +A ++ KK
Sbjct: 491 ALARVKAKKAAATQPIVIKAGARPDNSAVIAAREARKAQARARQAEKQAAAAADPKKAAV 550
Query: 136 -----RTK-KKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEK 175
R K KK + + + EEE + KK R K K+ +
Sbjct: 551 AAAIARAKAKKAAQQAANAEAEEEVDPKKAAVAAAIARAKAKKAAQ 596
Score = 43.4 bits (103), Expect = 2e-04
Identities = 34/201 (16%), Positives = 75/201 (37%), Gaps = 19/201 (9%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKS------------ 49
+ ++EKKK ++ + + + + R++ E R KK + + K+K
Sbjct: 439 RAIEQEKKKAEEAKARFEARQARLEREKAAREARHKKAAEARAAKDKDAVAAALARVKAK 498
Query: 50 RKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKE-----AEEE 104
+ + K + N ++ +K + ++ + + + + KK A +
Sbjct: 499 KAAATQPIVIKAGARPDNSAVIAAREARKAQARARQAEKQAAAAADPKKAAVAAAIARAK 558
Query: 105 KKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKK 164
KK + N + + +K A + + KK + + EE+ E KK
Sbjct: 559 AKKAAQQAANAEAEEEVDPKKAAVAAAIARAKAKKAAQQAASAEPEEQVAEVDPKKAAVA 618
Query: 165 K--KRTKKKEEEKRKNEKAVR 183
R K K+ E++ N +
Sbjct: 619 AAIARAKAKKAEQQANAEPEE 639
Score = 40.7 bits (96), Expect = 0.001
Identities = 29/167 (17%), Positives = 59/167 (35%), Gaps = 18/167 (10%)
Query: 5 KEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTK----------KKEKNKKNKNKSRKEEE 54
++ R+ + + + K + K+ KK + ++ +E +
Sbjct: 517 SAVIAAREARKAQARARQAEKQAAAAADPKKAAVAAAIARAKAKKAAQQAANAEAEEEVD 576
Query: 55 KKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKK--EAEEEKKKTKNKE 112
KK + K +K ++ E + + + KK A + K K E
Sbjct: 577 PKKAAVAAAIARAKAKKAAQQ------AASAEPEEQVAEVDPKKAAVAAAIARAKAKKAE 630
Query: 113 KNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKK 159
+ N +E + +K A R K ++ + ++ E EE E KK
Sbjct: 631 QQANAEPEEPVDPRKAAVAAAIARAKARKAAQQQANAEPEEAEDPKK 677
Score = 33.4 bits (77), Expect = 0.27
Identities = 24/107 (22%), Positives = 44/107 (41%), Gaps = 16/107 (14%)
Query: 86 EKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKN 145
K + ++ ++EKKK AEE K + + + ++R E E+ +E KK + K+K+
Sbjct: 434 AKAEIRAIEQEKKK-AEEAKARFEAR-----QARLEREKAARE-ARHKKAAEARAAKDKD 486
Query: 146 ---------KSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKAVR 183
K++K + K + E RK + R
Sbjct: 487 AVAAALARVKAKKAAATQPIVIKAGARPDNSAVIAAREARKAQARAR 533
Score = 33.4 bits (77), Expect = 0.27
Identities = 23/117 (19%), Positives = 49/117 (41%), Gaps = 6/117 (5%)
Query: 63 EKNKNKNRKEEKKK--KKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNK-SR 119
K + + ++EKKK + K R E + + +E+ +EA +K K+K+ +
Sbjct: 434 AKAEIRAIEQEKKKAEEAKARF---EARQARLEREKAAREARHKKAAEARAAKDKDAVAA 490
Query: 120 KEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKR 176
K K+A + K + N + E K + + ++ +K+ + K+
Sbjct: 491 ALARVKAKKAAATQPIVIKAGARPDNSAVIAAREARKAQARARQAEKQAAAAADPKK 547
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 50.5 bits (121), Expect = 1e-06
Identities = 38/189 (20%), Positives = 94/189 (49%), Gaps = 2/189 (1%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSR--KEEEKKKRT 59
K +K E ++ K+K + + + + E R ++ ++ + R KEE ++ R
Sbjct: 534 KLEKLENLLEELEELKEKLQLQQLKEELRQLEDRLQELKELLEELRLLRTRKEELEELRE 593
Query: 60 KKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSR 119
+ KE K EE+ + + + E ++ ++ EE ++E E E +K + + + +
Sbjct: 594 RLKELKKKLKELEERLSQLEELLQSLELSEAENELEEAEEELESELEKLNLQAELEELLQ 653
Query: 120 KEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNE 179
EE +++ EE + + ++ ++ +N+ + EE+ EE ++ +++ ++ R + +E K+ E
Sbjct: 654 AALEELEEKVEELEAEIRRELQRIENEEQLEEKLEELEQLEEELEQLREELEELLKKLGE 713
Query: 180 KAVRLTKLS 188
+ +L
Sbjct: 714 IEQLIEELE 722
Score = 44.4 bits (105), Expect = 9e-05
Identities = 27/177 (15%), Positives = 79/177 (44%), Gaps = 3/177 (1%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKK 61
+ +KE ++ K R + + + EEE + ++ + + K + +E E++
Sbjct: 245 EEEKERLEELKARLLEIESLELEALKIREEELRELERLLEELEEKIERLEELEREIE--- 301
Query: 62 KEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKE 121
+ + + + + ++ ++ K K + + EEK ++ E E ++ ++ K +E
Sbjct: 302 ELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLLEE 361
Query: 122 EEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKN 178
++ +E E+ +K +K + + + +E +++ + + +++ EE K
Sbjct: 362 RLKELEERLEELEKELEKALERLKQLEEAIQELKEELAELSAALEEIQEELEELEKE 418
Score = 44.4 bits (105), Expect = 1e-04
Identities = 39/186 (20%), Positives = 85/186 (45%), Gaps = 7/186 (3%)
Query: 4 KKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKE 63
+ + ++++ R ++ + + + EE +R ++ + + ++ EE ++ K K
Sbjct: 267 EALKIREEELRELERLLEELEEKIERLEELEREIEELEEELEGLRALLEELEELLEKLKS 326
Query: 64 KNKNKNRKEEKKKKKKRRTK--KKEKNKNKSRKEEKKKEAEE-----EKKKTKNKEKNKN 116
+ + EEK +K + + +EKN+ EE+ KE EE EK+ K E+ K
Sbjct: 327 LEERLEKLEEKLEKLESELEELAEEKNELAKLLEERLKELEERLEELEKELEKALERLKQ 386
Query: 117 KSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKR 176
+E K++ AE ++E + + EE E E ++ +++ KK + + E +
Sbjct: 387 LEEAIQELKEELAELSAALEEIQEELEELEKELEELERELEELEEEIKKLEEQINQLESK 446
Query: 177 KNEKAV 182
+ A
Sbjct: 447 ELMIAE 452
Score = 44.0 bits (104), Expect = 1e-04
Identities = 30/183 (16%), Positives = 81/183 (44%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKK 61
K K EE + + + E +E +E K+ ++ ++ ++ + ++ E ++R +
Sbjct: 184 KAKIEELEGQLSELLEDIEDLLEALEEELKELKKLEEIQEEQEEEELEQEIEALEERLAE 243
Query: 62 KEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKE 121
E+ K + + + + + + + + E ++ EE ++K + E+ + + +
Sbjct: 244 LEEEKERLEELKARLLEIESLELEALKIREEELRELERLLEELEEKIERLEELEREIEEL 303
Query: 122 EEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKA 181
EEE + ++ ++ + R E+ EE+ +K + + ++ +K E K E+
Sbjct: 304 EEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLLEERL 363
Query: 182 VRL 184
L
Sbjct: 364 KEL 366
Score = 43.2 bits (102), Expect = 2e-04
Identities = 36/189 (19%), Positives = 87/189 (46%), Gaps = 10/189 (5%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSR----KEEEKKK 57
+ + +E KK ++ + +++E+ + + EE ++EK + + K+R + E +
Sbjct: 209 EEELKELKKLEEIQEEQEEEELEQEIEALEERLAELEEEKERLEELKARLLEIESLELEA 268
Query: 58 RTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNK 117
++E+ + R E+ ++K R ++ E+ + +E + A E+ + ++ +
Sbjct: 269 LKIREEELRELERLLEELEEKIERLEELEREIEELEEELEGLRALLEELEELLEKLKSLE 328
Query: 118 SRKEEEEKKKEA------EEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKK 171
R E+ E+K E E ++K K + EE EE +K+ +K ++ + +
Sbjct: 329 ERLEKLEEKLEKLESELEELAEEKNELAKLLEERLKELEERLEELEKELEKALERLKQLE 388
Query: 172 EEEKRKNEK 180
E + E+
Sbjct: 389 EAIQELKEE 397
Score = 42.1 bits (99), Expect = 5e-04
Identities = 35/187 (18%), Positives = 89/187 (47%), Gaps = 4/187 (2%)
Query: 7 EKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNK 66
E K+ K + ++ E ++ ++ E+ ++E + K + +EE++++ +++ +
Sbjct: 178 EVIKEAKAKIEELEGQLSELLEDIEDLLEALEEELKELKKLEEIQEEQEEEELEQEIEAL 237
Query: 67 NKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKK 126
+ E +++K++ K + +S + E K EEE ++ + + + + EE +
Sbjct: 238 EERLAELEEEKERLEELKARLLEIESLELEALKIREEELRELERLLEELEEKIERLEELE 297
Query: 127 KEAEEKKKKRTKKKEKNKNKSRKEEE----EEEKKKKKKKKKKKRTKKKEEEKRKNEKAV 182
+E EE +++ + + E+ EE +K ++K +K ++ +E + KNE A
Sbjct: 298 REIEELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAK 357
Query: 183 RLTKLSA 189
L +
Sbjct: 358 LLEERLK 364
Score = 41.3 bits (97), Expect = 0.001
Identities = 37/185 (20%), Positives = 88/185 (47%), Gaps = 6/185 (3%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKE-EEEEKRTKKKEKNKKNKNKSRKEEEKKKRTK 60
K +E ++++++ +++ + + E EEE++R ++ + E K + +
Sbjct: 216 KKLEEIQEEQEEEELEQEIEALEERLAELEEEKERLEELKARLLEIESLELEALKIREEE 275
Query: 61 KKEKNKNKNRKEEKKKKKKRRTKKKEKNKN-----KSRKEEKKKEAEEEKKKTKNKEKNK 115
+E + EEK ++ + ++ E+ + ++ EE ++ E+ K + EK +
Sbjct: 276 LRELERLLEELEEKIERLEELEREIEELEEELEGLRALLEELEELLEKLKSLEERLEKLE 335
Query: 116 NKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEK 175
K K E E ++ AEEK + +E+ K + EE E++ +K ++ K+ + +E K
Sbjct: 336 EKLEKLESELEELAEEKNELAKLLEERLKELEERLEELEKELEKALERLKQLEEAIQELK 395
Query: 176 RKNEK 180
+ +
Sbjct: 396 EELAE 400
Score = 40.5 bits (95), Expect = 0.001
Identities = 38/189 (20%), Positives = 87/189 (46%), Gaps = 6/189 (3%)
Query: 1 CKNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTK 60
+ + E + ++ ++ E+ K EE + K+K + ++ K + R+ E++ + K
Sbjct: 513 LEEELIELLELEEALKEELEEKLEKLENLLEELEELKEKLQLQQLKEELRQLEDRLQELK 572
Query: 61 KKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRK 120
+ + R +++ ++ R K+ K K K +E + E + ++ +N
Sbjct: 573 ELLEELRLLRTRKEELEELRERLKELKKKLKELEERLSQLEELLQSLELSEAEN------ 626
Query: 121 EEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEK 180
E EE ++E E + +K + E + EE EEK ++ + + ++ ++ E E++ EK
Sbjct: 627 ELEEAEEELESELEKLNLQAELEELLQAALEELEEKVEELEAEIRRELQRIENEEQLEEK 686
Query: 181 AVRLTKLSA 189
L +L
Sbjct: 687 LEELEQLEE 695
Score = 40.5 bits (95), Expect = 0.002
Identities = 26/173 (15%), Positives = 77/173 (44%)
Query: 5 KEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEK 64
EE +K+ + + + + E+EE +++ + + + + +EE + ++
Sbjct: 468 PEEHEKELLELYELELEELEEELSREKEEAELREEIEELEKELRELEEELIELLELEEAL 527
Query: 65 NKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEE 124
+ K EK + ++ ++ + +E+ ++ E+ ++ K + R +EE
Sbjct: 528 KEELEEKLEKLENLLEELEELKEKLQLQQLKEELRQLEDRLQELKELLEELRLLRTRKEE 587
Query: 125 KKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRK 177
++ E K+ + K KE + S+ EE + + + + + + +++ E + +
Sbjct: 588 LEELRERLKELKKKLKELEERLSQLEELLQSLELSEAENELEEAEEELESELE 640
Score = 39.7 bits (93), Expect = 0.003
Identities = 35/179 (19%), Positives = 80/179 (44%), Gaps = 6/179 (3%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKK 61
+KEE + +++ +KE + + E E KE+ ++ K E+ + K+
Sbjct: 491 SREKEEAELREEIEELEKELRELEEELIELLELEEALKEELEEKLEKLENLLEELEELKE 550
Query: 62 KEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKE 121
K + +E+ ++ + R ++ ++ + R +KE EE ++ + K K KE
Sbjct: 551 K---LQLQQLKEELRQLEDRLQELKELLEELRLLRTRKEELEELRE---RLKELKKKLKE 604
Query: 122 EEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEK 180
EE+ + EE + + +N+ + +EE E E +K + + + + E+ + +
Sbjct: 605 LEERLSQLEELLQSLELSEAENELEEAEEELESELEKLNLQAELEELLQAALEELEEKV 663
Score = 39.4 bits (92), Expect = 0.004
Identities = 27/183 (14%), Positives = 82/183 (44%), Gaps = 6/183 (3%)
Query: 1 CKNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTK 60
+EEK++ ++ + + E + + E+ ++ E+ + + + E+ +R
Sbjct: 241 LAELEEEKERLEELKARLLEIESLELEALKIREEELRELERLLEELEEKIERLEELEREI 300
Query: 61 KKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRK 120
++ + + + + ++ ++ K K + + EEK ++ E E ++ ++ K +
Sbjct: 301 EELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLLE 360
Query: 121 EEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEK 180
E ++ +E E+ +K +K + + EE ++ K++ + + EE + + E+
Sbjct: 361 ERLKELEERLEELEKELEKALERLKQ------LEEAIQELKEELAELSAALEEIQEELEE 414
Query: 181 AVR 183
+
Sbjct: 415 LEK 417
Score = 37.8 bits (88), Expect = 0.010
Identities = 24/161 (14%), Positives = 72/161 (44%), Gaps = 3/161 (1%)
Query: 24 NKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTK 83
+ EE E++ + E + + E+++ +++ + K +E +++ +
Sbjct: 464 GQELPEEHEKELLELYELELEELEEELSREKEEAELREEIEELEKELRELEEELIELLEL 523
Query: 84 KKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKN 143
++ + K EK E ++ + ++ + +EE ++ E ++ K ++ +
Sbjct: 524 EEALKEELEEKLEK---LENLLEELEELKEKLQLQQLKEELRQLEDRLQELKELLEELRL 580
Query: 144 KNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKAVRL 184
++E EE ++ K+ KKK K +++ + + +++ L
Sbjct: 581 LRTRKEELEELRERLKELKKKLKELEERLSQLEELLQSLEL 621
Score = 37.8 bits (88), Expect = 0.010
Identities = 29/152 (19%), Positives = 70/152 (46%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKK 61
+ +E +++ + R +E + + + EE+ K +EK +K +++ + E+K K
Sbjct: 298 REIEELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAK 357
Query: 62 KEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKE 121
+ + K +E ++ +K K E+ K ++ KE E + + + + ++
Sbjct: 358 LLEERLKELEERLEELEKELEKALERLKQLEEAIQELKEELAELSAALEEIQEELEELEK 417
Query: 122 EEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEE 153
E E+ + E+ ++ KK E+ N+ +E
Sbjct: 418 ELEELERELEELEEEIKKLEEQINQLESKELM 449
Score = 37.4 bits (87), Expect = 0.015
Identities = 31/172 (18%), Positives = 78/172 (45%), Gaps = 2/172 (1%)
Query: 5 KEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEK 64
+E +++ K+ + K KE + S+ EE + + +N+ + + E E +K + E
Sbjct: 589 EELRERLKELKKKLKELEERLSQLEELLQSLELSEAENELEEAEEELESELEKLNLQAEL 648
Query: 65 NKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEE 124
+ E+ ++K + + + + + + E++ E + E+ + +E + + EE
Sbjct: 649 EELLQAALEELEEKVEELEAEIRRELQRIENEEQLEEKLEELEQLEEELEQLREELEELL 708
Query: 125 KKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKR 176
KK E+ + + ++ + +KE E+ +K + ++ R K + R
Sbjct: 709 KKLGEIEQLIEELESRKAELEELKKELEK--LEKALELLEELREKLGKAGLR 758
Score = 37.0 bits (86), Expect = 0.017
Identities = 30/177 (16%), Positives = 76/177 (42%)
Query: 4 KKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKE 63
K E K ++R + +E+ + ++ E+ +R K+ E+ + + E ++E
Sbjct: 352 KNELAKLLEERLKELEERLEELEKELEKALERLKQLEEAIQELKEELAELSAALEEIQEE 411
Query: 64 KNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEE 123
+ + EE +++ + ++ +K + + + E K+ E K + EE
Sbjct: 412 LEELEKELEELERELEELEEEIKKLEEQINQLESKELMIAELAGAGEKCPVCGQELPEEH 471
Query: 124 EKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEK 180
EK+ + + ++E ++ K E EE ++ +K+ ++ + + E + K
Sbjct: 472 EKELLELYELELEELEEELSREKEEAELREEIEELEKELRELEEELIELLELEEALK 528
Score = 35.9 bits (83), Expect = 0.046
Identities = 35/178 (19%), Positives = 78/178 (43%)
Query: 7 EKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNK 66
+ K K+++ + K K E K K+ K K + + + E + E +
Sbjct: 150 KSKPKERKEILDELFGLEKYEKLSELLKEVIKEAKAKIEELEGQLSELLEDIEDLLEALE 209
Query: 67 NKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKK 126
+ ++ +K ++ + +++E + EE+ E EEEK++ + + + E E
Sbjct: 210 EELKELKKLEEIQEEQEEEELEQEIEALEERLAELEEEKERLEELKARLLEIESLELEAL 269
Query: 127 KEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKAVRL 184
K EE+ ++ + E+ + K + EE E + ++ +++ + EE + EK L
Sbjct: 270 KIREEELRELERLLEELEEKIERLEELEREIEELEEELEGLRALLEELEELLEKLKSL 327
Score = 34.4 bits (79), Expect = 0.13
Identities = 33/192 (17%), Positives = 85/192 (44%), Gaps = 5/192 (2%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKK 61
K+ + + + ++E ++ K E EE +KE + + E ++ ++
Sbjct: 471 HEKELLELYELELEELEEELSREKEEAELREEIEELEKELRELEEELIELLELEEALKEE 530
Query: 62 KEKN----KNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNK 117
E+ +N + E+ K+K + + KE+ + + ++ KE EE + + +++ +
Sbjct: 531 LEEKLEKLENLLEELEELKEKLQLQQLKEELRQLEDRLQELKELLEELRLLRTRKEELEE 590
Query: 118 SRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRK 177
R+ +E KK+ +E ++R + E+ E E E ++ +++ + + K + + +
Sbjct: 591 LRERLKELKKKLKE-LEERLSQLEELLQSLELSEAENELEEAEEELESELEKLNLQAELE 649
Query: 178 NEKAVRLTKLSA 189
L +L
Sbjct: 650 ELLQAALEELEE 661
Score = 33.6 bits (77), Expect = 0.20
Identities = 31/189 (16%), Positives = 86/189 (45%), Gaps = 7/189 (3%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKK 61
+ ++E KK +++ + ++ E+ +E ++++ + + E + +
Sbjct: 428 ELEEEIKKLEEQINQLESKELMIAELAGAGEKCPVCGQELPEEHEKELLELYELELEELE 487
Query: 62 KEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKE 121
+E ++ K E +++ ++ + +E + E ++ +EE ++ K +N E
Sbjct: 488 EELSREKEEAELREEIEELEKELRELEEELIELLELEEALKEELEEKLEKLEN----LLE 543
Query: 122 EEEKKKEAEEKKKKRTKKKEKNKNKS---RKEEEEEEKKKKKKKKKKKRTKKKEEEKRKN 178
E E+ KE + ++ + + ++ EE + +K++ ++ R + KE +K+
Sbjct: 544 ELEELKEKLQLQQLKEELRQLEDRLQELKELLEELRLLRTRKEELEELRERLKELKKKLK 603
Query: 179 EKAVRLTKL 187
E RL++L
Sbjct: 604 ELEERLSQL 612
Score = 31.3 bits (71), Expect = 1.2
Identities = 28/185 (15%), Positives = 79/185 (42%), Gaps = 10/185 (5%)
Query: 3 NKKEEKKKKKKRRTK--KKEKNKNKSRKEE--------EEEKRTKKKEKNKKNKNKSRKE 52
K EEK +K + + +EKN+ EE EE + ++ ++ K
Sbjct: 332 EKLEEKLEKLESELEELAEEKNELAKLLEERLKELEERLEELEKELEKALERLKQLEEAI 391
Query: 53 EEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKE 112
+E K+ + + ++E ++ +K+ ++E + + ++ +++ + + K
Sbjct: 392 QELKEELAELSAALEEIQEELEELEKELEELERELEELEEEIKKLEEQINQLESKELMIA 451
Query: 113 KNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKE 172
+ K ++ EE +K+ + E + +E E+++ + +++ ++ K+
Sbjct: 452 ELAGAGEKCPVCGQELPEEHEKELLELYELELEELEEELSREKEEAELREEIEELEKELR 511
Query: 173 EEKRK 177
E + +
Sbjct: 512 ELEEE 516
Score = 29.7 bits (67), Expect = 3.5
Identities = 21/143 (14%), Positives = 59/143 (41%), Gaps = 4/143 (2%)
Query: 4 KKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKE 63
+ EE+ + + + + + + + EE + ++ + + + R E E+ + +E
Sbjct: 630 EAEEELESELEKLNLQAELEELLQAALEELEEKVEELEAEIRRELQRIENEE----QLEE 685
Query: 64 KNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEE 123
K + + EE+ ++ + ++ K + + ++ E+ + + + KE K + E
Sbjct: 686 KLEELEQLEEELEQLREELEELLKKLGEIEQLIEELESRKAELEELKKELEKLEKALELL 745
Query: 124 EKKKEAEEKKKKRTKKKEKNKNK 146
E+ +E K R +
Sbjct: 746 EELREKLGKAGLRADILRNLLAQ 768
>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y. Members of this family are
RNase Y, an endoribonuclease. The member from Bacillus
subtilis, YmdA, has been shown to be involved in
turnover of yitJ riboswitch [Transcription, Degradation
of RNA].
Length = 514
Score = 49.5 bits (119), Expect = 2e-06
Identities = 42/165 (25%), Positives = 78/165 (47%), Gaps = 14/165 (8%)
Query: 27 RKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTK---KKEKNKNKNRKEEKKKKKKRRTK 83
RK E+K +E K+ +++KE E K+ KE+ + E++ K++R
Sbjct: 19 RKRIAEKKLGSAEELAKRIIEEAKKEAETLKKEALLEAKEEVHKLRAELERELKERRNEL 78
Query: 84 KKEKNKNKSRKEEKKKEAEEEKKKTKN---KEKNKNKSRKEEEEKKKEAEEKKKKRTKKK 140
++ + + R+E ++ E KK +N KEK + K +EK++E EE ++ ++
Sbjct: 79 QRLERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQREEL 138
Query: 141 EK--------NKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRK 177
E+ K +E EEE + + K K+ + KEE +K
Sbjct: 139 ERISGLTQEEAKEILLEEVEEEARHEAAKLIKEIEEEAKEEADKK 183
Score = 43.4 bits (103), Expect = 2e-04
Identities = 40/167 (23%), Positives = 77/167 (46%), Gaps = 6/167 (3%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKN------KSRKEEEK 55
K E+K + K+ + K + ++E + KE+ K + K R+ E +
Sbjct: 20 KRIAEKKLGSAEELAKRIIEEAKKEAETLKKEALLEAKEEVHKLRAELERELKERRNELQ 79
Query: 56 KKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNK 115
+ + ++ + +RK E KK+ +KKEK + K +KE E E+ + +E+ +
Sbjct: 80 RLERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQREELE 139
Query: 116 NKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKK 162
S +EE K+ E+ ++ + + K +EE +EE KK K+
Sbjct: 140 RISGLTQEEAKEILLEEVEEEARHEAAKLIKEIEEEAKEEADKKAKE 186
Score = 40.7 bits (96), Expect = 0.001
Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 3/120 (2%)
Query: 73 EKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNK-NKSRKEEEEKKKEAEE 131
EKK K+ + K E KKEA E K+ +K + + + KE + + E
Sbjct: 24 EKKLGSAEELAKRIIEEAKKEAETLKKEALLEAKEEVHKLRAELERELKERRNELQRLER 83
Query: 132 KKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEE--EKRKNEKAVRLTKLSA 189
+ +R + ++ K+EE EKK+K+ K+K +KEE E+ E+ L ++S
Sbjct: 84 RLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQREELERISG 143
Score = 39.1 bits (92), Expect = 0.004
Identities = 32/140 (22%), Positives = 66/140 (47%), Gaps = 18/140 (12%)
Query: 55 KKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKE-----KNKNKSRKEEKKKEAEEEKKKTK 109
K+ KK + ++ ++ KK+ T KKE K + + E ++E +E + + +
Sbjct: 20 KRIAEKKLGSAEELAKRIIEEAKKEAETLKKEALLEAKEEVHKLRAELERELKERRNELQ 79
Query: 110 NKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTK 169
E+ + R+E ++K E+ +KK++ +KKEK E K+K +K +
Sbjct: 80 RLER-RLLQREETLDRKMESLDKKEENLEKKEK------------ELSNKEKNLDEKEEE 126
Query: 170 KKEEEKRKNEKAVRLTKLSA 189
+E + E+ R++ L+
Sbjct: 127 LEELIAEQREELERISGLTQ 146
>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional.
Length = 434
Score = 49.2 bits (118), Expect = 2e-06
Identities = 21/70 (30%), Positives = 34/70 (48%)
Query: 111 KEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKK 170
+E K + E K K EKK + KK K +KE+E+E+ K KK+ + K K
Sbjct: 365 EEPLKARVIDELRPKTKAPSEKKTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDTKNIGK 424
Query: 171 KEEEKRKNEK 180
+ + +E+
Sbjct: 425 RRKPSGTSEE 434
Score = 49.2 bits (118), Expect = 2e-06
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 25 KSRKEEEEEKRTKK-KEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTK 83
K+R +E +TK EK +K + +K+ K+KEK K K R + K KRR
Sbjct: 369 KARVIDELRPKTKAPSEKKTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDTKNIGKRRKP 428
Query: 84 KKEKNK 89
+
Sbjct: 429 SGTSEE 434
Score = 43.8 bits (104), Expect = 1e-04
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 52 EEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNK 111
EE K R + + K K E+K K ++ K K + KE++K + ++ + TKN
Sbjct: 365 EEPLKARVIDELRPKTKAPSEKKTGKPSKKVLAKRAEKKE--KEKEKPKVKKRHRDTKNI 422
Query: 112 EKNKNKSRKEEE 123
K + S EE
Sbjct: 423 GKRRKPSGTSEE 434
Score = 43.0 bits (102), Expect = 2e-04
Identities = 16/56 (28%), Positives = 29/56 (51%)
Query: 46 KNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEA 101
K K+ E++ K +KK + + +++EK+K K ++ + KN K RK E
Sbjct: 379 KTKAPSEKKTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDTKNIGKRRKPSGTSEE 434
Score = 41.9 bits (99), Expect = 4e-04
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEK-RTKKKEKNKKNKNKSRK 51
K K +KK K KK K +KE+E+EK + KK+ ++ KN K RK
Sbjct: 379 KTKAPSEKKTGK--PSKKVLAKRAEKKEKEKEKPKVKKRHRDTKNIGKRRK 427
Score = 41.1 bits (97), Expect = 7e-04
Identities = 15/54 (27%), Positives = 27/54 (50%)
Query: 51 KEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEE 104
K +KK K +K K ++++K+K+K + KK+ ++ K K EE
Sbjct: 381 KAPSEKKTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDTKNIGKRRKPSGTSEE 434
Score = 41.1 bits (97), Expect = 8e-04
Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 4/78 (5%)
Query: 26 SRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKK 85
R EE K E K K S K K + KK K +KE K+K+K + K+
Sbjct: 361 ERYIEEPLKARVIDELRPKTKAPSEK---KTGKPSKKVLAKRAEKKE-KEKEKPKVKKRH 416
Query: 86 EKNKNKSRKEEKKKEAEE 103
KN ++ + +EE
Sbjct: 417 RDTKNIGKRRKPSGTSEE 434
Score = 41.1 bits (97), Expect = 8e-04
Identities = 12/54 (22%), Positives = 26/54 (48%)
Query: 98 KKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEE 151
K +E++ K K K +KE+E++K + +++ + ++ K EE
Sbjct: 381 KAPSEKKTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDTKNIGKRRKPSGTSEE 434
Score = 40.3 bits (95), Expect = 0.001
Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 10/68 (14%)
Query: 102 EEEKKKTKN-KEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKK 160
+E + KTK EK K K+ K+ E +EK+K++ K K+++++ K K
Sbjct: 374 DELRPKTKAPSEKKTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDT---------KNIGK 424
Query: 161 KKKKKKRT 168
++K +
Sbjct: 425 RRKPSGTS 432
Score = 39.2 bits (92), Expect = 0.003
Identities = 18/63 (28%), Positives = 29/63 (46%)
Query: 13 KRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKE 72
K R + + K K+ E++ K +KK + K + KE+ K K+ + KN K RK
Sbjct: 369 KARVIDELRPKTKAPSEKKTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDTKNIGKRRKP 428
Query: 73 EKK 75
Sbjct: 429 SGT 431
Score = 37.6 bits (88), Expect = 0.009
Identities = 13/56 (23%), Positives = 24/56 (42%)
Query: 74 KKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEA 129
K K + K K +++ EKK++ +E+ K K KN ++ + E
Sbjct: 379 KTKAPSEKKTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDTKNIGKRRKPSGTSEE 434
Score = 37.6 bits (88), Expect = 0.011
Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Query: 130 EEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKAVRLTKLSA 189
EE K R + + K K E++ K KK KR +KKE+EK K + R
Sbjct: 365 EEPLKARVIDELRPKTK---APSEKKTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDTKN 421
Query: 190 FG 191
G
Sbjct: 422 IG 423
Score = 36.1 bits (84), Expect = 0.029
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 48 KSRKEEEKKKRTKK-KEKNKNK-NRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEK 105
K+R +E + +TK EK K ++K K+ +K+ K+KEK K K R + K + K
Sbjct: 369 KARVIDELRPKTKAPSEKKTGKPSKKVLAKRAEKK-EKEKEKPKVKKRHRDTKNIGKRRK 427
Query: 106 KKTKNKE 112
++E
Sbjct: 428 PSGTSEE 434
Score = 34.9 bits (81), Expect = 0.062
Identities = 11/59 (18%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Query: 8 KKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNK 66
K K + K K +++ E++EK +K + K++++ K+R +
Sbjct: 379 KTKAPSEKKTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDTKNI---GKRRKPSGTSEE 434
Score = 34.1 bits (79), Expect = 0.12
Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 15 RTKK-KEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKN 67
+TK EK K K+ ++ KK+++ +K K K R + K ++K +
Sbjct: 379 KTKAPSEKKTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDTKNIGKRRKPSGTS 432
>gnl|CDD|172341 PRK13808, PRK13808, adenylate kinase; Provisional.
Length = 333
Score = 48.7 bits (116), Expect = 3e-06
Identities = 31/137 (22%), Positives = 49/137 (35%)
Query: 4 KKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKE 63
KK K K K + K ++ KK K + K+ K K + KK
Sbjct: 196 AANAKKAAKTPAAKSGAKKASAKAKSAAKKVSKKKAAKTAVSAKKAAKTAAKAAKKAKKT 255
Query: 64 KNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEE 123
K + + KK ++ K K + K +A+ +KK K +
Sbjct: 256 AKKALKKAAKAVKKAAKKAAKAAAKAAKGAAKATKGKAKAKKKAGKKAAAGSKAKATAKA 315
Query: 124 EKKKEAEEKKKKRTKKK 140
K+ +K KK TKK+
Sbjct: 316 PKRGAKGKKAKKVTKKR 332
Score = 47.2 bits (112), Expect = 7e-06
Identities = 36/137 (26%), Positives = 57/137 (41%), Gaps = 1/137 (0%)
Query: 50 RKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTK 109
KK K+ K + K K+ +KKK S K+ K A+ KK K
Sbjct: 195 GAANAKKAAKTPAAKSGAKKASAKAKSAAKKVSKKKAAKTAVSAKKAAKTAAKAAKKAKK 254
Query: 110 NKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTK 169
+K K+ K ++ K+A + K K K K + + +++ KK K K T
Sbjct: 255 TAKKALKKAAKAVKKAAKKAAKAAAKAAKGAAK-ATKGKAKAKKKAGKKAAAGSKAKATA 313
Query: 170 KKEEEKRKNEKAVRLTK 186
K + K +KA ++TK
Sbjct: 314 KAPKRGAKGKKAKKVTK 330
Score = 46.8 bits (111), Expect = 9e-06
Identities = 38/139 (27%), Positives = 56/139 (40%), Gaps = 2/139 (1%)
Query: 38 KKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEK 97
K K + K KK K K K ++K K K KK K K+ K+ K
Sbjct: 196 AANAKKAAKTPAAKSGAKKASAKAKSAAKKVSKK--KAAKTAVSAKKAAKTAAKAAKKAK 253
Query: 98 KKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKK 157
K + KK K +K K+ K + K A + K + K K+K K+ + +
Sbjct: 254 KTAKKALKKAAKAVKKAAKKAAKAAAKAAKGAAKATKGKAKAKKKAGKKAAAGSKAKATA 313
Query: 158 KKKKKKKKKRTKKKEEEKR 176
K K+ K + KK +KR
Sbjct: 314 KAPKRGAKGKKAKKVTKKR 332
Score = 44.9 bits (106), Expect = 4e-05
Identities = 35/139 (25%), Positives = 57/139 (41%), Gaps = 4/139 (2%)
Query: 24 NKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTK 83
N + + ++ K+ + K K+ ++K +KK K + KK K+ K
Sbjct: 198 NAKKAAKTPAAKSGAKKASAKAKSAAKKVSKKKAAKTAVSAKKAAKTAAKAAKKAKKTAK 257
Query: 84 KKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKN 143
K K K+ K+ KK A+ K K K K KK+A +K +K K
Sbjct: 258 KALKKAAKAVKKAAKKAAKAAAKAAKGAAKATKGKAK----AKKKAGKKAAAGSKAKATA 313
Query: 144 KNKSRKEEEEEEKKKKKKK 162
K R + ++ KK KK+
Sbjct: 314 KAPKRGAKGKKAKKVTKKR 332
Score = 43.0 bits (101), Expect = 2e-04
Identities = 29/132 (21%), Positives = 50/132 (37%), Gaps = 2/132 (1%)
Query: 51 KEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKN 110
K+ K K K + K KK K++ K + K+ K K + +K K
Sbjct: 200 KKAAKTPAAKSGAKKASAKAKSAAKKVSKKKAAKTAVSAKKAAKTAAKAAKKAKKTAKKA 259
Query: 111 KEKNKNKSRKEEEEKKKEAEE--KKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRT 168
+K +K ++ K A + K + K + K ++ K K K KR
Sbjct: 260 LKKAAKAVKKAAKKAAKAAAKAAKGAAKATKGKAKAKKKAGKKAAAGSKAKATAKAPKRG 319
Query: 169 KKKEEEKRKNEK 180
K ++ K+ +K
Sbjct: 320 AKGKKAKKVTKK 331
Score = 41.0 bits (96), Expect = 7e-04
Identities = 34/143 (23%), Positives = 48/143 (33%), Gaps = 13/143 (9%)
Query: 52 EEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNK 111
KK K + K K ++ KK K KK A+ K K
Sbjct: 196 AANAKKAAKTPAAKSGAKKASAKAKSAAKKVSKK---KAAKTAVSAKKAAKTAAKAAKKA 252
Query: 112 EKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKK 171
+K K+ K+ + K+A +K K K K K+ K K K KK+ KK
Sbjct: 253 KKTAKKALKKAAKAVKKAAKKAAKAAAKAAKGAAKA----------TKGKAKAKKKAGKK 302
Query: 172 EEEKRKNEKAVRLTKLSAFGISG 194
K + + K A G
Sbjct: 303 AAAGSKAKATAKAPKRGAKGKKA 325
Score = 37.9 bits (88), Expect = 0.006
Identities = 30/115 (26%), Positives = 45/115 (39%), Gaps = 1/115 (0%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEE-EEEKRTKKKEKNKKNKNKSRKEEEKKKRTK 60
K + K K+ +KKK S K+ + + KK K K + + KK K
Sbjct: 213 KKASAKAKSAAKKVSKKKAAKTAVSAKKAAKTAAKAAKKAKKTAKKALKKAAKAVKKAAK 272
Query: 61 KKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNK 115
K K K K K K + KK+ K + + K A+ K+ K K+ K
Sbjct: 273 KAAKAAAKAAKGAAKATKGKAKAKKKAGKKAAAGSKAKATAKAPKRGAKGKKAKK 327
Score = 37.9 bits (88), Expect = 0.007
Identities = 34/115 (29%), Positives = 51/115 (44%), Gaps = 3/115 (2%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKK-EKNKKNKNKSRKEEEKK--KR 58
K K KK KK+ K K ++ + K+ KK +K K K+ K+ KK K
Sbjct: 218 KAKSAAKKVSKKKAAKTAVSAKKAAKTAAKAAKKAKKTAKKALKKAAKAVKKAAKKAAKA 277
Query: 59 TKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEK 113
K K K K + K KKK K +K K+ + K+ A+ +K K K++
Sbjct: 278 AAKAAKGAAKATKGKAKAKKKAGKKAAAGSKAKATAKAPKRGAKGKKAKKVTKKR 332
>gnl|CDD|202096 pfam02029, Caldesmon, Caldesmon.
Length = 431
Score = 48.5 bits (115), Expect = 3e-06
Identities = 45/178 (25%), Positives = 92/178 (51%), Gaps = 9/178 (5%)
Query: 16 TKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKK 75
+++EK +++ +EE EE K + K + + + ++++K + +E+ K K E+
Sbjct: 111 VEEEEKEESREEREEVEETEGVTKSEQKNDWRDAEECQKEEKEPEPEEEEKPKRGSLEEN 170
Query: 76 KKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKK 135
+ K K SR + + E K+ K K+K + + + EE KKK EE++K
Sbjct: 171 NGEFMTHKLKHTENTFSRGGAEGAQVEAGKEFEKLKQKQQEAALELEELKKKR-EERRKV 229
Query: 136 RTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKAVRLTKLSAFGIS 193
+++++ K +EE +K +++++KR K+E E+R+ E A + K+ G+S
Sbjct: 230 LEEEEQRRK--------QEEADRKSREEEEKRRLKEEIERRRAEAAEKRQKVPEDGLS 279
Score = 47.7 bits (113), Expect = 6e-06
Identities = 44/172 (25%), Positives = 82/172 (47%), Gaps = 2/172 (1%)
Query: 1 CKNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTK 60
K E+K + + +++ K +EEE+ KR +E N + K E
Sbjct: 130 EGVTKSEQKNDWRDAEECQKEEKEPEPEEEEKPKRGSLEENNGEFMTHKLKHTENTFSRG 189
Query: 61 KKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRK 120
E + + KE +K K+K++ E + K ++EE++K EEE++ + K++ ++ +
Sbjct: 190 GAEGAQVEAGKEFEKLKQKQQEAALELEELKKKREERRKVLEEEEQ--RRKQEEADRKSR 247
Query: 121 EEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKE 172
EEEEK++ EE +++R + EK + E++K K K K E
Sbjct: 248 EEEEKRRLKEEIERRRAEAAEKRQKVPEDGLSEDKKPFKCFTPKGSSLKITE 299
Score = 30.8 bits (69), Expect = 1.4
Identities = 44/181 (24%), Positives = 88/181 (48%), Gaps = 24/181 (13%)
Query: 23 KNKSRKEEEEEKRTK---KKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKN-RKEEKKKKK 78
+ +R+EE ++R +++K K + + E +R ++ +N+ +EEK++ +
Sbjct: 61 ERLARREERRDERFSEALERQKEFKPTSTDQSLSEPSRRMQEDSGAENETVEEEEKEESR 120
Query: 79 KRR-------TKKKEKNKNKSR------KEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEK 125
+ R K + KN R KEEK+ E EEE+K + + N + K
Sbjct: 121 EEREEVEETEGVTKSEQKNDWRDAEECQKEEKEPEPEEEEKPKRGSLEENNGEFMTHKLK 180
Query: 126 KKE-------AEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKN 178
E AE + + K+ EK K K ++ E E+ KKK+++++K +++E+ +++
Sbjct: 181 HTENTFSRGGAEGAQVEAGKEFEKLKQKQQEAALELEELKKKREERRKVLEEEEQRRKQE 240
Query: 179 E 179
E
Sbjct: 241 E 241
Score = 28.8 bits (64), Expect = 5.3
Identities = 28/150 (18%), Positives = 72/150 (48%)
Query: 32 EEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNK 91
E +++ ++++ +++E K + + ++ R +E + +++EK +++
Sbjct: 61 ERLARREERRDERFSEALERQKEFKPTSTDQSLSEPSRRMQEDSGAENETVEEEEKEESR 120
Query: 92 SRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEE 151
+EE ++ K + KN ++ + +KEE+E + E EEK K+ + ++ + + K +
Sbjct: 121 EEREEVEETEGVTKSEQKNDWRDAEECQKEEKEPEPEEEEKPKRGSLEENNGEFMTHKLK 180
Query: 152 EEEEKKKKKKKKKKKRTKKKEEEKRKNEKA 181
E + + + KE EK K ++
Sbjct: 181 HTENTFSRGGAEGAQVEAGKEFEKLKQKQQ 210
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common
bacterial type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. This family
represents the SMC protein of most bacteria. The smc
gene is often associated with scpB (TIGR00281) and scpA
genes, where scp stands for segregation and condensation
protein. SMC was shown (in Caulobacter crescentus) to be
induced early in S phase but present and bound to DNA
throughout the cell cycle [Cellular processes, Cell
division, DNA metabolism, Chromosome-associated
proteins].
Length = 1179
Score = 48.9 bits (117), Expect = 4e-06
Identities = 35/186 (18%), Positives = 81/186 (43%), Gaps = 2/186 (1%)
Query: 4 KKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKE 63
+K E+ K+ K ++ E R EE E+ + +E+ K+ + +E + + +++
Sbjct: 210 EKAERYKELKAELRELELALLVLRLEELREELEELQEELKEA-EEELEELTAELQELEEK 268
Query: 64 KNKNKNRKEEKKKKKKRRTKK-KEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEE 122
+ + E +++ + K+ SR E++K+ E + + + +E
Sbjct: 269 LEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEEL 328
Query: 123 EEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKAV 182
E K E E+ + +K E+ K + E E E+ + + ++ + R ++ EE+ V
Sbjct: 329 ESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKV 388
Query: 183 RLTKLS 188
+L
Sbjct: 389 AQLELQ 394
Score = 47.0 bits (112), Expect = 1e-05
Identities = 30/199 (15%), Positives = 88/199 (44%), Gaps = 9/199 (4%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKK 61
++K +E ++ +K E+ K + E E + + + + +++ + +E+ + R+K
Sbjct: 329 ESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKV 388
Query: 62 KEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSR-- 119
+ + + + + + R+E ++E EE KK + E + ++
Sbjct: 389 AQL-----ELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELE 443
Query: 120 --KEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRK 177
+EE E+ +E E+ ++ ++ + ++ + + E++ + + + ++ +E
Sbjct: 444 ELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEG 503
Query: 178 NEKAVRLTKLSAFGISGYL 196
+ V+ + G+SG L
Sbjct: 504 FSEGVKALLKNQSGLSGIL 522
Score = 45.0 bits (107), Expect = 6e-05
Identities = 29/183 (15%), Positives = 85/183 (46%), Gaps = 4/183 (2%)
Query: 3 NKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKK 62
+ + +++K+ +++ N + +E E + + + ++ + + EE+ + K+
Sbjct: 294 ANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLE--ELKE 351
Query: 63 EKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKE- 121
E + EE + + + + E+ + + K E + + N E + ++R E
Sbjct: 352 ELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLER 411
Query: 122 -EEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEK 180
E+ +++ +E ++ K +E + + E EE E++ ++ +++ +R ++ EE R+ +
Sbjct: 412 LEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELE 471
Query: 181 AVR 183
Sbjct: 472 EAE 474
Score = 42.4 bits (100), Expect = 4e-04
Identities = 29/185 (15%), Positives = 82/185 (44%), Gaps = 4/185 (2%)
Query: 5 KEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKE--KNKKNKNKSRKEEEKKKRTKKK 62
+E + ++ K +E S EEE E+ K+ N+ ++ + +K+ +++ +
Sbjct: 256 EELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLE 315
Query: 63 EKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEE 122
+ + + E+ + K +E + + + EE K+E E + + + E +
Sbjct: 316 RQLEELEAQLEELESKLDE-LAEELAELEEKLEELKEELESLEAELEELEAELEELESRL 374
Query: 123 EEKKKEAEEKKKKRTK-KKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKA 181
EE +++ E + K + + + + E E ++ + ++++ + + +E K+ E
Sbjct: 375 EELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAE 434
Query: 182 VRLTK 186
++ +
Sbjct: 435 LKELQ 439
Score = 36.6 bits (85), Expect = 0.027
Identities = 22/180 (12%), Positives = 69/180 (38%), Gaps = 5/180 (2%)
Query: 3 NKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKK 62
++ E+ +K+ ++ K E E ++ + +K + E E ++ ++
Sbjct: 711 EEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERL 770
Query: 63 EKNKNKNRKEEKKKKK---KRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSR 119
E+ + + + E + ++ + K+E + +E + E ++ N +
Sbjct: 771 EEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLE 830
Query: 120 KEEEEKKKEAE--EKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRK 177
+ ++ E E++ + + ++ +E EE ++ + + + + EE
Sbjct: 831 RRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALA 890
Score = 36.6 bits (85), Expect = 0.029
Identities = 25/184 (13%), Positives = 74/184 (40%), Gaps = 6/184 (3%)
Query: 3 NKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEK--NKKNKNKSRKEEEKKKRTK 60
KE + + + ++ + + E E + + + + K + K+ +E + R +
Sbjct: 752 LSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAE 811
Query: 61 KKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKN---KEKNKNK 117
N+ E+ + +RR E+ + + +E+ ++ +E+ + E+ +
Sbjct: 812 LTLLNEEAANLRERLESLERRIAATER-RLEDLEEQIEELSEDIESLAAEIEELEELIEE 870
Query: 118 SRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRK 177
E E E ++ + + + S + E E K+ + +++ ++ +K + + +
Sbjct: 871 LESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELR 930
Query: 178 NEKA 181
E
Sbjct: 931 LEGL 934
Score = 36.6 bits (85), Expect = 0.030
Identities = 27/185 (14%), Positives = 75/185 (40%), Gaps = 2/185 (1%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEE-KKKRTK 60
+ + +++ +K+ E++K+ ++ + E + ++ +K
Sbjct: 272 LRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESK 331
Query: 61 KKEKNKNKNRKEEKKK-KKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSR 119
E + EEK + K+ + + + + E+ + EE ++ ++K
Sbjct: 332 LDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQL 391
Query: 120 KEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNE 179
+ + E+ + R ++ E + + ++E EE KK ++ + K+ + + +E E+ E
Sbjct: 392 ELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEE 451
Query: 180 KAVRL 184
L
Sbjct: 452 LQEEL 456
Score = 35.8 bits (83), Expect = 0.049
Identities = 32/175 (18%), Positives = 76/175 (43%), Gaps = 4/175 (2%)
Query: 15 RTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEK 74
R ++ E+ + K + EE+ +K + + + +EE ++ R + +E ++ + +
Sbjct: 675 RRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKD 734
Query: 75 KKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKK 134
+ + ++ E+ + KE + EAE E+ + + +E + E E + +E E + +
Sbjct: 735 LARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEEL--AEAEAEIEELEAQIE 792
Query: 135 KRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKAVRLTKLSA 189
+ K+E + +E E ++ R + + E+R RL L
Sbjct: 793 QL--KEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEE 845
>gnl|CDD|240246 PTZ00053, PTZ00053, methionine aminopeptidase 2; Provisional.
Length = 470
Score = 48.6 bits (116), Expect = 4e-06
Identities = 23/115 (20%), Positives = 55/115 (47%), Gaps = 6/115 (5%)
Query: 17 KKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKK 76
E +N+ ++++++ K+ K+KNKK+K ++ + ++N++ E K+
Sbjct: 1 AMNENGENEVKQQKQQNKQKGTKKKNKKSKKDVDDDDA------FLAELISENQEAENKQ 54
Query: 77 KKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEE 131
K++ KKK+K K K+ E + + ++ + RK ++E ++
Sbjct: 55 NNKKKKKKKKKKKKKNLGEAYDLAYDLPVVWSSAAFQDNSHIRKLGNWPEQEWKQ 109
Score = 47.0 bits (112), Expect = 1e-05
Identities = 19/87 (21%), Positives = 47/87 (54%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKK 61
+N+ +++K++ K++ KK+ K+K ++++ + +N++ +NK +++KKK+ KK
Sbjct: 7 ENEVKQQKQQNKQKGTKKKNKKSKKDVDDDDAFLAELISENQEAENKQNNKKKKKKKKKK 66
Query: 62 KEKNKNKNRKEEKKKKKKRRTKKKEKN 88
K+KN + + + N
Sbjct: 67 KKKNLGEAYDLAYDLPVVWSSAAFQDN 93
Score = 42.0 bits (99), Expect = 5e-04
Identities = 19/92 (20%), Positives = 41/92 (44%), Gaps = 5/92 (5%)
Query: 88 NKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEE-----EEKKKEAEEKKKKRTKKKEK 142
N++ + E K++ ++ K+K K+ K+K ++ E E +E + K+ KK+K
Sbjct: 1 AMNENGENEVKQQKQQNKQKGTKKKNKKSKKDVDDDDAFLAELISENQEAENKQNNKKKK 60
Query: 143 NKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEE 174
K K +K++ E + ++
Sbjct: 61 KKKKKKKKKNLGEAYDLAYDLPVVWSSAAFQD 92
Score = 40.9 bits (96), Expect = 0.001
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Query: 108 TKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEK---NKNKSRKEEEEEEKKKKKKKKK 164
N+ +++++ K+K ++K KK K + + E +E E K+ KKKK
Sbjct: 1 AMNENGENEVKQQKQQNKQKGTKKKNKKSKKDVDDDDAFLAELISENQEAENKQNNKKKK 60
Query: 165 KKRTKKKEEEKRKNEK 180
KK+ KKK++ +
Sbjct: 61 KKKKKKKKKNLGEAYD 76
Score = 40.1 bits (94), Expect = 0.002
Identities = 23/90 (25%), Positives = 47/90 (52%), Gaps = 8/90 (8%)
Query: 109 KNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKK--------EKNKNKSRKEEEEEEKKKKK 160
E +N+ ++++++ K++ +KK K++KK + +++++ E ++ KKKK
Sbjct: 1 AMNENGENEVKQQKQQNKQKGTKKKNKKSKKDVDDDDAFLAELISENQEAENKQNNKKKK 60
Query: 161 KKKKKKRTKKKEEEKRKNEKAVRLTKLSAF 190
KKKKKK+ K E + +AF
Sbjct: 61 KKKKKKKKKNLGEAYDLAYDLPVVWSSAAF 90
>gnl|CDD|222447 pfam13904, DUF4207, Domain of unknown function (DUF4207). This
family is found in eukaryotes; it has several conserved
tryptophan residues. The function is not known.
Length = 261
Score = 47.4 bits (113), Expect = 4e-06
Identities = 39/161 (24%), Positives = 91/161 (56%), Gaps = 12/161 (7%)
Query: 15 RTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEK 74
R+ K+ K + ++++ E K+ ++ KK + + EEK+K+ ++KE+ + + R+
Sbjct: 74 RSLKEVKLERQAQEAYENWLSAKQAQRQKKLQ---KLLEEKQKQEREKEREEAELRQRLA 130
Query: 75 KKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKK 134
K+K + ++K + K R + KKEA E + + + ++ ++E+ K
Sbjct: 131 KEKYEEWCRQKAQQAAKQRTPKHKKEAAESASSSLSGSA---------KPERNVSQEEAK 181
Query: 135 KRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEK 175
KR ++ E K K ++++ EEE++K++KK++++ +K++ E+
Sbjct: 182 KRLQEWELKKLKQQQQKREEERRKQRKKQQEEEERKQKAEE 222
Score = 43.6 bits (103), Expect = 8e-05
Identities = 33/131 (25%), Positives = 76/131 (58%), Gaps = 2/131 (1%)
Query: 5 KEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEK 64
+ +KK +K +K+++ + K R+E E +R K++ + + K+++ +++ KKE
Sbjct: 98 AQRQKKLQKLLEEKQKQEREKEREEAELRQRLAKEKYEEWCRQKAQQAAKQRTPKHKKEA 157
Query: 65 NKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEE 124
++ + K +R + E+ K + ++ E KK ++++K+ + + K + K ++EEEE
Sbjct: 158 AESASSSLSGSAKPERNVSQ-EEAKKRLQEWELKKLKQQQQKREEERRKQRKK-QQEEEE 215
Query: 125 KKKEAEEKKKK 135
+K++AEE +K
Sbjct: 216 RKQKAEEAWQK 226
Score = 40.1 bits (94), Expect = 0.001
Identities = 34/153 (22%), Positives = 77/153 (50%), Gaps = 17/153 (11%)
Query: 47 NKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKK 106
SR +E K + +E +N ++ +++KK + +EK K +E +K+ E E +
Sbjct: 71 TYSRSLKEVKLERQAQEAYENWLSAKQAQRQKKLQKLLEEKQK----QEREKEREEAELR 126
Query: 107 KTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKK-------------KEKNKNKSRKEEEE 153
+ KEK + R++ ++ K+ K KK + + ++ +++K +E
Sbjct: 127 QRLAKEKYEEWCRQKAQQAAKQRTPKHKKEAAESASSSLSGSAKPERNVSQEEAKKRLQE 186
Query: 154 EEKKKKKKKKKKKRTKKKEEEKRKNEKAVRLTK 186
E KK K++++K+ +++++ K++ E+ R K
Sbjct: 187 WELKKLKQQQQKREEERRKQRKKQQEEEERKQK 219
Score = 35.5 bits (82), Expect = 0.032
Identities = 26/115 (22%), Positives = 63/115 (54%), Gaps = 4/115 (3%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKK 61
+ K+ E+ + ++R K+K + + + ++ ++RT K +K ++ S K +
Sbjct: 116 REKEREEAELRQRLAKEKYEEWCRQKAQQAAKQRTPKHKKE-AAESASSSLSGSAKPERN 174
Query: 62 KEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKN 116
+ + K R +E + KK ++ ++K + + R++++KK+ EEE++K K +E +
Sbjct: 175 VSQEEAKKRLQEWELKKLKQQQQK---REEERRKQRKKQQEEEERKQKAEEAWQK 226
Score = 31.6 bits (72), Expect = 0.64
Identities = 24/101 (23%), Positives = 46/101 (45%), Gaps = 3/101 (2%)
Query: 105 KKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKK 164
+ + K + + + E K+A+ +KK + +EK K + KE EE E +++ K+K
Sbjct: 74 RSLKEVKLERQAQEAYENWLSAKQAQRQKKLQKLLEEKQKQEREKEREEAELRQRLAKEK 133
Query: 165 KK---RTKKKEEEKRKNEKAVRLTKLSAFGISGYLLQWIRN 202
+ R K ++ K++ K + SA + RN
Sbjct: 134 YEEWCRQKAQQAAKQRTPKHKKEAAESASSSLSGSAKPERN 174
>gnl|CDD|215521 PLN02967, PLN02967, kinase.
Length = 581
Score = 48.5 bits (115), Expect = 5e-06
Identities = 30/124 (24%), Positives = 56/124 (45%), Gaps = 20/124 (16%)
Query: 71 KEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEE----------KKKTKNKEKNKNKSRK 120
K + ++ R + K SRK+ + A +E KK T++ ++ K+
Sbjct: 27 GFNKFRGERWRLQNKFLLAAGSRKKIESALAVDEEPDENGAVSKKKPTRSVKRATKKTVV 86
Query: 121 EEEEKKKE----------AEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKK 170
E E +E A +K+ K+T ++ + K + + EEEK +KK +K++K K
Sbjct: 87 EISEPLEEGSELVVNEDAALDKESKKTPRRTRRKAAAASSDVEEEKTEKKVRKRRKVKKM 146
Query: 171 KEEE 174
E+
Sbjct: 147 DEDV 150
Score = 45.0 bits (106), Expect = 5e-05
Identities = 28/132 (21%), Positives = 55/132 (41%), Gaps = 13/132 (9%)
Query: 5 KEEKKKKKKRRTKKKEKNKNKSRKEEEE-----EKRTKKKEKNKKNKNKSRKEEEKKKRT 59
K + ++ R + K SRK+ E E+ + +KK +S K KK
Sbjct: 27 GFNKFRGERWRLQNKFLLAAGSRKKIESALAVDEEPDENGAVSKKKPTRSVKRATKKTVV 86
Query: 60 KKKEKNKNKNR--------KEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNK 111
+ E + + +++ KK RRT++K + +EEK ++ +++K K
Sbjct: 87 EISEPLEEGSELVVNEDAALDKESKKTPRRTRRKAAAASSDVEEEKTEKKVRKRRKVKKM 146
Query: 112 EKNKNKSRKEEE 123
+++ E E
Sbjct: 147 DEDVEDQGSESE 158
Score = 41.6 bits (97), Expect = 6e-04
Identities = 20/90 (22%), Positives = 37/90 (41%)
Query: 52 EEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNK 111
+EE + +K ++ K KK ++ E+ E+ + E +K + +
Sbjct: 59 DEEPDENGAVSKKKPTRSVKRATKKTVVEISEPLEEGSELVVNEDAALDKESKKTPRRTR 118
Query: 112 EKNKNKSRKEEEEKKKEAEEKKKKRTKKKE 141
K S EEEK ++ K++K K E
Sbjct: 119 RKAAAASSDVEEEKTEKKVRKRRKVKKMDE 148
Score = 41.2 bits (96), Expect = 8e-04
Identities = 28/127 (22%), Positives = 54/127 (42%), Gaps = 4/127 (3%)
Query: 5 KEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEK 64
KKK R K+ K E EE ++ +S+K + +R
Sbjct: 66 GAVSKKKPTRSVKRATKKTVVEISEPLEEGSELVVNEDAALDKESKKTPRRTRRKAAAAS 125
Query: 65 NKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEE 124
+ + K EKK +K+R+ KK +++ E + + EE ++ +N+S +E +
Sbjct: 126 SDVEEEKTEKKVRKRRKVKKMDEDVEDQGSESEVSDVEE----SEFVTSLENESEEELDL 181
Query: 125 KKKEAEE 131
+K + E+
Sbjct: 182 EKDDGED 188
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional.
Length = 880
Score = 48.5 bits (116), Expect = 5e-06
Identities = 47/183 (25%), Positives = 92/183 (50%), Gaps = 8/183 (4%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKK 61
K KE ++ K++ +KE + K + EEK + +E+ ++ K + + EEK K K+
Sbjct: 228 KEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKE 287
Query: 62 KEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKE 121
++ + K + ++ + +E K SR EE+ EE K+ + KE+ + +K+
Sbjct: 288 LKEKAEEYIKL-SEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKK 346
Query: 122 EEEKKKEAEEKKKK-------RTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEE 174
+E +K EE +++ + KK+E + K R EK +K+ ++ +K ++ EEE
Sbjct: 347 LKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEE 406
Query: 175 KRK 177
K
Sbjct: 407 ISK 409
Score = 47.8 bits (114), Expect = 9e-06
Identities = 48/187 (25%), Positives = 96/187 (51%), Gaps = 5/187 (2%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKK 61
K K++E ++ + + + + E+ EK K+ E+ K+ + KE E + +K+
Sbjct: 196 KEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKR 255
Query: 62 KEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKE 121
K + K + +E ++ KK + +EK K +E K++AEE K ++ E+ ++ R+
Sbjct: 256 KLEEKIRELEERIEELKKEIEELEEKVK---ELKELKEKAEEYIKLSEFYEEYLDELREI 312
Query: 122 EEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKK--KKRTKKKEEEKRKNE 179
E+ + EE + KE + + R EE +++ K+ +K+ + ++R + EE K K E
Sbjct: 313 EKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKE 372
Query: 180 KAVRLTK 186
+ RL K
Sbjct: 373 ELERLKK 379
Score = 47.8 bits (114), Expect = 9e-06
Identities = 38/182 (20%), Positives = 85/182 (46%), Gaps = 1/182 (0%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKK 61
K + E +K KR +E K K ++ EE + + + ++ EK+ + +
Sbjct: 175 KRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELE 234
Query: 62 KEKNKNKNRKEEKKKKKKRRTKKKEKNKN-KSRKEEKKKEAEEEKKKTKNKEKNKNKSRK 120
+ K + + ++E + + + K +EK + + R EE KKE EE ++K K ++ K K+ +
Sbjct: 235 ELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEE 294
Query: 121 EEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEK 180
+ + E + R +K ++ + EE K+ ++K+++ KK+ ++ +
Sbjct: 295 YIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRL 354
Query: 181 AV 182
Sbjct: 355 EE 356
Score = 42.0 bits (99), Expect = 5e-04
Identities = 39/181 (21%), Positives = 88/181 (48%), Gaps = 1/181 (0%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKK 61
K K EEK ++ + R ++ +K + ++ +E K K+K + ++ +E + R +
Sbjct: 254 KRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIE 313
Query: 62 KEKNKNKNRKEE-KKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRK 120
K ++ + +++ K+ K++ + K + +E +K EE +++ + E+ K K +
Sbjct: 314 KRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEE 373
Query: 121 EEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEK 180
E KK+ +K K+ E+ + + EEE K + + KK K+ ++ + +K
Sbjct: 374 LERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKK 433
Query: 181 A 181
A
Sbjct: 434 A 434
Score = 39.7 bits (93), Expect = 0.003
Identities = 36/167 (21%), Positives = 73/167 (43%), Gaps = 4/167 (2%)
Query: 18 KKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKK 77
KN + KE + +K + + +E++K+ + + + + + ++
Sbjct: 162 NAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELRE 221
Query: 78 K--KRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAE--EKK 133
+ K + KE + K EE +KE E + + E+ + + EE KKE E E+K
Sbjct: 222 ELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEK 281
Query: 134 KKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEK 180
K K+ ++ + K E E+ + ++ +KR + EEE E+
Sbjct: 282 VKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEE 328
Score = 38.9 bits (91), Expect = 0.005
Identities = 45/184 (24%), Positives = 87/184 (47%)
Query: 4 KKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKE 63
K+ E+K++K R+ ++ + K E + K ++ K + K K EE +K+ ++ E
Sbjct: 469 KEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYE 528
Query: 64 KNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEE 123
K K K K + + K ++ +K + K E +KK E E++ + ++ + + E
Sbjct: 529 KLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVE 588
Query: 124 EKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKAVR 183
E ++ +E + + E + E EE+E KK +++ K + E EKR E
Sbjct: 589 ELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKE 648
Query: 184 LTKL 187
L +L
Sbjct: 649 LEEL 652
Score = 38.9 bits (91), Expect = 0.005
Identities = 27/158 (17%), Positives = 72/158 (45%)
Query: 30 EEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNK 89
++ E K + K + + EK + + + K +++E ++ + + +
Sbjct: 158 DDYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELP 217
Query: 90 NKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRK 149
+ EK ++ +E ++ K + + K + E K++ EEK ++ ++ E+ K + +
Sbjct: 218 ELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEE 277
Query: 150 EEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKAVRLTKL 187
EE+ ++ K+ K+K ++ K E + ++ + K
Sbjct: 278 LEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKR 315
Score = 38.5 bits (90), Expect = 0.006
Identities = 43/170 (25%), Positives = 81/170 (47%), Gaps = 4/170 (2%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKK 61
K + EE ++K K + KEK + + E E+ + + +K ++ +E + +
Sbjct: 272 KKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEE-RI 330
Query: 62 KEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKE 121
KE + + R EE KKK K K+ E+ + + E+ K +EE ++ K + E
Sbjct: 331 KELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLT---PE 387
Query: 122 EEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKK 171
+ EK+ E EK K+ +++ E ++E K+ KK ++ K+ K K
Sbjct: 388 KLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGK 437
Score = 38.1 bits (89), Expect = 0.008
Identities = 49/197 (24%), Positives = 93/197 (47%), Gaps = 13/197 (6%)
Query: 5 KEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEK 64
KE ++K KK ++ EK + K +E+ + K + K+ K + + +E +KK +K+
Sbjct: 506 KELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKL 565
Query: 65 NKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEK------------KKEAEEEKKKTKNKE 112
++ + E K+ + + + + KE + +KE E E+K+ K E
Sbjct: 566 DELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLE 625
Query: 113 KNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKE 172
+ +K+ +E E +K EE +K ++ EK ++ EE EE + ++ R + +E
Sbjct: 626 EELDKAFEELAETEKRLEE-LRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEE 684
Query: 173 EEKRKNEKAVRLTKLSA 189
EKR+ E L KL
Sbjct: 685 LEKRREEIKKTLEKLKE 701
Score = 37.4 bits (87), Expect = 0.015
Identities = 47/201 (23%), Positives = 95/201 (47%), Gaps = 16/201 (7%)
Query: 3 NKKEEKKKKKKRRTKKKEKNKNKSR----KEEEEEKRTKKKEKNKKNKNKSRKEEEKKKR 58
N +E +KK ++ K++ K K K+E E+ KK+ + K EEE +
Sbjct: 516 NLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAEL 575
Query: 59 TKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNK---SRKEEKKKEAEEEKKKTKNKEKNK 115
K+ E+ ++ +E +++ K+ E + K E ++KE ++ +++ +
Sbjct: 576 LKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEEL 635
Query: 116 NKSRKEEEEKKKEAEEKKKKRTKKKEKNKNK---------SRKEEEEEEKKKKKKKKKKK 166
++ K EE +KE EE +KK ++++ + + + E EE +K++++ KK
Sbjct: 636 AETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKT 695
Query: 167 RTKKKEEEKRKNEKAVRLTKL 187
K KEE + + + L KL
Sbjct: 696 LEKLKEELEEREKAKKELEKL 716
Score = 36.2 bits (84), Expect = 0.038
Identities = 40/178 (22%), Positives = 86/178 (48%), Gaps = 5/178 (2%)
Query: 4 KKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRT-----KKKEKNKKNKNKSRKEEEKKKR 58
++ K + KK+ K K+ +E ++ K ++ + + + E K+
Sbjct: 405 EEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRKELLEEYTAELKRI 464
Query: 59 TKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKS 118
K+ ++ + K RK K+ ++ + KKE K ++ ++ + EEK K N E+ + K+
Sbjct: 465 EKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKA 524
Query: 119 RKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKR 176
+ E+ K+K + K + ++ KKE K + K++ E +KK + +++ KE E+
Sbjct: 525 EEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEEL 582
Score = 36.2 bits (84), Expect = 0.038
Identities = 47/193 (24%), Positives = 92/193 (47%), Gaps = 6/193 (3%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKK 61
K +E +K KK K K + KE EE+ + E+ +K + K +EK + K
Sbjct: 480 KELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKG 539
Query: 62 KEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKE 121
+ K+ K ++ ++ KKK +K+ ++ + E KE EE ++ + + + K +
Sbjct: 540 EIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEP 599
Query: 122 EEEKKKEAE------EKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEK 175
+ E + E+++K KK E+ +K+ +E E EK+ ++ +K+ + +KK E+
Sbjct: 600 FYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEE 659
Query: 176 RKNEKAVRLTKLS 188
E +LS
Sbjct: 660 EYEELREEYLELS 672
Score = 35.8 bits (83), Expect = 0.042
Identities = 56/205 (27%), Positives = 94/205 (45%), Gaps = 20/205 (9%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNK----------NKSRK 51
+ ++ ++ KKK + +K + + R E EE + KK+E + K K +
Sbjct: 335 EKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELE 394
Query: 52 EEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRK----------EEKKKEA 101
E EK K ++E +K R E KK+ K K E+ K K E +K+
Sbjct: 395 ELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRKELL 454
Query: 102 EEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKK 161
EE + K EK + ++E + +KE E +K K+ E K K E+ +E ++K KK
Sbjct: 455 EEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKK 514
Query: 162 KKKKKRTKKKEEEKRKNEKAVRLTK 186
++ KK EE ++ EK ++L
Sbjct: 515 YNLEELEKKAEEYEKLKEKLIKLKG 539
Score = 35.4 bits (82), Expect = 0.050
Identities = 38/190 (20%), Positives = 90/190 (47%), Gaps = 12/190 (6%)
Query: 4 KKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKE 63
+ ++ + R +K ++ + EE+ + +EK ++ + +K +E +KR ++ E
Sbjct: 299 SEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELE 358
Query: 64 KNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKE----------K 113
+ + + KK++ R KK+ + E++ +E E+ K++ + + K
Sbjct: 359 ERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELK 418
Query: 114 NKNKSRKEEEEKKKEAEEKKK--KRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKK 171
+ K K+ E+ K+A+ K R +E K + E ++ +K+ K+ +++ +K
Sbjct: 419 KEIKELKKAIEELKKAKGKCPVCGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKL 478
Query: 172 EEEKRKNEKA 181
+E R+ EK
Sbjct: 479 RKELRELEKV 488
Score = 35.0 bits (81), Expect = 0.073
Identities = 29/175 (16%), Positives = 78/175 (44%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKK 61
++ EE+ + + ++ + +E +E E + + E E+K+ K
Sbjct: 565 LDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKL 624
Query: 62 KEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKE 121
+E+ + + +K+ +K+ + K EE+ +E EE + + +E
Sbjct: 625 EEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEE 684
Query: 122 EEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKR 176
E++++E ++ +K ++ E+ + ++ E+ E+ ++ ++ ++K K K K
Sbjct: 685 LEKRREEIKKTLEKLKEELEEREKAKKELEKLEKALERVEELREKVKKYKALLKE 739
Score = 35.0 bits (81), Expect = 0.084
Identities = 54/186 (29%), Positives = 87/186 (46%), Gaps = 18/186 (9%)
Query: 9 KKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNK 68
KK++ R KK+ + E+E E+ K KE+ ++ + K + KK+ K K
Sbjct: 370 KKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEE---EISKITARIGELKKEIKELKK 426
Query: 69 NRKEEKKKKKK------------RRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKN 116
+E KK K K R+ +E R E++ KE EE+++K + + +
Sbjct: 427 AIEELKKAKGKCPVCGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELE 486
Query: 117 KSRKEEEE---KKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEE 173
K K+E E K+ AE+ K+ K K+ N + K+ EE EK K+K K K K ++
Sbjct: 487 KVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKK 546
Query: 174 EKRKNE 179
E K E
Sbjct: 547 ELEKLE 552
Score = 34.3 bits (79), Expect = 0.13
Identities = 30/164 (18%), Positives = 76/164 (46%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKK 61
+ +E KKK + K E + + +E E+ + + + + K + + K
Sbjct: 549 EKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELK 608
Query: 62 KEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKE 121
+ + + ++E KK ++ K E+ ++ E+ ++ EE +K ++E+ + +
Sbjct: 609 DAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEY 668
Query: 122 EEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKK 165
E ++ A + + +K + + K E+ +EE ++++K KK+
Sbjct: 669 LELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKE 712
Score = 33.5 bits (77), Expect = 0.22
Identities = 45/207 (21%), Positives = 91/207 (43%), Gaps = 15/207 (7%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTK- 60
K +K ++ ++ EK K + +E + + K + + K EE KK + K
Sbjct: 379 KRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKC 438
Query: 61 ----------KKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKN 110
+++ + E K+ +K+ + ++++ K + E +K ++E + K
Sbjct: 439 PVCGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKL 498
Query: 111 KEKNKNKSRKEEEEKKKEAEEKKKK----RTKKKEKNKNKSRKEEEEEEKKKKKKKKKKK 166
KE + EE+ KK EE +KK K++ K K + ++E +K ++ KKK
Sbjct: 499 KELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKL 558
Query: 167 RTKKKEEEKRKNEKAVRLTKLSAFGIS 193
+K+ ++ + E A L +L G
Sbjct: 559 AELEKKLDELEEELAELLKELEELGFE 585
Score = 33.1 bits (76), Expect = 0.29
Identities = 44/182 (24%), Positives = 85/182 (46%), Gaps = 4/182 (2%)
Query: 6 EEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKN 65
EE +K+ + K K KE EE++R +KE + K ++ E K + ++
Sbjct: 447 EEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQL- 505
Query: 66 KNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEE-EE 124
K +E+ KK +KK + K +++ K + E + K + ++ + K + E E+
Sbjct: 506 --KELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEK 563
Query: 125 KKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKAVRL 184
K E EE+ + K+ E+ +S +E EE K+ + + K E+E + EK ++
Sbjct: 564 KLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKK 623
Query: 185 TK 186
+
Sbjct: 624 LE 625
Score = 32.0 bits (73), Expect = 0.68
Identities = 45/192 (23%), Positives = 89/192 (46%), Gaps = 13/192 (6%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNK-------------NK 48
+ E++ + + E+ + ++EE + KKK K + + K
Sbjct: 309 LREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAK 368
Query: 49 SRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKT 108
++KEE ++ + + K KE ++ +K + ++E +K +R E KKE +E KK
Sbjct: 369 AKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAI 428
Query: 109 KNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRT 168
+ +K K K E +E ++ + + K K KE EE+E+K +K+ ++ ++
Sbjct: 429 EELKKAKGKCPVCGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKV 488
Query: 169 KKKEEEKRKNEK 180
KKE E K ++
Sbjct: 489 LKKESELIKLKE 500
Score = 30.8 bits (70), Expect = 1.6
Identities = 43/192 (22%), Positives = 86/192 (44%), Gaps = 18/192 (9%)
Query: 1 CKNKKEEKKKKKKRRTKKKEKNKN-------KSRKEEEEEKRTKKKEKNKKNKNK----- 48
++ +K+ ++ K+E + ++E ++ K E+ KK K K
Sbjct: 383 GLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCG 442
Query: 49 ------SRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAE 102
RKE ++ + K K EEK++K ++ ++ EK K + K KE
Sbjct: 443 RELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELA 502
Query: 103 EEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKK 162
E+ K+ + K K N E++ ++ E ++K + K + K+ K ++ EE +KK + +
Sbjct: 503 EQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELE 562
Query: 163 KKKKRTKKKEEE 174
KK +++ E
Sbjct: 563 KKLDELEEELAE 574
>gnl|CDD|233467 TIGR01554, major_cap_HK97, phage major capsid protein, HK97 family.
This model family represents the major capsid protein
component of the heads (capsids) of bacteriophage HK97,
phi-105, P27, and related phage. This model represents
one of several analogous families lacking detectable
sequence similarity. The gene encoding this component is
typically located in an operon encoding the small and
large terminase subunits, the portal protein and the
prohead or maturation protease [Mobile and
extrachromosomal element functions, Prophage functions].
Length = 384
Score = 47.7 bits (114), Expect = 5e-06
Identities = 32/160 (20%), Positives = 63/160 (39%), Gaps = 18/160 (11%)
Query: 73 EKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEK 132
K+ ++ KE K +EK EAEEEK + ++ ++ + + + E+
Sbjct: 1 LKELREALAELAKELRKLTE--DEKLAEAEEEKAEYDALKE-----EIDKLDAEIDRLEE 53
Query: 133 KKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKAVRLTKLSAFGI 192
+ K + EEEEE+ K + + + + ++ + KA+ S
Sbjct: 54 LLDELEAKPAASGEGGGGEEEEEEAKAEAAEFRAYLRGGDDALAEERKALSTGTDSD--- 110
Query: 193 SGYLL--QWIRNFL------SGWIQIVRVGTSTSEPIHIP 224
GYL+ ++ + S Q+ V +S + IP
Sbjct: 111 GGYLVPEEFSTEIIELLREYSPLRQLATVIPVSSGSLTIP 150
Score = 41.6 bits (98), Expect = 5e-04
Identities = 11/98 (11%), Positives = 36/98 (36%), Gaps = 1/98 (1%)
Query: 6 EEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKE-KNKKNKNKSRKEEEKKKRTKKKEK 64
+E ++ K+ K + E EE++ + K + +K + + ++ + + K
Sbjct: 2 KELREALAELAKELRKLTEDEKLAEAEEEKAEYDALKEEIDKLDAEIDRLEELLDELEAK 61
Query: 65 NKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAE 102
+++++ + + + R + E
Sbjct: 62 PAASGEGGGGEEEEEEAKAEAAEFRAYLRGGDDALAEE 99
Score = 39.3 bits (92), Expect = 0.003
Identities = 16/106 (15%), Positives = 42/106 (39%), Gaps = 5/106 (4%)
Query: 52 EEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNK 111
+E ++ + K K ++EK + + + + K + K + + + EE
Sbjct: 1 LKELREALAELAKELRKLTEDEKLAEAEEEKAEYDALKEEIDKLDAEIDRLEELLDELEA 60
Query: 112 EKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKK 157
+ + EE+++EA+ + + + + + EE+K
Sbjct: 61 KPAASGEGGGGEEEEEEAKAEAAEF-----RAYLRGGDDALAEERK 101
Score = 35.8 bits (83), Expect = 0.034
Identities = 17/104 (16%), Positives = 42/104 (40%), Gaps = 6/104 (5%)
Query: 29 EEEEEKRTKKKEKNKKNKNKSRK---EEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKK 85
+E E + ++ +K + EEEK + KE+ ++ + + + + +
Sbjct: 2 KELREALAELAKELRKLTEDEKLAEAEEEKAEYDALKEE---IDKLDAEIDRLEELLDEL 58
Query: 86 EKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEA 129
E S + +E EEE K + + + + ++++A
Sbjct: 59 EAKPAASGEGGGGEEEEEEAKAEAAEFRAYLRGGDDALAEERKA 102
Score = 35.4 bits (82), Expect = 0.053
Identities = 22/111 (19%), Positives = 41/111 (36%), Gaps = 16/111 (14%)
Query: 31 EEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKN 90
+E R E K+ RK E +K E +++K + K+E +K
Sbjct: 1 LKELREALAELAKE----LRKLTEDEKLA------------EAEEEKAEYDALKEEIDKL 44
Query: 91 KSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKE 141
+ + ++ +E + K + +EEE K + AE + R
Sbjct: 45 DAEIDRLEELLDELEAKPAASGEGGGGEEEEEEAKAEAAEFRAYLRGGDDA 95
Score = 31.9 bits (73), Expect = 0.52
Identities = 14/82 (17%), Positives = 35/82 (42%), Gaps = 1/82 (1%)
Query: 2 KNKKEE-KKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTK 60
K E +++K + K+E +K + + EE + + K + EEE+++
Sbjct: 21 DEKLAEAEEEKAEYDALKEEIDKLDAEIDRLEELLDELEAKPAASGEGGGGEEEEEEAKA 80
Query: 61 KKEKNKNKNRKEEKKKKKKRRT 82
+ + + R + ++R+
Sbjct: 81 EAAEFRAYLRGGDDALAEERKA 102
>gnl|CDD|237258 PRK12903, secA, preprotein translocase subunit SecA; Reviewed.
Length = 925
Score = 47.7 bits (114), Expect = 8e-06
Identities = 25/122 (20%), Positives = 50/122 (40%), Gaps = 4/122 (3%)
Query: 5 KEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEK 64
++ + ++ R K + + EE + +++KN K + K E ++ + +
Sbjct: 808 IDQIIESEEERLKALRIQREEMLMRPEELELINEEQKNLKQEIKLELSEIQEAEEEIQNI 867
Query: 65 NKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEE 124
N+NKN E K KK K K + +E K+ + K K K ++ +E
Sbjct: 868 NENKNEFVEFKND----PKKLNKLIIAKDVLIKLVISSDEIKQDEKTTKKKKKDLEKTDE 923
Query: 125 KK 126
+
Sbjct: 924 EA 925
Score = 45.8 bits (109), Expect = 3e-05
Identities = 26/152 (17%), Positives = 58/152 (38%), Gaps = 8/152 (5%)
Query: 23 KNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRT 82
N + ++ N + N +E + ++E+ K + E+ +
Sbjct: 777 NNPNAEKILIITEILSDGINNSDINDRPQELIDQIIESEEERLKALRIQREEMLMRPEEL 836
Query: 83 KKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEK 142
+ + + ++E K + +E ++ + + + N+NK E + K +K K K+
Sbjct: 837 ELINEEQKNLKQEIKLELSEIQEAEEEIQNINENK---NEFVEFKNDPKKLNKLIIAKDV 893
Query: 143 NKNK-----SRKEEEEEEKKKKKKKKKKKRTK 169
K++E+ KKKKK +K
Sbjct: 894 LIKLVISSDEIKQDEKTTKKKKKDLEKTDEEA 925
Score = 42.3 bits (100), Expect = 4e-04
Identities = 25/134 (18%), Positives = 50/134 (37%)
Query: 18 KKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKK 77
+ N + +E + E ++ R + E+ ++ + N+ +K K++
Sbjct: 791 LSDGINNSDINDRPQELIDQIIESEEERLKALRIQREEMLMRPEELELINEEQKNLKQEI 850
Query: 78 KKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRT 137
K ++ +E + E K E E K K K + E K+ ++T
Sbjct: 851 KLELSEIQEAEEEIQNINENKNEFVEFKNDPKKLNKLIIAKDVLIKLVISSDEIKQDEKT 910
Query: 138 KKKEKNKNKSRKEE 151
KK+K + EE
Sbjct: 911 TKKKKKDLEKTDEE 924
Score = 36.6 bits (85), Expect = 0.028
Identities = 21/123 (17%), Positives = 46/123 (37%)
Query: 64 KNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEE 123
N N + + + N ++ E+EEE+ K ++ + R EE
Sbjct: 777 NNPNAEKILIITEILSDGINNSDINDRPQELIDQIIESEEERLKALRIQREEMLMRPEEL 836
Query: 124 EKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKAVR 183
E E ++ K+ K + ++ +E + + K + + K KK + + ++
Sbjct: 837 ELINEEQKNLKQEIKLELSEIQEAEEEIQNINENKNEFVEFKNDPKKLNKLIIAKDVLIK 896
Query: 184 LTK 186
L
Sbjct: 897 LVI 899
>gnl|CDD|215698 pfam00078, RVT_1, Reverse transcriptase (RNA-dependent DNA
polymerase). A reverse transcriptase gene is usually
indicative of a mobile element such as a retrotransposon
or retrovirus. Reverse transcriptases occur in a variety
of mobile elements, including retrotransposons,
retroviruses, group II introns, bacterial msDNAs,
hepadnaviruses, and caulimoviruses.
Length = 194
Score = 45.4 bits (108), Expect = 1e-05
Identities = 26/124 (20%), Positives = 50/124 (40%), Gaps = 17/124 (13%)
Query: 186 KLSAFGISGYLLQWIRNFLSGWIQIVRVGTSTSEPIHIPSGCIQGGHMSGLLFSLFIN-- 243
L+AFG+ ++W + + G QG +S LLF+LF+N
Sbjct: 75 PLTAFGLPQRFIRWRTF--------SVLVNGNPGGRYEWRGLPQGSVLSPLLFNLFMNEL 126
Query: 244 --DIAEIFPGFNFWLFADDLKVALRVGGQREVDSMQSMLSRLYHWCSINKMELNIGKCMV 301
+ + FPG + +ADD+ + + + +Q +L + + ++LN K +
Sbjct: 127 LRPLRKRFPGLTYLRYADDILIFS-----KSPEELQEILEEVLEFLKELGLKLNPEKTKI 181
Query: 302 MTYH 305
Sbjct: 182 THSD 185
>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed.
Length = 1068
Score = 47.3 bits (113), Expect = 1e-05
Identities = 21/141 (14%), Positives = 78/141 (55%), Gaps = 4/141 (2%)
Query: 30 EEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNK 89
EE K ++ + K + +++ K ++ ++++N+ ++ ++ + +++ R ++E +
Sbjct: 583 GEETKPQEQPAPKAEAKPERQQDRRKPRQNNRRDRNERRDTRDNRTRREGREN-REENRR 641
Query: 90 NKSRKEEKKKEAEEEKKKTKN-KEKNKNKSRKEE--EEKKKEAEEKKKKRTKKKEKNKNK 146
N+ + +++ E E ++ K + +++ ++ E +++ +EK++ + + K N +
Sbjct: 642 NRRQAQQQTAETRESQQAEVTEKARTQDEQQQAPRRERQRRRNDEKRQAQQEAKALNVEE 701
Query: 147 SRKEEEEEEKKKKKKKKKKKR 167
+E E+E++ ++ + ++K+
Sbjct: 702 QSVQETEQEERVQQVQPRRKQ 722
Score = 46.2 bits (110), Expect = 3e-05
Identities = 27/151 (17%), Positives = 79/151 (52%), Gaps = 12/151 (7%)
Query: 17 KKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKK 76
+ K + + + E + E++ ++ K ++N + R E + R + + +NR+E ++
Sbjct: 585 ETKPQEQPAPKAEAKPERQQDRR-KPRQNNRRDR-NERRDTRDNRTRREGRENREENRRN 642
Query: 77 KKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKR 136
+++ + + E +++ + +K ++E+++ +E+ R+ +EK++ +E K
Sbjct: 643 RRQAQQQTAETRESQQAEVTEKARTQDEQQQAPRRERQ----RRRNDEKRQAQQEAKALN 698
Query: 137 TKKKEKNKNKSRKEEEEEEKKKKKKKKKKKR 167
+ +S +E E+EE+ ++ + ++K+R
Sbjct: 699 VE------EQSVQETEQEERVQQVQPRRKQR 723
Score = 45.0 bits (107), Expect = 6e-05
Identities = 22/137 (16%), Positives = 68/137 (49%), Gaps = 8/137 (5%)
Query: 4 KKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKE 63
+ K + K R + + K + +R++ E + T+ ++ ++R+E + +R +++
Sbjct: 591 QPAPKAEAKPERQQDRRKPRQNNRRDRNERRDTRDNRTRREG-RENREENRRNRRQAQQQ 649
Query: 64 KNKNKNRK--EEKKKKKKRRTKKKE--KNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSR 119
+ + + E +K + + +++ + + + R +EK++ +E K ++
Sbjct: 650 TAETRESQQAEVTEKARTQDEQQQAPRRERQRRRNDEKRQAQQEAKALNVE---EQSVQE 706
Query: 120 KEEEEKKKEAEEKKKKR 136
E+EE+ ++ + ++K+R
Sbjct: 707 TEQEERVQQVQPRRKQR 723
Score = 37.7 bits (88), Expect = 0.010
Identities = 19/128 (14%), Positives = 58/128 (45%), Gaps = 25/128 (19%)
Query: 52 EEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNK 111
EE K + + K + K +++ ++K ++ N + R E
Sbjct: 583 GEETKPQEQPAPKAEAKPERQQDRRKPRQ-------NNRRDRNER--------------- 620
Query: 112 EKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKK 171
+ + E ++ EE ++ R ++ ++ ++R+ ++ E +K + + ++++ ++
Sbjct: 621 --RDTRDNRTRREGRENREENRRNR-RQAQQQTAETRESQQAEVTEKARTQDEQQQAPRR 677
Query: 172 EEEKRKNE 179
E ++R+N+
Sbjct: 678 ERQRRRND 685
>gnl|CDD|178945 PRK00247, PRK00247, putative inner membrane protein translocase
component YidC; Validated.
Length = 429
Score = 46.8 bits (111), Expect = 1e-05
Identities = 29/141 (20%), Positives = 56/141 (39%), Gaps = 16/141 (11%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKS----------RKEEEEEKRTKKKEKNKKNKNKSRK 51
+ + EK+K+KK +N+ + E E K+T+ EKN+ K K
Sbjct: 291 RAQYREKQKEKKAFLWTLRRNRLRMIITPWRAPELHAENAEIKKTRTAEKNEAKARK--K 348
Query: 52 EEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNK 111
E +K+R ++E N+ ++ + R + K K K + + E ++N+
Sbjct: 349 EIAQKRRAAEREINREARQERAAAMARARARRAAVKAKKKGLID----ASPNEDTPSENE 404
Query: 112 EKNKNKSRKEEEEKKKEAEEK 132
E + + E + E
Sbjct: 405 ESKGSPPQVEATTTAEPNREP 425
Score = 45.6 bits (108), Expect = 3e-05
Identities = 24/138 (17%), Positives = 54/138 (39%), Gaps = 6/138 (4%)
Query: 27 RKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKE 86
+E+++EK+ ++N+ + + + K R EK + K R KK+
Sbjct: 294 YREKQKEKKAFLWTL-RRNRLRMIITPWRAPELHAENAEIKKTRTAEKNEAKAR--KKEI 350
Query: 87 KNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNK 146
K ++ + E +EA +E+ + + + R + KKK + E ++K
Sbjct: 351 AQKRRAAEREINREARQERAAAMARARAR---RAAVKAKKKGLIDASPNEDTPSENEESK 407
Query: 147 SRKEEEEEEKKKKKKKKK 164
+ E + ++
Sbjct: 408 GSPPQVEATTTAEPNREP 425
Score = 45.6 bits (108), Expect = 3e-05
Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 8/117 (6%)
Query: 68 KNRKEEKKKKKKRRTKKKEKNKNKS-----RKEEKKKEAEEEKKKTKNKEKNKNKSRKEE 122
+ + EK+K+KK +N+ + R E E E KK T+ EKN+ K+RK+E
Sbjct: 291 RAQYREKQKEKKAFLWTLRRNRLRMIITPWRAPELHAENAEIKK-TRTAEKNEAKARKKE 349
Query: 123 EEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNE 179
+K+ A E++ R ++E+ +R K KKK E+ +NE
Sbjct: 350 IAQKRRAAEREINREARQERAAAMARA--RARRAAVKAKKKGLIDASPNEDTPSENE 404
Score = 41.4 bits (97), Expect = 6e-04
Identities = 19/134 (14%), Positives = 48/134 (35%), Gaps = 8/134 (5%)
Query: 50 RKEEEKKKRTKKKEKNKNKNR------KEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEE 103
+E++K+K+ +N+ R + + + KK + K KK+ A++
Sbjct: 294 YREKQKEKKAFLWTLRRNRLRMIITPWRAPELHAENAEIKKTRTAEKNEAKARKKEIAQK 353
Query: 104 EKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKK 163
+ + + + R + + + + KKK ++ E ++ K
Sbjct: 354 RRAAEREINREARQERAAAMARAR--ARRAAVKAKKKGLIDASPNEDTPSENEESKGSPP 411
Query: 164 KKKRTKKKEEEKRK 177
+ + T E +
Sbjct: 412 QVEATTTAEPNREP 425
Score = 36.8 bits (85), Expect = 0.019
Identities = 17/96 (17%), Positives = 42/96 (43%), Gaps = 18/96 (18%)
Query: 104 EKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNK------------------N 145
E+K E ++ + + + ++K+ E+K T ++ + +
Sbjct: 274 ERKYPLTDEFKEHHAEQRAQYREKQKEKKAFLWTLRRNRLRMIITPWRAPELHAENAEIK 333
Query: 146 KSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKA 181
K+R E+ E K +KK+ +K+R ++E + ++
Sbjct: 334 KTRTAEKNEAKARKKEIAQKRRAAEREINREARQER 369
Score = 35.6 bits (82), Expect = 0.041
Identities = 17/99 (17%), Positives = 38/99 (38%), Gaps = 20/99 (20%)
Query: 93 RKEEKKKEAEEEKKKTKNKEKNKNKS----------RKEEEEKKKEAEEKKK--KRTKKK 140
++ + +++ +E+K +N+ + E E KK +K K KK+
Sbjct: 290 QRAQYREKQKEKKAFLWTLRRNRLRMIITPWRAPELHAENAEIKKTRTAEKNEAKARKKE 349
Query: 141 EKNK--------NKSRKEEEEEEKKKKKKKKKKKRTKKK 171
K N+ ++E + + ++ + KKK
Sbjct: 350 IAQKRRAAEREINREARQERAAAMARARARRAAVKAKKK 388
Score = 34.1 bits (78), Expect = 0.13
Identities = 14/89 (15%), Positives = 30/89 (33%), Gaps = 6/89 (6%)
Query: 4 KKEEKKKKKKRRTKKKE------KNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKK 57
K E K +KK+ K++ + + R R ++ K K +
Sbjct: 340 KNEAKARKKEIAQKRRAAEREINREARQERAAAMARARARRAAVKAKKKGLIDASPNEDT 399
Query: 58 RTKKKEKNKNKNRKEEKKKKKKRRTKKKE 86
++ +E + + E + R +E
Sbjct: 400 PSENEESKGSPPQVEATTTAEPNREPSQE 428
Score = 29.8 bits (67), Expect = 3.1
Identities = 13/88 (14%), Positives = 28/88 (31%), Gaps = 23/88 (26%)
Query: 119 RKEEEEKKKEAEEKKKKRTKKK-------------------EKNKNKSRKEEEEEEKKKK 159
R + EK+KE + + + K + K E + KK+
Sbjct: 291 RAQYREKQKEKKAFLWTLRRNRLRMIITPWRAPELHAENAEIKKTRTAEKNEAKARKKEI 350
Query: 160 KKKKKKKRTK----KKEEEKRKNEKAVR 183
+K++ + ++E +A
Sbjct: 351 AQKRRAAEREINREARQERAAAMARARA 378
>gnl|CDD|115057 pfam06375, BLVR, Bovine leukaemia virus receptor (BLVR). This
family consists of several bovine specific leukaemia
virus receptors which are thought to function as
transmembrane proteins, although their exact function is
unknown.
Length = 561
Score = 47.0 bits (111), Expect = 1e-05
Identities = 49/213 (23%), Positives = 88/213 (41%), Gaps = 41/213 (19%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKE------------EEEEKRTKKKEKNKKNKNK- 48
K+K+E+KK++K++R +++ + E EE + +++ K+ N
Sbjct: 96 KDKREKKKREKEKRGRRRHHSLGTESDEDIAPAQMVDIVTEEMPENALPSDEDDKDPNDP 155
Query: 49 --------------SRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRK 94
S K +K R + K+ K +KK K+ KK++K K K R
Sbjct: 156 YRALDIDLDKPLADSEKLPVQKHRNAETSKSPEKGDVPAVEKKSKKPKKKEKKEKEKERD 215
Query: 95 EEKKKEAEEEKK--------------KTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKK 140
++KKKE E K + E + + + E K + + K
Sbjct: 216 KDKKKEVEGFKSLLLALDDSPASAASVAEADEASLANTVSGTAPDSEPDEPKDAEAEETK 275
Query: 141 EKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEE 173
+ K+K +K+ +E+E+KKKKKK R +
Sbjct: 276 KSPKHKKKKQRKEKEEKKKKKKHHHHRCHHSDG 308
Score = 46.6 bits (110), Expect = 2e-05
Identities = 45/212 (21%), Positives = 90/212 (42%), Gaps = 34/212 (16%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKR----------TKKKEKNKKNKNKSRK 51
+ + E+ K++KK+R K+K + E ++ T++ +N ++ K
Sbjct: 91 RQRLEKDKREKKKREKEKRGRRRHHSLGTESDEDIAPAQMVDIVTEEMPENALPSDEDDK 150
Query: 52 EEEKKKR------------TKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKK 99
+ R ++K K++N + K +K ++K+K +KE+K+K
Sbjct: 151 DPNDPYRALDIDLDKPLADSEKLPVQKHRNAETSKSPEKGDVPAVEKKSKKPKKKEKKEK 210
Query: 100 EAEEEKKKTKNKEKNKN------------KSRKEEEEKKKEAEEKKKKRTKKKEKNKNKS 147
E E +K K K E K+ S E +E + ++ K+
Sbjct: 211 EKERDKDKKKEVEGFKSLLLALDDSPASAASVAEADEASLANTVSGTAPDSEPDEPKDAE 270
Query: 148 RKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNE 179
+E ++ K KKKK++K+K KKK+++ +
Sbjct: 271 AEETKKSPKHKKKKQRKEKEEKKKKKKHHHHR 302
Score = 43.5 bits (102), Expect = 1e-04
Identities = 26/137 (18%), Positives = 59/137 (43%)
Query: 18 KKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKK 77
+K +N S+ E+ + +K+ K K + +++E+++ + KKKE K+
Sbjct: 176 QKHRNAETSKSPEKGDVPAVEKKSKKPKKKEKKEKEKERDKDKKKEVEGFKSLLLALDDS 235
Query: 78 KKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRT 137
E ++ + E + K+ E + K + ++KK+ E+++KK+
Sbjct: 236 PASAASVAEADEASLANTVSGTAPDSEPDEPKDAEAEETKKSPKHKKKKQRKEKEEKKKK 295
Query: 138 KKKEKNKNKSRKEEEEE 154
KK ++ E+
Sbjct: 296 KKHHHHRCHHSDGGAEQ 312
Score = 42.0 bits (98), Expect = 4e-04
Identities = 40/152 (26%), Positives = 62/152 (40%), Gaps = 6/152 (3%)
Query: 7 EKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNK 66
EK +K R + K+ K E+K K K+K KK K K R +++KK+ K
Sbjct: 171 EKLPVQKHRNAETSKSPEKGDVPAVEKKSKKPKKKEKKEKEKERDKDKKKEVEGFKSLLL 230
Query: 67 NKNRKEEKKKKKKRRTKKKEKN------KNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRK 120
+ + N + E K EAEE KK K+K+K + K ++
Sbjct: 231 ALDDSPASAASVAEADEASLANTVSGTAPDSEPDEPKDAEAEETKKSPKHKKKKQRKEKE 290
Query: 121 EEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEE 152
E+++KKK + E+ EEE
Sbjct: 291 EKKKKKKHHHHRCHHSDGGAEQPVQNGAVEEE 322
Score = 42.0 bits (98), Expect = 5e-04
Identities = 37/136 (27%), Positives = 67/136 (49%), Gaps = 9/136 (6%)
Query: 51 KEEEKKKRTKKKEKNKNKNRKEEKKKKKKRR-----TKKKEKNKNKSRKEEKKKEAEEEK 105
K EE+++ ++ EK+K + +K EK+K+ +RR T+ E + +E E
Sbjct: 83 KLEEERRHRQRLEKDKREKKKREKEKRGRRRHHSLGTESDEDIAPAQMVDIVTEEMPENA 142
Query: 106 KKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEE----EKKKKKK 161
+ +K+ N + + + +K +K +N S+ E+ + EKK KK
Sbjct: 143 LPSDEDDKDPNDPYRALDIDLDKPLADSEKLPVQKHRNAETSKSPEKGDVPAVEKKSKKP 202
Query: 162 KKKKKRTKKKEEEKRK 177
KKK+K+ K+KE +K K
Sbjct: 203 KKKEKKEKEKERDKDK 218
Score = 38.1 bits (88), Expect = 0.007
Identities = 38/152 (25%), Positives = 75/152 (49%), Gaps = 8/152 (5%)
Query: 28 KEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEK 87
K EEE + ++ EK+K+ K K+ EK+KR +++ + E+ + +E
Sbjct: 83 KLEEERRHRQRLEKDKREK----KKREKEKRGRRRHHSLGTESDEDIAPAQMVDIVTEEM 138
Query: 88 NKNKSRKEEKKKEAEEEKKKTK-NKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNK 146
+N +E K+ + + + +K S K +K + AE K + +K
Sbjct: 139 PENALPSDEDDKDPNDPYRALDIDLDKPLADSEKLPVQKHRNAETSK---SPEKGDVPAV 195
Query: 147 SRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKN 178
+K ++ ++K+KK+K+K++ + KKKE E K+
Sbjct: 196 EKKSKKPKKKEKKEKEKERDKDKKKEVEGFKS 227
Score = 33.5 bits (76), Expect = 0.24
Identities = 24/125 (19%), Positives = 53/125 (42%), Gaps = 4/125 (3%)
Query: 4 KKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKE 63
+K + +K+ K K+K K + KE +++K+ + + + E
Sbjct: 188 EKGDVPAVEKKSKKPKKKEKKEKEKERDKDKKKEVEGFKSLLLALDDSPASAASVAEADE 247
Query: 64 KNK----NKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSR 119
+ + + + + K ++ K K +K++++KE EE+KKK K+ + S
Sbjct: 248 ASLANTVSGTAPDSEPDEPKDAEAEETKKSPKHKKKKQRKEKEEKKKKKKHHHHRCHHSD 307
Query: 120 KEEEE 124
E+
Sbjct: 308 GGAEQ 312
Score = 32.0 bits (72), Expect = 0.59
Identities = 26/115 (22%), Positives = 50/115 (43%), Gaps = 19/115 (16%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNK----------------SRKEEEEEKRTKKKEKNKKN 45
K KK+EKK+K+K R K K+K S E +E +
Sbjct: 201 KPKKKEKKEKEKERDKDKKKEVEGFKSLLLALDDSPASAASVAEADEASLANTVSGTAPD 260
Query: 46 KNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKE 100
++ + + TKK K+K +K+++K+K++++ KKK + + ++
Sbjct: 261 SEPDEPKDAEAEETKKSPKHK---KKKQRKEKEEKKKKKKHHHHRCHHSDGGAEQ 312
Score = 28.9 bits (64), Expect = 6.6
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 152 EEEEKKKKKKKKKKKRTKKKEEEKRKNEK 180
EEE + +++ +K K+ KK+E+EKR +
Sbjct: 85 EEERRHRQRLEKDKREKKKREKEKRGRRR 113
>gnl|CDD|215641 PLN03237, PLN03237, DNA topoisomerase 2; Provisional.
Length = 1465
Score = 47.2 bits (112), Expect = 1e-05
Identities = 37/185 (20%), Positives = 73/185 (39%), Gaps = 4/185 (2%)
Query: 5 KEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEK 64
KE+ K ++ R ++ + +S ++ ++ KK KK K+ + E ++
Sbjct: 1170 KEDAKAEEAREKLQRAAARGESGAAKKVSRQAPKKPAPKKTTKKASESETTEETYGSSAM 1229
Query: 65 NKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEE 124
N E K K + KKK K ++EE + +++ N + +S K EE
Sbjct: 1230 ETE-NVAEVVKPKGRAGAKKKAPAAAKEKEEEDEILDLKDRLAAYNLDSAPAQSAKMEET 1288
Query: 125 KKKEAEEKKKKRTKKKEKNKNKSRKEEEEEE---KKKKKKKKKKKRTKKKEEEKRKNEKA 181
K + R K S ++++++ + ++ KKK +K +K K
Sbjct: 1289 VKAVPARRAAARKKPLASVSVISDSDDDDDDFAVEVSLAERLKKKGGRKPAAANKKAAKP 1348
Query: 182 VRLTK 186
K
Sbjct: 1349 PAAAK 1353
Score = 40.6 bits (95), Expect = 0.002
Identities = 27/142 (19%), Positives = 54/142 (38%), Gaps = 9/142 (6%)
Query: 39 KEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKK 98
KE +K +K ++ EE ++K + + ++ K+ ++ K K +K KK
Sbjct: 1163 KELDKLDKEDAKAEEAREKLQRAAARGESGAAKKVSRQAPK---------KPAPKKTTKK 1213
Query: 99 KEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKK 158
E ++T + ++ E + K A KKK KEK + + ++
Sbjct: 1214 ASESETTEETYGSSAMETENVAEVVKPKGRAGAKKKAPAAAKEKEEEDEILDLKDRLAAY 1273
Query: 159 KKKKKKKKRTKKKEEEKRKNEK 180
+ K +E K +
Sbjct: 1274 NLDSAPAQSAKMEETVKAVPAR 1295
Score = 37.9 bits (88), Expect = 0.012
Identities = 32/188 (17%), Positives = 55/188 (29%), Gaps = 10/188 (5%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKN-------KSRKEEE 54
+ + KK ++ KK K + E E + +N K R +
Sbjct: 1188 RGESGAAKKVSRQAPKKPAPKKTTKKASESETTEETYGSSAMETENVAEVVKPKGRAGAK 1247
Query: 55 KKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKN 114
KK KEK + + K + K + K A + K
Sbjct: 1248 KKAPAAAKEKEEEDEILDLKDRLAAYNLDSAPAQSAKMEETVKAVPARRAAARKKPLASV 1307
Query: 115 KNKSRKEEEEKKKEAEEKKKKRTKKKEKNK---NKSRKEEEEEEKKKKKKKKKKKRTKKK 171
S ++++ E +R KKK K + + KK+ + K
Sbjct: 1308 SVISDSDDDDDDFAVEVSLAERLKKKGGRKPAAANKKAAKPPAAAKKRGPATVQSGQKLL 1367
Query: 172 EEEKRKNE 179
E + E
Sbjct: 1368 TEMLKPAE 1375
Score = 33.7 bits (77), Expect = 0.20
Identities = 24/111 (21%), Positives = 44/111 (39%), Gaps = 18/111 (16%)
Query: 95 EEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEE-- 152
+E K E +K + + ++ + KK + KK KK K ++S EE
Sbjct: 1170 KEDAKAEEAREKLQRAAARGESGA-----AKKVSRQAPKKPAPKKTTKKASESETTEETY 1224
Query: 153 -----------EEEKKKKKKKKKKKRTKKKEEEKRKNEKAVRLTKLSAFGI 192
E K K + KKK +E++ ++E +L+A+ +
Sbjct: 1225 GSSAMETENVAEVVKPKGRAGAKKKAPAAAKEKEEEDEILDLKDRLAAYNL 1275
Score = 31.8 bits (72), Expect = 0.92
Identities = 20/100 (20%), Positives = 40/100 (40%), Gaps = 13/100 (13%)
Query: 96 EKKKEAEEEKKKTKNKE------KNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRK 149
+K E+ KKT K K + +++ +AEE ++K + + ++ +
Sbjct: 1136 DKLNIEVEDLKKTTPKSLWLKDLDALEKELDKLDKEDAKAEEAREKLQRAAARGESGA-- 1193
Query: 150 EEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKAVRLTKLSA 189
KK ++ KK KK ++ ++E SA
Sbjct: 1194 -----AKKVSRQAPKKPAPKKTTKKASESETTEETYGSSA 1228
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC,
primarily archaeal type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. It is found
in a single copy and is homodimeric in prokaryotes, but
six paralogs (excluded from this family) are found in
eukarotes, where SMC proteins are heterodimeric. This
family represents the SMC protein of archaea and a few
bacteria (Aquifex, Synechocystis, etc); the SMC of other
bacteria is described by TIGR02168. The N- and
C-terminal domains of this protein are well conserved,
but the central hinge region is skewed in composition
and highly divergent [Cellular processes, Cell division,
DNA metabolism, Chromosome-associated proteins].
Length = 1164
Score = 46.6 bits (111), Expect = 2e-05
Identities = 36/195 (18%), Positives = 87/195 (44%), Gaps = 4/195 (2%)
Query: 7 EKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNK 66
E++ +++R+ + K + KEE E+ R + +E +K+ +E K +K EK K
Sbjct: 342 EREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFA---ETRDELKDYREKLEKLK 398
Query: 67 NKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKK 126
+ E K++ + + + + ++ + E + + + ++++K K++E K
Sbjct: 399 RE-INELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKL 457
Query: 127 KEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKAVRLTK 186
++ K ++ K + + E+E K +++ + + + + EE R + K
Sbjct: 458 EQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLK 517
Query: 187 LSAFGISGYLLQWIR 201
S G+ G + Q
Sbjct: 518 ASIQGVHGTVAQLGS 532
Score = 41.6 bits (98), Expect = 7e-04
Identities = 26/179 (14%), Positives = 76/179 (42%), Gaps = 6/179 (3%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKK 61
K K+ ++ ++ + ++E KS +E E + + +E +K + +
Sbjct: 734 KLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEED----LHKLEEALNDLEARLS 789
Query: 62 KEKNKNKNRKEEKKKKKKRRTKKKEKNKNKS-RKEEKKKEAEEEKKKTKNKEKNKNKSRK 120
+ + K +++ R + + + + + +KE E++ + +++ K +
Sbjct: 790 HSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQI 849
Query: 121 EEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNE 179
+ EK+ E KK+ +++ + ++ + E KK++ + + +E E++ E
Sbjct: 850 KSIEKEIENLNGKKEELEEELEEL-EAALRDLESRLGDLKKERDELEAQLRELERKIEE 907
Score = 41.6 bits (98), Expect = 8e-04
Identities = 33/180 (18%), Positives = 81/180 (45%), Gaps = 7/180 (3%)
Query: 1 CKNKKEEKKKKKKR---RTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKK 57
+ + E K + K R ++ E++ +K + + + + + + + K EE+
Sbjct: 749 LEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVS 808
Query: 58 RTKKK----EKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEK 113
R + + E+ N+ E++ +K+ + ++++ K + + +KE E K + E+
Sbjct: 809 RIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEE 868
Query: 114 NKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEE 173
+ + + + KK+R + + + + RK EE E + +KK+K+ + K E
Sbjct: 869 ELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEA 928
Score = 41.2 bits (97), Expect = 9e-04
Identities = 44/179 (24%), Positives = 89/179 (49%), Gaps = 13/179 (7%)
Query: 9 KKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNK 68
K+K+ +K+ + + EEE EK T++ + +K R EE ++ + +K K+
Sbjct: 230 KEKEALERQKEAIERQLASLEEELEKLTEEISELEK-----RLEEIEQLLEELNKKIKDL 284
Query: 69 NRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKE 128
+E+ + K+K + E + EK++E E+ +++ E +K E EE ++E
Sbjct: 285 GEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELERE 344
Query: 129 AEEKKKKRTK--------KKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNE 179
EE++K+R K K+E ++ EE ++E + + + K R K ++ ++ NE
Sbjct: 345 IEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINE 403
Score = 40.8 bits (96), Expect = 0.001
Identities = 35/199 (17%), Positives = 90/199 (45%), Gaps = 17/199 (8%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKK 61
+N+ +E ++ ++K + + + + E+EE++ K++ + + S ++E + +++
Sbjct: 701 ENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSEL 760
Query: 62 KEKNKNKNRKEEKKKK-----------------KKRRTKKKEKNKNKSRKEEKKKEAEEE 104
KE EE K + + + + + SR E + +E E++
Sbjct: 761 KELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQK 820
Query: 105 KKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKK 164
+ +++ K +E +E++ + +E+ K K+ E K + EEE E+ + +
Sbjct: 821 LNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDL 880
Query: 165 KKRTKKKEEEKRKNEKAVR 183
+ R ++E+ + E +R
Sbjct: 881 ESRLGDLKKERDELEAQLR 899
Score = 40.4 bits (95), Expect = 0.002
Identities = 35/175 (20%), Positives = 77/175 (44%), Gaps = 7/175 (4%)
Query: 6 EEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKN 65
EK+ ++ + + K + KS ++E E KK+E ++ + + + R +K
Sbjct: 831 LEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKE 890
Query: 66 KNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEK 125
+++ + ++ ++K + + K + R E K + E + + E K EE +
Sbjct: 891 RDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEA--LEEELSEIEDPKGEDEEIPE 948
Query: 126 KKEAEEKKKKRTKKKEKNKNK-----SRKEEEEEEKKKKKKKKKKKRTKKKEEEK 175
++ + E + ++ E+ +E EE K+ + K+KR K +EE K
Sbjct: 949 EELSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERK 1003
Score = 38.9 bits (91), Expect = 0.005
Identities = 33/189 (17%), Positives = 85/189 (44%), Gaps = 5/189 (2%)
Query: 6 EEKKKKKKRRTKKKEKNKNKSR---KEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKK 62
+ KK+K ++ E+N + E+ ++ ++E+ K + ++ +E+++ +
Sbjct: 169 DRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYEL 228
Query: 63 EKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAE--EEKKKTKNKEKNKNKSRK 120
K K ++++ +++ + ++E K E +K E E+ + NK+ +
Sbjct: 229 LKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEE 288
Query: 121 EEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEK 180
+ K+K E + + + ++ + + E+ EE K + + K + +E E+ E+
Sbjct: 289 QLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEE 348
Query: 181 AVRLTKLSA 189
R KL+
Sbjct: 349 RKRRDKLTE 357
Score = 38.5 bits (90), Expect = 0.007
Identities = 30/185 (16%), Positives = 79/185 (42%), Gaps = 6/185 (3%)
Query: 8 KKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKN 67
+++ K E + ++R EE EE K +E + + + + + + +
Sbjct: 747 SSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEE 806
Query: 68 KNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKK 127
+R E + ++ +++ + K E++ +E +E++ K + + E KK
Sbjct: 807 VSRIEARLREIEQKLNRLTLEKEYL--EKEIQELQEQRIDLKEQ-IKSIEKEIENLNGKK 863
Query: 128 EAEEKKKKRTKKKEKNKNKSR---KEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKAVRL 184
E E++ + + ++ K+E +E + + ++ ++K + + EK++ +
Sbjct: 864 EELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELK 923
Query: 185 TKLSA 189
KL A
Sbjct: 924 AKLEA 928
Score = 37.4 bits (87), Expect = 0.015
Identities = 36/199 (18%), Positives = 88/199 (44%), Gaps = 14/199 (7%)
Query: 5 KEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEK 64
+E ++ ++ EK + R E EK + + K+ + E K+K +++K
Sbjct: 180 EEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQK 239
Query: 65 NKNKNRKEEKKKKKKRRTKK-KEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEE- 122
+ + +++ ++ T++ E K E+ +E ++ K +E+ + K + E
Sbjct: 240 EAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGEL 299
Query: 123 -----------EEKKKEAEEKKKKRTK-KKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKK 170
EK++E E+ +++ K + E +K + EE E E ++++K++ K +
Sbjct: 300 EAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEY 359
Query: 171 KEEEKRKNEKAVRLTKLSA 189
E ++ + L ++
Sbjct: 360 AELKEELEDLRAELEEVDK 378
Score = 37.0 bits (86), Expect = 0.020
Identities = 35/180 (19%), Positives = 87/180 (48%), Gaps = 5/180 (2%)
Query: 4 KKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKE 63
+EE +K + ++ +++ + + EE K+ K + ++ + K + E + + +
Sbjct: 249 LEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLER 308
Query: 64 KNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEE 123
K R E + +++ + E +K + EE ++E EEE+K+ + + ++E E
Sbjct: 309 SIAEKER-ELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELE 367
Query: 124 EKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKAVR 183
+ + E EE K+ + +++ K E+ EK K++ + K+ + +EE ++ + +
Sbjct: 368 DLRAELEEVDKEFAETRDELK----DYREKLEKLKREINELKRELDRLQEELQRLSEELA 423
Score = 36.6 bits (85), Expect = 0.026
Identities = 30/185 (16%), Positives = 77/185 (41%), Gaps = 11/185 (5%)
Query: 10 KKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSR-KEEEKKKRTKKKEKNKNK 68
+ + RR + + ++ + + +KE + + + + KE ++ +
Sbjct: 694 QSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEI 753
Query: 69 NRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAE--EEKKKTKNKEKNK-NKSRKEEEEK 125
+ + K+ + R ++ E++ +K + EA + E +K + E +
Sbjct: 754 ENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEAR 813
Query: 126 KKEAEEKKKKRTKKKE----KNKNKSRKEEEEEEKKKKKKKKK---KKRTKKKEEEKRKN 178
+E E+K + T +KE + + + + +E+ K +K+ + ++ EEE +
Sbjct: 814 LREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEEL 873
Query: 179 EKAVR 183
E A+R
Sbjct: 874 EAALR 878
Score = 34.3 bits (79), Expect = 0.13
Identities = 30/173 (17%), Positives = 75/173 (43%), Gaps = 1/173 (0%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKK 61
+K EE+ + + R ++ E+ N+ E+E ++ ++ + ++ K + + +K+
Sbjct: 800 LSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENL 859
Query: 62 KEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKE-EKKKEAEEEKKKTKNKEKNKNKSRK 120
K + + E+ + R + + + K R E E + E K + + K + R
Sbjct: 860 NGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRL 919
Query: 121 EEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEE 173
E + K EA E++ + + + +EE E + + ++ ++ + E
Sbjct: 920 SELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRALEP 972
Score = 33.9 bits (78), Expect = 0.17
Identities = 31/160 (19%), Positives = 67/160 (41%), Gaps = 2/160 (1%)
Query: 19 KEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKK 78
EK + EE K + +K + +E E++++ + K + KEE + +
Sbjct: 311 AEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLR 370
Query: 79 KRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAE-EKKKKRT 137
++ +K ++R E K + EK K + E + R +EE ++ E
Sbjct: 371 -AELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAI 429
Query: 138 KKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRK 177
E N+ +E+E++ + KK++ K ++ + +
Sbjct: 430 AGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQ 469
Score = 33.9 bits (78), Expect = 0.17
Identities = 37/199 (18%), Positives = 87/199 (43%), Gaps = 13/199 (6%)
Query: 4 KKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTK--K 61
+ E + ++ R + K + S + E + E +++ + SRK E +K + +
Sbjct: 670 RSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLE 729
Query: 62 KEKNKNKNRKEE-----KKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKN 116
+E+ K K R EE +++ K E + ++R EE +++ + ++ + E +
Sbjct: 730 QEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLS 789
Query: 117 KSRKEEEEKKKEAEEKKKKRTKK------KEKNKNKSRKEEEEEEKKKKKKKKKKKRTKK 170
SR E + + E++ R + ++ N+ KE E+E ++ ++++ + +
Sbjct: 790 HSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQI 849
Query: 171 KEEEKRKNEKAVRLTKLSA 189
K EK + +L
Sbjct: 850 KSIEKEIENLNGKKEELEE 868
Score = 33.5 bits (77), Expect = 0.23
Identities = 40/180 (22%), Positives = 76/180 (42%), Gaps = 23/180 (12%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKK----EKNKKNKNKSRKEEEKKK 57
+ ++ + K++ K K+ E K + EEE + + E + K R E E +
Sbjct: 839 QEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQL 898
Query: 58 RTKKKEKNKNKNRKEEKKKKKKRRTKKKE-KNKNKSRKEEKKKEAEEEKKKTKNKEK-NK 115
R +++ + + + E+K+K+ K E + S E+ K E EE ++ + E
Sbjct: 899 RELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQA 958
Query: 116 NKSRKE-----------------EEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKK 158
R E EE K+ E K+K+ ++E+ R EE E++K++
Sbjct: 959 ELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKRE 1018
Score = 30.8 bits (70), Expect = 1.7
Identities = 32/180 (17%), Positives = 77/180 (42%), Gaps = 6/180 (3%)
Query: 3 NKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKK 62
NKK + ++++ K++ + ++ E +K+ + + + + K E + + +
Sbjct: 278 NKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAE 337
Query: 63 EKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEE 122
+ + +EE+K++ K + E K E+ + E EE K+ R++
Sbjct: 338 IEELEREIEEERKRRDKLTEEYAEL---KEELEDLRAELEEVDKEFAETRDELKDYREKL 394
Query: 123 EEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKK---RTKKKEEEKRKNE 179
E+ K+E E K++ + +E+ + S + + + K + + K E +K E
Sbjct: 395 EKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQE 454
>gnl|CDD|214395 CHL00204, ycf1, Ycf1; Provisional.
Length = 1832
Score = 46.6 bits (111), Expect = 2e-05
Identities = 24/89 (26%), Positives = 48/89 (53%)
Query: 64 KNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEE 123
N+N N+K +KKK + +K+ + ++R +E+K+ A + + ++ ++K +S +
Sbjct: 1494 GNENVNKKINQKKKGFIPSNEKKSIEIENRNQEEKEPAGQGELESDKEKKGNLESVLSNQ 1553
Query: 124 EKKKEAEEKKKKRTKKKEKNKNKSRKEEE 152
EK E + + K+K K + KS E E
Sbjct: 1554 EKNIEEDYAESDIKKRKNKKQYKSNTEAE 1582
Score = 43.9 bits (104), Expect = 1e-04
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 87 KNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNK 146
+N NK ++KK +KK+ + +N+N+ KE + + +K+KK + + +
Sbjct: 1496 ENVNKKINQKKKGFIPSNEKKSI-EIENRNQEEKEPAGQGELESDKEKKGNLESVLSNQE 1554
Query: 147 SRKEEEEEEKKKKKKKKKKKRTKKKEEE 174
EE+ E KK+K KK+ E E
Sbjct: 1555 KNIEEDYAESDIKKRKNKKQYKSNTEAE 1582
Score = 40.1 bits (94), Expect = 0.003
Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 11/89 (12%)
Query: 44 KNKNKSRKEEEKKK-----RTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKN------KS 92
N+N ++K +KKK KK + +N+N++E++ + KEK N
Sbjct: 1494 GNENVNKKINQKKKGFIPSNEKKSIEIENRNQEEKEPAGQGELESDKEKKGNLESVLSNQ 1553
Query: 93 RKEEKKKEAEEEKKKTKNKEKNKNKSRKE 121
K ++ AE + KK KNK++ K+ + E
Sbjct: 1554 EKNIEEDYAESDIKKRKNKKQYKSNTEAE 1582
Score = 38.2 bits (89), Expect = 0.008
Identities = 26/107 (24%), Positives = 47/107 (43%), Gaps = 16/107 (14%)
Query: 3 NKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKK 62
NKK +KKK + +K+ + ++R +EE KE + + +S KE++ +
Sbjct: 1499 NKKINQKKKGFIPSNEKKSIEIENRNQEE-------KEPAGQGELESDKEKKGNLESVLS 1551
Query: 63 EKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTK 109
+ KN + KKR+ KK+ K+ EAE + +
Sbjct: 1552 NQEKNIEEDYAESDIKKRKNKKQYKS---------NTEAELDFFLKR 1589
Score = 35.8 bits (83), Expect = 0.050
Identities = 17/89 (19%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 8 KKKKKKRRTKKKEKNKNKSRKEEEEE-KRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNK 66
+ ++ +K+K S +++ E + ++EK + + ++EKK + N+
Sbjct: 1494 GNENVNKKINQKKKGFIPSNEKKSIEIENRNQEEKEPAGQGELESDKEKKGNLESVLSNQ 1553
Query: 67 NKNRKEEKKKKKKRRTKKKEKNKNKSRKE 95
KN +E+ + ++ K K++ K+ + E
Sbjct: 1554 EKNIEEDYAESDIKKRKNKKQYKSNTEAE 1582
Score = 30.8 bits (70), Expect = 1.5
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 9/61 (14%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRK--------EEEEEKRTKKKEKNKKNKNKSRKEE 53
+N++E++ + KEK N EE+ + KK KNKK + KS E
Sbjct: 1523 RNQEEKEPAGQGELESDKEKKGNLESVLSNQEKNIEEDYAESDIKKRKNKK-QYKSNTEA 1581
Query: 54 E 54
E
Sbjct: 1582 E 1582
Score = 30.8 bits (70), Expect = 1.8
Identities = 18/41 (43%), Positives = 24/41 (58%)
Query: 141 EKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKA 181
K+ + EE+ KKKKKK+KKK + K EEK + E A
Sbjct: 730 GKDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKARIEIA 770
Score = 28.9 bits (65), Expect = 6.6
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 115 KNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEE 154
+N + K+ E K ++ E+K K+ KKKEK K + K EE+
Sbjct: 726 RNWNGKDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKA 765
Score = 28.9 bits (65), Expect = 6.6
Identities = 15/48 (31%), Positives = 25/48 (52%)
Query: 34 KRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRR 81
KK +N K+ K + + KK+K K K ++EE K+++K R
Sbjct: 719 GLMKKIFRNWNGKDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKAR 766
>gnl|CDD|219563 pfam07767, Nop53, Nop53 (60S ribosomal biogenesis). This nucleolar
family of proteins are involved in 60S ribosomal
biogenesis. They are specifically involved in the
processing beyond the 27S stage of 25S rRNA maturation.
This family contains sequences that bear similarity to
the glioma tumour suppressor candidate region gene 2
protein (p60). This protein has been found to interact
with herpes simplex type 1 regulatory proteins.
Length = 387
Score = 45.9 bits (109), Expect = 3e-05
Identities = 33/148 (22%), Positives = 73/148 (49%), Gaps = 1/148 (0%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKK 61
++ EK+ K +++ ++ E+ + K ++ E + + EE+
Sbjct: 199 LQEEYEKEVKAEKKRQELERVEEKKLEKMAPEASRLDEMSEGLLEESDDDGEEESDDESA 258
Query: 62 KEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKE 121
E +++ K + KR+TK + +NK K RKE +++ EE++ K K + + K +
Sbjct: 259 WEGFESEYEPINKPVRPKRKTKAQ-RNKEKRRKELEREAKEEKQLKKKLAQLARLKEIAK 317
Query: 122 EEEKKKEAEEKKKKRTKKKEKNKNKSRK 149
E +K++A +KK++ K++ + K R+
Sbjct: 318 EVAQKEKARARKKEQRKERGEKKKLKRR 345
Score = 41.2 bits (97), Expect = 6e-04
Identities = 36/158 (22%), Positives = 85/158 (53%), Gaps = 4/158 (2%)
Query: 24 NKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTK 83
N S ++ +E + + +++ K K + E ++K+ +K ++ + + ++
Sbjct: 189 NPSFEDHQELLQEEYEKEVKAEKKRQELERVEEKKLEKMAPEASRLDEMSEGLLEESDDD 248
Query: 84 KKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKN 143
+E++ ++S E + E E K + K K K + KE+ K+ E E K++K+ KKK
Sbjct: 249 GEEESDDESAWEGFESEYEPINKPVRPKRKTKAQRNKEKRRKELEREAKEEKQLKKKLAQ 308
Query: 144 KNK----SRKEEEEEEKKKKKKKKKKKRTKKKEEEKRK 177
+ +++ ++E+ + +KK+++K+R +KK+ ++RK
Sbjct: 309 LARLKEIAKEVAQKEKARARKKEQRKERGEKKKLKRRK 346
Score = 31.6 bits (72), Expect = 0.82
Identities = 34/164 (20%), Positives = 76/164 (46%), Gaps = 9/164 (5%)
Query: 31 EEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKN 90
E+ + ++E K+ K + +++E ++ KK EK + + ++ + + +
Sbjct: 193 EDHQELLQEEYEKEVKAEKKRQELERVEEKKLEKMAPEASRLDEMSEGLLEESDDDG-EE 251
Query: 91 KSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKK-----KKRTKKKEKNKN 145
+S E + E E + + K RK + ++ KE K+ K+ + K+K
Sbjct: 252 ESDDESAWEGFESEYEPINKPVRPK---RKTKAQRNKEKRRKELEREAKEEKQLKKKLAQ 308
Query: 146 KSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKAVRLTKLSA 189
+R +E +E +K+K + +K+ ++KE ++K K +L K
Sbjct: 309 LARLKEIAKEVAQKEKARARKKEQRKERGEKKKLKRRKLGKHKY 352
Score = 30.8 bits (70), Expect = 1.2
Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKK 61
NK K+K K + + KEK + + +E +EEK+ KKK + KE +K++ +
Sbjct: 269 INKPVRPKRKTKAQ-RNKEKRRKELEREAKEEKQLKKKLAQLARLKEIAKEVAQKEKARA 327
Query: 62 KEKNKNKNRKEEKKKKKKRRTKKKEKNKN 90
++K + K R E+KK K+++ K K
Sbjct: 328 RKKEQRKERGEKKKLKRRKLGKHKYPEPP 356
Score = 28.1 bits (63), Expect = 9.4
Identities = 33/178 (18%), Positives = 65/178 (36%), Gaps = 10/178 (5%)
Query: 10 KKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKN 69
+ KK K + EE+ + KK+ + E+ KK K + N
Sbjct: 113 RGKKGGKAKLLNASKDNYDLWGEEEPPDTPKWPKKDLAEHTLEQVAKKTVKTAPISLAAN 172
Query: 70 RKEEKKKKKKRRTKK-------KEKNKNKSRKEEKKKE---AEEEKKKTKNKEKNKNKSR 119
K + ++ + ++E K E E E+ + K EK ++
Sbjct: 173 GKPVPAVEVPHAGASYNPSFEDHQELLQEEYEKEVKAEKKRQELERVEEKKLEKMAPEAS 232
Query: 120 KEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRK 177
+ +E + EE ++ + E E E K + K+K + ++ +E++RK
Sbjct: 233 RLDEMSEGLLEESDDDGEEESDDESAWEGFESEYEPINKPVRPKRKTKAQRNKEKRRK 290
>gnl|CDD|217884 pfam04086, SRP-alpha_N, Signal recognition particle, alpha subunit,
N-terminal. SRP is a complex of six distinct
polypeptides and a 7S RNA that is essential for
transferring nascent polypeptide chains that are
destined for export from the cell to the translocation
apparatus of the endoplasmic reticulum (ER) membrane.
SRP binds hydrophobic signal sequences as they emerge
from the ribosome, and arrests translation.
Length = 272
Score = 45.1 bits (107), Expect = 3e-05
Identities = 31/132 (23%), Positives = 62/132 (46%)
Query: 51 KEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKN 110
+E EK+ + + K + +E KK KK + + K K K +++K+A+E ++
Sbjct: 95 RELEKESKKQAKSPKAMRTFEESKKSKKTVDSMIERKPKEPGLKRKQRKKAQESATSPES 154
Query: 111 KEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKK 170
+ S + +A+E +R KK K + + +E+ K K KK K+ +K
Sbjct: 155 SPSSTPNSSRPSTPHLLKAKEGPSRRAKKAAKLSSTASSGDEKSPKSKAAPKKAGKKMRK 214
Query: 171 KEEEKRKNEKAV 182
+ + +++ AV
Sbjct: 215 WDLDGDEDDDAV 226
Score = 30.9 bits (70), Expect = 1.1
Identities = 31/165 (18%), Positives = 64/165 (38%), Gaps = 9/165 (5%)
Query: 4 KKEEKKKKKKRRTKKKEKNK--NKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKK 61
KK+ K K R ++ +K+K S E + ++ K+++ KK + + E T
Sbjct: 102 KKQAKSPKAMRTFEESKKSKKTVDSMIERKPKEPGLKRKQRKKAQESATSPESSPSSTPN 161
Query: 62 KEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKE 121
+ + + K+ +R K + + S +EK K +K K RK
Sbjct: 162 SSRPSTPHLLKAKEGPSRRAKKAAKLSSTASSGDEKS------PKSKAAPKKAGKKMRKW 215
Query: 122 EEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKK 166
+ + E ++ + ++N E+ EE ++ + K
Sbjct: 216 DLD-GDEDDDAVLDYSAPDANDENADAPEDVEEVDQESWGRGTMK 259
Score = 28.9 bits (65), Expect = 4.3
Identities = 22/123 (17%), Positives = 42/123 (34%), Gaps = 22/123 (17%)
Query: 80 RRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEE-----EEKKKEAEEKK- 133
++ ++ EK K K K EE KK+K + + + +E +++KK E
Sbjct: 92 QQLRELEKESKKQAKSPKAMRTFEESKKSKKTVDSMIERKPKEPGLKRKQRKKAQESATS 151
Query: 134 ----------------KKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRK 177
K KE +++K + +K K ++ +K
Sbjct: 152 PESSPSSTPNSSRPSTPHLLKAKEGPSRRAKKAAKLSSTASSGDEKSPKSKAAPKKAGKK 211
Query: 178 NEK 180
K
Sbjct: 212 MRK 214
>gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha
subunit (TFIIF-alpha). Transcription initiation factor
IIF, alpha subunit (TFIIF-alpha) or RNA polymerase
II-associating protein 74 (RAP74) is the large subunit
of transcription factor IIF (TFIIF), which is essential
for accurate initiation and stimulates elongation by RNA
polymerase II.
Length = 528
Score = 45.7 bits (108), Expect = 3e-05
Identities = 36/175 (20%), Positives = 68/175 (38%), Gaps = 15/175 (8%)
Query: 13 KRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSR------------KEEEKKKRTK 60
+ K +E E EK + K+ K K+ E+ ++++K
Sbjct: 183 MKAAKNGPAAFGDEDEETEGEKGGGGRGKDLKIKDLEGDDEDDGDESDKGGEDGDEEKSK 242
Query: 61 KKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRK 120
KK+K KN+K+ KK +R + ++ S + + E+ + + N +
Sbjct: 243 KKKKKLAKNKKKLDDDKKGKRGGDDDADEYDS---DDGDDEGREEDYISDSSASGNDPEE 299
Query: 121 EEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEK 175
E++ E K + + + + + EEE KK KK KK K K ++
Sbjct: 300 REDKLSPEIPAKPEIEQDEDSEESEEEKNEEEGGLSKKGKKLKKLKGKKNGLDKD 354
Score = 41.5 bits (97), Expect = 7e-04
Identities = 31/198 (15%), Positives = 78/198 (39%), Gaps = 16/198 (8%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKK 61
+ ++ K K + + +++ E+ +E+++KKK+K K +++K KR
Sbjct: 207 GGRGKDLKIKDLEGDDEDDGDESDKGGEDGDEEKSKKKKKKLAKNKKKLDDDKKGKRGGD 266
Query: 62 KEKNKNKNRKEEKKKKKKRRTKKKEKNKNK-SRKEEKKKEAEEEKKKTKNKEKNKNKSRK 120
+ ++ + + + +++ + N +E+K K + + E ++ +
Sbjct: 267 DDADEYDSDDGDDEGREEDYISDSSASGNDPEEREDKLSPEIPAKPEIEQDEDSEESEEE 326
Query: 121 EEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEE---------------KKKKKKKKKK 165
+ EE+ +++ KK + K +KN + ++ KK+K+ KK
Sbjct: 327 KNEEEGGLSKKGKKLKKLKGKKNGLDKDDSDSGDDSDDSDIDGEDSVSLVTAKKQKEPKK 386
Query: 166 KRTKKKEEEKRKNEKAVR 183
+ N R
Sbjct: 387 EEPVDSNPSSPGNSGPAR 404
Score = 34.2 bits (78), Expect = 0.11
Identities = 33/185 (17%), Positives = 64/185 (34%), Gaps = 20/185 (10%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRK--------------------EEEEEKRTKKKEK 41
KNKK+ KK +R + ++ S EE E + +
Sbjct: 250 KNKKKLDDDKKGKRGGDDDADEYDSDDGDDEGREEDYISDSSASGNDPEEREDKLSPEIP 309
Query: 42 NKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEA 101
K + EE ++ ++E +K K+ KK K K+ K+ + + ++ +
Sbjct: 310 AKPEIEQDEDSEESEEEKNEEEGGLSKKGKKLKKLKGKKNGLDKDDSDSGDDSDDSDIDG 369
Query: 102 EEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKK 161
E+ K++ + K + + R + K+K K + E +
Sbjct: 370 EDSVSLVTAKKQKEPKKEEPVDSNPSSPGNSGPARPSPESKDKGKRKAANEVSKSPASVP 429
Query: 162 KKKKK 166
KK K
Sbjct: 430 AKKLK 434
Score = 33.4 bits (76), Expect = 0.21
Identities = 33/154 (21%), Positives = 60/154 (38%), Gaps = 23/154 (14%)
Query: 56 KKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNK 115
K K +E + +K K K K+ +E + ++ + ++EK+K
Sbjct: 183 MKAAKNGPAAFGDEDEETEGEKGGGGRGKDLKIKDLEGDDEDDGDESDKGGEDGDEEKSK 242
Query: 116 NKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRK-------------------EEEEEEK 156
K +K + KKK ++KK KR + ++ S + EE E
Sbjct: 243 KKKKKLAKNKKKLDDDKKGKRGGDDDADEYDSDDGDDEGREEDYISDSSASGNDPEERED 302
Query: 157 KKKKKKKKKKRTKK----KEEEKRKNEKAVRLTK 186
K + K ++ +E E+ KNE+ L+K
Sbjct: 303 KLSPEIPAKPEIEQDEDSEESEEEKNEEEGGLSK 336
Score = 31.9 bits (72), Expect = 0.70
Identities = 29/120 (24%), Positives = 48/120 (40%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKK 61
KN++E KK ++ KK + KN K++ + + S +K+K KK
Sbjct: 327 KNEEEGGLSKKGKKLKKLKGKKNGLDKDDSDSGDDSDDSDIDGEDSVSLVTAKKQKEPKK 386
Query: 62 KEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKE 121
+E + + + K+K K K+ E K A KK K + K+ S K
Sbjct: 387 EEPVDSNPSSPGNSGPARPSPESKDKGKRKAANEVSKSPASVPAKKLKTENAPKSSSGKS 446
>gnl|CDD|218737 pfam05764, YL1, YL1 nuclear protein. The proteins in this family
are designated YL1. These proteins have been shown to be
DNA-binding and may be a transcription factor.
Length = 238
Score = 44.7 bits (106), Expect = 3e-05
Identities = 46/156 (29%), Positives = 76/156 (48%), Gaps = 12/156 (7%)
Query: 29 EEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKN 88
E+E +R ++ +K K+ K K+ KE KKK+ K K+ + KKK R
Sbjct: 74 GEKELQREERLKKKKRVKTKAYKEPTKKKKKKDPTAAKSPKAAAPRPKKKSERISWAPTL 133
Query: 89 KNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRT----------K 138
+ R++ + + K+ T + K + RK+ + K ++ +EKKK++ K
Sbjct: 134 LDSPRRKSSRSSTVQNKEATHERLKEREIRRKKIQAKARKRKEKKKEKELTQEERLAEAK 193
Query: 139 KKEKNKNKS--RKEEEEEEKKKKKKKKKKKRTKKKE 172
+ E+ KS R EE+EEEKKK K + KKR +
Sbjct: 194 ETERINLKSLERYEEQEEEKKKAKIQALKKRRLYEG 229
Score = 38.1 bits (89), Expect = 0.005
Identities = 23/107 (21%), Positives = 53/107 (49%)
Query: 70 RKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEA 129
++ +++++ K++ + K K + K++KKK+ K + K KS +
Sbjct: 76 KELQREERLKKKKRVKTKAYKEPTKKKKKKDPTAAKSPKAAAPRPKKKSERISWAPTLLD 135
Query: 130 EEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKR 176
++K +NK + + +E E ++KK + K ++ K+K++EK
Sbjct: 136 SPRRKSSRSSTVQNKEATHERLKEREIRRKKIQAKARKRKEKKKEKE 182
>gnl|CDD|226894 COG4499, COG4499, Predicted membrane protein [Function unknown].
Length = 434
Score = 45.6 bits (108), Expect = 3e-05
Identities = 24/90 (26%), Positives = 46/90 (51%), Gaps = 6/90 (6%)
Query: 77 KKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKR 136
K K R+E K+ ++ + TK + K+++ EE + K EEK K+
Sbjct: 351 KLYEEVKSNTDLSGDKRQELLKEYNKKLQDYTKKLGEVKDETDASEEAEAKAKEEKLKQE 410
Query: 137 TKKKEKNKNKSRKEEEEEEKKKKKKKKKKK 166
+K++ KE+ +E+K+K++K ++KK
Sbjct: 411 ENEKKQ------KEQADEDKEKRQKDERKK 434
Score = 41.3 bits (97), Expect = 7e-04
Identities = 19/82 (23%), Positives = 46/82 (56%)
Query: 99 KEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKK 158
K EE K T + + KE +K ++ +K + + + ++ K +EE+ K++
Sbjct: 351 KLYEEVKSNTDLSGDKRQELLKEYNKKLQDYTKKLGEVKDETDASEEAEAKAKEEKLKQE 410
Query: 159 KKKKKKKKRTKKKEEEKRKNEK 180
+ +KK+K++ + +E+++K+E+
Sbjct: 411 ENEKKQKEQADEDKEKRQKDER 432
Score = 38.6 bits (90), Expect = 0.004
Identities = 24/98 (24%), Positives = 47/98 (47%), Gaps = 13/98 (13%)
Query: 36 TKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKE 95
TK E+ K N + S +++++ K+ K K+ + K + ++ + K
Sbjct: 350 TKLYEEVKSNTDLS--GDKRQELLKEYNKKLQDYTKKLGEVKDETDASEEAEAK------ 401
Query: 96 EKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKK 133
A+EEK K + EK + + E++EK+++ E KK
Sbjct: 402 -----AKEEKLKQEENEKKQKEQADEDKEKRQKDERKK 434
Score = 38.2 bits (89), Expect = 0.006
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query: 10 KKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRK---EEEKKKRTKKKEKNK 66
K++ K+ K K+ E K + + K K K EE +KK+ ++ +++K
Sbjct: 365 DKRQELLKEYNKKLQDYTKKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDK 424
Query: 67 NKNRKEEKKK 76
K +K+E+KK
Sbjct: 425 EKRQKDERKK 434
Score = 34.8 bits (80), Expect = 0.079
Identities = 18/83 (21%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 55 KKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEK-KKTKNKEK 113
K K + + ++++E K+ ++ + K + + E E E K K+ K K++
Sbjct: 351 KLYEEVKSNTDLSGDKRQELLKEYNKKLQDYTKKLGEVKDETDASEEAEAKAKEEKLKQE 410
Query: 114 NKNKSRKEEEEKKKEAEEKKKKR 136
K +KE+ ++ KE +K +++
Sbjct: 411 ENEKKQKEQADEDKEKRQKDERK 433
Score = 34.4 bits (79), Expect = 0.11
Identities = 24/86 (27%), Positives = 52/86 (60%), Gaps = 3/86 (3%)
Query: 16 TKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKK 75
TK E+ K+ + ++++ KE NKK ++ ++K E K T E+ + K ++E+ K
Sbjct: 350 TKLYEEVKSNT-DLSGDKRQELLKEYNKKLQDYTKKLGEVKDETDASEEAEAKAKEEKLK 408
Query: 76 --KKKKRRTKKKEKNKNKSRKEEKKK 99
+ +K++ ++ +++K K +K+E+KK
Sbjct: 409 QEENEKKQKEQADEDKEKRQKDERKK 434
Score = 31.7 bits (72), Expect = 0.66
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 114 NKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEE 173
N + S + +E KE +K + TKK + K EE E K K++K K++ +KK++
Sbjct: 359 NTDLSGDKRQELLKEYNKKLQDYTKKLGEVK-DETDASEEAEAKAKEEKLKQEENEKKQK 417
Query: 174 EKRKNEKAVR 183
E+ +K R
Sbjct: 418 EQADEDKEKR 427
Score = 29.4 bits (66), Expect = 4.1
Identities = 14/60 (23%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 5 KEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEK 64
K+ + KK K E + ++ + + +E++ K++E KK K ++ +++EK+ + +++K
Sbjct: 376 KKLQDYTKKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDKEKR-QKDERKK 434
Score = 28.6 bits (64), Expect = 6.2
Identities = 12/47 (25%), Positives = 27/47 (57%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNK 48
+ K E ++ K+EK K + +++++E+ + KEK +K++ K
Sbjct: 387 EVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDKEKRQKDERK 433
>gnl|CDD|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742).
This is a family of fungal proteins of unknown function.
Length = 182
Score = 43.9 bits (104), Expect = 3e-05
Identities = 30/113 (26%), Positives = 65/113 (57%), Gaps = 1/113 (0%)
Query: 51 KEEEKKKRTKKKEKNK-NKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTK 109
E +KKK+ +E K K +E++K K K++ KK+K+K+K +K++KK + E+K + +
Sbjct: 58 TEAKKKKKELAEEIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKE 117
Query: 110 NKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKK 162
++K ++ ++ E +E K +K K+ +++ ++ E KK+ ++
Sbjct: 118 AEDKLEDLTKSYSETLSTLSELKPRKYALHKDIYQSRLDRKRRAEVAKKEAEE 170
Score = 43.1 bits (102), Expect = 5e-05
Identities = 23/83 (27%), Positives = 47/83 (56%)
Query: 84 KKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKN 143
KK+K + E+ KKE EE++K K+K+K K K++++K + ++K +K+ +K+ ++
Sbjct: 61 KKKKKELAEEIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAED 120
Query: 144 KNKSRKEEEEEEKKKKKKKKKKK 166
K + + E + K +K
Sbjct: 121 KLEDLTKSYSETLSTLSELKPRK 143
Score = 43.1 bits (102), Expect = 6e-05
Identities = 26/76 (34%), Positives = 40/76 (52%)
Query: 100 EAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKK 159
E E KKK K + K +KE EEK+K +KKK + KK + K K++++ EKK +
Sbjct: 56 EYTEAKKKKKELAEEIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDE 115
Query: 160 KKKKKKKRTKKKEEEK 175
K+ + K K +
Sbjct: 116 KEAEDKLEDLTKSYSE 131
Score = 40.1 bits (94), Expect = 6e-04
Identities = 31/117 (26%), Positives = 54/117 (46%), Gaps = 5/117 (4%)
Query: 6 EEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKN 65
E KKKKK ++ EK +KE EE+++ K K+K K K K+++ K+ K EK
Sbjct: 58 TEAKKKKKELAEEIEK----VKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKK 113
Query: 66 KNKNRKEEKKKKKKRRTKKKEKNKN-KSRKEEKKKEAEEEKKKTKNKEKNKNKSRKE 121
K +++ + K ++ K RK K+ + + K + + K +E
Sbjct: 114 DEKEAEDKLEDLTKSYSETLSTLSELKPRKYALHKDIYQSRLDRKRRAEVAKKEAEE 170
Score = 35.1 bits (81), Expect = 0.036
Identities = 26/112 (23%), Positives = 57/112 (50%), Gaps = 4/112 (3%)
Query: 3 NKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKK 62
++ EK KK+ +K + K KS+K+++++ K +K+ K +KS K++EK+ K +
Sbjct: 68 AEEIEKVKKEYEEKQKWKWKKKKSKKKKDKD----KDKKDDKKDDKSEKKDEKEAEDKLE 123
Query: 63 EKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKN 114
+ K+ + + K R K+ +SR + K++ +K+ + +
Sbjct: 124 DLTKSYSETLSTLSELKPRKYALHKDIYQSRLDRKRRAEVAKKEAEELQNPG 175
Score = 32.4 bits (74), Expect = 0.28
Identities = 22/54 (40%), Positives = 34/54 (62%)
Query: 127 KEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEK 180
+ E KKKK+ +E K K EE+++ K KKKK KKKK K +++ +K++K
Sbjct: 56 EYTEAKKKKKELAEEIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDK 109
>gnl|CDD|234767 PRK00448, polC, DNA polymerase III PolC; Validated.
Length = 1437
Score = 45.6 bits (109), Expect = 4e-05
Identities = 38/174 (21%), Positives = 69/174 (39%), Gaps = 1/174 (0%)
Query: 5 KEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKK-KEKNKKNKNKSRKEEEKKKRTKKKE 63
K+ + + +N + EE + EK KKN + +K+K +
Sbjct: 65 KQSFSHIADIKVTFSIEVENITFTEELLLDYWNEIIEKAKKNSPLFKSLLKKQKVEVEGN 124
Query: 64 KNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEE 123
K K E ++ K++ K + + K E + EK + + +E+E
Sbjct: 125 KLIIKVNNEIERDHLKKKHLPKLIKQYEKFGFGILKIDFEIDDSKEELEKFEAQKEEEDE 184
Query: 124 EKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRK 177
+ KEA E KK +K+K +E + KK K++ K+ EE+R+
Sbjct: 185 KLAKEALEAMKKLEAEKKKQSKNFDPKEGPVQIGKKIDKEEITPMKEINEEERR 238
Score = 32.9 bits (76), Expect = 0.33
Identities = 26/116 (22%), Positives = 50/116 (43%), Gaps = 8/116 (6%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKK 61
K K+ +K K + KEE E+ +K+E+++K ++ + +K + KK
Sbjct: 143 HLPKLIKQYEKFGFGILKIDFEIDDSKEELEKFEAQKEEEDEKLAKEALEAMKKLEAEKK 202
Query: 62 KEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEE------EKKKTKNK 111
K+ ++ + KK K+E K EE+++ E E K+ K+
Sbjct: 203 KQSKNFDPKEGPVQIGKK--IDKEEITPMKEINEEERRVVVEGYVFKVEIKELKSG 256
Score = 32.5 bits (75), Expect = 0.47
Identities = 30/129 (23%), Positives = 50/129 (38%), Gaps = 10/129 (7%)
Query: 52 EEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNK 111
E+ KK K K + + E K + + E++ K + K + E+ K
Sbjct: 101 EKAKKNSPLFKSLLKKQKVEVEGNKLIIKVNNEIERDHLKKKHLPKLIKQYEKFGFGILK 160
Query: 112 EKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKK 171
+ KEE EK + +KE+ K KE E KK + +KKK+ +
Sbjct: 161 IDFEIDDSKEELEKFEA----------QKEEEDEKLAKEALEAMKKLEAEKKKQSKNFDP 210
Query: 172 EEEKRKNEK 180
+E + K
Sbjct: 211 KEGPVQIGK 219
>gnl|CDD|191187 pfam05087, Rota_VP2, Rotavirus VP2 protein. Rotavirus particles
consist of three concentric proteinaceous capsid layers.
The innermost capsid (core) is made of VP2. The genomic
RNA and the two minor proteins VP1 and VP3 are
encapsidated within this layer. The N-terminus of
rotavirus VP2 is necessary for the encapsidation of VP1
and VP3.
Length = 887
Score = 45.7 bits (108), Expect = 4e-05
Identities = 32/125 (25%), Positives = 63/125 (50%), Gaps = 4/125 (3%)
Query: 14 RRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEE--EKKKRTKKKEKNKNKNRK 71
R ++ N N +E+++EK+ +K K K +KEE + KE++ +N K
Sbjct: 4 RNRREANINNNDRMQEKDDEKQDQKNRMELKEKVLDKKEEVVTDNVDSPVKEQSSQENLK 63
Query: 72 EEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEE--KKKTKNKEKNKNKSRKEEEEKKKEA 129
+ KK + + K+ + KEE +KE + E +K + E ++ +K E+ K ++A
Sbjct: 64 IADEVKKSTKEESKQLLEVLKTKEEHQKEIQYEILQKTIPSFEPKESILKKLEDIKPEQA 123
Query: 130 EEKKK 134
+++ K
Sbjct: 124 KKQTK 128
Score = 44.5 bits (105), Expect = 9e-05
Identities = 31/125 (24%), Positives = 63/125 (50%), Gaps = 2/125 (1%)
Query: 41 KNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEE-KKKKKKRRTKKKEKNKNKSRKEEKKK 99
+N++ N + + ++K +K+++ KE+ KK++ T + + +E K
Sbjct: 4 RNRREANINNNDRMQEKDDEKQDQKNRMELKEKVLDKKEEVVTDNVDSPVKEQSSQENLK 63
Query: 100 EAEEEKKKTKNKEKNKNKSRKEEEEKKKEAE-EKKKKRTKKKEKNKNKSRKEEEEEEKKK 158
A+E KK TK + K + K +EE +KE + E +K E ++ +K E+ + ++
Sbjct: 64 IADEVKKSTKEESKQLLEVLKTKEEHQKEIQYEILQKTIPSFEPKESILKKLEDIKPEQA 123
Query: 159 KKKKK 163
KK+ K
Sbjct: 124 KKQTK 128
Score = 40.7 bits (95), Expect = 0.001
Identities = 19/114 (16%), Positives = 54/114 (47%)
Query: 89 KNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSR 148
+N+ + +EK K +KN+ + +++ +KK+E K++ ++ +
Sbjct: 4 RNRREANINNNDRMQEKDDEKQDQKNRMELKEKVLDKKEEVVTDNVDSPVKEQSSQENLK 63
Query: 149 KEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKAVRLTKLSAFGISGYLLQWIRN 202
+E ++ K++ K+ + K KEE +++ + + + +F +L+ + +
Sbjct: 64 IADEVKKSTKEESKQLLEVLKTKEEHQKEIQYEILQKTIPSFEPKESILKKLED 117
Score = 38.8 bits (90), Expect = 0.006
Identities = 31/128 (24%), Positives = 61/128 (47%), Gaps = 3/128 (2%)
Query: 61 KKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEK-NKNKSR 119
+ + N N + ++K + +K + + K + +KK+E + + KE+ ++ +
Sbjct: 4 RNRREANINNNDRMQEKDDEKQDQKNRMELKEKVLDKKEEVVTDNVDSPVKEQSSQENLK 63
Query: 120 KEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNE 179
+E KK EE K+ K K +++ KE + E +K + K + K+ E K E
Sbjct: 64 IADEVKKSTKEESKQLLEVLKTKEEHQ--KEIQYEILQKTIPSFEPKESILKKLEDIKPE 121
Query: 180 KAVRLTKL 187
+A + TKL
Sbjct: 122 QAKKQTKL 129
>gnl|CDD|177089 CHL00189, infB, translation initiation factor 2; Provisional.
Length = 742
Score = 44.8 bits (106), Expect = 7e-05
Identities = 31/127 (24%), Positives = 52/127 (40%)
Query: 37 KKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEE 96
K + ++ + + KK K +KNK N+ ++ K KK + K+K+K K K ++
Sbjct: 32 KIRLESDIKDSLLNLDINKKLHEKLDKKNKKFNKTDDLKDSKKTKLKQKKKIKKKLHIDD 91
Query: 97 KKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEK 156
+ K +K S + + K E +KK K K K K ++E K
Sbjct: 92 DYDNFFDSKNNSKQFAGPLAISLMRKPKPKTEKLKKKITVNKSTNKKKKKVLSSKDELIK 151
Query: 157 KKKKKKK 163
K K
Sbjct: 152 YDNNKPK 158
Score = 44.4 bits (105), Expect = 8e-05
Identities = 37/156 (23%), Positives = 61/156 (39%), Gaps = 10/156 (6%)
Query: 32 EEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNK 91
E + E KN + K K + ++ K+ KK K +KNK
Sbjct: 4 ENNISISSENTIDLKNPLFIKNLKHSSYKIRLESDIKDSLLNLDINKKLHEKLDKKNKKF 63
Query: 92 SRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKK------KEKNKN 145
++ ++ K + +K K K K+K K K +++ + K+ K K
Sbjct: 64 NKTDDLK---DSKKTKLKQKKKIKKKLHIDDDYDNFFDSKNNSKQFAGPLAISLMRKPKP 120
Query: 146 KSRKEEEEE-EKKKKKKKKKKKRTKKKEEEKRKNEK 180
K+ K +++ K KKKKK + K E K N K
Sbjct: 121 KTEKLKKKITVNKSTNKKKKKVLSSKDELIKYDNNK 156
Score = 41.7 bits (98), Expect = 6e-04
Identities = 28/113 (24%), Positives = 47/113 (41%), Gaps = 1/113 (0%)
Query: 7 EKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNK 66
+ KK + KK K NK+ ++ +K K++K K K + + +K K
Sbjct: 47 DINKKLHEKLDKKNKKFNKTDDLKDSKKTKLKQKKKIKKKLHIDDDYDNFFDSKNNSKQF 106
Query: 67 NKNRKEEKKKKKKRRTKK-KEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKS 118
+K K +T+K K+K +KKK+ K + + NK KS
Sbjct: 107 AGPLAISLMRKPKPKTEKLKKKITVNKSTNKKKKKVLSSKDELIKYDNNKPKS 159
Score = 41.0 bits (96), Expect = 0.001
Identities = 29/126 (23%), Positives = 52/126 (41%), Gaps = 5/126 (3%)
Query: 9 KKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKK---RTKKKEKN 65
K + + + K+ + +K +K +K K NK+ ++ KK + KKK K
Sbjct: 26 LKHSSYKIRLESDIKDSLLNLDINKKLHEKLDKKNKKFNKTDDLKDSKKTKLKQKKKIKK 85
Query: 66 K-NKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEE 124
K + + + K +K+ S + K + E+ KKK K+ NK +K+
Sbjct: 86 KLHIDDDYDNFFDSKNNSKQFAGPLAISLMRKPKPKTEKLKKKITVN-KSTNKKKKKVLS 144
Query: 125 KKKEAE 130
K E
Sbjct: 145 SKDELI 150
Score = 38.3 bits (89), Expect = 0.007
Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 2/88 (2%)
Query: 3 NKKEEKKKKKKRRTK--KKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTK 60
+KK + K+KKK + K + N + ++ + K K + E+ KKK T
Sbjct: 72 SKKTKLKQKKKIKKKLHIDDDYDNFFDSKNNSKQFAGPLAISLMRKPKPKTEKLKKKITV 131
Query: 61 KKEKNKNKNRKEEKKKKKKRRTKKKEKN 88
K NK K + K + + K K+
Sbjct: 132 NKSTNKKKKKVLSSKDELIKYDNNKPKS 159
Score = 29.8 bits (67), Expect = 3.5
Identities = 16/89 (17%), Positives = 33/89 (37%), Gaps = 1/89 (1%)
Query: 105 KKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKK 164
K + K + ++ + + +K K K+ NK K+ ++ + K+KKK KK
Sbjct: 26 LKHSSYKIRLESDIKDSLLNLDINKKLHEKLDKKNKKFNKTDDLKDSKKTKLKQKKKIKK 85
Query: 165 KKRTKKKEEE-KRKNEKAVRLTKLSAFGI 192
K + + + A +
Sbjct: 86 KLHIDDDYDNFFDSKNNSKQFAGPLAISL 114
>gnl|CDD|236081 PRK07735, PRK07735, NADH dehydrogenase subunit C; Validated.
Length = 430
Score = 43.8 bits (103), Expect = 1e-04
Identities = 48/183 (26%), Positives = 78/183 (42%), Gaps = 4/183 (2%)
Query: 3 NKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKN---KNKSRKEEEKKKRT 59
K E KK+ R K+E K K E + +++ + K+ KN EE K+R
Sbjct: 4 EKDLEDLKKEAARRAKEEARKRLVAKHGAEISKLEEENREKEKALPKNDDMTIEEAKRRA 63
Query: 60 KKKEKNKNKNRKEEKKKKKKRRT-KKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKS 118
K K ++K++ + T ++K K K K+ K K A K+K + E+ +
Sbjct: 64 AAAAKAKAAALAKQKREGTEEVTEEEKAKAKAKAAAAAKAKAAALAKQKREGTEEVTEEE 123
Query: 119 RKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKN 178
+ + K A + K K+++ + EEEEE K+K K K K K K
Sbjct: 124 KAAAKAKAAAAAKAKAAALAKQKREGTEEVTEEEEETDKEKAKAKAAAAAKAKAAALAKQ 183
Query: 179 EKA 181
+ A
Sbjct: 184 KAA 186
Score = 41.9 bits (98), Expect = 5e-04
Identities = 45/178 (25%), Positives = 73/178 (41%), Gaps = 13/178 (7%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKE-------EE 54
K+ E K +++ R K+K KN EE ++R K K +K EE
Sbjct: 29 KHGAEISKLEEENREKEKALPKNDDMTIEEAKRRAAAAAKAKAAALAKQKREGTEEVTEE 88
Query: 55 KKKRTKKKEKNKNKNRKEEKKKKKKR-----RTKKKEKNKNKSRKEEKKKEAEEEKKKTK 109
+K + K K K + K+K+ ++K K K+ K K A K+K +
Sbjct: 89 EKAKAKAKAAAAAKAKAAALAKQKREGTEEVTEEEKAAAKAKAAAAAKAKAAALAKQKRE 148
Query: 110 NKEKNKNKSRKEEEEK-KKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKK 166
E+ + + ++EK K +A K + K K E EE +++K K K K
Sbjct: 149 GTEEVTEEEEETDKEKAKAKAAAAAKAKAAALAKQKAAEAGEGTEEVTEEEKAKAKAK 206
Score = 39.2 bits (91), Expect = 0.003
Identities = 44/186 (23%), Positives = 77/186 (41%), Gaps = 11/186 (5%)
Query: 5 KEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEK 64
K + K K K K K ++E EE ++K K + K + +K+E
Sbjct: 90 KAKAKAKAAAAAKAKAAALAKQKREGTEEVTEEEKAAAKAKAAAAAKAKAAALAKQKREG 149
Query: 65 NKNKNRKEEKKKKKKRRTKKKE--KNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEE 122
+ +EE+ K+K + K K K + ++K EA E ++ +EK K K++
Sbjct: 150 TEEVTEEEEETDKEKAKAKAAAAAKAKAAALAKQKAAEAGEGTEEVTEEEKAKAKAKAAA 209
Query: 123 EEKKKEAEEKKKKRTK---------KKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEE 173
K K A K+K ++ K K ++ + + K K + KK + K+E
Sbjct: 210 AAKAKAAALAKQKASQGNGDSGDEDAKAKAIAAAKAKAAAAARAKTKGAEGKKEEEPKQE 269
Query: 174 EKRKNE 179
E N+
Sbjct: 270 EPSVNQ 275
Score = 33.8 bits (77), Expect = 0.18
Identities = 35/147 (23%), Positives = 57/147 (38%), Gaps = 2/147 (1%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKK 61
K K K+K + + +EEEE + K K K K+K +
Sbjct: 129 AKAAAAAKAKAAALAKQKREGTEEVTEEEEETDKEKAKAKAAAAAKAKAAALAKQKAAEA 188
Query: 62 KEKNKNKNRKEEKKKKKKRRTKKKEKNK--NKSRKEEKKKEAEEEKKKTKNKEKNKNKSR 119
E + +E+ K K K K K K + + ++ +E K K K K+
Sbjct: 189 GEGTEEVTEEEKAKAKAKAAAAAKAKAAALAKQKASQGNGDSGDEDAKAKAIAAAKAKAA 248
Query: 120 KEEEEKKKEAEEKKKKRTKKKEKNKNK 146
K K AE KK++ K++E + N+
Sbjct: 249 AAARAKTKGAEGKKEEEPKQEEPSVNQ 275
Score = 32.3 bits (73), Expect = 0.43
Identities = 36/186 (19%), Positives = 64/186 (34%), Gaps = 7/186 (3%)
Query: 8 KKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKN 67
+K++ ++EK K K++ + + K K+ + EEEK K
Sbjct: 77 QKREGTEEVTEEEKAKAKAKAAAAAKAKAAALAKQKREGTEEVTEEEKAAAKAKAAAAAK 136
Query: 68 KNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSR-------K 120
K+K++ + E+ + +++ K K A K K K K
Sbjct: 137 AKAAALAKQKREGTEEVTEEEEETDKEKAKAKAAAAAKAKAAALAKQKAAEAGEGTEEVT 196
Query: 121 EEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEK 180
EEE+ K +A+ + K K K+ + + + K K K R K
Sbjct: 197 EEEKAKAKAKAAAAAKAKAAALAKQKASQGNGDSGDEDAKAKAIAAAKAKAAAAARAKTK 256
Query: 181 AVRLTK 186
K
Sbjct: 257 GAEGKK 262
>gnl|CDD|221641 pfam12569, NARP1, NMDA receptor-regulated protein 1. This domain
family is found in eukaryotes, and is approximately 40
amino acids in length. The family is found in
association with pfam07719, pfam00515. There is a single
completely conserved residue L that may be functionally
important. NARP1 is the mammalian homologue of a yeast
N-terminal acetyltransferase that regulates entry into
the G(0) phase of the cell cycle.
Length = 516
Score = 43.4 bits (103), Expect = 2e-04
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Query: 88 NKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKS 147
+ E +++E E ++K + K RK E++ +KE EK KKK + K
Sbjct: 388 HDKPLLAEGEEEEGENGNLSPAERKKLRKKQRKAEKKAEKEEAEKAAA--KKKAEAAAKK 445
Query: 148 RKEEEEEEKKK 158
K + E KK
Sbjct: 446 AKGPDGETKKV 456
Score = 41.8 bits (99), Expect = 4e-04
Identities = 15/70 (21%), Positives = 35/70 (50%)
Query: 84 KKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKN 143
K + + + E + E+KK + K++ K ++EE +K A++K + KK +
Sbjct: 390 KPLLAEGEEEEGENGNLSPAERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGP 449
Query: 144 KNKSRKEEEE 153
+++K + +
Sbjct: 450 DGETKKVDPD 459
Score = 41.1 bits (97), Expect = 8e-04
Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Query: 104 EKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKK 163
+ + +E+ E+KK +K++K KK EK + + +++ E KK K
Sbjct: 390 KPLLAEGEEEEGENGNLSPAERKK-LRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKG 448
Query: 164 KKKRTKKKEEE 174
TKK + +
Sbjct: 449 PDGETKKVDPD 459
Score = 40.7 bits (96), Expect = 0.001
Identities = 17/67 (25%), Positives = 31/67 (46%)
Query: 37 KKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEE 96
+ + ++ +N + E+KK KK+ K + K KEE +K ++ + K K E
Sbjct: 393 LAEGEEEEGENGNLSPAERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGE 452
Query: 97 KKKEAEE 103
KK +
Sbjct: 453 TKKVDPD 459
Score = 39.1 bits (92), Expect = 0.004
Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 11/72 (15%)
Query: 59 TKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKK---KTKNKEKNK 115
+ E+ + +N ++KK R K RK EKK E EE +K K K + K
Sbjct: 393 LAEGEEEEGENGNLSPAERKKLR--------KKQRKAEKKAEKEEAEKAAAKKKAEAAAK 444
Query: 116 NKSRKEEEEKKK 127
+ E KK
Sbjct: 445 KAKGPDGETKKV 456
Score = 38.0 bits (89), Expect = 0.009
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 129 AEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRK 177
E+KK R KK+ K + K+ KEE E+ KKK + K+ K + E +K
Sbjct: 408 PAERKKLR-KKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGETKK 455
Score = 36.8 bits (86), Expect = 0.020
Identities = 16/63 (25%), Positives = 28/63 (44%)
Query: 17 KKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKK 76
+ + + +R K ++K +K + K+ KEE +K KKK + K K +
Sbjct: 393 LAEGEEEEGENGNLSPAERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGE 452
Query: 77 KKK 79
KK
Sbjct: 453 TKK 455
Score = 35.7 bits (83), Expect = 0.047
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 137 TKKKEKNKNKSRKEEEEEEKK-KKKKKKKKKRTKKKEEEKRKNEKAVRLTKLSAFGISG 194
+ E+ + ++ E KK +KK++K +K+ +K+E EK +K A G G
Sbjct: 393 LAEGEEEEGENGNLSPAERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPDG 451
Score = 35.3 bits (82), Expect = 0.050
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 7/56 (12%)
Query: 3 NKKEEKK-KKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKK 57
+ E KK +KK+R+ +KK + KEE E+ KKK + K K E KK
Sbjct: 407 SPAERKKLRKKQRKAEKKAE------KEEAEKAAAKKKAEAAAKKAKGPDGETKKV 456
Score = 32.2 bits (74), Expect = 0.58
Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 119 RKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKN 178
+ EEE+ + +R K ++K + +K E+EE +K KKK ++ K +
Sbjct: 394 AEGEEEEGENGNLSPAERKKLRKKQRKAEKKAEKEEAEKAA---AKKKAEAAAKKAKGPD 450
Query: 179 EKA 181
+
Sbjct: 451 GET 453
Score = 31.4 bits (72), Expect = 0.82
Identities = 17/56 (30%), Positives = 28/56 (50%)
Query: 126 KKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKA 181
E EE++ + + K RK++ + EKK +K++ +K KKK E K K
Sbjct: 393 LAEGEEEEGENGNLSPAERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKG 448
Score = 29.9 bits (68), Expect = 2.7
Identities = 10/53 (18%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEE 54
+ K +K++K +++ +K+E K ++K +K K +++K +
Sbjct: 411 RKKLRKKQRKAEKKAEKEEA-----EKAAAKKKAEAAAKKAKGPDGETKKVDP 458
>gnl|CDD|236944 PRK11642, PRK11642, exoribonuclease R; Provisional.
Length = 813
Score = 43.6 bits (103), Expect = 2e-04
Identities = 21/85 (24%), Positives = 30/85 (35%)
Query: 4 KKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKE 63
+ K R KK K K + K+ + + K K + KK +K +
Sbjct: 729 RAPRNVGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKAKPKAAKKDARKAK 788
Query: 64 KNKNKNRKEEKKKKKKRRTKKKEKN 88
K K +K K KR KKK
Sbjct: 789 KPSAKTQKIAAATKAKRAAKKKVAE 813
Score = 43.6 bits (103), Expect = 2e-04
Identities = 18/84 (21%), Positives = 33/84 (39%)
Query: 26 SRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKK 85
R K ++K K K K + K+ + + + K+ K K K+ +K
Sbjct: 728 ERAPRNVGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKAKPKAAKKDARKA 787
Query: 86 EKNKNKSRKEEKKKEAEEEKKKTK 109
+K K++K +A+ KK
Sbjct: 788 KKPSAKTQKIAAATKAKRAAKKKV 811
Score = 42.0 bits (99), Expect = 5e-04
Identities = 19/87 (21%), Positives = 39/87 (44%)
Query: 16 TKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKK 75
+++ +N K+ +E+ ++ KK ++ K E +K+ +K+ +K
Sbjct: 727 SERAPRNVGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKAKPKAAKKDARK 786
Query: 76 KKKKRRTKKKEKNKNKSRKEEKKKEAE 102
KK +K K+++ KKK AE
Sbjct: 787 AKKPSAKTQKIAAATKAKRAAKKKVAE 813
Score = 41.7 bits (98), Expect = 7e-04
Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 5/89 (5%)
Query: 54 EKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEK 113
E+ R K + + + KK KRR K+ N +K+A+ + K K
Sbjct: 728 ERAPRNVGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKAKPKAAK-----K 782
Query: 114 NKNKSRKEEEEKKKEAEEKKKKRTKKKEK 142
+ K++K + +K A K KR KK+
Sbjct: 783 DARKAKKPSAKTQKIAAATKAKRAAKKKV 811
Score = 41.3 bits (97), Expect = 9e-04
Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Query: 108 TKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKR 167
++ +N K+ +E+ +K ++ K+R K+ N E++ K K KK ++
Sbjct: 727 SERAPRNVGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKAKPKAAKKDARK 786
Query: 168 TKKKEEEKRK---NEKAVRLTK 186
KK + +K KA R K
Sbjct: 787 AKKPSAKTQKIAAATKAKRAAK 808
Score = 39.7 bits (93), Expect = 0.002
Identities = 18/84 (21%), Positives = 32/84 (38%)
Query: 68 KNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKK 127
R K ++K + K K R+ KK E + K+ ++K+ + KK
Sbjct: 730 APRNVGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKAKPKAAKKDARKAKK 789
Query: 128 EAEEKKKKRTKKKEKNKNKSRKEE 151
+ + +K K K K + E
Sbjct: 790 PSAKTQKIAAATKAKRAAKKKVAE 813
Score = 39.3 bits (92), Expect = 0.003
Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 6/93 (6%)
Query: 82 TKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKE 141
+++ +N K+ +E+ KK + KK K ++ K + + + + E + K K K
Sbjct: 727 SERAPRNVGKTAREKAKK-GDAGKKGGKRRQVGKKVNFEPDSAFRGEKKAKPKAAKKDAR 785
Query: 142 KNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEE 174
K K S K +K K K+ KKK E
Sbjct: 786 KAKKPSAKT-----QKIAAATKAKRAAKKKVAE 813
Score = 36.6 bits (85), Expect = 0.025
Identities = 18/90 (20%), Positives = 35/90 (38%), Gaps = 5/90 (5%)
Query: 76 KKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKK 135
++ R K + K K KK + K N E + +++ + K ++ +K
Sbjct: 728 ERAPRNVGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKAKPKAAKKDARKA 787
Query: 136 RTKKKEKNKNKSRKEEEEEEKKKKKKKKKK 165
+ K K++K + K+ KKK
Sbjct: 788 K-----KPSAKTQKIAAATKAKRAAKKKVA 812
Score = 35.1 bits (81), Expect = 0.072
Identities = 17/67 (25%), Positives = 30/67 (44%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKK 61
K +K K+++ KK + + + E++ K K+ +K K S K ++ TK
Sbjct: 744 KGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKAKPKAAKKDARKAKKPSAKTQKIAAATKA 803
Query: 62 KEKNKNK 68
K K K
Sbjct: 804 KRAAKKK 810
Score = 33.2 bits (76), Expect = 0.27
Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 6/88 (6%)
Query: 37 KKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEK--KKKKKRRTKKKEKNKNKSRK 94
+ K + K++K + KK K+++ K N + + + +KK + K +K+ K+
Sbjct: 730 APRNVGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKAKPKAAKKDARKA-- 787
Query: 95 EEKKKEAEEEKKKTKNKEKNKNKSRKEE 122
KK A+ +K K K K + E
Sbjct: 788 --KKPSAKTQKIAAATKAKRAAKKKVAE 813
Score = 30.1 bits (68), Expect = 2.9
Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRK--EEEEEKRTKKKEK 41
+ +K+ K K K+ +K +K K++K + KR KK+
Sbjct: 770 RGEKKAKPKAAKKDARKAKKPSAKTQKIAAATKAKRAAKKKV 811
>gnl|CDD|219408 pfam07423, DUF1510, Protein of unknown function (DUF1510). This
family consists of several hypothetical bacterial
proteins of around 200 residues in length. The function
of this family is unknown.
Length = 214
Score = 42.0 bits (99), Expect = 2e-04
Identities = 17/79 (21%), Positives = 49/79 (62%)
Query: 83 KKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEK 142
+ ++ +++K + ++ AE E+ K + KE ++ ++++ + +KE EE +++ ++ E+
Sbjct: 42 DQAAADEQEAKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEEDEE 101
Query: 143 NKNKSRKEEEEEEKKKKKK 161
+ +++ KE EE+ + +K
Sbjct: 102 SSDENEKETEEKTESNVEK 120
Score = 40.9 bits (96), Expect = 5e-04
Identities = 18/87 (20%), Positives = 44/87 (50%)
Query: 59 TKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKS 118
+ + K+ ++ + KE+ K + E+K+ + + EK+ +++E+N+ +
Sbjct: 40 PSDQAAADEQEAKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEED 99
Query: 119 RKEEEEKKKEAEEKKKKRTKKKEKNKN 145
+ +E +KE EEK + +K+ N +
Sbjct: 100 EESSDENEKETEEKTESNVEKEITNPS 126
Score = 40.5 bits (95), Expect = 6e-04
Identities = 20/88 (22%), Positives = 44/88 (50%)
Query: 84 KKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKN 143
+E KK + +E + + KE+ K + E++E K +AE++ ++ ++ E+
Sbjct: 39 SPSDQAAADEQEAKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEE 98
Query: 144 KNKSRKEEEEEEKKKKKKKKKKKRTKKK 171
+S E E+E ++K + +K+ T
Sbjct: 99 DEESSDENEKETEEKTESNVEKEITNPS 126
Score = 39.3 bits (92), Expect = 0.001
Identities = 17/77 (22%), Positives = 40/77 (51%)
Query: 97 KKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEK 156
+A ++++ K + + +E +E++KEA + K K + +++ +EE EEE
Sbjct: 40 PSDQAAADEQEAKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEED 99
Query: 157 KKKKKKKKKKRTKKKEE 173
++ + +K+ +K E
Sbjct: 100 EESSDENEKETEEKTES 116
Score = 37.0 bits (86), Expect = 0.008
Identities = 13/89 (14%), Positives = 44/89 (49%)
Query: 24 NKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTK 83
+ + +++ KK +++ +EE+K+ ++K + ++E ++ ++ +
Sbjct: 38 SSPSDQAAADEQEAKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEE 97
Query: 84 KKEKNKNKSRKEEKKKEAEEEKKKTKNKE 112
+ E++ +++ KE ++K +K+ N
Sbjct: 98 EDEESSDENEKETEEKTESNVEKEITNPS 126
Score = 36.6 bits (85), Expect = 0.011
Identities = 23/83 (27%), Positives = 49/83 (59%)
Query: 92 SRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEE 151
S ++ E+E KK+ ++E + + KEEE++ +E+K+ K +KE +++ EE
Sbjct: 38 SSPSDQAAADEQEAKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEE 97
Query: 152 EEEEKKKKKKKKKKKRTKKKEEE 174
E+EE + +K+ +++T+ E+
Sbjct: 98 EDEESSDENEKETEEKTESNVEK 120
Score = 35.5 bits (82), Expect = 0.025
Identities = 13/67 (19%), Positives = 39/67 (58%)
Query: 115 KNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEE 174
+++ +E+E KK +++ + + KE+ K + E++E++ +K+ ++ + ++E+E
Sbjct: 41 SDQAAADEQEAKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEEDE 100
Query: 175 KRKNEKA 181
+ +E
Sbjct: 101 ESSDENE 107
Score = 35.1 bits (81), Expect = 0.035
Identities = 15/84 (17%), Positives = 44/84 (52%)
Query: 3 NKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKK 62
+ ++ ++ KK + + +E +EE++ ++K++K + KE+E+ + ++
Sbjct: 38 SSPSDQAAADEQEAKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEE 97
Query: 63 EKNKNKNRKEEKKKKKKRRTKKKE 86
E ++ + E++ ++K +KE
Sbjct: 98 EDEESSDENEKETEEKTESNVEKE 121
Score = 35.1 bits (81), Expect = 0.035
Identities = 14/71 (19%), Positives = 40/71 (56%)
Query: 110 NKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTK 169
+ ++ + ++E +K + E + + K++EK S +E++ + +K+ ++ +++ +
Sbjct: 38 SSPSDQAAADEQEAKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEE 97
Query: 170 KKEEEKRKNEK 180
+ EE +NEK
Sbjct: 98 EDEESSDENEK 108
Score = 33.9 bits (78), Expect = 0.081
Identities = 18/94 (19%), Positives = 47/94 (50%), Gaps = 9/94 (9%)
Query: 64 KNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEE 123
+ + + +++ +++ +E + + KEE+K+ A E K+ K + +++ EE
Sbjct: 36 FPSSPSDQAAADEQEAKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEE--SEE 93
Query: 124 EKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKK 157
E ++E EE ++N+ ++ ++ E +K
Sbjct: 94 ENEEEDEE-------SSDENEKETEEKTESNVEK 120
Score = 33.6 bits (77), Expect = 0.13
Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 31 EEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKN 90
++ ++E K + ++ + EE K ++KE N KE+K +K + +E+N+
Sbjct: 41 SDQAAADEQEAKKSDDQETAEIEEVK--EEEKEAA-NSEDKEDKGDAEKEDEESEEENEE 97
Query: 91 KSRKEEKKKEAEEEKKKTKNKEK 113
+ + + E E E+K N EK
Sbjct: 98 EDEESSDENEKETEEKTESNVEK 120
Score = 33.2 bits (76), Expect = 0.16
Identities = 10/67 (14%), Positives = 40/67 (59%), Gaps = 3/67 (4%)
Query: 113 KNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKE 172
++ +++K ++++ E EE K ++KE ++ ++++ + EK+ ++ +++ + ++
Sbjct: 46 ADEQEAKKSDDQETAEIEEVK---EEEKEAANSEDKEDKGDAEKEDEESEEENEEEDEES 102
Query: 173 EEKRKNE 179
++ + E
Sbjct: 103 SDENEKE 109
Score = 30.5 bits (69), Expect = 1.1
Identities = 15/63 (23%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNK-SRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTK 60
+ EE K+++K ++K + KE+EE + ++E + + ++ EEK +
Sbjct: 59 TAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEEDEESSDENEKETEEKTESNV 118
Query: 61 KKE 63
+KE
Sbjct: 119 EKE 121
>gnl|CDD|227446 COG5116, RPN2, 26S proteasome regulatory complex component
[Posttranslational modification, protein turnover,
chaperones].
Length = 926
Score = 43.0 bits (101), Expect = 3e-04
Identities = 20/72 (27%), Positives = 28/72 (38%), Gaps = 7/72 (9%)
Query: 77 KKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKR 136
K R K+K K K +E K E + E + K+ EEK +A +
Sbjct: 792 KAAARAKQKPKEKG-PNDKEIKIE-----SPSVETEGERCT-IKQREEKGIDAPAILNVK 844
Query: 137 TKKKEKNKNKSR 148
KK K N +R
Sbjct: 845 KKKPYKVDNMTR 856
Score = 38.4 bits (89), Expect = 0.007
Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 1/66 (1%)
Query: 54 EKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEK 113
+ R K+K K K N +E K + + E+ K R+E+ K K K
Sbjct: 792 KAAARAKQKPKEKGPN-DKEIKIESPSVETEGERCTIKQREEKGIDAPAILNVKKKKPYK 850
Query: 114 NKNKSR 119
N +R
Sbjct: 851 VDNMTR 856
Score = 37.2 bits (86), Expect = 0.016
Identities = 17/73 (23%), Positives = 29/73 (39%), Gaps = 8/73 (10%)
Query: 11 KKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNR 70
K R K+K K K + KE + E + + E + K++ K + N
Sbjct: 792 KAAARAKQKPKEKGPNDKEIKIESPSVETEGERCTI--------KQREEKGIDAPAILNV 843
Query: 71 KEEKKKKKKRRTK 83
K++K K T+
Sbjct: 844 KKKKPYKVDNMTR 856
Score = 35.7 bits (82), Expect = 0.047
Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 5/64 (7%)
Query: 105 KKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKK 164
K + K+K K K ++E K E+ + + E+ K R+E+ + KKK
Sbjct: 792 KAAARAKQKPKEKGPN-DKEIKIESPSVETEG----ERCTIKQREEKGIDAPAILNVKKK 846
Query: 165 KKRT 168
K
Sbjct: 847 KPYK 850
Score = 34.2 bits (78), Expect = 0.13
Identities = 19/96 (19%), Positives = 36/96 (37%), Gaps = 2/96 (2%)
Query: 95 EEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEE 154
EE++ E ++ K K + K A K+K K+K N + + E
Sbjct: 761 EEEEFEYPRMYEEASGKSVRKVNTAVLSTTIKAAARAKQKP--KEKGPNDKEIKIESPSV 818
Query: 155 EKKKKKKKKKKKRTKKKEEEKRKNEKAVRLTKLSAF 190
E + ++ K++ K + N K + K+
Sbjct: 819 ETEGERCTIKQREEKGIDAPAILNVKKKKPYKVDNM 854
Score = 34.2 bits (78), Expect = 0.15
Identities = 12/58 (20%), Positives = 25/58 (43%)
Query: 119 RKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKR 176
+K +E+ + E K + + + E + ++ EE+ KKK+ K + R
Sbjct: 799 QKPKEKGPNDKEIKIESPSVETEGERCTIKQREEKGIDAPAILNVKKKKPYKVDNMTR 856
Score = 33.0 bits (75), Expect = 0.32
Identities = 11/56 (19%), Positives = 21/56 (37%)
Query: 9 KKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEK 64
K + + K KEK N + E + E+ + + + + KK+K
Sbjct: 792 KAAARAKQKPKEKGPNDKEIKIESPSVETEGERCTIKQREEKGIDAPAILNVKKKK 847
Score = 32.2 bits (73), Expect = 0.54
Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 5/59 (8%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKN-----KNKSRKEEEK 55
K K+K K++ KE E E E+ T K+ + K N +K+ K
Sbjct: 792 KAAARAKQKPKEKGPNDKEIKIESPSVETEGERCTIKQREEKGIDAPAILNVKKKKPYK 850
Score = 32.2 bits (73), Expect = 0.61
Identities = 10/64 (15%), Positives = 23/64 (35%), Gaps = 4/64 (6%)
Query: 37 KKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEE 96
+K K K ++E K + E + +++++K N +K+
Sbjct: 793 AAARAKQKPKEKGPNDKEIKIESPSVETEGERCTIKQREEK----GIDAPAILNVKKKKP 848
Query: 97 KKKE 100
K +
Sbjct: 849 YKVD 852
Score = 31.8 bits (72), Expect = 0.81
Identities = 12/62 (19%), Positives = 24/62 (38%)
Query: 8 KKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKN 67
K + ++ K++ +K K E T+ + K + + + KKK+ K
Sbjct: 792 KAAARAKQKPKEKGPNDKEIKIESPSVETEGERCTIKQREEKGIDAPAILNVKKKKPYKV 851
Query: 68 KN 69
N
Sbjct: 852 DN 853
Score = 28.4 bits (63), Expect = 8.0
Identities = 13/65 (20%), Positives = 27/65 (41%), Gaps = 5/65 (7%)
Query: 34 KRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKK-----KKRRTKKKEKN 88
K + ++ K K + KE + + + + E + ++ E+K + KK K
Sbjct: 792 KAAARAKQKPKEKGPNDKEIKIESPSVETEGERCTIKQREEKGIDAPAILNVKKKKPYKV 851
Query: 89 KNKSR 93
N +R
Sbjct: 852 DNMTR 856
>gnl|CDD|220684 pfam10310, DUF2413, Protein of unknown function (DUF2413). This is
a family of proteins conserved in fungi. The function is
not known.
Length = 436
Score = 42.5 bits (100), Expect = 3e-04
Identities = 22/112 (19%), Positives = 38/112 (33%), Gaps = 12/112 (10%)
Query: 30 EEEEKRTKKKEKNKKNKNKSRKEE------------EKKKRTKKKEKNKNKNRKEEKKKK 77
+E+ TKK +K +K+ + +E EK K KK ++ KK
Sbjct: 9 PDEKAPTKKPKKGDASKDSTEDDEDILEFLDELEQSEKAKPPKKPKEASRPGTPRNPKKS 68
Query: 78 KKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEA 129
K ++ K K K E+ +++ +E EE
Sbjct: 69 SKPTESSAASSEEKPAKPRKSAESTRSSHPKSKAPSTESEEEEEPEETPDPI 120
Score = 36.3 bits (84), Expect = 0.028
Identities = 21/103 (20%), Positives = 36/103 (34%), Gaps = 1/103 (0%)
Query: 74 KKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKK-EAEEK 132
KK KK K ++ E + + EK K K K ++ KK + E
Sbjct: 15 TKKPKKGDASKDSTEDDEDILEFLDELEQSEKAKPPKKPKEASRPGTPRNPKKSSKPTES 74
Query: 133 KKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEK 175
+++K KS + K K + + ++ EE
Sbjct: 75 SAASSEEKPAKPRKSAESTRSSHPKSKAPSTESEEEEEPEETP 117
Score = 31.3 bits (71), Expect = 0.89
Identities = 13/72 (18%), Positives = 26/72 (36%), Gaps = 2/72 (2%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKK 61
K + KK K+ +N KS K E + +++ K K+ + K
Sbjct: 44 SEKAKPPKKPKEASRPGTPRNPKKSSKPTESSAASSEEKPAKPRKSA--ESTRSSHPKSK 101
Query: 62 KEKNKNKNRKEE 73
+++ +E
Sbjct: 102 APSTESEEEEEP 113
>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein.
Length = 529
Score = 42.1 bits (99), Expect = 4e-04
Identities = 23/62 (37%), Positives = 39/62 (62%)
Query: 121 EEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEK 180
E+E +E EE+K+++ +++EK +K + +EEEEK++KKKK KK + E E K
Sbjct: 32 EKEVPDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTTEWELLNKTK 91
Query: 181 AV 182
+
Sbjct: 92 PI 93
Score = 37.4 bits (87), Expect = 0.012
Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 5/68 (7%)
Query: 91 KSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKE 150
K ++E E EEE+K+ K +E+ K ++EE ++++E EEKKKK K KE E
Sbjct: 29 KEVEKEVPDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETT-----TE 83
Query: 151 EEEEEKKK 158
E K K
Sbjct: 84 WELLNKTK 91
Score = 35.9 bits (83), Expect = 0.033
Identities = 22/58 (37%), Positives = 41/58 (70%), Gaps = 2/58 (3%)
Query: 122 EEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNE 179
E EK+ EE+++++ +KKE+ + + KEEE +E+++K++KK K+TKK +E + E
Sbjct: 30 EVEKEVPDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKK--KKTKKVKETTTEWE 85
Score = 35.9 bits (83), Expect = 0.033
Identities = 18/64 (28%), Positives = 36/64 (56%)
Query: 96 EKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEE 155
EK+ E E ++ + +++ K + ++ +K++E +E+++K KKK+ K K E E
Sbjct: 28 EKEVEKEVPDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTTEWELL 87
Query: 156 KKKK 159
K K
Sbjct: 88 NKTK 91
Score = 35.5 bits (82), Expect = 0.053
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 8/70 (11%)
Query: 108 TKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKR 167
K EK +EEE+++K+ EE+K +++ +EEEE+++KKKK KK K
Sbjct: 28 EKEVEKEVPDEEEEEEKEEKKEEEEKTTDKEEEV--------DEEEEKEEKKKKTKKVKE 79
Query: 168 TKKKEEEKRK 177
T + E K
Sbjct: 80 TTTEWELLNK 89
Score = 32.8 bits (75), Expect = 0.38
Identities = 22/55 (40%), Positives = 30/55 (54%)
Query: 19 KEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEE 73
KE K +EEEEEK KK+E+ K + +EE++K KKK+ K K E
Sbjct: 29 KEVEKEVPDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTTE 83
Score = 32.0 bits (73), Expect = 0.56
Identities = 24/81 (29%), Positives = 43/81 (53%)
Query: 6 EEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKN 65
EE++++K+ + +++EK +K + +EEE++ +KK+K KK K + + E K +N
Sbjct: 38 EEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTTEWELLNKTKPIWTRN 97
Query: 66 KNKNRKEEKKKKKKRRTKKKE 86
KEE K T E
Sbjct: 98 PKDVTKEEYAAFYKSLTNDWE 118
Score = 29.7 bits (67), Expect = 2.7
Identities = 18/55 (32%), Positives = 36/55 (65%), Gaps = 3/55 (5%)
Query: 72 EEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKK 126
EE++++K+ + +++EK +K + ++++E EE+KKKTK K K + + E K
Sbjct: 38 EEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTK---KVKETTTEWELLNK 89
Score = 28.6 bits (64), Expect = 7.1
Identities = 19/56 (33%), Positives = 34/56 (60%)
Query: 86 EKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKE 141
EK K +E+++E +EEKK+ + K +K + EEEEK+++ ++ KK + E
Sbjct: 28 EKEVEKEVPDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTTE 83
Score = 28.2 bits (63), Expect = 9.6
Identities = 18/40 (45%), Positives = 28/40 (70%)
Query: 141 EKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEK 180
EK K +EEEEE+K++KK++++K T K+EE + EK
Sbjct: 28 EKEVEKEVPDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEK 67
>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682). The
members of this family are all hypothetical eukaryotic
proteins of unknown function. One member is described as
being an adipocyte-specific protein, but no evidence of
this was found.
Length = 322
Score = 41.9 bits (99), Expect = 4e-04
Identities = 18/71 (25%), Positives = 42/71 (59%), Gaps = 3/71 (4%)
Query: 39 KEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKK 98
+ + +K+R+EEE+K K + + + ++KK++K++ +++ K S +E++K
Sbjct: 254 SPEVLRKVDKTREEEEEKIL---KAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQRK 310
Query: 99 KEAEEEKKKTK 109
E +E KK+ +
Sbjct: 311 LEEKERKKQAR 321
Score = 41.5 bits (98), Expect = 5e-04
Identities = 21/68 (30%), Positives = 43/68 (63%)
Query: 73 EKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEK 132
+ +K +T+++E+ K EE+++E +EKK+ K KE+ + K K E++++ EEK
Sbjct: 255 PEVLRKVDKTREEEEEKILKAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQRKLEEK 314
Query: 133 KKKRTKKK 140
++K+ +K
Sbjct: 315 ERKKQARK 322
Score = 39.9 bits (94), Expect = 0.002
Identities = 20/66 (30%), Positives = 42/66 (63%), Gaps = 2/66 (3%)
Query: 105 KKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKK 164
+K K +E+ + K K EE+++E ++KK+ KK+E+ + + EE++K ++K++
Sbjct: 259 RKVDKTREEEEEKILKAAEEERQEEAQEKKEEKKKEEREAKLA--KLSPEEQRKLEEKER 316
Query: 165 KKRTKK 170
KK+ +K
Sbjct: 317 KKQARK 322
Score = 33.8 bits (78), Expect = 0.13
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 7/76 (9%)
Query: 4 KKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKE 63
E +K K R +++E+ K+ +EE +E+ +KKE+ KK +E E K E
Sbjct: 254 SPEVLRKVDKTR-EEEEEKILKAAEEERQEEAQEKKEEKKK------EEREAKLAKLSPE 306
Query: 64 KNKNKNRKEEKKKKKK 79
+ + KE KK+ +K
Sbjct: 307 EQRKLEEKERKKQARK 322
Score = 33.4 bits (77), Expect = 0.17
Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 6/61 (9%)
Query: 126 KKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKK------EEEKRKNE 179
E K K +++E+ K+ +EE +EE ++KK++KKK+ + K EE+++ E
Sbjct: 254 SPEVLRKVDKTREEEEEKILKAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQRKLEE 313
Query: 180 K 180
K
Sbjct: 314 K 314
Score = 33.0 bits (76), Expect = 0.26
Identities = 18/58 (31%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 132 KKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKAVRLTKLSA 189
K + + + +K+R+EEEE+ K +++++++ +KKEE+K++ +A +L KLS
Sbjct: 249 ANLKLSPEVLRKVDKTREEEEEKILKAAEEERQEEAQEKKEEKKKEEREA-KLAKLSP 305
Score = 28.4 bits (64), Expect = 7.7
Identities = 11/45 (24%), Positives = 30/45 (66%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNK 46
+ +++E+ ++KK KK+E+ ++ EE+++ ++KE+ K+ +
Sbjct: 277 EEERQEEAQEKKEEKKKEEREAKLAKLSPEEQRKLEEKERKKQAR 321
>gnl|CDD|224495 COG1579, COG1579, Zn-ribbon protein, possibly nucleic acid-binding
[General function prediction only].
Length = 239
Score = 41.2 bits (97), Expect = 5e-04
Identities = 29/148 (19%), Positives = 69/148 (46%), Gaps = 3/148 (2%)
Query: 27 RKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKE 86
KE + + K E NK E E + + + +++ ++ ++ K+
Sbjct: 26 IKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAV 85
Query: 87 KNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTK-KKEKNKN 145
K++ + R + + +E+ + E + +E E+ +KE E+ K++ + +K +
Sbjct: 86 KDERELRALNIEIQIAKERINSLEDELAE--LMEEIEKLEKEIEDLKERLERLEKNLAEA 143
Query: 146 KSRKEEEEEEKKKKKKKKKKKRTKKKEE 173
++R EEE E +++ ++ KR + KE+
Sbjct: 144 EARLEEEVAEIREEGQELSSKREELKEK 171
Score = 37.0 bits (86), Expect = 0.012
Identities = 35/164 (21%), Positives = 74/164 (45%), Gaps = 6/164 (3%)
Query: 6 EEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKN 65
K+ +K + K E E E + + + + +++ ++ E+ KR ++K
Sbjct: 25 RIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSA 84
Query: 66 KNKNR------KEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSR 119
R E + K++ + + E + E+ +KE E+ K++ + EKN ++
Sbjct: 85 VKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAE 144
Query: 120 KEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKK 163
EE+ E E+ ++ + K+E+ K K E E ++ +K KK
Sbjct: 145 ARLEEEVAEIREEGQELSSKREELKEKLDPELLSEYERIRKNKK 188
Score = 32.7 bits (75), Expect = 0.26
Identities = 21/137 (15%), Positives = 49/137 (35%), Gaps = 8/137 (5%)
Query: 41 KNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKE 100
K KE K + K E E + + + + + +++ ++ ++ +
Sbjct: 17 LEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIK 76
Query: 101 AEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKK 160
+ +EK + E + K+R E + +E E+ EK+ +
Sbjct: 77 --------RAEEKLSAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIED 128
Query: 161 KKKKKKRTKKKEEEKRK 177
K++ +R +K E
Sbjct: 129 LKERLERLEKNLAEAEA 145
Score = 30.8 bits (70), Expect = 1.2
Identities = 26/127 (20%), Positives = 50/127 (39%), Gaps = 5/127 (3%)
Query: 66 KNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEK 125
K+R E + K+ ++ KK + K + E E + +N+ +E E+
Sbjct: 17 LEKDRLEPRIKEIRKALKKAKAELEALNK--ALEALEIELEDLENQVSQLESEIQEIRER 74
Query: 126 KKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKK---KKKKRTKKKEEEKRKNEKAV 182
K AEEK ++E + +E + + ++ K ++E + E+
Sbjct: 75 IKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLE 134
Query: 183 RLTKLSA 189
RL K A
Sbjct: 135 RLEKNLA 141
>gnl|CDD|130141 TIGR01069, mutS2, MutS2 family protein. Function of MutS2 is
unknown. It should not be considered a DNA mismatch
repair protein. It is likely a DNA mismatch binding
protein of unknown cellular function [DNA metabolism,
Other].
Length = 771
Score = 41.7 bits (98), Expect = 6e-04
Identities = 38/184 (20%), Positives = 75/184 (40%), Gaps = 14/184 (7%)
Query: 3 NKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKK 62
N EK ++ ++K ++ K KE+E+ K K+ + + + K R+ +K + K+
Sbjct: 514 NVLIEKLSALEKELEQKNEHLEKLLKEQEKLK---KELEQEMEELKERERNKKLELEKEA 570
Query: 63 EKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEE 122
++ +KE + ++ + KK K K E+ K +E K+K K N + +
Sbjct: 571 QEALKALKKEVESIIRELKEKKIHKAKEIKSIEDLVKL-KETKQKIPQKPTNFQADKIGD 629
Query: 123 EEKKKEAEEKKKKRTKKKEKNKN----------KSRKEEEEEEKKKKKKKKKKKRTKKKE 172
+ + + +K K N + E+ + KK K K TK +
Sbjct: 630 KVRIRYFGQKGKIVQILGGNKWNVTVGGMRMKVHGSELEKINKAPPPKKFKVPKTTKPEP 689
Query: 173 EEKR 176
+E
Sbjct: 690 KEAS 693
Score = 41.3 bits (97), Expect = 9e-04
Identities = 32/152 (21%), Positives = 63/152 (41%), Gaps = 2/152 (1%)
Query: 19 KEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKK 78
+ K KEE K K+ + K+ E+ K +K +K + +E K++++
Sbjct: 501 QAKTFYGEFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERER 560
Query: 79 KRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTK 138
++ + +++ + + KKE E ++ K K+ +K K K E+ K E K+K K
Sbjct: 561 NKKLELEKEAQEALKA--LKKEVESIIRELKEKKIHKAKEIKSIEDLVKLKETKQKIPQK 618
Query: 139 KKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKK 170
+K + +K K + K
Sbjct: 619 PTNFQADKIGDKVRIRYFGQKGKIVQILGGNK 650
Score = 41.3 bits (97), Expect = 0.001
Identities = 28/131 (21%), Positives = 60/131 (45%), Gaps = 9/131 (6%)
Query: 51 KEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKN 110
K +K ++K ++ K KE++K KK+ + +E R+ KK E E+E ++
Sbjct: 519 KLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELK---ERERNKKLELEKEAQEALK 575
Query: 111 KEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKK 170
+KE E +E +EKK + K+ + ++ + +E +++ +K + +
Sbjct: 576 A------LKKEVESIIRELKEKKIHKAKEIKSIEDLVKLKETKQKIPQKPTNFQADKIGD 629
Query: 171 KEEEKRKNEKA 181
K + +K
Sbjct: 630 KVRIRYFGQKG 640
Score = 39.8 bits (93), Expect = 0.002
Identities = 26/109 (23%), Positives = 52/109 (47%), Gaps = 4/109 (3%)
Query: 75 KKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKK 134
+ K K+E N + +KE E++ + + K + K +KE E++ +E +E+++
Sbjct: 501 QAKTFYGEFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERER 560
Query: 135 KRTKKKEKNK----NKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNE 179
+ + EK +KE E ++ K+KK K + K E+ K +
Sbjct: 561 NKKLELEKEAQEALKALKKEVESIIRELKEKKIHKAKEIKSIEDLVKLK 609
Score = 37.5 bits (87), Expect = 0.012
Identities = 35/122 (28%), Positives = 63/122 (51%), Gaps = 6/122 (4%)
Query: 83 KKKEKNKNKSRKEEKKKEAEEEKKKTKNK-EKNKNKSRKEEEEKKKEAEEKKKKRTKKKE 141
+KE + E+ KE E+ KK+ + + E+ K + R ++ E +KEA+E K K+ E
Sbjct: 523 LEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNKKLELEKEAQEALKALKKEVE 582
Query: 142 K--NKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKAVRLT---KLSAFGISGYL 196
+ K +K + +E K + K K TK+K +K N +A ++ ++ FG G +
Sbjct: 583 SIIRELKEKKIHKAKEIKSIEDLVKLKETKQKIPQKPTNFQADKIGDKVRIRYFGQKGKI 642
Query: 197 LQ 198
+Q
Sbjct: 643 VQ 644
Score = 30.2 bits (68), Expect = 2.2
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
Query: 111 KEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEK---KKKKKKKKKKR 167
+ K KEE E +K ++K ++ K KE+E+ +K ++ ++ K+++R
Sbjct: 501 QAKTFYGEFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERER 560
Query: 168 TKKKEEEKRKNEKAVRLTKLSA 189
KK E EK E L K
Sbjct: 561 NKKLELEKEAQEALKALKKEVE 582
>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer
membranes [Cell envelope biogenesis, outer membrane].
Length = 244
Score = 40.5 bits (95), Expect = 7e-04
Identities = 21/128 (16%), Positives = 39/128 (30%), Gaps = 3/128 (2%)
Query: 51 KEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKN 110
EE + + E+ + E + K++ K K+ K K + K K K
Sbjct: 52 PTEEPQPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKV 111
Query: 111 KEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKK 170
K + K K + K A + R + S ++ +R +
Sbjct: 112 KPQPKPKKPPSKTAAKAPAAPNQPARP---PSAASASGAATGPSASYLSGLRRAIRRAPR 168
Query: 171 KEEEKRKN 178
+ R
Sbjct: 169 YPAQARAR 176
Score = 38.2 bits (89), Expect = 0.004
Identities = 28/124 (22%), Positives = 44/124 (35%), Gaps = 13/124 (10%)
Query: 91 KSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKE 150
+ + + + E EE+ K + + + K KE + +KK K K K K
Sbjct: 52 PTEEPQPEPEPPEEQPKPPTEPETP---PEPTPPKPKEKPKPEKKPKKPKPKPK------ 102
Query: 151 EEEEEKKKKKKKKKKKR--TKKKEEEKRKNEKAVRLTKLSAFGISGYLLQWIRNFLSGWI 208
+ K K K K + K K K SA SG ++LSG
Sbjct: 103 --PKPKPKPKVKPQPKPKKPPSKTAAKAPAAPNQPARPPSAASASGAATGPSASYLSGLR 160
Query: 209 QIVR 212
+ +R
Sbjct: 161 RAIR 164
Score = 37.1 bits (86), Expect = 0.009
Identities = 22/79 (27%), Positives = 34/79 (43%)
Query: 29 EEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKN 88
E E+ + E ++ + E + T K K K K K+ KK K K + K K K
Sbjct: 50 EAPTEEPQPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKP 109
Query: 89 KNKSRKEEKKKEAEEEKKK 107
K K + + KK ++ K
Sbjct: 110 KVKPQPKPKKPPSKTAAKA 128
Score = 36.3 bits (84), Expect = 0.020
Identities = 15/84 (17%), Positives = 35/84 (41%)
Query: 63 EKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEE 122
E + + E + +++ + + + + + K++ + EKK K K K K K + +
Sbjct: 50 EAPTEEPQPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKP 109
Query: 123 EEKKKEAEEKKKKRTKKKEKNKNK 146
+ K + +K +T K
Sbjct: 110 KVKPQPKPKKPPSKTAAKAPAAPN 133
Score = 33.6 bits (77), Expect = 0.14
Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 1/79 (1%)
Query: 15 RTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEE-KKKRTKKKEKNKNKNRKEE 73
+ E + + + E T + K K K + E++ KK + K K K K K + +
Sbjct: 54 EEPQPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKVKP 113
Query: 74 KKKKKKRRTKKKEKNKNKS 92
+ K KK +K K
Sbjct: 114 QPKPKKPPSKTAAKAPAAP 132
Score = 32.5 bits (74), Expect = 0.31
Identities = 17/88 (19%), Positives = 30/88 (34%), Gaps = 2/88 (2%)
Query: 95 EEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEE 154
++ E EE + E E +++ K + +
Sbjct: 26 LHQEDFVGIELVPLAVFLLAAKVLEAPTEEPQPEPEPPEEQ--PKPPTEPETPPEPTPPK 83
Query: 155 EKKKKKKKKKKKRTKKKEEEKRKNEKAV 182
K+K K +KK K+ K K + K K + V
Sbjct: 84 PKEKPKPEKKPKKPKPKPKPKPKPKPKV 111
Score = 32.1 bits (73), Expect = 0.43
Identities = 17/78 (21%), Positives = 31/78 (39%), Gaps = 6/78 (7%)
Query: 103 EEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKK 162
+ T+ + ++ + + + K KEK K E++ KK K K
Sbjct: 48 VLEAPTEEPQPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPK------PEKKPKKPKPKP 101
Query: 163 KKKKRTKKKEEEKRKNEK 180
K K + K K + + K +K
Sbjct: 102 KPKPKPKPKVKPQPKPKK 119
Score = 30.1 bits (68), Expect = 1.9
Identities = 15/66 (22%), Positives = 23/66 (34%)
Query: 4 KKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKE 63
+E+ K + T + K + E+K K K K K K + + K K
Sbjct: 63 PEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKVKPQPKPKKPPS 122
Query: 64 KNKNKN 69
K K
Sbjct: 123 KTAAKA 128
Score = 29.4 bits (66), Expect = 2.7
Identities = 14/80 (17%), Positives = 26/80 (32%), Gaps = 1/80 (1%)
Query: 5 KEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEK 64
+ + + + + K + + + K K EK K K + K K K K +
Sbjct: 56 PQPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPK-PKVKPQ 114
Query: 65 NKNKNRKEEKKKKKKRRTKK 84
K K + K +
Sbjct: 115 PKPKKPPSKTAAKAPAAPNQ 134
Score = 28.6 bits (64), Expect = 5.1
Identities = 14/89 (15%), Positives = 24/89 (26%), Gaps = 7/89 (7%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKK 61
K K E+K KK K + K K K K K + + + +K K
Sbjct: 87 KPKPEKKPKKPKPKPKPKPKPKPKVKPQPKPKKPPSKTAAKAPAAPNQPA-------RPP 139
Query: 62 KEKNKNKNRKEEKKKKKKRRTKKKEKNKN 90
+ + + +
Sbjct: 140 SAASASGAATGPSASYLSGLRRAIRRAPR 168
>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family. Atrophin-1 is the
protein product of the dentatorubral-pallidoluysian
atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive
neurodegenerative disorder. It is caused by the
expansion of a CAG repeat in the DRPLA gene on
chromosome 12p. This results in an extended
polyglutamine region in atrophin-1, that is thought to
confer toxicity to the protein, possibly through
altering its interactions with other proteins. The
expansion of a CAG repeat is also the underlying defect
in six other neurodegenerative disorders, including
Huntington's disease. One interaction of expanded
polyglutamine repeats that is thought to be pathogenic
is that with the short glutamine repeat in the
transcriptional coactivator CREB binding protein, CBP.
This interaction draws CBP away from its usual nuclear
location to the expanded polyglutamine repeat protein
aggregates that are characteristic of the polyglutamine
neurodegenerative disorders. This interferes with
CBP-mediated transcription and causes cytotoxicity.
Length = 979
Score = 41.2 bits (96), Expect = 9e-04
Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 7/59 (11%)
Query: 83 KKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKE 141
KK+E+ K+++E ++K EE +E+ K K ++ E E+++EAE K + E
Sbjct: 579 KKREEAVEKAKREAEQKAREE-------REREKEKEKEREREREREAERAAKASSSSHE 630
Score = 40.1 bits (93), Expect = 0.002
Identities = 14/49 (28%), Positives = 37/49 (75%), Gaps = 1/49 (2%)
Query: 135 KRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKAVR 183
K KK+E+ K+++E E++ +++++++K+K++ +++E E R+ E+A +
Sbjct: 576 KLAKKREEAVEKAKREAEQKAREEREREKEKEKERERERE-REAERAAK 623
Score = 40.1 bits (93), Expect = 0.002
Identities = 18/50 (36%), Positives = 32/50 (64%), Gaps = 2/50 (4%)
Query: 57 KRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKK 106
K KK+E+ K ++E ++K ++ R ++KEK K + R E+++EAE K
Sbjct: 576 KLAKKREEAVEKAKREAEQKAREEREREKEKEKERER--EREREAERAAK 623
Score = 40.1 bits (93), Expect = 0.002
Identities = 20/45 (44%), Positives = 31/45 (68%), Gaps = 2/45 (4%)
Query: 117 KSRKEEEEK-KKEAEEK-KKKRTKKKEKNKNKSRKEEEEEEKKKK 159
K R+E EK K+EAE+K +++R ++KEK K + R+ E E E+ K
Sbjct: 579 KKREEAVEKAKREAEQKAREEREREKEKEKEREREREREAERAAK 623
Score = 37.4 bits (86), Expect = 0.015
Identities = 14/42 (33%), Positives = 31/42 (73%)
Query: 134 KKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEK 175
KKR + EK K ++ ++ EE +++K+K+K+++R +++E E+
Sbjct: 579 KKREEAVEKAKREAEQKAREEREREKEKEKEREREREREAER 620
Score = 37.4 bits (86), Expect = 0.016
Identities = 15/57 (26%), Positives = 35/57 (61%)
Query: 17 KKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEE 73
KK+E+ K+++E E++ R +++ + +K K + R+ E + +R K + +++R E
Sbjct: 579 KKREEAVEKAKREAEQKAREEREREKEKEKEREREREREAERAAKASSSSHESRMSE 635
Score = 36.2 bits (83), Expect = 0.034
Identities = 17/61 (27%), Positives = 36/61 (59%), Gaps = 5/61 (8%)
Query: 92 SRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEE 151
S+ +K++EA E K K + + K+R+E E +K++ +E++++R ++ E+ S
Sbjct: 575 SKLAKKREEAVE-----KAKREAEQKAREEREREKEKEKEREREREREAERAAKASSSSH 629
Query: 152 E 152
E
Sbjct: 630 E 630
Score = 35.4 bits (81), Expect = 0.052
Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Query: 4 KKEEKKKKKKRRTKKK---EKNKNKSRKEEEEEKRTKKKEKNKKNKNKS 49
K+EE +K KR ++K E+ + K +++E E +R ++ E+ K + S
Sbjct: 580 KREEAVEKAKREAEQKAREEREREKEKEKEREREREREAERAAKASSSS 628
Score = 35.4 bits (81), Expect = 0.063
Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 12/58 (20%)
Query: 124 EKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKA 181
+K++EA EK K+ ++ K+R+E E E K+K+K+R +++E E + KA
Sbjct: 579 KKREEAVEKAKREAEQ------KAREERERE------KEKEKEREREREREAERAAKA 624
Score = 35.0 bits (80), Expect = 0.068
Identities = 17/51 (33%), Positives = 33/51 (64%), Gaps = 4/51 (7%)
Query: 34 KRTKKKEKNKKNKNKSRKEEEKKKRT-KKKEKNKNKNRKEEKKKKKKRRTK 83
K KK+E+ + K+++E E+K R +++EK K K R+ E++++ +R K
Sbjct: 576 KLAKKREEAVE---KAKREAEQKAREEREREKEKEKEREREREREAERAAK 623
Score = 34.3 bits (78), Expect = 0.13
Identities = 14/37 (37%), Positives = 24/37 (64%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKK 38
K K+E ++K ++ R ++KEK K + R+ E E +R K
Sbjct: 587 KAKREAEQKAREEREREKEKEKEREREREREAERAAK 623
Score = 34.3 bits (78), Expect = 0.14
Identities = 12/46 (26%), Positives = 30/46 (65%)
Query: 49 SRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRK 94
++K EE ++ K++ + K + +E +K+K+K R +++E+ ++ K
Sbjct: 578 AKKREEAVEKAKREAEQKAREEREREKEKEKEREREREREAERAAK 623
Score = 33.9 bits (77), Expect = 0.16
Identities = 11/46 (23%), Positives = 30/46 (65%)
Query: 26 SRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRK 71
++K EE ++ K++ + K + + R++E++K+R +++E+ + K
Sbjct: 578 AKKREEAVEKAKREAEQKAREEREREKEKEKEREREREREAERAAK 623
Score = 33.9 bits (77), Expect = 0.17
Identities = 13/45 (28%), Positives = 28/45 (62%)
Query: 33 EKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKK 77
+KR + EK K+ + +EE ++++ K+KE+ + + R+ E+ K
Sbjct: 579 KKREEAVEKAKREAEQKAREEREREKEKEKEREREREREAERAAK 623
Score = 33.9 bits (77), Expect = 0.20
Identities = 15/61 (24%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 70 RKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEA 129
+K E+ +K +R +++ + + R++EK+KE E E++ + E+ S E + E
Sbjct: 579 KKREEAVEKAKREAEQKAREEREREKEKEKERERERE--REAERAAKASSSSHESRMSEP 636
Query: 130 E 130
+
Sbjct: 637 Q 637
Score = 33.1 bits (75), Expect = 0.33
Identities = 16/69 (23%), Positives = 33/69 (47%)
Query: 88 NKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKS 147
+K +S K+ KK EE K+ ++ + K + EE ++ +K K + + + ++
Sbjct: 57 SKAESTKKPNKKIKEEATSPLKSTKRQREKPASDTEEPERVTAKKSKTQELSRPNSPSEG 116
Query: 148 RKEEEEEEK 156
E E E +
Sbjct: 117 EGEGEGEGE 125
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 1096
Score = 41.1 bits (96), Expect = 0.001
Identities = 33/151 (21%), Positives = 71/151 (47%), Gaps = 10/151 (6%)
Query: 5 KEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEK 64
K E + + R+ + E KE+E+E + E + K + E K + + +
Sbjct: 752 KHEVETEGDRKETEHEGETEAEGKEDEDEGEIQAGEDGE---MKGDEGAEGKVEHEGETE 808
Query: 65 NKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEE 124
K+ E + + + T+ K++ + E + EA++++K + +EEEE
Sbjct: 809 AGEKDEHEGQSETQADDTEVKDETGEQELNAENQGEAKQDEKGVDGGGGSDGGDSEEEEE 868
Query: 125 KKKEAEEKKKKRTKKKEKNKNKSRKEEEEEE 155
+++E EE++++ +++E +EEE EE
Sbjct: 869 EEEEEEEEEEEEEEEEE-------EEEENEE 892
Score = 40.7 bits (95), Expect = 0.001
Identities = 34/179 (18%), Positives = 77/179 (43%), Gaps = 14/179 (7%)
Query: 7 EKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNK 66
E + ++ + E K E E + +K+ +++ KE+E + + E +
Sbjct: 731 EIETGEEGEEVEDEGEGEAEGKHEVETEGDRKETEHEGETEAEGKEDEDEGEIQAGEDGE 790
Query: 67 NKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKN-KNKSRKEEEEK 125
K + + K + + + + E + + E K +T +E N +N+ +++EK
Sbjct: 791 MKGDEGAEGKVEHEGETEAGEKDEHEGQSETQADDTEVKDETGEQELNAENQGEAKQDEK 850
Query: 126 KKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKAVRL 184
+ ++E+ + + +EEEEEE +++EEE+ +NE+ + L
Sbjct: 851 GVDGGGGSDGGDSEEEEEEEEEEEEEEEEE-------------EEEEEEEEENEEPLSL 896
Score = 39.6 bits (92), Expect = 0.003
Identities = 26/141 (18%), Positives = 60/141 (42%), Gaps = 12/141 (8%)
Query: 23 KNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKN--------KNKNRKEEK 74
++ + EE +R + E ++ E+E + TK + ++ K + E +
Sbjct: 639 EHTGERTGEEGERPTEAEGENGEESGGEAEQEGETETKGENESEGEIPAERKGEQEGEGE 698
Query: 75 KKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKK 134
+ K+ K + + + + E + E E++ + + E+ + + E+E + EAE K +
Sbjct: 699 IEAKEADHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGE----EVEDEGEGEAEGKHE 754
Query: 135 KRTKKKEKNKNKSRKEEEEEE 155
T+ K + E E +
Sbjct: 755 VETEGDRKETEHEGETEAEGK 775
Score = 36.1 bits (83), Expect = 0.039
Identities = 33/186 (17%), Positives = 88/186 (47%), Gaps = 6/186 (3%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKN---KNKSRKEEEKKKR 58
++ E ++ +R T+ + +N +S E E+E T+ K +N+ + + E+E +
Sbjct: 639 EHTGERTGEEGERPTEAEGENGEESGGEAEQEGETETKGENESEGEIPAERKGEQEGEGE 698
Query: 59 TKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKK---KTKNKEKNK 115
+ KE + + E+ + + + +++ + E+ +E E+E + + K++ + +
Sbjct: 699 IEAKEADHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGKHEVETE 758
Query: 116 NKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEK 175
++ E E + EAE K+ + + + ++ K +E E K + + + + K + E +
Sbjct: 759 GDRKETEHEGETEAEGKEDEDEGEIQAGEDGEMKGDEGAEGKVEHEGETEAGEKDEHEGQ 818
Query: 176 RKNEKA 181
+ +
Sbjct: 819 SETQAD 824
Score = 34.2 bits (78), Expect = 0.14
Identities = 28/182 (15%), Positives = 73/182 (40%), Gaps = 4/182 (2%)
Query: 6 EEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKN----KKNKNKSRKEEEKKKRTKK 61
E ++ + +E ++ E E K + E +K + + E E K+ K
Sbjct: 648 EGERPTEAEGENGEESGGEAEQEGETETKGENESEGEIPAERKGEQEGEGEIEAKEADHK 707
Query: 62 KEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKE 121
E + E + + + + + + + + E + E E E K E ++ ++ E
Sbjct: 708 GETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGKHEVETEGDRKETEHE 767
Query: 122 EEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKA 181
E + + E++ + + E + K + E + + + + + +K + + E + ++
Sbjct: 768 GETEAEGKEDEDEGEIQAGEDGEMKGDEGAEGKVEHEGETEAGEKDEHEGQSETQADDTE 827
Query: 182 VR 183
V+
Sbjct: 828 VK 829
Score = 33.4 bits (76), Expect = 0.27
Identities = 27/167 (16%), Positives = 69/167 (41%), Gaps = 6/167 (3%)
Query: 8 KKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKN 67
K K+ K++ ++ K +K ++ + EE ++ + E
Sbjct: 603 KWNKQIELWVKEQLSRRPVAKVMALGDLSKGDVAEAEHTGERTGEEGERPTEAEGENG-- 660
Query: 68 KNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKK 127
EE + ++ + + K +N+S E + E++ + + + K + + E E+ +
Sbjct: 661 ----EESGGEAEQEGETETKGENESEGEIPAERKGEQEGEGEIEAKEADHKGETEAEEVE 716
Query: 128 EAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEE 174
E + + T+ + + + EE E+E + + + K + T+ +E
Sbjct: 717 HEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGKHEVETEGDRKE 763
Score = 33.0 bits (75), Expect = 0.37
Identities = 21/149 (14%), Positives = 63/149 (42%), Gaps = 6/149 (4%)
Query: 38 KKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEK 97
K++ +++ K + K + ++ + EE ++ + + E++ ++ +E +
Sbjct: 613 KEQLSRRPVAKVMALGDLSKGDVAEAEHTGERTGEEGERPTEAEGENGEESGGEAEQEGE 672
Query: 98 KKEAEEEKKK--TKNKEKNKNKSRKEEEEK----KKEAEEKKKKRTKKKEKNKNKSRKEE 151
+ E + + + K + + E E K K E E ++ + + E + E
Sbjct: 673 TETKGENESEGEIPAERKGEQEGEGEIEAKEADHKGETEAEEVEHEGETEAEGTEDEGEI 732
Query: 152 EEEEKKKKKKKKKKKRTKKKEEEKRKNEK 180
E E+ ++ + + + + K E + + ++
Sbjct: 733 ETGEEGEEVEDEGEGEAEGKHEVETEGDR 761
Score = 30.3 bits (68), Expect = 2.1
Identities = 28/192 (14%), Positives = 81/192 (42%), Gaps = 18/192 (9%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKN------KSRKEEEEEKRTKKKEKNKKNKNKSRK---- 51
++ + +++ T+ K +N++ + + E+E E + KE + K + ++ +
Sbjct: 659 NGEESGGEAEQEGETETKGENESEGEIPAERKGEQEGEGEIEAKEADHKGETEAEEVEHE 718
Query: 52 --------EEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEE 103
E+E + T ++ + + E + K + T+ K + E + + +E
Sbjct: 719 GETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGKHEVETEGDRKETEHEGETEAEGKEDE 778
Query: 104 EKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKK 163
++ + + E + K + E K + E + + E + E +++ +++
Sbjct: 779 DEGEIQAGEDGEMKGDEGAEGKVEHEGETEAGEKDEHEGQSETQADDTEVKDETGEQELN 838
Query: 164 KKKRTKKKEEEK 175
+ + + K++EK
Sbjct: 839 AENQGEAKQDEK 850
>gnl|CDD|227594 COG5269, ZUO1, Ribosome-associated chaperone zuotin [Translation,
ribosomal structure and biogenesis / Posttranslational
modification, protein turnover, chaperones].
Length = 379
Score = 40.8 bits (95), Expect = 0.001
Identities = 32/110 (29%), Positives = 49/110 (44%), Gaps = 2/110 (1%)
Query: 37 KKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEE 96
K +EK K KN+ ++ + KK + K+ KE++K+ KK R ++E
Sbjct: 202 KNREKRAKLKNQDNARLKRLVQIAKKRDPRIKSFKEQEKEMKKIRKWEREAGARLKALAA 261
Query: 97 KKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNK 146
K +AE + K E S ++K KE +K K KK KN K
Sbjct: 262 LKGKAEAKNKAEI--EAEALASATAVKKKAKEVMKKALKMEKKAIKNAAK 309
Score = 39.2 bits (91), Expect = 0.002
Identities = 30/120 (25%), Positives = 51/120 (42%), Gaps = 5/120 (4%)
Query: 64 KNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEE 123
+ +++ R E K ++KR K + N R + K+ + K K +EK K RK E
Sbjct: 191 EERDRKRYSEAKNREKRAKLKNQDNARLKRLVQIAKKRDPRIKSFKEQEKEMKKIRKWER 250
Query: 124 EKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKAVR 183
E + + K + KN K E E E KKK + ++ + +KA++
Sbjct: 251 EAGARLKALAALKGKAEAKN-----KAEIEAEALASATAVKKKAKEVMKKALKMEKKAIK 305
Score = 35.0 bits (80), Expect = 0.063
Identities = 31/131 (23%), Positives = 56/131 (42%), Gaps = 13/131 (9%)
Query: 44 KNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEE 103
+ +++ R E K + + K KN++ R K+ + KK + KS KE++K+ +
Sbjct: 191 EERDRKRYSEAKNREKRAKLKNQDNAR-----LKRLVQIAKKRDPRIKSFKEQEKEMKKI 245
Query: 104 EK--KKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKK 161
K ++ + K + + E K K E + + K K K E KK K
Sbjct: 246 RKWEREAGARLKALAALKGKAEAKNKAEIEAEALASATAVKKKAK------EVMKKALKM 299
Query: 162 KKKKKRTKKKE 172
+KK + K+
Sbjct: 300 EKKAIKNAAKD 310
Score = 34.6 bits (79), Expect = 0.095
Identities = 31/131 (23%), Positives = 56/131 (42%), Gaps = 13/131 (9%)
Query: 46 KNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEK 105
+ + RK + K +K+ K KN+ + + K+ + KK + KS KE++K+ + K
Sbjct: 191 EERDRKRYSEAKNREKRAKLKNQ---DNARLKRLVQIAKKRDPRIKSFKEQEKEMKKIRK 247
Query: 106 --KKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKK 163
++ + K + + E K K E + + K K K E KK K
Sbjct: 248 WEREAGARLKALAALKGKAEAKNKAEIEAEALASATAVKKKAK--------EVMKKALKM 299
Query: 164 KKKRTKKKEEE 174
+KK K ++
Sbjct: 300 EKKAIKNAAKD 310
Score = 33.9 bits (77), Expect = 0.14
Identities = 25/118 (21%), Positives = 48/118 (40%), Gaps = 4/118 (3%)
Query: 3 NKKEEKKKKKKRRTKKKEKNKNKSRKEEE----EEKRTKKKEKNKKNKNKSRKEEEKKKR 58
K+ + K +++R K K ++ + ++ + + R K ++ +K K RK E +
Sbjct: 195 RKRYSEAKNREKRAKLKNQDNARLKRLVQIAKKRDPRIKSFKEQEKEMKKIRKWEREAGA 254
Query: 59 TKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKN 116
K + + K + + K KE KK + EKK KN K+ +
Sbjct: 255 RLKALAALKGKAEAKNKAEIEAEALASATAVKKKAKEVMKKALKMEKKAIKNAAKDAD 312
>gnl|CDD|217502 pfam03343, SART-1, SART-1 family. SART-1 is a protein involved in
cell cycle arrest and pre-mRNA splicing. It has been
shown to be a component of U4/U6 x U5 tri-snRNP complex
in human, Schizosaccharomyces pombe and Saccharomyces
cerevisiae. SART-1 is a known tumour antigen in a range
of cancers recognised by T cells.
Length = 603
Score = 40.9 bits (96), Expect = 0.001
Identities = 28/166 (16%), Positives = 69/166 (41%), Gaps = 1/166 (0%)
Query: 31 EEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKN 90
E+EK K E KK + +++K + K ++ + +KKK T + +
Sbjct: 175 EKEKDKKNLELKKKKPDYDPDDDDKFNKRSILSK-YDEEIEGKKKKSDNLFTLDSGGSTD 233
Query: 91 KSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKE 150
++++++ ++ K + + + ++ + E + KK + KKK+K K + +
Sbjct: 234 DEAEKKRQEVKKKLKINNVSLDDDSTETPASDYYDVSEMVKFKKPKKKKKKKKKRRKDLD 293
Query: 151 EEEEEKKKKKKKKKKKRTKKKEEEKRKNEKAVRLTKLSAFGISGYL 196
E+E E + + ++K EE+ + + ++
Sbjct: 294 EDELEPEAEGLGSSDSGSRKDVEEENARLEDSPKKRKEEQEDDDFV 339
Score = 40.5 bits (95), Expect = 0.001
Identities = 32/119 (26%), Positives = 55/119 (46%)
Query: 62 KEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKE 121
EK K+K E KKKK +K +S + +E E +KKK+ N + +
Sbjct: 174 VEKEKDKKNLELKKKKPDYDPDDDDKFNKRSILSKYDEEIEGKKKKSDNLFTLDSGGSTD 233
Query: 122 EEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEK 180
+E +KK E KKK + + + + + + K KK + KKK+++KR+ +
Sbjct: 234 DEAEKKRQEVKKKLKINNVSLDDDSTETPASDYYDVSEMVKFKKPKKKKKKKKKRRKDL 292
Score = 39.7 bits (93), Expect = 0.003
Identities = 46/189 (24%), Positives = 80/189 (42%), Gaps = 17/189 (8%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKS----RKEEEEEKRTKKKEKNKKNKNKSRKEEEKKK 57
K E KKKK +K +S EE E K+ K + S +E +KK
Sbjct: 180 KKNLELKKKKPDYDPDDDDKFNKRSILSKYDEEIEGKKKKSDNLFTLDSGGSTDDEAEKK 239
Query: 58 RTKKKEKNKNKNRKEEKKKKK------------KRRTKKKEKNKNKSRKEEKKKEAEEEK 105
R + K+K K N + + + K K+K K K ++ + E E E
Sbjct: 240 RQEVKKKLKINNVSLDDDSTETPASDYYDVSEMVKFKKPKKKKKKKKKRRKDLDEDELEP 299
Query: 106 KKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKK 165
+ + + SRK+ EE+ E+ KKR +++E + ++ + K+++ +K
Sbjct: 300 EAEGLG-SSDSGSRKDVEEENARLEDSPKKRKEEQEDDDFVEDDDDLQASLAKQRRLAQK 358
Query: 166 KRTKKKEEE 174
KR K + E+
Sbjct: 359 KRKKLRPED 367
Score = 37.8 bits (88), Expect = 0.011
Identities = 49/253 (19%), Positives = 96/253 (37%), Gaps = 63/253 (24%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEE--------KRTKKKEKNKKNKNKSRKEE 53
+ +E+ K +++R + + K+ E++++ K++KK++K K+ + K
Sbjct: 56 EELREKIAKAREKRERNSKLGGIKTLGEDDDDDDDTKAWLKKSKKRQKKKEAERKKALLL 115
Query: 54 EKKKRTKKKE-------------------------------------------------- 63
++K++ + E
Sbjct: 116 DEKEKERAAEYTSEDLAGLKVGHKVEEFEEGEDVILTLKDTGVLEDEDEGDELENVELVE 175
Query: 64 KNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEE 123
K K+K E KKKK +K +S + +E E +KKK+ N + ++E
Sbjct: 176 KEKDKKNLELKKKKPDYDPDDDDKFNKRSILSKYDEEIEGKKKKSDNLFTLDSGGSTDDE 235
Query: 124 EKKKEAEEKKKKRTKKKEKNKNKSRKE-----EEEEEKKKKKKKKKKKRTKKKEEEKRKN 178
+KK E KKK + + + + + E K KK KKKKK+ KK+ ++ ++
Sbjct: 236 AEKKRQEVKKKLKINNVSLDDDSTETPASDYYDVSEMVKFKKPKKKKKKKKKRRKDLDED 295
Query: 179 EKAVRLTKLSAFG 191
E L +
Sbjct: 296 ELEPEAEGLGSSD 308
Score = 37.4 bits (87), Expect = 0.014
Identities = 30/167 (17%), Positives = 75/167 (44%), Gaps = 14/167 (8%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKK 61
K+ KKKKKK++ ++K+ ++++ E E + + + +R E+ KKR ++
Sbjct: 273 VKFKKPKKKKKKKKKRRKDLDEDELEPEAEGLGSSDSGSRKDVEEENARLEDSPKKRKEE 332
Query: 62 KEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKS--- 118
+E + ++ + ++ + +K + K R E+ ++ EE+ + + + N +
Sbjct: 333 QEDDDFVEDDDDLQASLAKQRRLAQKKRKKLRPEDIARQIAEERSEDEEEAAENNDNGIV 392
Query: 119 -----------RKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEE 154
+KE E+K E +++ + E++ E+ +
Sbjct: 393 IDETSEFVRSLQKEPLEEKPENKDESVEEISDAEEDDEDEEDEDGDG 439
Score = 33.6 bits (77), Expect = 0.18
Identities = 24/113 (21%), Positives = 49/113 (43%), Gaps = 9/113 (7%)
Query: 25 KSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKK 84
++ +E R +N K + + E K+KR + +EK K ++K+ R K
Sbjct: 24 GAKPGSTKESRDAAAYENWKKRQ--EEAEAKRKREELREKIA-------KAREKRERNSK 74
Query: 85 KEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRT 137
K ++ + + KK+K ++K K RK+ ++ +E+ + T
Sbjct: 75 LGGIKTLGEDDDDDDDTKAWLKKSKKRQKKKEAERKKALLLDEKEKERAAEYT 127
Score = 31.7 bits (72), Expect = 0.87
Identities = 24/104 (23%), Positives = 47/104 (45%), Gaps = 13/104 (12%)
Query: 91 KSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEK------KKKRTKKKEKNK 144
K K ++ + +N K ++E E K+K E + ++KR + +
Sbjct: 18 KPLPVPGAKPGSTKESRDAAAYENWKKRQEEAEAKRKREELREKIAKAREKRERNSKLGG 77
Query: 145 NKSRKEEEEEE-------KKKKKKKKKKKRTKKKEEEKRKNEKA 181
K+ E+++++ KK KK++KKK+ +KK + EK
Sbjct: 78 IKTLGEDDDDDDDTKAWLKKSKKRQKKKEAERKKALLLDEKEKE 121
Score = 29.7 bits (67), Expect = 3.5
Identities = 23/99 (23%), Positives = 43/99 (43%), Gaps = 2/99 (2%)
Query: 16 TKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKK 75
+ ++ ++ K+ +EE K+K + + K + EK++R K K ++
Sbjct: 31 KESRDAAAYENWKKRQEEAEAKRKREELREKIAKAR--EKRERNSKLGGIKTLGEDDDDD 88
Query: 76 KKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKN 114
K KK +K + K E KK +EK+K + E
Sbjct: 89 DDTKAWLKKSKKRQKKKEAERKKALLLDEKEKERAAEYT 127
>gnl|CDD|215214 PLN02381, PLN02381, valyl-tRNA synthetase.
Length = 1066
Score = 41.0 bits (96), Expect = 0.001
Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Query: 100 EAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKK 159
E+E EKK +E + +K++EEK KE E KK K +K+ K K ++++ + KK
Sbjct: 5 ESEAEKKILTEEELER---KKKKEEKAKEKELKKLKAAQKEAKAKLQAQQASDGTNVPKK 61
Query: 160 KKKKKKKRTKKKEEEK 175
+KK +KR + E +
Sbjct: 62 SEKKSRKRDVEDENPE 77
Score = 40.7 bits (95), Expect = 0.001
Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 12/86 (13%)
Query: 70 RKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEA 129
+ E + +KK T+++ + K K KEEK KE E +K K KE + K +A
Sbjct: 2 SRTESEAEKKILTEEELERKKK--KEEKAKEKELKKLKAAQKEA----------KAKLQA 49
Query: 130 EEKKKKRTKKKEKNKNKSRKEEEEEE 155
++ K+ K +++ E+E
Sbjct: 50 QQASDGTNVPKKSEKKSRKRDVEDEN 75
Score = 39.5 bits (92), Expect = 0.004
Identities = 24/94 (25%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 29 EEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKN 88
EEE E++ KK+EK K+ + K K +K+ + K + + + KK +KK R K+ ++
Sbjct: 15 EEELERKKKKEEKAKEKELKKLKAAQKEAKAKLQAQQASDGTNVPKKSEKKSR-KRDVED 73
Query: 89 KNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEE 122
+N + ++K+ + K + S E+
Sbjct: 74 ENPEDFIDPDTPFGQKKRLSSQMAKQYSPSAVEK 107
Score = 39.1 bits (91), Expect = 0.004
Identities = 17/66 (25%), Positives = 33/66 (50%)
Query: 117 KSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKR 176
+++ ++E E KKKK K KEK K + ++E + K + ++ K+ EK+
Sbjct: 6 SEAEKKILTEEELERKKKKEEKAKEKELKKLKAAQKEAKAKLQAQQASDGTNVPKKSEKK 65
Query: 177 KNEKAV 182
++ V
Sbjct: 66 SRKRDV 71
Score = 38.7 bits (90), Expect = 0.006
Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 9/96 (9%)
Query: 20 EKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKK 79
E K EEE +R KKKE+ K++++E KK + +KE K + + ++
Sbjct: 5 ESEAEKKILTEEELERKKKKEE------KAKEKELKKLKAAQKEA---KAKLQAQQASDG 55
Query: 80 RRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNK 115
KK + K++ R E + + T +K +
Sbjct: 56 TNVPKKSEKKSRKRDVEDENPEDFIDPDTPFGQKKR 91
Score = 38.3 bits (89), Expect = 0.007
Identities = 28/109 (25%), Positives = 53/109 (48%), Gaps = 9/109 (8%)
Query: 49 SRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKT 108
SR E E +K+ +E+ + K +KEEK K+K+ KK K K K + + + +
Sbjct: 2 SRTESEAEKKILTEEELERKKKKEEKAKEKE---LKKLKAAQKEAKAKLQAQQASDGTNV 58
Query: 109 KNKEKNKNKSRKEEEEKKKEAEE------KKKKRTKKKEKNKNKSRKEE 151
K + K++ R E+E ++ + +KK+ + + K + S E+
Sbjct: 59 PKKSEKKSRKRDVEDENPEDFIDPDTPFGQKKRLSSQMAKQYSPSAVEK 107
Score = 37.6 bits (87), Expect = 0.011
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
Query: 4 KKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKE 63
KK +++ +R+ KK+EK K E+E K+ K +K K K ++++ + KK E
Sbjct: 10 KKILTEEELERKKKKEEKAK------EKELKKLKAAQKEAKAKLQAQQASDGTNVPKKSE 63
Query: 64 KNKNKNRKEEK 74
K K E++
Sbjct: 64 KKSRKRDVEDE 74
Score = 36.8 bits (85), Expect = 0.022
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 26 SRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKK 85
+ E E++ T+++ + KK K + KE+E KK K +K + ++ KK
Sbjct: 4 TESEAEKKILTEEELERKKKKEEKAKEKELKK-LKAAQKEAKAKLQAQQASDGTNVPKKS 62
Query: 86 EKNKNKSRKEEKKKEAEEE 104
EK KSRK + + E E+
Sbjct: 63 EK---KSRKRDVEDENPED 78
Score = 36.4 bits (84), Expect = 0.029
Identities = 17/73 (23%), Positives = 40/73 (54%)
Query: 14 RRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEE 73
RT+ + + K + +E E +K+ ++K K K+ K ++E K + + ++ + N ++
Sbjct: 2 SRTESEAEKKILTEEELERKKKKEEKAKEKELKKLKAAQKEAKAKLQAQQASDGTNVPKK 61
Query: 74 KKKKKKRRTKKKE 86
+KK ++R + E
Sbjct: 62 SEKKSRKRDVEDE 74
Score = 36.4 bits (84), Expect = 0.033
Identities = 23/92 (25%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 6 EEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKN 65
EE ++KKK+ K KEK K + ++E K + ++ N +K E+K ++ +++N
Sbjct: 16 EELERKKKKEEKAKEKELKKLKAAQKEAKAKLQAQQASDGTNVPKKSEKKSRKRDVEDEN 75
Query: 66 KNKNRKEEKKK-KKKRRTKKKEKNKNKSRKEE 96
+ +KKR + + K + S E+
Sbjct: 76 PEDFIDPDTPFGQKKRLSSQMAKQYSPSAVEK 107
Score = 31.8 bits (72), Expect = 0.73
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEE 54
K KKEEK K+K+ + K K K K + ++ K K +++ E
Sbjct: 21 KKKKEEKAKEKELK-KLKAAQKEAKAKLQAQQASDGTNVPKKSEKKSRKRDVE 72
Score = 30.6 bits (69), Expect = 2.0
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 148 RKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKAVRLTKLSA 189
+K EEE ++KKKK++K K+KE +K K + KL A
Sbjct: 10 KKILTEEELERKKKKEEK--AKEKELKKLKAAQKEAKAKLQA 49
Score = 30.3 bits (68), Expect = 2.2
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 141 EKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKA 181
E K EEE E+KKKK++K K++ KK + +K KA
Sbjct: 5 ESEAEKKILTEEELERKKKKEEKAKEKELKKLKAAQKEAKA 45
Score = 28.3 bits (63), Expect = 8.5
Identities = 13/53 (24%), Positives = 27/53 (50%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEE 54
K K+E+ K+K+ ++ K +K + ++ T +K++K K E+E
Sbjct: 22 KKKEEKAKEKELKKLKAAQKEAKAKLQAQQASDGTNVPKKSEKKSRKRDVEDE 74
>gnl|CDD|184287 PRK13735, PRK13735, conjugal transfer mating pair stabilization
protein TraG; Provisional.
Length = 942
Score = 40.9 bits (96), Expect = 0.001
Identities = 18/82 (21%), Positives = 31/82 (37%)
Query: 28 KEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEK 87
K + + T+ + +N R EE K + +N +K + K +E+
Sbjct: 860 KHQVDNMVTEYEGNIGDTQNSIRGEENTVKGQYSELQNHHKTEALSQNNKYNEEKSAQER 919
Query: 88 NKNKSRKEEKKKEAEEEKKKTK 109
EE K A+E + K K
Sbjct: 920 MPGADSPEELMKRAKEYQDKHK 941
Score = 38.6 bits (90), Expect = 0.005
Identities = 17/87 (19%), Positives = 35/87 (40%), Gaps = 3/87 (3%)
Query: 87 KNKNKSRKEEKKKEAEEEKKKTKN---KEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKN 143
+N K + + E E T+N E+N K + E + + E + +EK+
Sbjct: 856 RNDVKHQVDNMVTEYEGNIGDTQNSIRGEENTVKGQYSELQNHHKTEALSQNNKYNEEKS 915
Query: 144 KNKSRKEEEEEEKKKKKKKKKKKRTKK 170
+ + E+ K+ K+ + + K
Sbjct: 916 AQERMPGADSPEELMKRAKEYQDKHKG 942
Score = 37.4 bits (87), Expect = 0.013
Identities = 9/86 (10%), Positives = 33/86 (38%)
Query: 51 KEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKN 110
+ + K + + + + + + T K + ++ ++ + + + + K+
Sbjct: 856 RNDVKHQVDNMVTEYEGNIGDTQNSIRGEENTVKGQYSELQNHHKTEALSQNNKYNEEKS 915
Query: 111 KEKNKNKSRKEEEEKKKEAEEKKKKR 136
++ + EE K+ E + K +
Sbjct: 916 AQERMPGADSPEELMKRAKEYQDKHK 941
Score = 37.0 bits (86), Expect = 0.021
Identities = 18/103 (17%), Positives = 39/103 (37%), Gaps = 7/103 (6%)
Query: 33 EKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKS 92
E+RT+ + +N K + + + +N R EE K + +
Sbjct: 847 EQRTQ--DSGIRNDVKHQVDNMVTEYEGNIGDTQNSIRGEENTVKGQYSELQNHHKTEAL 904
Query: 93 RKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKK 135
+ K E + +++ + S +E ++ KE ++K K
Sbjct: 905 SQNNKYNEEKSAQERMPGAD-----SPEELMKRAKEYQDKHKG 942
Score = 34.0 bits (78), Expect = 0.17
Identities = 11/105 (10%), Positives = 43/105 (40%), Gaps = 9/105 (8%)
Query: 62 KEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKE 121
+++ ++ + + K + + E N ++ + +E + + ++ + +K ++ +
Sbjct: 847 EQRTQDSGIRNDVKHQVDNMVTEYEGNIGDTQNSIRGEENTVKGQYSELQNHHKTEALSQ 906
Query: 122 EEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKK 166
+ +E +++ + EE ++ K+ + K K
Sbjct: 907 NNKYNEEKSAQER---------MPGADSPEELMKRAKEYQDKHKG 942
Score = 30.9 bits (70), Expect = 1.4
Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 7/66 (10%)
Query: 21 KNKNKSRKEEEEEK------RTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKN-KNRKEE 73
+N R EE K + K + NK +E+ ++R + + R +E
Sbjct: 876 DTQNSIRGEENTVKGQYSELQNHHKTEALSQNNKYNEEKSAQERMPGADSPEELMKRAKE 935
Query: 74 KKKKKK 79
+ K K
Sbjct: 936 YQDKHK 941
>gnl|CDD|227509 COG5182, CUS1, Splicing factor 3b, subunit 2 [RNA processing and
modification].
Length = 429
Score = 40.4 bits (94), Expect = 0.001
Identities = 25/129 (19%), Positives = 52/129 (40%), Gaps = 1/129 (0%)
Query: 5 KEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNK-NKSRKEEEKKKRTKKKE 63
+ K K + +R+ E+++K K K NK ++ E+E K ++ +
Sbjct: 12 NNQNKNASVVNNKAEIAAMIDARRLEQKKKGGVTNSKGKTNKVVDAKLEKEFKDVLQRFQ 71
Query: 64 KNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEE 123
+N KE K +K K K + E E E + +E++ ++ +K +
Sbjct: 72 VQENDTPKEITKDEKNMSRMKSRKAPTIHMEAEIDDEYGFEDRMKPYREESLSRQKKRKA 131
Query: 124 EKKKEAEEK 132
+ + + K
Sbjct: 132 LQHRYEQLK 140
Score = 38.4 bits (89), Expect = 0.005
Identities = 27/128 (21%), Positives = 51/128 (39%), Gaps = 6/128 (4%)
Query: 21 KNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNK-NKNRKEEKKKKKK 79
K++ +S + + + +R+ E+KKK K K NK + +K+ K
Sbjct: 5 KSRKRSGNNQNKNASVVNNKAEIAAMIDARRLEQKKKGGVTNSKGKTNKVVDAKLEKEFK 64
Query: 80 RRTKKKEKNKNKSRKEEKKKE-----AEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKK 134
++ + +N + KE K E + K T + E + E+ K EE
Sbjct: 65 DVLQRFQVQENDTPKEITKDEKNMSRMKSRKAPTIHMEAEIDDEYGFEDRMKPYREESLS 124
Query: 135 KRTKKKEK 142
++ K+K
Sbjct: 125 RQKKRKAL 132
Score = 31.9 bits (72), Expect = 0.58
Identities = 24/129 (18%), Positives = 49/129 (37%), Gaps = 12/129 (9%)
Query: 64 KNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKE-- 121
K++ ++ + K K + +R+ E+KK+ K K + K KE
Sbjct: 5 KSRKRSGNNQNKNASVVNNKAEIAAMIDARRLEQKKKGGVTNSKGKTNKVVDAKLEKEFK 64
Query: 122 ---------EEEKKKEAEEKKKKRTK-KKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKK 171
E + KE + +K ++ K K + E ++E + + K +
Sbjct: 65 DVLQRFQVQENDTPKEITKDEKNMSRMKSRKAPTIHMEAEIDDEYGFEDRMKPYREESLS 124
Query: 172 EEEKRKNEK 180
++KRK +
Sbjct: 125 RQKKRKALQ 133
Score = 28.4 bits (63), Expect = 8.5
Identities = 27/141 (19%), Positives = 55/141 (39%), Gaps = 13/141 (9%)
Query: 33 EKRTKKKEKNKKNKNKSR--KEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKN 90
+++K+ N +NKN S + E R+ E+KKK K + NK
Sbjct: 3 RTKSRKRSGNNQNKNASVVNNKAEIAAM--------IDARRLEQKKKGGVTNSKGKTNKV 54
Query: 91 KSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEE---KKKKRTKKKEKNKNKS 147
K EK+ + ++ + + + K ++ E+ + ++ + + E
Sbjct: 55 VDAKLEKEFKDVLQRFQVQENDTPKEITKDEKNMSRMKSRKAPTIHMEAEIDDEYGFEDR 114
Query: 148 RKEEEEEEKKKKKKKKKKKRT 168
K EE ++KK+K +
Sbjct: 115 MKPYREESLSRQKKRKALQHR 135
>gnl|CDD|219746 pfam08208, RNA_polI_A34, DNA-directed RNA polymerase I subunit
RPA34.5. This is a family of proteins conserved from
yeasts to human. Subunit A34.5 of RNA polymerase I is a
non-essential subunit which is thought to help Pol I
overcome topological constraints imposed on ribosomal
DNA during the process of transcription.
Length = 193
Score = 38.9 bits (91), Expect = 0.002
Identities = 26/68 (38%), Positives = 39/68 (57%)
Query: 94 KEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEE 153
E + EK+ T EK +E++EKKK+ E KK+K+ KK +K K K ++
Sbjct: 126 SELGSESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSKK 185
Query: 154 EEKKKKKK 161
++KKKKKK
Sbjct: 186 KKKKKKKK 193
Score = 38.5 bits (90), Expect = 0.003
Identities = 24/67 (35%), Positives = 37/67 (55%)
Query: 28 KEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEK 87
+ E + ++K+ K K +EEEKK++ KKKE K K K++KK+K K+K
Sbjct: 127 ELGSESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSKKK 186
Query: 88 NKNKSRK 94
K K +K
Sbjct: 187 KKKKKKK 193
Score = 37.8 bits (88), Expect = 0.005
Identities = 25/70 (35%), Positives = 44/70 (62%)
Query: 102 EEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKK 161
+ ++++ K + K E+E + E EEKK+K+ KK+ K + K +K+++E+ + K
Sbjct: 124 PPSELGSESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGS 183
Query: 162 KKKKKRTKKK 171
KKKKK+ KKK
Sbjct: 184 KKKKKKKKKK 193
Score = 37.0 bits (86), Expect = 0.008
Identities = 23/63 (36%), Positives = 39/63 (61%)
Query: 115 KNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEE 174
E+E K +E + + +KKEK K K K+E++E+K KK+K + K +KKK+++
Sbjct: 130 SESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSKKKKKK 189
Query: 175 KRK 177
K+K
Sbjct: 190 KKK 192
Score = 36.6 bits (85), Expect = 0.011
Identities = 24/65 (36%), Positives = 39/65 (60%)
Query: 49 SRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKT 108
+ E +K T K + + + +EEKK+KKK++ KKEK + K +KE+ + +KKK
Sbjct: 129 GSESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSKKKKK 188
Query: 109 KNKEK 113
K K+K
Sbjct: 189 KKKKK 193
Score = 35.5 bits (82), Expect = 0.022
Identities = 20/63 (31%), Positives = 39/63 (61%)
Query: 118 SRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRK 177
+ E +K+ + +K+ ++E+ K K +K+E ++EKK+KK KK+K K ++K+K
Sbjct: 129 GSESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSKKKKK 188
Query: 178 NEK 180
+K
Sbjct: 189 KKK 191
Score = 35.1 bits (81), Expect = 0.030
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 20 EKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKK-KRTKKKEKNKNKNRKEEKKKKK 78
S KE + + + + ++ K K +K+E KK K+ KK +K K K KKKKK
Sbjct: 129 GSESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSKKKKK 188
Query: 79 KRRTK 83
K++ K
Sbjct: 189 KKKKK 193
Score = 35.1 bits (81), Expect = 0.038
Identities = 21/57 (36%), Positives = 34/57 (59%)
Query: 86 EKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEK 142
EK ++E + E EE+K+K K KE K K K+++++K + KK+ KKK+K
Sbjct: 136 EKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSKKKKKKKKK 192
Score = 34.3 bits (79), Expect = 0.064
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 40 EKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKK 99
+ K + +K+ ++E+ K K +K+E KK+KK KK +K K K KKK
Sbjct: 129 GSESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKE--KKDKKEKMVEPKGSKKK 186
Query: 100 EAEEEKK 106
+ +++KK
Sbjct: 187 KKKKKKK 193
Score = 33.9 bits (78), Expect = 0.079
Identities = 20/63 (31%), Positives = 38/63 (60%)
Query: 84 KKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKN 143
+ + K + +KEAE E+++ K K+K K ++++E+K K+ + + K +KKK+K
Sbjct: 130 SESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSKKKKKK 189
Query: 144 KNK 146
K K
Sbjct: 190 KKK 192
Score = 33.9 bits (78), Expect = 0.083
Identities = 20/65 (30%), Positives = 36/65 (55%)
Query: 63 EKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEE 122
+ KE K +K ++E+ K K +K+E KKE +E+K K + + K +K++
Sbjct: 129 GSESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSKKKKK 188
Query: 123 EEKKK 127
++KKK
Sbjct: 189 KKKKK 193
Score = 33.5 bits (77), Expect = 0.10
Identities = 21/64 (32%), Positives = 41/64 (64%)
Query: 16 TKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKK 75
++ + K + K E+E + ++++K KK K + +KE+++KK K+K ++K++KK
Sbjct: 130 SESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSKKKKKK 189
Query: 76 KKKK 79
KKKK
Sbjct: 190 KKKK 193
Score = 33.2 bits (76), Expect = 0.13
Identities = 22/64 (34%), Positives = 39/64 (60%)
Query: 26 SRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKK 85
S E E++ T K EK + + + +KE++KKK KK++K K +++ + K ++ KKK
Sbjct: 130 SESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSKKKKKK 189
Query: 86 EKNK 89
+K K
Sbjct: 190 KKKK 193
Score = 33.2 bits (76), Expect = 0.17
Identities = 22/64 (34%), Positives = 38/64 (59%)
Query: 72 EEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEE 131
E + +K T K EK +E+K+K+ ++E KK K ++K+K + E + KK+ ++
Sbjct: 130 SESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSKKKKKK 189
Query: 132 KKKK 135
KKKK
Sbjct: 190 KKKK 193
Score = 32.8 bits (75), Expect = 0.18
Identities = 18/61 (29%), Positives = 34/61 (55%)
Query: 4 KKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKE 63
+ EK+ K + + + + K K++++E + +KKEK K + + KKK+ KKK+
Sbjct: 133 ETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSKKKKKKKKK 192
Query: 64 K 64
K
Sbjct: 193 K 193
Score = 32.8 bits (75), Expect = 0.20
Identities = 25/63 (39%), Positives = 40/63 (63%)
Query: 82 TKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKE 141
++ + K + K EK+ E EEE+KK K K+K K +KE+++KK++ E K + KKK+
Sbjct: 130 SESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSKKKKKK 189
Query: 142 KNK 144
K K
Sbjct: 190 KKK 192
Score = 32.0 bits (73), Expect = 0.37
Identities = 18/50 (36%), Positives = 31/50 (62%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRK 51
+ + E ++++KK + KKKE K K K++++EK + K KK K K +K
Sbjct: 144 EKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSKKKKKKKKKK 193
Score = 31.6 bits (72), Expect = 0.46
Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
Query: 120 KEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNE 179
E E+E +K+ T K EK +EEE++EKKKKK+ KK+K+ KK ++EK
Sbjct: 123 GPPSELGSESETSEKETTAKVEKEAEV--EEEEKKEKKKKKEVKKEKKEKKDKKEKMVEP 180
Query: 180 KAVRLTK 186
K + K
Sbjct: 181 KGSKKKK 187
Score = 31.2 bits (71), Expect = 0.64
Identities = 19/63 (30%), Positives = 40/63 (63%)
Query: 4 KKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKE 63
+ E +K+ + +K+ + + + +KE++++K KK++K KK+K + E + K+ KKK+
Sbjct: 131 ESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSKKKKKKK 190
Query: 64 KNK 66
K K
Sbjct: 191 KKK 193
Score = 30.5 bits (69), Expect = 1.2
Identities = 19/71 (26%), Positives = 38/71 (53%)
Query: 4 KKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKE 63
+ + ++K+ K + E EEE++ +KK+K + K K K+++K+K + K
Sbjct: 123 GPPSELGSESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKG 182
Query: 64 KNKNKNRKEEK 74
K K +K++K
Sbjct: 183 SKKKKKKKKKK 193
Score = 30.5 bits (69), Expect = 1.2
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 52 EEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNK 111
E + + K + + EE++KK+K+ KKKE K K K++KK++ E K K K
Sbjct: 130 SESETSEKETTAKVEKEAEVEEEEKKEKK--KKKEVKKEKKEKKDKKEKMVEPKGSKKKK 187
Query: 112 EKNKNK 117
+K K K
Sbjct: 188 KKKKKK 193
>gnl|CDD|233503 TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, large subunit,
splicing factor. These splicing factors consist of an
N-terminal arginine-rich low complexity domain followed
by three tandem RNA recognition motifs (pfam00076). The
well-characterized members of this family are auxilliary
components of the U2 small nuclear ribonuclearprotein
splicing factor (U2AF). These proteins are closely
related to the CC1-like subfamily of splicing factors
(TIGR01622). Members of this subfamily are found in
plants, metazoa and fungi.
Length = 509
Score = 40.3 bits (94), Expect = 0.002
Identities = 13/135 (9%), Positives = 59/135 (43%), Gaps = 19/135 (14%)
Query: 5 KEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEK 64
+E ++++K R + ++++ + R+ + R + R +++ ++ +
Sbjct: 3 EEPDREREKSRGRDRDRSSERPRRRSRDRSR-----------FRDRHRRSRERSYREDSR 51
Query: 65 NKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEE 124
+++ R + + + R + + +++++ R+ + + E + + + + R +
Sbjct: 52 PRDRRRYDSRSPRSLRYSSVR-RSRDRPRRRSRSVRSIE-------QHRRRLRDRSPSNQ 103
Query: 125 KKKEAEEKKKKRTKK 139
+K+ +++ K
Sbjct: 104 WRKDDKKRSLWDIKP 118
Score = 38.7 bits (90), Expect = 0.005
Identities = 10/110 (9%), Positives = 54/110 (49%), Gaps = 1/110 (0%)
Query: 38 KKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEK 97
++ ++ K++ R + +R +++ +++++ R + ++ ++R ++ + +++ R + +
Sbjct: 3 EEPDREREKSRGRDRDRSSERPRRRSRDRSRFR-DRHRRSRERSYREDSRPRDRRRYDSR 61
Query: 98 KKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKS 147
+ +++++ + +SR ++ + + + + K+ K
Sbjct: 62 SPRSLRYSSVRRSRDRPRRRSRSVRSIEQHRRRLRDRSPSNQWRKDDKKR 111
Score = 38.0 bits (88), Expect = 0.007
Identities = 15/131 (11%), Positives = 53/131 (40%), Gaps = 10/131 (7%)
Query: 44 KNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNK-SRKEEKKKEAE 102
+++ R+ E+ + R + + + + R ++ + + R + +E++ + SR ++++
Sbjct: 1 RDEEPDREREKSRGRDRDRSSERPRRRSRDRSRFRDRHRRSRERSYREDSRPRDRRRYDS 60
Query: 103 EEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKK 162
+ + +++ R + + E+ ++R + + + +K KK+
Sbjct: 61 RSPRSLRYSSVRRSRDRPRRRSRSVRSIEQHRRRLRDRSPSNQ---------WRKDDKKR 111
Query: 163 KKKKRTKKKEE 173
E
Sbjct: 112 SLWDIKPPGYE 122
Score = 30.2 bits (68), Expect = 2.0
Identities = 10/98 (10%), Positives = 45/98 (45%), Gaps = 6/98 (6%)
Query: 87 KNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNK 146
+++ R+ EK + + ++ + + +++++SR + + +++ ++ + +++
Sbjct: 1 RDEEPDREREKSRGRDRDRSSERPRRRSRDRSRFRDRHR-----RSRERSYREDSRPRDR 55
Query: 147 SRKEEEE-EEKKKKKKKKKKKRTKKKEEEKRKNEKAVR 183
R + + ++ + R +++ R E+ R
Sbjct: 56 RRYDSRSPRSLRYSSVRRSRDRPRRRSRSVRSIEQHRR 93
Score = 28.3 bits (63), Expect = 9.0
Identities = 8/87 (9%), Positives = 37/87 (42%), Gaps = 3/87 (3%)
Query: 5 KEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEK 64
++ ++ ++R ++ + +++ R + R+ + ++++++ R+ + ++ +
Sbjct: 35 RDRHRRSRERSYREDSRPRDRRR-YDSRSPRSLRYSSVRRSRDRPRRRSRSVRSIEQHRR 93
Query: 65 N--KNKNRKEEKKKKKKRRTKKKEKNK 89
+ +K KKR +
Sbjct: 94 RLRDRSPSNQWRKDDKKRSLWDIKPPG 120
>gnl|CDD|222581 pfam14181, YqfQ, YqfQ-like protein. The YqfQ-like protein family
includes the B. subtilis YqfQ protein, also known as
VrrA, which is functionally uncharacterized. This family
of proteins is found in bacteria. Proteins in this
family are typically between 146 and 237 amino acids in
length. There are two conserved sequence motifs: QYGP
and PKLY.
Length = 155
Score = 38.6 bits (90), Expect = 0.002
Identities = 15/63 (23%), Positives = 31/63 (49%)
Query: 104 EKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKK 163
E + ++E+ + +E E++ E K + + KKK + ++E+ + + KK K
Sbjct: 90 ELSSSDDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKPKPS 149
Query: 164 KKK 166
K K
Sbjct: 150 KPK 152
Score = 37.4 bits (87), Expect = 0.004
Identities = 16/45 (35%), Positives = 28/45 (62%)
Query: 20 EKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEK 64
E++ +++ +E+ E +T+ KEK K+ K + E+EK K KK K
Sbjct: 103 EESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKPK 147
Score = 36.3 bits (84), Expect = 0.010
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 24 NKSRKEEEEEKRTKKKEKNKKNK--NKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKK 79
S +EEEE + ++ ++ + +EKKKR K K + + K E KK K
Sbjct: 91 LSSSDDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKPKP 148
Score = 35.1 bits (81), Expect = 0.022
Identities = 18/61 (29%), Positives = 32/61 (52%)
Query: 110 NKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTK 169
+ ++ + +EE + E E+ + +T+ KEK K + K + E+EK K + KK K
Sbjct: 92 SSSDDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKPKPSKP 151
Query: 170 K 170
K
Sbjct: 152 K 152
Score = 33.6 bits (77), Expect = 0.089
Identities = 17/59 (28%), Positives = 30/59 (50%)
Query: 126 KKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKAVRL 184
E EE +++ T + E+ K E +E+KK++ K K ++ K K E K+ +L
Sbjct: 95 DDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKPKPSKPKL 153
Score = 32.4 bits (74), Expect = 0.20
Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 82 TKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKK 134
T+++ ++ + + K +EKKK + + K K + E KK K K
Sbjct: 101 TEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKE-KPKTEPKKPKPSKPK 152
Score = 31.6 bits (72), Expect = 0.31
Identities = 14/58 (24%), Positives = 27/58 (46%)
Query: 89 KNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNK 146
++ + E++ E E++ + + +K E K K +EK K KK + +K K
Sbjct: 95 DDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKPKPSKPK 152
Score = 31.3 bits (71), Expect = 0.46
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 14/76 (18%)
Query: 90 NKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRK 149
S +E+++ EE +T+ ++ + K+ +E+ KK+E K K+ K
Sbjct: 91 LSSSDDEEEETEEESTDETEQEDPPETKTESKEK--------------KKREVPKPKTEK 136
Query: 150 EEEEEEKKKKKKKKKK 165
E+ + E KK K K K
Sbjct: 137 EKPKTEPKKPKPSKPK 152
Score = 30.9 bits (70), Expect = 0.68
Identities = 13/45 (28%), Positives = 24/45 (53%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNK 46
+ ++E+ + K +KK++ K + E+E+ K KK K K K
Sbjct: 108 ETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKPKPSKPK 152
Score = 30.5 bits (69), Expect = 0.78
Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 7/69 (10%)
Query: 47 NKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKK 106
S +EE + +E++ ++ +E+ + K T+ KEK K + K + +KE + +
Sbjct: 91 LSSSDDEE----EETEEESTDETEQEDPPETK---TESKEKKKREVPKPKTEKEKPKTEP 143
Query: 107 KTKNKEKNK 115
K K K
Sbjct: 144 KKPKPSKPK 152
Score = 29.7 bits (67), Expect = 1.5
Identities = 15/60 (25%), Positives = 32/60 (53%)
Query: 62 KEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKE 121
+E + + + +EE +++ T++++ + K+ +EKKK + K K K K + K K
Sbjct: 89 RELSSSDDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKPKP 148
Score = 29.3 bits (66), Expect = 2.2
Identities = 14/55 (25%), Positives = 28/55 (50%)
Query: 86 EKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKK 140
E+ + +E ++E E K ++K + + + E++K + E KK K +K K
Sbjct: 98 EEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKPKPSKPK 152
Score = 29.0 bits (65), Expect = 2.9
Identities = 12/51 (23%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 137 TKKKEKNKNKSRKEEEEEEKKKK-KKKKKKKRTKKKEEEKRKNEKAVRLTK 186
+ ++ + + +E E++ + K + K KK+E K K EK T+
Sbjct: 92 SSSDDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTE 142
Score = 28.6 bits (64), Expect = 4.1
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 17/68 (25%)
Query: 116 NKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTK--KKEE 173
+ S EEEE ++E+ ++ ++ E+ E K + K+KKK+ K E+
Sbjct: 92 SSSDDEEEETEEESTDETEQ---------------EDPPETKTESKEKKKREVPKPKTEK 136
Query: 174 EKRKNEKA 181
EK K E
Sbjct: 137 EKPKTEPK 144
>gnl|CDD|222160 pfam13476, AAA_23, AAA domain.
Length = 204
Score = 38.7 bits (90), Expect = 0.002
Identities = 35/157 (22%), Positives = 70/157 (44%)
Query: 24 NKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTK 83
SR ++ + + K + + +K + K K K + +E ++ KK+ K
Sbjct: 46 KTSRLKKSKGRGIVKGDIEIEKDEGKKKTYVEITFENNKGKLKLRLIEESRELTKKKGKK 105
Query: 84 KKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKN 143
K+ +E ++ +E K K +E E+ K ++KK+R ++ EK
Sbjct: 106 VKKSILEIVEIDELQEFIDELLKSDKEILPLLLYLGQERLEELKFKRKEKKERLEELEKE 165
Query: 144 KNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEK 180
+ E++ EK ++K+KKK+ + KEE + E+
Sbjct: 166 LEELEDEKDLLEKLLEEKEKKKELEELKEELEELLEE 202
Score = 35.6 bits (82), Expect = 0.028
Identities = 33/160 (20%), Positives = 68/160 (42%), Gaps = 5/160 (3%)
Query: 3 NKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKK 62
K KK K R K + K +++ + K K + +E + + K K
Sbjct: 45 GKTSRLKKSKGRGIVKGDIEIEKDEGKKKTYVEITFENNKGKLKLRLIEESRELTKKKGK 104
Query: 63 EKNKNKNRKEEKKKKKKRRTKKKEKNKNKSR-----KEEKKKEAEEEKKKTKNKEKNKNK 117
+ K+ E + ++ + + +K +E+ +E + ++K+ K + + K
Sbjct: 105 KVKKSILEIVEIDELQEFIDELLKSDKEILPLLLYLGQERLEELKFKRKEKKERLEELEK 164
Query: 118 SRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKK 157
+E E++K E+ +++ KKKE + K EE EE +
Sbjct: 165 ELEELEDEKDLLEKLLEEKEKKKELEELKEELEELLEELE 204
>gnl|CDD|214661 smart00435, TOPEUc, DNA Topoisomerase I (eukaryota). DNA
Topoisomerase I (eukaryota), DNA topoisomerase V,
Vaccina virus topoisomerase, Variola virus
topoisomerase, Shope fibroma virus topoisomeras.
Length = 391
Score = 39.6 bits (93), Expect = 0.002
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Query: 3 NKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKK 62
+K + K + +R KK + + K +++ K + K++EKKK KKK
Sbjct: 283 QEKIKALKYQLKRLKKMILLFEMISDLKRKLKSKFERDNEKLDAEVKEKKKEKKKEEKKK 342
Query: 63 EKNKNKNRKEEKKKKKKRRTKKKEKNK 89
K R EE+ +K + + KE+NK
Sbjct: 343 ---KQIERLEERIEKLEVQATDKEENK 366
Score = 38.1 bits (89), Expect = 0.007
Identities = 25/102 (24%), Positives = 51/102 (50%), Gaps = 3/102 (2%)
Query: 57 KRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKN 116
+RT K K+ + +EK K K + ++ K E + + + K ++ K
Sbjct: 268 QRTVSKTHEKSMEKLQEKIKALK---YQLKRLKKMILLFEMISDLKRKLKSKFERDNEKL 324
Query: 117 KSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKK 158
+ +E++K+K+ EEKKKK+ ++ E+ K + ++E+ K
Sbjct: 325 DAEVKEKKKEKKKEEKKKKQIERLEERIEKLEVQATDKEENK 366
Score = 36.9 bits (86), Expect = 0.016
Identities = 21/93 (22%), Positives = 48/93 (51%)
Query: 88 NKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKS 147
+K + EK +E + K + K + + K++ + K ++ +K + +
Sbjct: 272 SKTHEKSMEKLQEKIKALKYQLKRLKKMILLFEMISDLKRKLKSKFERDNEKLDAEVKEK 331
Query: 148 RKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEK 180
+KE+++EEKKKK+ ++ ++R +K E + E+
Sbjct: 332 KKEKKKEEKKKKQIERLEERIEKLEVQATDKEE 364
Score = 36.9 bits (86), Expect = 0.016
Identities = 18/81 (22%), Positives = 39/81 (48%)
Query: 15 RTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEK 74
+ ++K K K ++ + + K K KS+ E + +K + ++ K + +KEEK
Sbjct: 281 KLQEKIKALKYQLKRLKKMILLFEMISDLKRKLKSKFERDNEKLDAEVKEKKKEKKKEEK 340
Query: 75 KKKKKRRTKKKEKNKNKSRKE 95
KKK+ R +++ + +
Sbjct: 341 KKKQIERLEERIEKLEVQATD 361
Score = 35.8 bits (83), Expect = 0.040
Identities = 27/97 (27%), Positives = 45/97 (46%)
Query: 90 NKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRK 149
N R K E EK + K K R ++ E K++ K K + N+
Sbjct: 266 NHQRTVSKTHEKSMEKLQEKIKALKYQLKRLKKMILLFEMISDLKRKLKSKFERDNEKLD 325
Query: 150 EEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKAVRLTK 186
E +E+KK+KKK++KKK+ ++ EE+ + + K
Sbjct: 326 AEVKEKKKEKKKEEKKKKQIERLEERIEKLEVQATDK 362
Score = 33.1 bits (76), Expect = 0.24
Identities = 26/101 (25%), Positives = 51/101 (50%), Gaps = 3/101 (2%)
Query: 15 RTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEK 74
RT K K+ + +E+ + + ++ KK + K++ K K + N+ E
Sbjct: 269 RTVSKTHEKSMEKLQEKIKALKYQLKRLKKMILLFEMISDLKRKLKSKFERDNEKLDAEV 328
Query: 75 KKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNK 115
K+KKK +KK++ K K + E ++ E+ + + +KE+NK
Sbjct: 329 KEKKK---EKKKEEKKKKQIERLEERIEKLEVQATDKEENK 366
Score = 32.3 bits (74), Expect = 0.45
Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Query: 58 RTKKKEKNKNKNRKEEKKK--KKKRRTKKKEKNKNKSRKEEKKKEAE-EEKKKTKNKEKN 114
+ ++K K K KK + + K K K+K ++ +K +AE +EKKK K KE+
Sbjct: 281 KLQEKIKALKYQLKRLKKMILLFEMISDLKRKLKSKFERDNEKLDAEVKEKKKEKKKEEK 340
Query: 115 KNKSRKEEEEKKKEAEEKKKKRTKKKE 141
K K + EE+ ++ E + + + K
Sbjct: 341 KKKQIERLEERIEKLEVQATDKEENKT 367
Score = 31.6 bits (72), Expect = 0.73
Identities = 22/91 (24%), Positives = 44/91 (48%)
Query: 103 EEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKK 162
+EK K + + K E + + K K + ++ + + KE+++E+KK++KKK
Sbjct: 283 QEKIKALKYQLKRLKKMILLFEMISDLKRKLKSKFERDNEKLDAEVKEKKKEKKKEEKKK 342
Query: 163 KKKKRTKKKEEEKRKNEKAVRLTKLSAFGIS 193
K+ +R +++ E+ K A G S
Sbjct: 343 KQIERLEERIEKLEVQATDKEENKTVALGTS 373
Score = 30.4 bits (69), Expect = 1.8
Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Query: 44 KNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEE 103
+ K K+ K + K+ + + K + K K +R + K + +EKKKE ++
Sbjct: 283 QEKIKALKYQLKRLKKMILLFEMISDLKRKLKSKFER-----DNEKLDAEVKEKKKEKKK 337
Query: 104 EKKKTKNKEKNKNKSRKEEEEKKKEAEEK 132
E+KK K E+ + + K E + + E K
Sbjct: 338 EEKKKKQIERLEERIEKLEVQATDKEENK 366
Score = 28.1 bits (63), Expect = 8.8
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKK 61
++K K K E++ K E +E+K+ KKKE+ KK + + +E +K +
Sbjct: 305 MISDLKRKLKSKF-----ERDNEKLDAEVKEKKKEKKKEEKKKKQIERLEERIEKLEVQA 359
Query: 62 KEKNKNK 68
+K +NK
Sbjct: 360 TDKEENK 366
>gnl|CDD|218734 pfam05758, Ycf1, Ycf1. The chloroplast genomes of most higher
plants contain two giant open reading frames designated
ycf1 and ycf2. Although the function of Ycf1 is unknown,
it is known to be an essential gene.
Length = 832
Score = 40.0 bits (94), Expect = 0.002
Identities = 18/71 (25%), Positives = 39/71 (54%)
Query: 8 KKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKN 67
KK K+ T+++E+ + + E K TK++++ ++ S EEK+ K ++ +K
Sbjct: 224 KKLKETSETEEREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTEDLDKL 283
Query: 68 KNRKEEKKKKK 78
+ KE+K ++
Sbjct: 284 EILKEKKDEEL 294
Score = 36.5 bits (85), Expect = 0.026
Identities = 19/70 (27%), Positives = 35/70 (50%)
Query: 87 KNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNK 146
K K S EE+++E + E + T + K + EE E+K+ K ++ +K +
Sbjct: 225 KLKETSETEEREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTEDLDKLE 284
Query: 147 SRKEEEEEEK 156
KE+++EE
Sbjct: 285 ILKEKKDEEL 294
Score = 34.6 bits (80), Expect = 0.090
Identities = 15/67 (22%), Positives = 32/67 (47%)
Query: 109 KNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRT 168
K KE ++ + R+EE + + E + K +++E + + EE++ K + K
Sbjct: 225 KLKETSETEEREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTEDLDKLE 284
Query: 169 KKKEEEK 175
KE++
Sbjct: 285 ILKEKKD 291
Score = 33.8 bits (78), Expect = 0.19
Identities = 15/71 (21%), Positives = 35/71 (49%)
Query: 58 RTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNK 117
K KE ++ + R+EE + + ++ K + + E+ E+K+ +K ++ +K
Sbjct: 223 TKKLKETSETEEREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTEDLDK 282
Query: 118 SRKEEEEKKKE 128
+E+K +E
Sbjct: 283 LEILKEKKDEE 293
Score = 32.3 bits (74), Expect = 0.48
Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 11/80 (13%)
Query: 21 KNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKR 80
K K S EE EE+ + E + K TK++++ + ++K+
Sbjct: 225 KLKETSETEEREEETDVEIETT-----------SETKGTKQEQEGSTEEDPSLFSEEKED 273
Query: 81 RTKKKEKNKNKSRKEEKKKE 100
K ++ +K + KE+K +E
Sbjct: 274 PDKTEDLDKLEILKEKKDEE 293
Score = 31.9 bits (73), Expect = 0.69
Identities = 13/71 (18%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Query: 43 KKNKNKSRKEEEKKKRTKKKEKNKNKNR--KEEKKKKKKRRTKKKEKNKNKSRKEEKKKE 100
KK K S EE +++ + E +E++ ++ + E+ ++ + E+ K
Sbjct: 224 KKLKETSETEEREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTEDLDKL 283
Query: 101 AEEEKKKTKNK 111
++KK +
Sbjct: 284 EILKEKKDEEL 294
Score = 30.7 bits (70), Expect = 1.5
Identities = 13/69 (18%), Positives = 32/69 (46%)
Query: 18 KKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKK 77
KK K +++ + EEE + K + ++ ++ + E+ ++ ++ E+ K
Sbjct: 224 KKLKETSETEEREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTEDLDKL 283
Query: 78 KKRRTKKKE 86
+ + KK E
Sbjct: 284 EILKEKKDE 292
>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division
and chromosome partitioning].
Length = 420
Score = 39.3 bits (92), Expect = 0.003
Identities = 30/204 (14%), Positives = 67/204 (32%), Gaps = 20/204 (9%)
Query: 10 KKKKRRTKKKEKNKNKSRKEEEEEKR--------TKKKEKNKKNKNK-SRKEEEKKKRTK 60
KK +++ N +E E++R ++ +N S ++ ++ R
Sbjct: 90 KKLRKQIADLNARLNALEVQEREQRRRLAEQLAALQRSGRNPPPALLVSPEDAQRSVRLA 149
Query: 61 KKEKNKNKNRKEEKKKKKK--------RRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKE 112
N R E K R E+ + + E++ + + + + ++
Sbjct: 150 IYYGALNPARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERK 209
Query: 113 KNKNK--SRKEEEEKKKEAEEKKKKRTKKK-EKNKNKSRKEEEEEEKKKKKKKKKKKRTK 169
K + S ++KK E + R K + + + K E + + +
Sbjct: 210 KTLAQLNSELSADQKKLEELRANESRLKNEIASAEAAAAKAREAAAAAEAAAARARAAEA 269
Query: 170 KKEEEKRKNEKAVRLTKLSAFGIS 193
K+ E K ++ S G
Sbjct: 270 KRTGETYKPTAPEKMLISSTGGFG 293
Score = 34.7 bits (80), Expect = 0.091
Identities = 29/211 (13%), Positives = 67/211 (31%), Gaps = 30/211 (14%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNK-NKSRKEEEEEKRT---KKKEKNKKNKNKSRKEEEKKK 57
+ +KE +KK R ++ ++ K K K E E + + E K ++ +
Sbjct: 42 QIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNA 101
Query: 58 RTKKKEKNKNKNRKE----------------------EKKKKKKRRTKKKEKNKNKSRKE 95
R E + + R+ + ++ R N +R E
Sbjct: 102 RLNALEVQEREQRRRLAEQLAALQRSGRNPPPALLVSPEDAQRSVRLAIYYGALNPARAE 161
Query: 96 EK---KKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEE 152
K ++ + + E++ + + + ++K K + E
Sbjct: 162 RIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERK-KTLAQLNSELS 220
Query: 153 EEEKKKKKKKKKKKRTKKKEEEKRKNEKAVR 183
++KK ++ + + R K + R
Sbjct: 221 ADQKKLEELRANESRLKNEIASAEAAAAKAR 251
Score = 30.1 bits (68), Expect = 2.3
Identities = 16/103 (15%), Positives = 38/103 (36%), Gaps = 1/103 (0%)
Query: 5 KEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEK 64
K+ + + ++ E S + ++ K + E+ KK + E + K +E
Sbjct: 171 KQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSAD-QKKLEEL 229
Query: 65 NKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKK 107
N++R + + + K + + + A E K+
Sbjct: 230 RANESRLKNEIASAEAAAAKAREAAAAAEAAAARARAAEAKRT 272
Score = 29.3 bits (66), Expect = 4.2
Identities = 13/89 (14%), Positives = 32/89 (35%), Gaps = 5/89 (5%)
Query: 6 EEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKN 65
E++ ++ K +E+ K ++ E KK E+ + N+++ + E + K +
Sbjct: 193 EQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAEAAAAKAR- 251
Query: 66 KNKNRKEEKKKKKKRRTKKKEKNKNKSRK 94
+ R + E +
Sbjct: 252 ----EAAAAAEAAAARARAAEAKRTGETY 276
>gnl|CDD|226889 COG4487, COG4487, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 438
Score = 39.4 bits (92), Expect = 0.003
Identities = 35/167 (20%), Positives = 75/167 (44%), Gaps = 2/167 (1%)
Query: 18 KKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKK 77
++E EE EK +K ++ K + +++ +K++ KN ++ K+ +
Sbjct: 33 EQEDQSRILNTLEEFEKEANEKRAQYRSAKKKELSQLEEQLINQKKEQKNLFNEQIKQFE 92
Query: 78 KKRRTKKKEKNKNKSRKEEKKKEAE--EEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKK 135
+ + + + EK KE E E++ +KE K E +KK K ++
Sbjct: 93 LALQDEIAKLEALELLNLEKDKELELLEKELDELSKELQKQLQNTAEIIEKKRENNKNEE 152
Query: 136 RTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKAV 182
R K + + K + E E E+ +++ + K+ EE+R+++ A+
Sbjct: 153 RLKFENEKKLEESLELEREKFEEQLHEANLDLEFKENEEQRESKWAI 199
Score = 38.6 bits (90), Expect = 0.004
Identities = 44/176 (25%), Positives = 84/176 (47%), Gaps = 3/176 (1%)
Query: 4 KKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKE 63
++ EK+ +KR + K K S+ EE+ + KK++KN N+ + E + K E
Sbjct: 45 EEFEKEANEKRAQYRSAKKKELSQLEEQLINQ-KKEQKNLFNEQIKQFELALQDEIAKLE 103
Query: 64 KNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEE 123
+ N EK K+ + K+ ++ + +K+ + EKK+ NK + + K E++
Sbjct: 104 ALELLN--LEKDKELELLEKELDELSKELQKQLQNTAEIIEKKRENNKNEERLKFENEKK 161
Query: 124 EKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNE 179
++ E++K + E N + KE EE+ + K KK KR + ++ + E
Sbjct: 162 LEESLELEREKFEEQLHEANLDLEFKENEEQRESKWAILKKLKRRAELGSQQVQGE 217
Score = 30.2 bits (68), Expect = 2.1
Identities = 28/155 (18%), Positives = 67/155 (43%), Gaps = 6/155 (3%)
Query: 5 KEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEK 64
+KK++K ++ ++ + + E + + + K + + ++E + + +++
Sbjct: 74 INQKKEQKNLFNEQIKQFELALQDEIAKLEALELLNLEKDKELELLEKELDELSKELQKQ 133
Query: 65 NKNKNRKEEKKK---KKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKE 121
+N EKK+ K + R K + + K + E ++++ EE+ + + K E
Sbjct: 134 LQNTAEIIEKKRENNKNEERLKFENEKKLEESLELEREKFEEQLHEANLDLEFK---ENE 190
Query: 122 EEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEK 156
E+ + K A KK KR + + + E E
Sbjct: 191 EQRESKWAILKKLKRRAELGSQQVQGEALELPNES 225
Score = 30.2 bits (68), Expect = 2.3
Identities = 29/145 (20%), Positives = 67/145 (46%), Gaps = 5/145 (3%)
Query: 37 KKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEE 96
K E+ + + + + ++ EK N+ R + + KKK ++ +E+ N +K+E
Sbjct: 22 IKGEQARYKQIEQEDQSRILNTLEEFEKEANEKRAQYRSAKKKELSQLEEQLIN--QKKE 79
Query: 97 KKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKK---KRTKKKEKNKNKSRKEEEE 153
+K E+ K+ + +++ + E E +++ + K + K K + E
Sbjct: 80 QKNLFNEQIKQFELALQDEIAKLEALELLNLEKDKELELLEKELDELSKELQKQLQNTAE 139
Query: 154 EEKKKKKKKKKKKRTKKKEEEKRKN 178
+KK++ K ++R K + E+K +
Sbjct: 140 IIEKKRENNKNEERLKFENEKKLEE 164
>gnl|CDD|221952 pfam13166, AAA_13, AAA domain. This family of domains contain a
P-loop motif that is characteristic of the AAA
superfamily. Many of the proteins in this family are
conjugative transfer proteins. This family includes the
PrrC protein that is thought to be the active component
of the anticodon nuclease.
Length = 713
Score = 39.6 bits (93), Expect = 0.003
Identities = 22/112 (19%), Positives = 46/112 (41%), Gaps = 4/112 (3%)
Query: 6 EEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKN 65
EE + + + + K++ K K E+ E +KKE+ + ++ KK KK + N
Sbjct: 88 EENIEIEAQIEELKKELKKLEEKIEQLEAEIEKKEEELEKAKNKFLDKAWKKLAKKYDSN 147
Query: 66 ----KNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEK 113
++ K+K + K S ++ +A+ + + NK +
Sbjct: 148 LSEALKGLNYKKNFKEKLLKELKSVILNASSLLSLEELKAKIKTLFSSNKPE 199
Score = 39.2 bits (92), Expect = 0.004
Identities = 25/118 (21%), Positives = 44/118 (37%)
Query: 28 KEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEK 87
E E + KKE K + + E E +K+ ++ EK KNK + KK K+ +
Sbjct: 91 IEIEAQIEELKKELKKLEEKIEQLEAEIEKKEEELEKAKNKFLDKAWKKLAKKYDSNLSE 150
Query: 88 NKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKN 145
++ KE ++ K+ + S +E + K K K +
Sbjct: 151 ALKGLNYKKNFKEKLLKELKSVILNASSLLSLEELKAKIKTLFSSNKPELALLTLSVI 208
Score = 37.3 bits (87), Expect = 0.014
Identities = 24/104 (23%), Positives = 43/104 (41%), Gaps = 1/104 (0%)
Query: 57 KRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKN 116
+ + E + +KE KK ++K + E K + E+ K + ++ K K+ + N
Sbjct: 88 EENIEIEAQIEELKKELKKLEEKIEQLEAEIEKKEEELEKAKNKFLDKAWKKLAKKYDSN 147
Query: 117 KSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKK 160
S + K+ ++K + K N S EE K K K
Sbjct: 148 LSEALKGLNYKKNFKEKLLKELKSVIL-NASSLLSLEELKAKIK 190
Score = 36.9 bits (86), Expect = 0.017
Identities = 26/112 (23%), Positives = 48/112 (42%)
Query: 62 KEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKE 121
+E + + + EE KK+ K+ +K E+ + + K+E++ E + K K +K K
Sbjct: 88 EENIEIEAQIEELKKELKKLEEKIEQLEAEIEKKEEELEKAKNKFLDKAWKKLAKKYDSN 147
Query: 122 EEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEE 173
E K KK + K ++ K+ ++ K K K + K E
Sbjct: 148 LSEALKGLNYKKNFKEKLLKELKSVILNASSLLSLEELKAKIKTLFSSNKPE 199
Score = 33.8 bits (78), Expect = 0.18
Identities = 17/56 (30%), Positives = 30/56 (53%)
Query: 124 EKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNE 179
E + + EE KK+ K +EK + + E++EE+ +K K K + KK +K +
Sbjct: 92 EIEAQIEELKKELKKLEEKIEQLEAEIEKKEEELEKAKNKFLDKAWKKLAKKYDSN 147
Score = 32.3 bits (74), Expect = 0.58
Identities = 31/115 (26%), Positives = 46/115 (40%), Gaps = 5/115 (4%)
Query: 43 KKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAE 102
++N + EE KK KK E+ + E +KK++ K K K +K+ K+ KK
Sbjct: 88 EENIEIEAQIEELKKELKKLEEKIEQLEAEIEKKEE-ELEKAKNKFLDKAWKKLAKKYDS 146
Query: 103 ---EEKKKTKNKEKNKNKSRKE-EEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEE 153
E K K+ K K KE + + + K K K S K E
Sbjct: 147 NLSEALKGLNYKKNFKEKLLKELKSVILNASSLLSLEELKAKIKTLFSSNKPELA 201
Score = 30.7 bits (70), Expect = 1.8
Identities = 38/201 (18%), Positives = 80/201 (39%), Gaps = 30/201 (14%)
Query: 28 KEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEK 87
EE +E + +E K ++ K E+ + EK ++ + + ++ K ++
Sbjct: 277 DEEYQELIEQLEELIDKYESHIEKALEELESILDTEKENSEFKLDVEELKALLEALEEIL 336
Query: 88 NKNKSRKEEKKKEA---------------------------EEEKKKTKNKEKNKNKSRK 120
KN + EEK K+ E +K N +K KNK++K
Sbjct: 337 EKNLQKLEEKLKDPSTSIELESITDLIESINDIIDAINELIREHNEKIDNLKKEKNKAKK 396
Query: 121 EEE--EKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKN 178
+ + E+ + +KK K + E+E ++ + + K +K+ + +++
Sbjct: 397 KLWLHLVAELKEDIDAYQKEKKGLEKAINSLEKEIKQLEAEIKALEKEIKELEKQLTNIE 456
Query: 179 EKAVRLTK-LSAFGISGYLLQ 198
A + K L A+G + L+
Sbjct: 457 PTADEINKLLKAYGFGNFELE 477
Score = 28.4 bits (64), Expect = 8.7
Identities = 12/65 (18%), Positives = 31/65 (47%)
Query: 132 KKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKAVRLTKLSAFG 191
++ + + + K K+ EE+ ++ + + +KK+ +K + K ++ +L K
Sbjct: 88 EENIEIEAQIEELKKELKKLEEKIEQLEAEIEKKEEELEKAKNKFLDKAWKKLAKKYDSN 147
Query: 192 ISGYL 196
+S L
Sbjct: 148 LSEAL 152
Score = 28.4 bits (64), Expect = 8.7
Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Query: 103 EEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKK 162
EE + + + + K K+ EEK ++ E + +K+ ++ EK KNK ++ KK KK
Sbjct: 88 EENIEIEAQIEELKKELKKLEEKIEQLEAEIEKKEEELEKAKNKFL----DKAWKKLAKK 143
Query: 163 KKKKRTKKKEEEKRKNEKAVRLTK 186
++ + K +L K
Sbjct: 144 YDSNLSEALKGLNYKKNFKEKLLK 167
>gnl|CDD|240402 PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Provisional.
Length = 651
Score = 39.2 bits (92), Expect = 0.003
Identities = 32/125 (25%), Positives = 52/125 (41%), Gaps = 19/125 (15%)
Query: 37 KKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEE 96
K +K + + K KE K+++ +K K + + +K+E +K +K + E K R+E+
Sbjct: 546 KLDDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEKAKIPPAEFFK---RQED 602
Query: 97 KKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEK 156
K +E T + + EE KK KK K +K K EE
Sbjct: 603 KYSAFDETGLPTHD----------------ADGEEISKKERKKLSKEYDKQAKLHEEYLA 646
Query: 157 KKKKK 161
K K
Sbjct: 647 KGGKS 651
Score = 37.3 bits (87), Expect = 0.014
Identities = 29/103 (28%), Positives = 47/103 (45%), Gaps = 16/103 (15%)
Query: 94 KEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKE--KNKNKS---- 147
KEE ++E EE++ + K K K K+EE+KKKE E+ +K + E K +
Sbjct: 550 KEELQREKEEKEALKEQKRLRKLK--KQEEKKKKELEKLEKAKIPPAEFFKRQEDKYSAF 607
Query: 148 --------RKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKAV 182
+ EE KK++KK K+ + K E+ +
Sbjct: 608 DETGLPTHDADGEEISKKERKKLSKEYDKQAKLHEEYLAKGGK 650
Score = 35.4 bits (82), Expect = 0.050
Identities = 18/44 (40%), Positives = 30/44 (68%)
Query: 138 KKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKA 181
K +K + + KEE+E K++K+ +K KK+ +KK++E K EKA
Sbjct: 546 KLDDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEKA 589
Score = 33.5 bits (77), Expect = 0.23
Identities = 18/62 (29%), Positives = 36/62 (58%), Gaps = 5/62 (8%)
Query: 119 RKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKN 178
++EE ++E EEK + ++ K + +++EE+KKK+ +K +K + E KR+
Sbjct: 547 LDDKEELQREKEEK-----EALKEQKRLRKLKKQEEKKKKELEKLEKAKIPPAEFFKRQE 601
Query: 179 EK 180
+K
Sbjct: 602 DK 603
Score = 33.5 bits (77), Expect = 0.24
Identities = 22/105 (20%), Positives = 50/105 (47%), Gaps = 8/105 (7%)
Query: 4 KKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKE 63
K ++K++ ++ + +K+ + K ++ ++++ KKKE K K K E K++ K
Sbjct: 546 KLDDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEKAKIPPAEFFKRQEDKYS 605
Query: 64 K-------NKNKNRKEEKKKKKKRRTKKKEK-NKNKSRKEEKKKE 100
+ + +E KK++K+ +K+ +K K K +
Sbjct: 606 AFDETGLPTHDADGEEISKKERKKLSKEYDKQAKLHEEYLAKGGK 650
Score = 30.8 bits (70), Expect = 1.3
Identities = 15/48 (31%), Positives = 30/48 (62%)
Query: 142 KNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKAVRLTKLSA 189
K +K + E+EEK+ K++K+ ++ KK+EE+K+K + + K+
Sbjct: 546 KLDDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEKAKIPP 593
>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated.
Length = 646
Score = 39.1 bits (92), Expect = 0.004
Identities = 35/226 (15%), Positives = 81/226 (35%), Gaps = 41/226 (18%)
Query: 18 KKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKK 77
+ K +EE+++ K E+ K+ + ++ EK+ + ++E ++ +N +E +++
Sbjct: 63 RSYLPKLNPLREEKKKVSVKSLEELIKDVEEELEKIEKEIKELEEEISELENEIKELEQE 122
Query: 78 KKRR------------------------TKKKEKNKNKSRKEEKKKEAEEEKKKTKN--- 110
+R T ++K + + + + K
Sbjct: 123 IERLEPWGNFDLDLSLLLGFKYVSVFVGTVPEDKLEELKLESDVENVEYISTDKGYVYVV 182
Query: 111 ----KEKNKNKSR--KEEEEKKKEAEEKK--KKRTKKKEKNKNKSRKEEEEEEKKKKKKK 162
KE + K+ ++ E EE+ + ++ ++ + KE E ++ K+
Sbjct: 183 VVVLKELSDEVEEELKKLGFERLELEEEGTPSELIREIKEELEEIEKERESLLEELKELA 242
Query: 163 KKKKRTKKKEEEKRKNEKAVRLTKLSAFGISGYLLQWIRNFLSGWI 208
KK E + E R LS F + + GW+
Sbjct: 243 KKYLEELLALYEYLEIELE-RAEALSKFLKTDKTFA-----IEGWV 282
Score = 30.3 bits (69), Expect = 2.0
Identities = 22/101 (21%), Positives = 42/101 (41%), Gaps = 3/101 (2%)
Query: 95 EEKKKEAEEEK--KKTKNKEKNKNKSRK-EEEEKKKEAEEKKKKRTKKKEKNKNKSRKEE 151
E+ K+E E+ K K K K ++KK+ K + EE
Sbjct: 34 EDLKEELSNERLRKLRSLLTKLSEALDKLRSYLPKLNPLREEKKKVSVKSLEELIKDVEE 93
Query: 152 EEEEKKKKKKKKKKKRTKKKEEEKRKNEKAVRLTKLSAFGI 192
E E+ +K+ K+ +++ ++ + E K ++ RL F +
Sbjct: 94 ELEKIEKEIKELEEEISELENEIKELEQEIERLEPWGNFDL 134
>gnl|CDD|191249 pfam05279, Asp-B-Hydro_N, Aspartyl beta-hydroxylase N-terminal
region. This family includes the N-terminal regions of
the junctin, junctate and aspartyl beta-hydroxylase
proteins. Junctate is an integral ER/SR membrane calcium
binding protein, which comes from an alternatively
spliced form of the same gene that generates aspartyl
beta-hydroxylase and junctin. Aspartyl beta-hydroxylase
catalyzes the post-translational hydroxylation of
aspartic acid or asparagine residues contained within
epidermal growth factor (EGF) domains of proteins.
Length = 240
Score = 38.0 bits (88), Expect = 0.005
Identities = 31/171 (18%), Positives = 70/171 (40%), Gaps = 11/171 (6%)
Query: 18 KKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTK----KKEKNKNKNRKEE 73
K++ + EE E +++ + K K + EEE K++ + K +K +
Sbjct: 68 KEKSTSEPTVPPEEAEPHAEEEGQLAVRKTKQKVEEEVKEQLQSLLEKIVVSKQEEDGPG 127
Query: 74 KKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKE-------KNKNKSRKEEEEKK 126
K+ + ++ + ++ + + EE + + + E K K + E+E +
Sbjct: 128 KEPQLDEDKFLLAEDSDDRQETLEAGKVHEETEDSYHVEETASEQYKQDMKEKASEQENE 187
Query: 127 KEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRK 177
E +K K E + +EE+ + K K++ K+ EE+++
Sbjct: 188 DSKEPVEKAERTKAETDDVTEEDYDEEDNPVEDSKAIKEELAKEPVEEQQE 238
Score = 37.6 bits (87), Expect = 0.007
Identities = 20/113 (17%), Positives = 46/113 (40%), Gaps = 2/113 (1%)
Query: 69 NRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKE 128
+EE K++ + +K +K + K+ + +E+K ++ ++ E K E
Sbjct: 100 KVEEEVKEQLQSLLEKIVVSKQEEDGPGKEPQLDEDKFLLAEDSDDRQET--LEAGKVHE 157
Query: 129 AEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKA 181
E + + + KE+ E++ + K+ +K + K E E+
Sbjct: 158 ETEDSYHVEETASEQYKQDMKEKASEQENEDSKEPVEKAERTKAETDDVTEED 210
Score = 37.2 bits (86), Expect = 0.008
Identities = 23/139 (16%), Positives = 58/139 (41%), Gaps = 2/139 (1%)
Query: 3 NKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKK 62
+EE K++ + +K +K + +E + + K ++ + ++ E K ++
Sbjct: 100 KVEEEVKEQLQSLLEKIVVSKQEEDGPGKEPQLDEDKFLLAEDSDDRQETLEAGKVHEET 159
Query: 63 EKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEE 122
E + + ++ K+ + K E+ S +E ++AE K +T + +
Sbjct: 160 EDSYHVEETASEQYKQDMKEKASEQENEDS--KEPVEKAERTKAETDDVTEEDYDEEDNP 217
Query: 123 EEKKKEAEEKKKKRTKKKE 141
E K +E+ K +++
Sbjct: 218 VEDSKAIKEELAKEPVEEQ 236
Score = 35.7 bits (82), Expect = 0.031
Identities = 25/149 (16%), Positives = 65/149 (43%), Gaps = 4/149 (2%)
Query: 17 KKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKK 76
+K K K + +E+ + +K +K+ ++ KE + + ++ + ++ +
Sbjct: 94 VRKTKQKVEEEVKEQLQSLLEKIVVSKQEEDGPGKEPQLDEDKFLLAEDSDDRQETLEAG 153
Query: 77 KKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKR 136
K T+ + + E+ K++ +E K +E +K E+ E+ K + +
Sbjct: 154 KVHEETEDSYHVEETAS-EQYKQDMKE---KASEQENEDSKEPVEKAERTKAETDDVTEE 209
Query: 137 TKKKEKNKNKSRKEEEEEEKKKKKKKKKK 165
+E N + K +EE K+ +++++
Sbjct: 210 DYDEEDNPVEDSKAIKEELAKEPVEEQQE 238
Score = 34.5 bits (79), Expect = 0.075
Identities = 22/133 (16%), Positives = 54/133 (40%), Gaps = 5/133 (3%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKK 61
K K+++ K+ + +++K E+ + R + E K +E E ++
Sbjct: 113 LEKIVVSKQEEDGPGKEPQLDEDKFLLAEDSDDRQETLE-----AGKVHEETEDSYHVEE 167
Query: 62 KEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKE 121
+ K +EK +++ K+ K + K E EE+ + N ++ ++E
Sbjct: 168 TASEQYKQDMKEKASEQENEDSKEPVEKAERTKAETDDVTEEDYDEEDNPVEDSKAIKEE 227
Query: 122 EEEKKKEAEEKKK 134
++ E +++
Sbjct: 228 LAKEPVEEQQEVP 240
Score = 31.4 bits (71), Expect = 0.65
Identities = 25/106 (23%), Positives = 47/106 (44%), Gaps = 4/106 (3%)
Query: 83 KKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRT----K 138
+K K K + +E+ + E+ +K +E K + +E+K AE+ ++
Sbjct: 94 VRKTKQKVEEEVKEQLQSLLEKIVVSKQEEDGPGKEPQLDEDKFLLAEDSDDRQETLEAG 153
Query: 139 KKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKAVRL 184
K + S EE ++ K+ K+K ++ E+ K EKA R
Sbjct: 154 KVHEETEDSYHVEETASEQYKQDMKEKASEQENEDSKEPVEKAERT 199
>gnl|CDD|220365 pfam09726, Macoilin, Transmembrane protein. This entry is a highly
conserved protein present in eukaryotes.
Length = 680
Score = 38.7 bits (90), Expect = 0.005
Identities = 39/190 (20%), Positives = 78/190 (41%), Gaps = 15/190 (7%)
Query: 4 KKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKK------ 57
K++ T + +NK E+ + +K + ++R+ E + +
Sbjct: 380 SKKDASGMSANGTVENCIPENKISTPSAIERLEQDIKKLQAELQQARQNESELRNQISLL 439
Query: 58 ----RTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEK 113
R+ K + + K + + K K+K+K + EK+ ++E + + K+
Sbjct: 440 TSLERSLKSDLGQLKKENDMLQTKLNSMVSAKQKDKQSMQSMEKRLKSEADSRVNAEKQL 499
Query: 114 NKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEE 173
+ K RK+EEE+ + ++++ K K++ E E KK + K KEE
Sbjct: 500 AEEKKRKKEEEETAARAAAQAAASREECAESLKQAKQDLEMEIKKLEHD-----LKLKEE 554
Query: 174 EKRKNEKAVR 183
E R EK +
Sbjct: 555 ECRMLEKEAQ 564
Score = 32.2 bits (73), Expect = 0.53
Identities = 39/169 (23%), Positives = 75/169 (44%), Gaps = 18/169 (10%)
Query: 17 KKKEKNKNKSRKEEEEEKRT----KKKEKNKKNKNKSRKEEEKKKRTK------KKEKNK 66
KK + ++R+ E E + E++ K+ K+E +TK K+K+K
Sbjct: 416 KKLQAELQQARQNESELRNQISLLTSLERSLKSDLGQLKKENDMLQTKLNSMVSAKQKDK 475
Query: 67 NKNRKEEKKKKKKRRTKKK-EKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEK 125
+ EK+ K + ++ EK + +K +KKE EE + + + E ++
Sbjct: 476 QSMQSMEKRLKSEADSRVNAEKQLAEEKK--RKKEEEETAARAAAQAAASREECAESLKQ 533
Query: 126 KKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEE 174
K+ E + K+ + K KEEE +K+ ++ +K + +KE E
Sbjct: 534 AKQDLEMEIKKLEHDLKL-----KEEECRMLEKEAQELRKYQESEKETE 577
>gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function
unknown].
Length = 652
Score = 38.5 bits (90), Expect = 0.005
Identities = 27/114 (23%), Positives = 57/114 (50%), Gaps = 3/114 (2%)
Query: 5 KEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEK 64
KEE++ ++K T+++E+ + ++ ++ + ++N R+ EE K+ +K E
Sbjct: 398 KEEERPREKEGTEEEERREITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLES 457
Query: 65 NKNKNRKEEKKKKKKRR---TKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNK 115
+ R+E + K +K R + + + + EEKKK EE ++K K +
Sbjct: 458 ELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAELRKMR 511
Score = 38.5 bits (90), Expect = 0.006
Identities = 32/113 (28%), Positives = 58/113 (51%), Gaps = 7/113 (6%)
Query: 26 SRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKK 85
S+ +EEE R EK + + R+ +KR KK E+ + +E + K++ K+
Sbjct: 395 SKVKEEERPR----EKEGTEEEERREITVYEKRIKKLEETVERLEEENSELKRELEELKR 450
Query: 86 EKNKNKSRKEEKKKEAEEEKKKTK---NKEKNKNKSRKEEEEKKKEAEEKKKK 135
E K +S E ++E ++ +K + +++ + KE EEKKK EE ++K
Sbjct: 451 EIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERK 503
Score = 37.8 bits (88), Expect = 0.010
Identities = 31/123 (25%), Positives = 68/123 (55%), Gaps = 5/123 (4%)
Query: 71 KEEKKKKKKRRTKKKEKNKNKS-RKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEA 129
KEE++ ++K T+++E+ + K KK E E+ + +N E K EE +++ E
Sbjct: 398 KEEERPREKEGTEEEERREITVYEKRIKKLEETVERLEEENSEL---KRELEELKREIEK 454
Query: 130 EEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEE-KRKNEKAVRLTKLS 188
E + +R +++ ++K + +E +++ ++ +K+ + KK+ EE +RK + ++ KL
Sbjct: 455 LESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAELRKMRKLE 514
Query: 189 AFG 191
G
Sbjct: 515 LSG 517
Score = 36.6 bits (85), Expect = 0.026
Identities = 29/123 (23%), Positives = 64/123 (52%), Gaps = 6/123 (4%)
Query: 58 RTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNK 117
+ K++E+ + K EE+++++ +K+ K K + E ++E E K++ + ++ K
Sbjct: 396 KVKEEERPREKEGTEEEERREITVYEKRIK-KLEETVERLEEENSELKRELEELKREIEK 454
Query: 118 SRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRK 177
E E ++E +K +K + + + + E EK+ ++KKK+ + ++K E RK
Sbjct: 455 LESELERFRREVRDKVRKDREIRAR-----DRRIERLEKELEEKKKRVEELERKLAELRK 509
Query: 178 NEK 180
K
Sbjct: 510 MRK 512
Score = 36.2 bits (84), Expect = 0.035
Identities = 34/150 (22%), Positives = 67/150 (44%), Gaps = 19/150 (12%)
Query: 30 EEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNK 89
+ ++ + +EK + + R+ +KR KK E+ + +E + K++ K+E K
Sbjct: 395 SKVKEEERPREKEGTEEEERREITVYEKRIKKLEETVERLEEENSELKRELEELKREIEK 454
Query: 90 NKSRKEEKKKEAEEEKKKTK---NKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNK-- 144
+S E ++E ++ +K + +++ + KE EEKKK EE ++K + ++ K
Sbjct: 455 LESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAELRKMRKLE 514
Query: 145 --------------NKSRKEEEEEEKKKKK 160
EE EEE K+
Sbjct: 515 LSGKGTPVKVVEKLTLEAIEEAEEEYGIKE 544
Score = 32.8 bits (75), Expect = 0.40
Identities = 28/120 (23%), Positives = 58/120 (48%), Gaps = 2/120 (1%)
Query: 66 KNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEA-EEEKKKTKNKEKNKNKSRKEEEE 124
K K K E+K + K E+ K + EA + K++ + +EK + + E
Sbjct: 358 KPKLEKVERKLPELGIWKDVERIKALVIRGYPLAEALSKVKEEERPREKEGTEEEERREI 417
Query: 125 KKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKK-KKKKKRTKKKEEEKRKNEKAVR 183
E KK + T ++ + +N K E EE K++ +K + + +R +++ +K + ++ +R
Sbjct: 418 TVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIR 477
Score = 29.3 bits (66), Expect = 4.7
Identities = 25/124 (20%), Positives = 60/124 (48%)
Query: 7 EKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNK 66
EK+ KK T ++ + +N K E EE + + ++ + + R+ +K ++ ++
Sbjct: 421 EKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARD 480
Query: 67 NKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKK 126
+ + EK+ ++K++ ++ + K ++ +K E + K EK ++ +E EE+
Sbjct: 481 RRIERLEKELEEKKKRVEELERKLAELRKMRKLELSGKGTPVKVVEKLTLEAIEEAEEEY 540
Query: 127 KEAE 130
E
Sbjct: 541 GIKE 544
>gnl|CDD|215565 PLN03083, PLN03083, E3 UFM1-protein ligase 1 homolog; Provisional.
Length = 803
Score = 38.6 bits (90), Expect = 0.006
Identities = 19/60 (31%), Positives = 31/60 (51%)
Query: 10 KKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKN 69
KKKK ++ + +S ++EE+ K K+ KK ++KS K K KKE K++
Sbjct: 421 KKKKGKSTSTKGGTAESIPDDEEDAPKKGKKNQKKGRDKSSKVPSDSKAGGKKESVKSQE 480
Score = 37.9 bits (88), Expect = 0.010
Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 3/87 (3%)
Query: 59 TKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKS 118
K N++ K K++ K K + + E + KK KN++K ++KS
Sbjct: 401 EKSLGSNESSPAASNSDKGSKKKKGKSTSTKGGTAESIPDDEEDAPKKGKKNQKKGRDKS 460
Query: 119 RKEEEEKKKEAEEKKKKRTKKKEKNKN 145
K + K KK+ K +E N N
Sbjct: 461 SKVPSDSKAGG---KKESVKSQEDNNN 484
Score = 37.5 bits (87), Expect = 0.012
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Query: 4 KKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKK--KRTKK 61
K KKKK K + K ++ EE+ K+ KK +K ++K+ + K K+
Sbjct: 417 DKGSKKKKGKSTSTKGGTAESIPDDEEDAPKKGKKNQKKGRDKSSKVPSDSKAGGKKESV 476
Query: 62 KEKNKNKNRKEEKKKKKK 79
K + N N E+ KK
Sbjct: 477 KSQEDNNNIPPEEWVMKK 494
Score = 35.6 bits (82), Expect = 0.047
Identities = 23/87 (26%), Positives = 32/87 (36%), Gaps = 6/87 (6%)
Query: 85 KEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNK 144
KE + + EK N E + S ++ KKK K K T K
Sbjct: 382 KEMDAFSIQASSAGLIGSSEKSLGSN-ESSPAASNSDKGSKKK-----KGKSTSTKGGTA 435
Query: 145 NKSRKEEEEEEKKKKKKKKKKKRTKKK 171
+EE+ KK KK +KK + K
Sbjct: 436 ESIPDDEEDAPKKGKKNQKKGRDKSSK 462
Score = 34.8 bits (80), Expect = 0.097
Identities = 19/94 (20%), Positives = 41/94 (43%), Gaps = 4/94 (4%)
Query: 82 TKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKE 141
K N++ K ++++K K+ + + +S ++EE KK K+ +KK
Sbjct: 401 EKSLGSNESSPAASNSDKGSKKKKGKSTSTKGGTAESIPDDEE----DAPKKGKKNQKKG 456
Query: 142 KNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEK 175
++K+ + + KK+ K ++ EE
Sbjct: 457 RDKSSKVPSDSKAGGKKESVKSQEDNNNIPPEEW 490
Score = 33.6 bits (77), Expect = 0.22
Identities = 18/84 (21%), Positives = 35/84 (41%), Gaps = 5/84 (5%)
Query: 36 TKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRK-----EEKKKKKKRRTKKKEKNKN 90
K N+ + S ++ KK+ K K + EE KK ++ +KK ++K+
Sbjct: 401 EKSLGSNESSPAASNSDKGSKKKKGKSTSTKGGTAESIPDDEEDAPKKGKKNQKKGRDKS 460
Query: 91 KSRKEEKKKEAEEEKKKTKNKEKN 114
+ K ++E K++ N
Sbjct: 461 SKVPSDSKAGGKKESVKSQEDNNN 484
Score = 32.9 bits (75), Expect = 0.38
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Query: 3 NKKEEKKKKKKRRTKKKEKNKNKSRKEEEEE----KRTKKKEKNKKNKNKSRKEEEKKKR 58
N + KKKK + T K +EE+ K+ +KK ++K +K S + KK
Sbjct: 415 NSDKGSKKKKGKSTSTKGGTAESIPDDEEDAPKKGKKNQKKGRDKSSKVPSDSKAGGKKE 474
Query: 59 TKKKEKNKNKNRKEEKKKKK 78
+ K +++ N EE KK
Sbjct: 475 SVKSQEDNNNIPPEEWVMKK 494
Score = 32.5 bits (74), Expect = 0.44
Identities = 25/101 (24%), Positives = 42/101 (41%), Gaps = 6/101 (5%)
Query: 26 SRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKK 85
S K + + + K K +K K T K +E+ KK + K +
Sbjct: 400 SEKSLGSNESSPAASNSDKGSKK-----KKGKSTSTKGGTAESIPDDEEDAPKKGK-KNQ 453
Query: 86 EKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKK 126
+K ++KS K +A +K+ K++E N N +E KK
Sbjct: 454 KKGRDKSSKVPSDSKAGGKKESVKSQEDNNNIPPEEWVMKK 494
Score = 31.7 bits (72), Expect = 0.73
Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 9/84 (10%)
Query: 16 TKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKS----RKEEE----KKKRTKKKEKNKN 67
K N++ ++ KKK K+ K + +EE K K+ +KK ++K+
Sbjct: 401 EKSLGSNESSPAASNSDKGSKKKKGKSTSTKGGTAESIPDDEEDAPKKGKKNQKKGRDKS 460
Query: 68 KNRKEEKKK-KKKRRTKKKEKNKN 90
+ K KK K +E N N
Sbjct: 461 SKVPSDSKAGGKKESVKSQEDNNN 484
>gnl|CDD|237753 PRK14552, PRK14552, C/D box methylation guide ribonucleoprotein
complex aNOP56 subunit; Provisional.
Length = 414
Score = 38.4 bits (90), Expect = 0.006
Identities = 21/54 (38%), Positives = 37/54 (68%), Gaps = 1/54 (1%)
Query: 124 EKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRK 177
++ KE K+ + K+K K +K EE++ +K+KKKKK+KK+ KK++++ RK
Sbjct: 362 DELKEELNKRIEEIKEKYPKPPK-KKREEKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 36.1 bits (84), Expect = 0.027
Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 6/51 (11%)
Query: 119 RKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTK 169
++ EE K+K + KKKR +KK + + K +K +KKK KK+KKK K
Sbjct: 370 KRIEEIKEKYPKPPKKKREEKKPQKRKKKKK------RKKKGKKRKKKGRK 414
Score = 35.7 bits (83), Expect = 0.042
Identities = 22/50 (44%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 51 KEEEKKKRTKKKEKNKN-KNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKK 99
KEE K+ + KEK +K E+KK +KR+ KKK K K K RK++ +K
Sbjct: 365 KEELNKRIEEIKEKYPKPPKKKREEKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 34.6 bits (80), Expect = 0.089
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 12/62 (19%)
Query: 119 RKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKN 178
++E ++ +E +EK K KKK EEKK +K+KKKKKR KK ++ K+K
Sbjct: 365 KEELNKRIEEIKEKYPKPPKKKR------------EEKKPQKRKKKKKRKKKGKKRKKKG 412
Query: 179 EK 180
K
Sbjct: 413 RK 414
Score = 34.6 bits (80), Expect = 0.089
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 50 RKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRK 94
++ EE K++ K K K + +K +K+KKKK+R KK +K K K RK
Sbjct: 370 KRIEEIKEKYPKPPKKKREEKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 34.6 bits (80), Expect = 0.098
Identities = 20/39 (51%), Positives = 25/39 (64%)
Query: 111 KEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRK 149
KEK +K+ EEKK + +KKKKR KK +K K K RK
Sbjct: 376 KEKYPKPPKKKREEKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 33.4 bits (77), Expect = 0.19
Identities = 16/50 (32%), Positives = 32/50 (64%)
Query: 38 KKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEK 87
K+E NK+ + K + K+ ++++K + + +K+++KKK K+R KK K
Sbjct: 365 KEELNKRIEEIKEKYPKPPKKKREEKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 33.4 bits (77), Expect = 0.21
Identities = 22/50 (44%), Positives = 33/50 (66%), Gaps = 2/50 (4%)
Query: 30 EEEEKRTKK-KEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKK 78
EE KR ++ KEK K K ++EE+K ++ KKK+K K K +K +KK +K
Sbjct: 366 EELNKRIEEIKEKYPKPP-KKKREEKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 33.0 bits (76), Expect = 0.30
Identities = 16/50 (32%), Positives = 31/50 (62%)
Query: 8 KKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKK 57
K++ KR + KEK +K+ EE+K K+K+K K+ K +++++ +K
Sbjct: 365 KEELNKRIEEIKEKYPKPPKKKREEKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 29.6 bits (67), Expect = 2.9
Identities = 16/49 (32%), Positives = 28/49 (57%)
Query: 7 EKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEK 55
E+ K+ K+K K ++EE++ ++ KKK+K KK K +K+ K
Sbjct: 366 EELNKRIEEIKEKYPKPPKKKREEKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 28.8 bits (65), Expect = 5.2
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 4 KKEEKKKKKKRRTKKKEKNKNKSRKEEEEE 33
KK E+KK +KR+ KKK K K K RK++ +
Sbjct: 385 KKREEKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 28.8 bits (65), Expect = 5.3
Identities = 18/55 (32%), Positives = 36/55 (65%), Gaps = 2/55 (3%)
Query: 52 EEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKK 106
+E K++ K+ E+ K K K KKK+++++ +K++ K K RK++ KK ++ +K
Sbjct: 362 DELKEELNKRIEEIKEKYPKPPKKKREEKKPQKRK--KKKKRKKKGKKRKKKGRK 414
Score = 28.8 bits (65), Expect = 6.1
Identities = 18/45 (40%), Positives = 29/45 (64%)
Query: 27 RKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRK 71
++ EE +++ K K K+ + K +K ++KKKR KK +K K K RK
Sbjct: 370 KRIEEIKEKYPKPPKKKREEKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 28.4 bits (64), Expect = 6.9
Identities = 16/49 (32%), Positives = 27/49 (55%)
Query: 73 EKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKE 121
E+ K+ K+K K ++EEKK + ++KKK K K K + K ++
Sbjct: 366 EELNKRIEEIKEKYPKPPKKKREEKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 28.4 bits (64), Expect = 7.7
Identities = 17/46 (36%), Positives = 30/46 (65%)
Query: 3 NKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNK 48
NK+ E+ K+K + KK++ + K +K ++++KR KK +K KK K
Sbjct: 369 NKRIEEIKEKYPKPPKKKREEKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 28.4 bits (64), Expect = 8.0
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 64 KNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEK 113
K + R EE K+K + KKK + K ++++KKK ++ KK+ K K
Sbjct: 365 KEELNKRIEEIKEKYPKPPKKKREEKKPQKRKKKKKRKKKGKKRKKKGRK 414
>gnl|CDD|227891 COG5604, COG5604, Uncharacterized conserved protein [Function
unknown].
Length = 523
Score = 38.3 bits (89), Expect = 0.006
Identities = 26/100 (26%), Positives = 44/100 (44%), Gaps = 1/100 (1%)
Query: 56 KKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNK 115
KK TK KN RK+ + KK K + +++ E + + K+K +
Sbjct: 9 KKFTKNHLKNTIDRRKQ-LARSKKVYGTKNRNSHTENKMESGTNDNNKNKEKLSKLYSDV 67
Query: 116 NKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEE 155
+ S EEEE E+ K +KK N+ ++K +E +
Sbjct: 68 DSSSSEEEEDGSESISKLNVNSKKISLNQVSTQKWRKELD 107
Score = 37.2 bits (86), Expect = 0.013
Identities = 27/108 (25%), Positives = 40/108 (37%), Gaps = 10/108 (9%)
Query: 76 KKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKK 135
K K+ TK KN RK+ + K KN+N + + E K K+
Sbjct: 6 KATKKFTKNHLKNTIDRRKQLARS-------KKVYGTKNRNSHTENKMESGTNDNNKNKE 58
Query: 136 RTKKKEKNKNKSRKEEEE---EEKKKKKKKKKKKRTKKKEEEKRKNEK 180
+ K + + S EEEE E K KK + +K + E
Sbjct: 59 KLSKLYSDVDSSSSEEEEDGSESISKLNVNSKKISLNQVSTQKWRKEL 106
Score = 34.5 bits (79), Expect = 0.091
Identities = 24/108 (22%), Positives = 44/108 (40%), Gaps = 1/108 (0%)
Query: 11 KKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNR 70
K + TKK KN K+ + ++ KK KN+N S E + + T KNK K
Sbjct: 3 KASKATKKFTKNHLKNTIDRRKQLARSKKVYGTKNRN-SHTENKMESGTNDNNKNKEKLS 61
Query: 71 KEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKS 118
K ++++ +++ S+ K+ + T+ K +
Sbjct: 62 KLYSDVDSSSSEEEEDGSESISKLNVNSKKISLNQVSTQKWRKELDLL 109
Score = 30.2 bits (68), Expect = 2.4
Identities = 22/131 (16%), Positives = 47/131 (35%), Gaps = 16/131 (12%)
Query: 4 KKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKE 63
+++K+ R K S E + E T KNK+ +K + + ++++
Sbjct: 18 NTIDRRKQLARSKKVYGTKNRNSHTENKMESGTNDNNKNKEKLSKLYSDVDSSSSEEEED 77
Query: 64 KNKNKNRKEEKKKK-----KKRRTKKKEKNKNKSRKEEKK-----------KEAEEEKKK 107
+++ ++ KK + +KE + S +K EE+ K
Sbjct: 78 GSESISKLNVNSKKISLNQVSTQKWRKELDLLASLAYLQKLSGAFKAAALLNNEEEDLKY 137
Query: 108 TKNKEKNKNKS 118
T + K +
Sbjct: 138 TIDDVKFFARL 148
Score = 28.3 bits (63), Expect = 8.2
Identities = 16/100 (16%), Positives = 36/100 (36%)
Query: 38 KKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEK 97
KK KN + ++ + K + E K + K ++ +K +
Sbjct: 9 KKFTKNHLKNTIDRRKQLARSKKVYGTKNRNSHTENKMESGTNDNNKNKEKLSKLYSDVD 68
Query: 98 KKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRT 137
+EEE+ +++ K S+K + + +K+
Sbjct: 69 SSSSEEEEDGSESISKLNVNSKKISLNQVSTQKWRKELDL 108
>gnl|CDD|184900 PRK14907, rplD, 50S ribosomal protein L4; Provisional.
Length = 295
Score = 38.0 bits (88), Expect = 0.006
Identities = 24/101 (23%), Positives = 40/101 (39%)
Query: 70 RKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEA 129
+K KKK + + +K + KK A+ K K K++ + KK
Sbjct: 5 KKTTKKKTTEEKKPAAKKATTSKETAKTKKTAKTTSTKAAKKAAKVKKTKSVKTTTKKVT 64
Query: 130 EEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKK 170
+ +K + KKE K+ K+E + + K K T K
Sbjct: 65 VKFEKTESVKKESVAKKTVKKEAVSAEVFEASNKLFKNTSK 105
Score = 36.1 bits (83), Expect = 0.022
Identities = 20/97 (20%), Positives = 39/97 (40%)
Query: 79 KRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTK 138
K+ TKKK + K ++ E K K K + ++K + KK ++ + K+
Sbjct: 5 KKTTKKKTTEEKKPAAKKATTSKETAKTKKTAKTTSTKAAKKAAKVKKTKSVKTTTKKVT 64
Query: 139 KKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEK 175
K + +KE ++ KK+ + + K
Sbjct: 65 VKFEKTESVKKESVAKKTVKKEAVSAEVFEASNKLFK 101
Score = 35.3 bits (81), Expect = 0.045
Identities = 25/97 (25%), Positives = 36/97 (37%), Gaps = 2/97 (2%)
Query: 82 TKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKE 141
TKK K K K+ K+A K K K K+ + KK +K K +
Sbjct: 4 TKKTTKKKTTEEKKPAAKKAT--TSKETAKTKKTAKTTSTKAAKKAAKVKKTKSVKTTTK 61
Query: 142 KNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKN 178
K K K E +++ KK KK+ + E
Sbjct: 62 KVTVKFEKTESVKKESVAKKTVKKEAVSAEVFEASNK 98
Score = 35.3 bits (81), Expect = 0.049
Identities = 24/89 (26%), Positives = 38/89 (42%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKK 61
K EEKK K+ T KE K K + K KK K KK K+ ++ + +K
Sbjct: 10 KKTTEEKKPAAKKATTSKETAKTKKTAKTTSTKAAKKAAKVKKTKSVKTTTKKVTVKFEK 69
Query: 62 KEKNKNKNRKEEKKKKKKRRTKKKEKNKN 90
E K ++ ++ KK+ + E +
Sbjct: 70 TESVKKESVAKKTVKKEAVSAEVFEASNK 98
Score = 34.5 bits (79), Expect = 0.074
Identities = 27/109 (24%), Positives = 41/109 (37%), Gaps = 1/109 (0%)
Query: 56 KKRTKKKEKNKNKNRKEEKKKK-KKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKN 114
TKK K K K+ KK + K K K+ + K+A + KK K
Sbjct: 1 MAETKKTTKKKTTEEKKPAAKKATTSKETAKTKKTAKTTSTKAAKKAAKVKKTKSVKTTT 60
Query: 115 KNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKK 163
K + K E+ + + E KK KK+ + + + K KK
Sbjct: 61 KKVTVKFEKTESVKKESVAKKTVKKEAVSAEVFEASNKLFKNTSKLPKK 109
Score = 32.2 bits (73), Expect = 0.48
Identities = 30/115 (26%), Positives = 43/115 (37%), Gaps = 6/115 (5%)
Query: 4 KKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKE 63
E KK KK+ T++K+ K+ +E K K K S K +K + KK +
Sbjct: 1 MAETKKTTKKKTTEEKKPAAKKATTSKETAK------TKKTAKTTSTKAAKKAAKVKKTK 54
Query: 64 KNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKS 118
K +K K +K KK+ K +KE E E K K
Sbjct: 55 SVKTTTKKVTVKFEKTESVKKESVAKKTVKKEAVSAEVFEASNKLFKNTSKLPKK 109
>gnl|CDD|235322 PRK04950, PRK04950, ProP expression regulator; Provisional.
Length = 213
Score = 37.2 bits (87), Expect = 0.007
Identities = 14/58 (24%), Positives = 28/58 (48%)
Query: 52 EEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTK 109
EE K K ++ + + K R+ +K+K R ++K K K +K + + + E +
Sbjct: 104 EEAKAKVQAQRAEQQAKKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQHTPV 161
Score = 36.1 bits (84), Expect = 0.021
Identities = 15/61 (24%), Positives = 33/61 (54%)
Query: 126 KKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKAVRLT 185
+K+ EE K K ++ + + K R+ E+EK ++++K K + +K+ + R + + T
Sbjct: 100 RKQLEEAKAKVQAQRAEQQAKKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQHT 159
Query: 186 K 186
Sbjct: 160 P 160
Score = 35.7 bits (83), Expect = 0.025
Identities = 16/87 (18%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Query: 29 EEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKN 88
EEE + +K+ + K K ++++ E++ K K++ + + ++K K + +KK K
Sbjct: 92 EEEHVEHARKQLEEAKAKVQAQRAEQQAK--KREAAGEKEKAPRRERKPKPKAPRKKRKP 149
Query: 89 KNKSRKEEKKKEAEEEKKKTKNKEKNK 115
+ + + + ++ + K K
Sbjct: 150 RAQKPEPQHTPVSDISELTVGQAVKVK 176
Score = 34.9 bits (81), Expect = 0.049
Identities = 15/72 (20%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
Query: 99 KEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKK 158
+EA+ K + + E+ K E++K E+K K ++K K +++K E +
Sbjct: 104 EEAKA-KVQAQRAEQQAKKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQHTPVS 162
Query: 159 KKKKKKKKRTKK 170
+ + K
Sbjct: 163 DISELTVGQAVK 174
Score = 34.5 bits (80), Expect = 0.055
Identities = 13/63 (20%), Positives = 35/63 (55%)
Query: 127 KEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKAVRLTK 186
+EA+ K + + +++ K ++ E+E+ ++++K K K R K+K ++ + ++
Sbjct: 104 EEAKAKVQAQRAEQQAKKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQHTPVSD 163
Query: 187 LSA 189
+S
Sbjct: 164 ISE 166
Score = 34.5 bits (80), Expect = 0.058
Identities = 13/63 (20%), Positives = 30/63 (47%)
Query: 125 KKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKAVRL 184
+K+ E K K + ++ E+ K E+E+ ++++K K K +KK + + + +
Sbjct: 100 RKQLEEAKAKVQAQRAEQQAKKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQHT 159
Query: 185 TKL 187
Sbjct: 160 PVS 162
Score = 34.1 bits (79), Expect = 0.079
Identities = 15/79 (18%), Positives = 36/79 (45%), Gaps = 6/79 (7%)
Query: 5 KEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEK 64
+E K K + +R +++ K K E ++ K + +K K K+ +++ K + K + +
Sbjct: 104 EEAKAKVQAQRAEQQAK------KREAAGEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQ 157
Query: 65 NKNKNRKEEKKKKKKRRTK 83
+ + E + + K
Sbjct: 158 HTPVSDISELTVGQAVKVK 176
Score = 33.4 bits (77), Expect = 0.13
Identities = 16/70 (22%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 119 RKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKN 178
RK+ EE K + + ++ ++ KK + + K E K K K +KK++ + ++ E +
Sbjct: 100 RKQLEEAKAKVQAQRAEQQAKKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQHT 159
Query: 179 EKAVRLTKLS 188
+++L+
Sbjct: 160 -PVSDISELT 168
Score = 33.4 bits (77), Expect = 0.15
Identities = 10/66 (15%), Positives = 28/66 (42%)
Query: 51 KEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKN 110
K + + +R +++ K + ++EK +++R+ K K K + + +K +
Sbjct: 107 KAKVQAQRAEQQAKKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQHTPVSDISE 166
Query: 111 KEKNKN 116
+
Sbjct: 167 LTVGQA 172
Score = 32.6 bits (75), Expect = 0.23
Identities = 13/76 (17%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Query: 111 KEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKK 170
K K + + +++ +K++ A EK+K ++++ RK + + + +K + +
Sbjct: 107 KAKVQAQRAEQQAKKREAAGEKEKAPRRERKPKPKAPRK---KRKPRAQKPEPQHTPVSD 163
Query: 171 KEEEKRKNEKAVRLTK 186
E V+ K
Sbjct: 164 ISELTVGQAVKVKAGK 179
Score = 32.2 bits (74), Expect = 0.29
Identities = 11/65 (16%), Positives = 30/65 (46%)
Query: 53 EEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKE 112
EE K + + + + ++E +K+K ++++ RK+ K + + E + T +
Sbjct: 104 EEAKAKVQAQRAEQQAKKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQHTPVSD 163
Query: 113 KNKNK 117
++
Sbjct: 164 ISELT 168
Score = 31.4 bits (72), Expect = 0.57
Identities = 13/65 (20%), Positives = 33/65 (50%)
Query: 71 KEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAE 130
+E K K + +R +++ K + + ++EK E + K ++K K +++K E + ++
Sbjct: 104 EEAKAKVQAQRAEQQAKKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQHTPVSD 163
Query: 131 EKKKK 135
+
Sbjct: 164 ISELT 168
Score = 31.0 bits (71), Expect = 0.74
Identities = 8/47 (17%), Positives = 23/47 (48%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNK 48
K ++ +K+K R ++K K K +K + ++ + + + ++
Sbjct: 120 KKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQHTPVSDISE 166
Score = 30.7 bits (70), Expect = 1.1
Identities = 10/62 (16%), Positives = 30/62 (48%)
Query: 85 KEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNK 144
K K + + +++ KK +K+ + + K K + +++K A++ + + T + ++
Sbjct: 107 KAKVQAQRAEQQAKKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQHTPVSDISE 166
Query: 145 NK 146
Sbjct: 167 LT 168
Score = 29.5 bits (67), Expect = 2.3
Identities = 11/76 (14%), Positives = 27/76 (35%)
Query: 94 KEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEE 153
+E K K + ++ K + + K ++K + +K+ K + + +
Sbjct: 104 EEAKAKVQAQRAEQQAKKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQHTPVSD 163
Query: 154 EEKKKKKKKKKKKRTK 169
+ + K K K
Sbjct: 164 ISELTVGQAVKVKAGK 179
Score = 28.0 bits (63), Expect = 7.2
Identities = 9/62 (14%), Positives = 26/62 (41%)
Query: 28 KEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEK 87
+ + E++ KK+E + + R+E + K + +K++ + E + ++
Sbjct: 111 QAQRAEQQAKKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQHTPVSDISELTVG 170
Query: 88 NK 89
Sbjct: 171 QA 172
>gnl|CDD|237629 PRK14160, PRK14160, heat shock protein GrpE; Provisional.
Length = 211
Score = 37.4 bits (87), Expect = 0.007
Identities = 21/75 (28%), Positives = 39/75 (52%)
Query: 100 EAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKK 159
E E + K +N E++ K + +EE K + E+ + + +K+E ++ E + E+ K
Sbjct: 2 EKECKDAKHENMEEDCCKENENKEEDKGKEEDLEFEEIEKEEIIEDSEESNEVKIEELKD 61
Query: 160 KKKKKKKRTKKKEEE 174
+ K K+ KK E E
Sbjct: 62 ENNKLKEENKKLENE 76
Score = 35.1 bits (81), Expect = 0.038
Identities = 20/82 (24%), Positives = 40/82 (48%)
Query: 77 KKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKR 136
+K+ + K E + KE + KE ++ K++ E+ + + E+ E+ E + ++ K
Sbjct: 2 EKECKDAKHENMEEDCCKENENKEEDKGKEEDLEFEEIEKEEIIEDSEESNEVKIEELKD 61
Query: 137 TKKKEKNKNKSRKEEEEEEKKK 158
K K +NK + E E K +
Sbjct: 62 ENNKLKEENKKLENELEALKDR 83
Score = 31.6 bits (72), Expect = 0.51
Identities = 24/98 (24%), Positives = 46/98 (46%), Gaps = 2/98 (2%)
Query: 4 KKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKE 63
K E ++ + + KE++K K E EE +K+E + ++ + + E+ K K
Sbjct: 9 KHENMEEDCCKENENKEEDKGKEEDLEFEE--IEKEEIIEDSEESNEVKIEELKDENNKL 66
Query: 64 KNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEA 101
K +NK + E + K R + + N ++ K+KE
Sbjct: 67 KEENKKLENELEALKDRLLRTVAEYDNYRKRTAKEKEG 104
Score = 29.3 bits (66), Expect = 3.0
Identities = 17/71 (23%), Positives = 33/71 (46%)
Query: 6 EEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKN 65
E++ K K +++ K KEE++ K + + + + EE + ++ K+
Sbjct: 2 EKECKDAKHENMEEDCCKENENKEEDKGKEEDLEFEEIEKEEIIEDSEESNEVKIEELKD 61
Query: 66 KNKNRKEEKKK 76
+N KEE KK
Sbjct: 62 ENNKLKEENKK 72
Score = 28.2 bits (63), Expect = 6.6
Identities = 17/74 (22%), Positives = 37/74 (50%)
Query: 17 KKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKK 76
+K+ K+ EE+ K + KE++K + EE +K+ + + N+ + EE K
Sbjct: 2 EKECKDAKHENMEEDCCKENENKEEDKGKEEDLEFEEIEKEEIIEDSEESNEVKIEELKD 61
Query: 77 KKKRRTKKKEKNKN 90
+ + ++ +K +N
Sbjct: 62 ENNKLKEENKKLEN 75
Score = 27.8 bits (62), Expect = 9.6
Identities = 20/83 (24%), Positives = 43/83 (51%)
Query: 54 EKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEK 113
+K+ K +N ++ +E + K++ + K+++ + KEE +++EE + + K
Sbjct: 1 MEKECKDAKHENMEEDCCKENENKEEDKGKEEDLEFEEIEKEEIIEDSEESNEVKIEELK 60
Query: 114 NKNKSRKEEEEKKKEAEEKKKKR 136
++N KEE +K + E K R
Sbjct: 61 DENNKLKEENKKLENELEALKDR 83
>gnl|CDD|185628 PTZ00449, PTZ00449, 104 kDa microneme/rhoptry antigen; Provisional.
Length = 943
Score = 38.5 bits (89), Expect = 0.007
Identities = 34/135 (25%), Positives = 56/135 (41%), Gaps = 4/135 (2%)
Query: 57 KRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKN----KNKSRKEEKKKEAEEEKKKTKNKE 112
K+ KK K K +EE K + E + K KE ++ E E+ K+ + KE
Sbjct: 486 KKLIKKSKKKLAPIEEEDSDKHDEPPEGPEASGLPPKAPGDKEGEEGEHEDSKESDEPKE 545
Query: 113 KNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKE 172
K KE E KK K+ K +K +K ++ + K ++ KK K+ +
Sbjct: 546 GGKPGETKEGEVGKKPGPAKEHKPSKIPTLSKKPEFPKDPKHPKDPEEPKKPKRPRSAQR 605
Query: 173 EEKRKNEKAVRLTKL 187
+ K+ K L +
Sbjct: 606 PTRPKSPKLPELLDI 620
Score = 33.9 bits (77), Expect = 0.18
Identities = 36/166 (21%), Positives = 62/166 (37%), Gaps = 9/166 (5%)
Query: 12 KKRRTKKKEKNK-NKSRKEEEEEKRTKKKEKNKK----NKNKSRKEEEKKKRTKKKEKNK 66
K+ + E +K + KE + TK+ E KK ++K K K+ + + K
Sbjct: 527 KEGEEGEHEDSKESDEPKEGGKPGETKEGEVGKKPGPAKEHKPSKIPTLSKKPEFPKDPK 586
Query: 67 NKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKK 126
+ EE KK K+ R+ ++ K K E + K K E K+ R ++
Sbjct: 587 HPKDPEEPKKPKRPRSAQRP----TRPKSPKLPELLDIPKSPKRPESPKSPKRPPPPQRP 642
Query: 127 KEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKE 172
E + + K K + + + K+K K KE
Sbjct: 643 SSPERPEGPKIIKSPKPPKSPKPPFDPKFKEKFYDDYLDAAAKSKE 688
Score = 32.4 bits (73), Expect = 0.55
Identities = 27/133 (20%), Positives = 48/133 (36%)
Query: 33 EKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKS 92
+K ++ E ++ KE K TK+ E K +E K K KK +
Sbjct: 526 DKEGEEGEHEDSKESDEPKEGGKPGETKEGEVGKKPGPAKEHKPSKIPTLSKKPEFPKDP 585
Query: 93 RKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEE 152
+ + +E ++ K+ + + KS K E K+ + K ++ R
Sbjct: 586 KHPKDPEEPKKPKRPRSAQRPTRPKSPKLPELLDIPKSPKRPESPKSPKRPPPPQRPSSP 645
Query: 153 EEEKKKKKKKKKK 165
E + K K K
Sbjct: 646 ERPEGPKIIKSPK 658
>gnl|CDD|227355 COG5022, COG5022, Myosin heavy chain [Cytoskeleton].
Length = 1463
Score = 38.5 bits (90), Expect = 0.007
Identities = 31/158 (19%), Positives = 60/158 (37%), Gaps = 6/158 (3%)
Query: 30 EEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNK 89
E E +T+ + KK N EE + + K N+ E + K K +++ E
Sbjct: 921 ENLEFKTELIARLKKLLNNIDLEEG---PSIEYVKLPELNKLHEVESKLKETSEEYEDLL 977
Query: 90 NKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRK 149
KS +E + + KN +K + K+ ++ ++ K+ + E
Sbjct: 978 KKS--TILVREGNKANSELKNFKKELAELSKQYGALQESTKQLKELPVEVAELQSASKII 1035
Query: 150 EEEEEEKKKKKKKKKKKRTK-KKEEEKRKNEKAVRLTK 186
E E K +K K + + + KA++L +
Sbjct: 1036 SSESTELSILKPLQKLKGLLLLENNQLQARYKALKLRR 1073
Score = 37.8 bits (88), Expect = 0.013
Identities = 32/183 (17%), Positives = 65/183 (35%), Gaps = 13/183 (7%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKN----KSRKEEEEEKRTKKKEKNKKN---------KNK 48
K +K K++KK R T++ E + + + + + K+ +
Sbjct: 821 KLQKTIKREKKLRETEEVEFSLKAEVLIQKFGRSLKAKKRFSLLKKETIYLQSAQRVELA 880
Query: 49 SRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKT 108
R+ +E K K K N + E + + +++ + +N K E ++
Sbjct: 881 ERQLQELKIDVKSISSLKLVNLELESEIIELKKSLSSDLIENLEFKTELIARLKKLLNNI 940
Query: 109 KNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRT 168
+E + K E K E K K T ++ ++ K E K + K K+
Sbjct: 941 DLEEGPSIEYVKLPELNKLHEVESKLKETSEEYEDLLKKSTILVREGNKANSELKNFKKE 1000
Query: 169 KKK 171
+
Sbjct: 1001 LAE 1003
Score = 31.6 bits (72), Expect = 1.0
Identities = 23/173 (13%), Positives = 56/173 (32%), Gaps = 2/173 (1%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKK 61
++K +E ++ + KK + K E K KK E + +K +E K+ +
Sbjct: 963 ESKLKETSEEYEDLLKKSTILVREGNKANSELKNFKK-ELAELSKQYGALQESTKQLKEL 1021
Query: 62 KEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKE 121
+ K + K K + + + + + K + +N +
Sbjct: 1022 PVEVAELQ-SASKIISSESTELSILKPLQKLKGLLLLENNQLQARYKALKLRRENSLLDD 1080
Query: 122 EEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEE 174
++ + E+ E K K+ + + + K ++ +
Sbjct: 1081 KQLYQLESTENLLKTINVKDLEVTNRNLVKPANVLQFIVAQMIKLNLLQEISK 1133
>gnl|CDD|218597 pfam05466, BASP1, Brain acid soluble protein 1 (BASP1 protein).
This family consists of several brain acid soluble
protein 1 (BASP1) or neuronal axonal membrane protein
NAP-22. The BASP1 is a neuron enriched Ca(2+)-dependent
calmodulin-binding protein of unknown function.
Length = 233
Score = 37.1 bits (85), Expect = 0.009
Identities = 40/154 (25%), Positives = 70/154 (45%), Gaps = 5/154 (3%)
Query: 10 KKKKRRTKKKEKNKNKSRKEE---EEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNK 66
KKKK EK K+K +K E EE+ T K+ + + ++ + +E K+ K+
Sbjct: 6 KKKKGYNVNDEKAKDKDKKAEGAATEEEGTPKENEEAQAAAETTEVKEAKEEKPDKDAQD 65
Query: 67 NKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKK 126
N+ EEK+ +K+ K+E K + K E EA+ E K + E + +
Sbjct: 66 TANKTEEKEGEKEAAAAKEEAPKAEPEKTEGAAEAKAEPPKASDPE--QEPAAAPGPAAG 123
Query: 127 KEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKK 160
EA + + ++ E +E+ +EE + KK
Sbjct: 124 GEAPKASEASSQPAESAAPAKEEEKSKEEGEAKK 157
Score = 31.3 bits (70), Expect = 0.63
Identities = 42/180 (23%), Positives = 71/180 (39%), Gaps = 22/180 (12%)
Query: 3 NKKEEKKKKKKRRTKKKEKNKNKSRKEEEE--------EKRTKKKEKNKKNKNKSRKEEE 54
N +EK K K ++ + + + KE EE E + K+EK K+ + + E
Sbjct: 12 NVNDEKAKDKDKKAEGAATEEEGTPKENEEAQAAAETTEVKEAKEEKPDKDAQDTANKTE 71
Query: 55 KKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEE--------------KKKE 100
+K+ K+ K + K E +K + K E K ++E K E
Sbjct: 72 EKEGEKEAAAAKEEAPKAEPEKTEGAAEAKAEPPKASDPEQEPAAAPGPAAGGEAPKASE 131
Query: 101 AEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKK 160
A + ++ K + KS++E E KK EA + TK + S+ E K+
Sbjct: 132 ASSQPAESAAPAKEEEKSKEEGEAKKTEAPAAAAQETKSDAAPASDSKPSSSEAAPSSKE 191
Score = 30.2 bits (67), Expect = 1.7
Identities = 28/106 (26%), Positives = 46/106 (43%), Gaps = 1/106 (0%)
Query: 76 KKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKK 135
KKKK EK K+K +K E EEE +N+E E +E K+E +K +
Sbjct: 6 KKKKGYNVNDEKAKDKDKKAEGAA-TEEEGTPKENEEAQAAAETTEVKEAKEEKPDKDAQ 64
Query: 136 RTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKA 181
T K + K ++ +E+ K + +K + + + E K
Sbjct: 65 DTANKTEEKEGEKEAAAAKEEAPKAEPEKTEGAAEAKAEPPKASDP 110
Score = 29.8 bits (66), Expect = 2.1
Identities = 26/112 (23%), Positives = 49/112 (43%)
Query: 41 KNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKE 100
K K K +EK K KK + + K+ ++ + + ++++E+ K+
Sbjct: 3 KLSKKKKGYNVNDEKAKDKDKKAEGAATEEEGTPKENEEAQAAAETTEVKEAKEEKPDKD 62
Query: 101 AEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEE 152
A++ KT+ KE K + +EE K E E+ + K E K ++E
Sbjct: 63 AQDTANKTEEKEGEKEAAAAKEEAPKAEPEKTEGAAEAKAEPPKASDPEQEP 114
Score = 29.4 bits (65), Expect = 2.9
Identities = 28/111 (25%), Positives = 50/111 (45%), Gaps = 1/111 (0%)
Query: 60 KKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTK-NKEKNKNKS 118
K +K K N +EK K K ++ + + + KE ++ +A E + K KE+ +K
Sbjct: 3 KLSKKKKGYNVNDEKAKDKDKKAEGAATEEEGTPKENEEAQAAAETTEVKEAKEEKPDKD 62
Query: 119 RKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTK 169
++ K +E E +K+ K+E K + K E E K + K +
Sbjct: 63 AQDTANKTEEKEGEKEAAAAKEEAPKAEPEKTEGAAEAKAEPPKASDPEQE 113
>gnl|CDD|227606 COG5281, COG5281, Phage-related minor tail protein [Function
unknown].
Length = 833
Score = 38.1 bits (88), Expect = 0.009
Identities = 31/193 (16%), Positives = 64/193 (33%), Gaps = 12/193 (6%)
Query: 3 NKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKK 62
N + + +++ + +EE + K K +R+EE K K K
Sbjct: 392 NYAAADQAANQEGALNAREDEAEVLSTQEERRDILKNLLADAEKRTARQEELNKALAKAK 451
Query: 63 EKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEE 122
K K + + + +SR + E +E+ K + + +
Sbjct: 452 ILQA--------DKAAKAYQEDILQREAQSRGKTAAAERSQEQMTAALKALLAFQQQIAD 503
Query: 123 EEKKKEAEEKKKKRTKKKEKN----KNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKN 178
KE +K K E+ K ++++ + +E+K + KK+ + E
Sbjct: 504 LSGAKEKASDQKSLLWKAEEQYALLKEEAKQRQLQEQKALLEHKKETLEYTSQLAELLDQ 563
Query: 179 EKAVRLTKLSAFG 191
+ A G
Sbjct: 564 QADRFELSAQAAG 576
Score = 34.6 bits (79), Expect = 0.091
Identities = 24/192 (12%), Positives = 70/192 (36%), Gaps = 14/192 (7%)
Query: 4 KKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEE--EKKKRTKK 61
+++++ + + K +R+EE + K K K+ +E+ +++ +++
Sbjct: 416 LSTQEERRDILKNLLADAEKRTARQEELNKALAKAKILQADKAAKAYQEDILQREAQSRG 475
Query: 62 KEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKE 121
K +++++ K +++ KE ++K K + + KE
Sbjct: 476 KTAAAERSQEQMTAALKALLAFQQQIADLSG-----AKEKASDQKSLLWKAEEQYALLKE 530
Query: 122 EEEKKKEAEEKKKKRTKKKE-------KNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEE 174
E ++++ E+K KK+ + + E + +K++ +E
Sbjct: 531 EAKQRQLQEQKALLEHKKETLEYTSQLAELLDQQADRFELSAQAAGSQKERGSDLYREAL 590
Query: 175 KRKNEKAVRLTK 186
+ +
Sbjct: 591 AQNAAALNKALN 602
>gnl|CDD|235638 PRK05896, PRK05896, DNA polymerase III subunits gamma and tau;
Validated.
Length = 605
Score = 37.9 bits (88), Expect = 0.010
Identities = 29/130 (22%), Positives = 57/130 (43%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKK 61
++ + KK + K EK + + +K +E NK + + + K KK
Sbjct: 362 NANPDKLENKKIEISIKPEKKTINNSQIITTKKINIVEESNKNSVHFDTLYKTKIFYHKK 421
Query: 62 KEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKE 121
K NK + +K++ ++ KK + K+ + E ++K K+ E +KN +K
Sbjct: 422 KINQNNKEQDIKKEELLEKEFVKKSEKIPKNDELLDNLELAKQKFFNKDIELSKNMLQKF 481
Query: 122 EEEKKKEAEE 131
+ K +E+ E
Sbjct: 482 NKFKNEESAE 491
Score = 36.0 bits (83), Expect = 0.037
Identities = 27/112 (24%), Positives = 39/112 (34%)
Query: 53 EEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKE 112
K + + + K K KK E + +K + KK +E
Sbjct: 341 NRLKASVNQVFEFEIYLYKIINANPDKLENKKIEISIKPEKKTINNSQIITTKKINIVEE 400
Query: 113 KNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKK 164
NKN + K K KKK KE++ K E+E KK +K K
Sbjct: 401 SNKNSVHFDTLYKTKIFYHKKKINQNNKEQDIKKEELLEKEFVKKSEKIPKN 452
Score = 35.6 bits (82), Expect = 0.049
Identities = 33/160 (20%), Positives = 60/160 (37%), Gaps = 7/160 (4%)
Query: 19 KEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKK 78
+ K + E E K +K +++K E K KK N +
Sbjct: 340 INRLKASVNQVFEFEIYLYKIINANPDKLENKKIEISIKPEKKTINN-------SQIITT 392
Query: 79 KRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTK 138
K+ +E NKN + K KK N+ + +KEE +K+ ++ +K
Sbjct: 393 KKINIVEESNKNSVHFDTLYKTKIFYHKKKINQNNKEQDIKKEELLEKEFVKKSEKIPKN 452
Query: 139 KKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKN 178
+ + + K++ + + K +K K K EE +N
Sbjct: 453 DELLDNLELAKQKFFNKDIELSKNMLQKFNKFKNEESAEN 492
Score = 34.4 bits (79), Expect = 0.11
Identities = 38/154 (24%), Positives = 58/154 (37%), Gaps = 2/154 (1%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKK 61
N+ + + K N + + E +K + KK N S+ KK
Sbjct: 340 INRLKASVNQVFEFEIYLYKIINANPDKLENKKIEISIKPEKKTINNSQIITTKKI-NIV 398
Query: 62 KEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKE 121
+E NKN + K K KKK NK + +K++ E+E K K+++ KN +
Sbjct: 399 EESNKNSVHFDTLYKTKIFYHKKKINQNNKEQDIKKEELLEKEFVK-KSEKIPKNDELLD 457
Query: 122 EEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEE 155
E K+ K K K K EE E
Sbjct: 458 NLELAKQKFFNKDIELSKNMLQKFNKFKNEESAE 491
>gnl|CDD|237178 PRK12705, PRK12705, hypothetical protein; Provisional.
Length = 508
Score = 37.4 bits (87), Expect = 0.011
Identities = 20/104 (19%), Positives = 59/104 (56%)
Query: 76 KKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKK 135
KK++R K+ E+ +++KE ++K + + + +N+ R+E +++E + ++++
Sbjct: 26 KKRQRLAKEAERILQEAQKEAEEKLEAALLEAKELLLRERNQQRQEARREREELQREEER 85
Query: 136 RTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNE 179
+K+E+ ++ K + E + ++++K R + EE +++ +
Sbjct: 86 LVQKEEQLDARAEKLDNLENQLEEREKALSARELELEELEKQLD 129
Score = 37.0 bits (86), Expect = 0.017
Identities = 32/169 (18%), Positives = 76/169 (44%), Gaps = 14/169 (8%)
Query: 10 KKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKN 69
KK++R K+ E+ +++KE EE+ E +E R + +++ + +
Sbjct: 26 KKRQRLAKEAERILQEAQKEAEEKLEAALLEA-----------KELLLRERNQQRQEARR 74
Query: 70 RKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEA 129
+EE +++++R +K+E + EK E + ++ + + +E E++
Sbjct: 75 EREELQREEERLVQKEE---QLDARAEKLDNLENQLEEREKALSARELELEELEKQLDNE 131
Query: 130 EEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKN 178
+ T ++ + + E EE+K ++ KK ++ + E K +N
Sbjct: 132 LYRVAGLTPEQARKLLLKLLDAELEEEKAQRVKKIEEEADLEAERKAQN 180
Score = 32.0 bits (73), Expect = 0.58
Identities = 21/130 (16%), Positives = 60/130 (46%), Gaps = 4/130 (3%)
Query: 6 EEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKN 65
+E ++K + + ++ + R ++ +E R +++E ++ + +KEE+ R +K +
Sbjct: 44 KEAEEKLEAALLEAKELLLRERNQQRQEARREREELQREEERLVQKEEQLDARAEKLDNL 103
Query: 66 KNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEK 125
+N+ + EK ++ E + + + + + + K K + EEEK
Sbjct: 104 ENQLEEREKALS----ARELELEELEKQLDNELYRVAGLTPEQARKLLLKLLDAELEEEK 159
Query: 126 KKEAEEKKKK 135
+ ++ +++
Sbjct: 160 AQRVKKIEEE 169
Score = 31.6 bits (72), Expect = 0.86
Identities = 23/124 (18%), Positives = 56/124 (45%), Gaps = 4/124 (3%)
Query: 6 EEKKKKKKRRTKKKEKNKNKSRKEE--EEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKE 63
+ K+ R + +++ + + +EE EE+R +KE+ + + E + ++K
Sbjct: 54 LLEAKELLLRERNQQRQEARREREELQREEERLVQKEEQLDARAEKLDNLENQLEEREKA 113
Query: 64 KNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEE--KKKEAEEEKKKTKNKEKNKNKSRKE 121
+ + EE +K+ + + ++ K +AE E++K + +K + ++ E
Sbjct: 114 LSARELELEELEKQLDNELYRVAGLTPEQARKLLLKLLDAELEEEKAQRVKKIEEEADLE 173
Query: 122 EEEK 125
E K
Sbjct: 174 AERK 177
>gnl|CDD|227492 COG5163, NOP7, Protein required for biogenesis of the 60S ribosomal
subunit [Translation, ribosomal structure and
biogenesis].
Length = 591
Score = 37.4 bits (86), Expect = 0.012
Identities = 29/72 (40%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Query: 104 EKKKTKNKEKNKNKSRKEEEEKKKEAE---EKKKKRTKKKEKNKNKSRKEEEEEEKKKKK 160
E K NK KNK + EEEE+KK K+K+ KK K N ++E+ E KKKKK
Sbjct: 520 EADKDVNKSKNKKRKVDEEEEEKKLKMIMMSNKQKKLYKKMKYSNAKKEEQAENLKKKKK 579
Query: 161 KKKKKKRTKKKE 172
+ K+K+ K+
Sbjct: 580 QIAKQKKLDSKK 591
Score = 37.4 bits (86), Expect = 0.013
Identities = 21/69 (30%), Positives = 42/69 (60%)
Query: 19 KEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKK 78
K+ NK+K++K + +E+ +KK K NK +K +K K + K++ + +N K++KK+
Sbjct: 523 KDVNKSKNKKRKVDEEEEEKKLKMIMMSNKQKKLYKKMKYSNAKKEEQAENLKKKKKQIA 582
Query: 79 KRRTKKKEK 87
K++ +K
Sbjct: 583 KQKKLDSKK 591
Score = 36.6 bits (84), Expect = 0.027
Identities = 35/129 (27%), Positives = 68/129 (52%), Gaps = 4/129 (3%)
Query: 46 KNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEK 105
+ + EE+ R + + ++ +E+ ++ + +K+ + + + K + EA+++
Sbjct: 467 ETQRHSEEDLVNRFED-VRYEHVAGEEDDDDDEELQAQKELELEAQGIKYSETSEADKDV 525
Query: 106 KKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKK 165
K+KNK K K +EEEEKK + K+ K +K K + K+EE+ E KKKKK+
Sbjct: 526 NKSKNK---KRKVDEEEEEKKLKMIMMSNKQKKLYKKMKYSNAKKEEQAENLKKKKKQIA 582
Query: 166 KRTKKKEEE 174
K+ K ++
Sbjct: 583 KQKKLDSKK 591
Score = 36.2 bits (83), Expect = 0.029
Identities = 34/130 (26%), Positives = 58/130 (44%), Gaps = 13/130 (10%)
Query: 20 EKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKK 79
+ + EE+ R + + ++E+ + K+ E E + K
Sbjct: 464 TMEETQRHSEEDLVNRFEDVRYEHVAGEEDDDDDEELQAQKELEL--------EAQGIKY 515
Query: 80 RRTKKKEKNKNKSRKEEKKKEAEEEKKKTK-----NKEKNKNKSRKEEEEKKKEAEEKKK 134
T + +K+ NKS+ +++K + EEE+KK K NK+K K K KK+E E K
Sbjct: 516 SETSEADKDVNKSKNKKRKVDEEEEEKKLKMIMMSNKQKKLYKKMKYSNAKKEEQAENLK 575
Query: 135 KRTKKKEKNK 144
K+ K+ K K
Sbjct: 576 KKKKQIAKQK 585
Score = 36.2 bits (83), Expect = 0.029
Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 16 TKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKN-KNRKEEK 74
K K+KNK RK +EEE+ K K NK K ++ K KK+E+ +N K +K++
Sbjct: 522 DKDVNKSKNKKRKVDEEEEEKKLKMIMMSNKQKKLYKKMKYSNAKKEEQAENLKKKKKQI 581
Query: 75 KKKKKRRTKK 84
K+KK +KK
Sbjct: 582 AKQKKLDSKK 591
Score = 33.9 bits (77), Expect = 0.18
Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 10/98 (10%)
Query: 93 RKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAE------EKKKKRTKKKEKNKNK 146
+E+ E+ + + E++ + + + +K+ E E + + K K+KNK
Sbjct: 472 SEEDLVNRFEDVRYEHVAGEEDDDDDEELQAQKELELEAQGIKYSETSEADKDVNKSKNK 531
Query: 147 SRKEEEEEEKKKKKK----KKKKKRTKKKEEEKRKNEK 180
RK +EEEE+KK K K+KK KK + K E+
Sbjct: 532 KRKVDEEEEEKKLKMIMMSNKQKKLYKKMKYSNAKKEE 569
Score = 33.5 bits (76), Expect = 0.19
Identities = 27/132 (20%), Positives = 59/132 (44%), Gaps = 7/132 (5%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKK 61
+ ++ ++ R + ++ ++++E+ +KE + + E + +
Sbjct: 467 ETQRHSEEDLVNRFEDVRYEHVAGEEDDDDDEELQAQKELELEAQGIKYSETSEADKDVN 526
Query: 62 KEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKE 121
K KNK + EE+++KK K NK +K KK + KK+ + K +K+
Sbjct: 527 KSKNKKRKVDEEEEEKK----LKMIMMSNKQKKLYKKMKYSNAKKEEQA---ENLKKKKK 579
Query: 122 EEEKKKEAEEKK 133
+ K+K+ + KK
Sbjct: 580 QIAKQKKLDSKK 591
>gnl|CDD|113514 pfam04747, DUF612, Protein of unknown function, DUF612. This
family includes several uncharacterized proteins from
Caenorhabditis elegans.
Length = 517
Score = 37.3 bits (85), Expect = 0.013
Identities = 41/165 (24%), Positives = 80/165 (48%)
Query: 8 KKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKN 67
++ ++ + KK EK K + + ++ E K K K R E E KKR ++E++K
Sbjct: 62 EQPQQVEKVKKSEKKKAQKQIAKDHEAEQKVNAKKAAEKEARRAEAEAKKRAAQEEEHKQ 121
Query: 68 KNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKK 127
++E+ +K++ + + K +K+EK +AE+ +K K K+ + +EE KK
Sbjct: 122 WKAEQERIQKEQEKKEADLKKLQAEKKKEKAVKAEKAEKAEKTKKASTPAPVEEEIVVKK 181
Query: 128 EAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKE 172
A ++ + + N + E+ ++ KK KK K+ + E
Sbjct: 182 VANDRSAAPAPEPKTPTNTPAEPAEQVQEITGKKNKKNKKKSESE 226
Score = 32.7 bits (73), Expect = 0.41
Identities = 30/104 (28%), Positives = 62/104 (59%)
Query: 77 KKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKR 136
++ ++ +K +K++ K +++ K+ E E+K K K R E E KK+ A+E++ K+
Sbjct: 62 EQPQQVEKVKKSEKKKAQKQIAKDHEAEQKVNAKKAAEKEARRAEAEAKKRAAQEEEHKQ 121
Query: 137 TKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEK 180
K +++ K ++++E + KK + +KKK+K K ++ EK + K
Sbjct: 122 WKAEQERIQKEQEKKEADLKKLQAEKKKEKAVKAEKAEKAEKTK 165
Score = 31.6 bits (70), Expect = 0.75
Identities = 33/129 (25%), Positives = 65/129 (50%)
Query: 47 NKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKK 106
N RKE ++ + K +K EKKK +K+ K E + + K+ +KEA +
Sbjct: 48 NDQRKEAFASLELTEQPQQVEKVKKSEKKKAQKQIAKDHEAEQKVNAKKAAEKEARRAEA 107
Query: 107 KTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKK 166
+ K + + + ++ + E+++ +E++KK K+ K +++ + EK +K +K KK
Sbjct: 108 EAKKRAAQEEEHKQWKAEQERIQKEQEKKEADLKKLQAEKKKEKAVKAEKAEKAEKTKKA 167
Query: 167 RTKKKEEEK 175
T EE+
Sbjct: 168 STPAPVEEE 176
Score = 31.2 bits (69), Expect = 1.3
Identities = 28/93 (30%), Positives = 56/93 (60%)
Query: 94 KEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEE 153
K+ +KK+A+++ K E+ N + E+E ++ E KK+ +++E + K+ +E +
Sbjct: 71 KKSEKKKAQKQIAKDHEAEQKVNAKKAAEKEARRAEAEAKKRAAQEEEHKQWKAEQERIQ 130
Query: 154 EEKKKKKKKKKKKRTKKKEEEKRKNEKAVRLTK 186
+E++KK+ KK + +KK+E+ K EKA + K
Sbjct: 131 KEQEKKEADLKKLQAEKKKEKAVKAEKAEKAEK 163
Score = 29.3 bits (64), Expect = 5.0
Identities = 39/136 (28%), Positives = 66/136 (48%), Gaps = 2/136 (1%)
Query: 24 NKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTK 83
N RKE ++ + + KS K++ +K+ K E + N K K +K+ R
Sbjct: 48 NDQRKEAFASLELTEQPQQVEKVKKSEKKKAQKQIAKDHEAEQKVNAK--KAAEKEARRA 105
Query: 84 KKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKN 143
+ E K +++EE K+ E+++ K +EK + +K + EKKKE K +K K ++
Sbjct: 106 EAEAKKRAAQEEEHKQWKAEQERIQKEQEKKEADLKKLQAEKKKEKAVKAEKAEKAEKTK 165
Query: 144 KNKSRKEEEEEEKKKK 159
K + EEE KK
Sbjct: 166 KASTPAPVEEEIVVKK 181
Score = 28.5 bits (62), Expect = 8.1
Identities = 45/172 (26%), Positives = 75/172 (43%), Gaps = 1/172 (0%)
Query: 4 KKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKE 63
KK E + + ++ + K EE ++ +++KNKKNK KS E E
Sbjct: 221 KKSESEATAAPASVEQVVEQPKVVTEEPHQQAAPQEKKNKKNKRKSESENVPAASETPVE 280
Query: 64 KNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEE 123
+ +KK ++ KKK +++ K +E + EA + KK T + + +E
Sbjct: 281 PVVETTPPASENQKKNKKDKKKSESE-KVVEEPVQAEAPKSKKPTADDNMDFLDFVTAKE 339
Query: 124 EKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEK 175
E K E E ++ +N ++ E+ + KKK KK KK E EK
Sbjct: 340 EPKDEPAETPAAPVEEVVENVVENVVEKSTTPPATENKKKNKKDKKKSESEK 391
>gnl|CDD|225177 COG2268, COG2268, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 548
Score = 37.5 bits (87), Expect = 0.013
Identities = 23/146 (15%), Positives = 59/146 (40%)
Query: 15 RTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEK 74
R + + ++ E E EK T+ K + E +++ K + + +
Sbjct: 213 RRRIAQVLQDAEIAENEAEKETEIAIAEANRDAKLVELEVEQQPAGKTAEQTREVKIILA 272
Query: 75 KKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKK 134
+ + + K E + + E ++A +E+K +E K+ + E + E +K+
Sbjct: 273 ETEAEVAAWKAETRREAEQAEILAEQAIQEEKAQAEQEVQHAKALEAREMRVGLIERQKE 332
Query: 135 KRTKKKEKNKNKSRKEEEEEEKKKKK 160
+ +E++ + + + +E+ K
Sbjct: 333 TELEPQERSYFINAAQRQAQEEAKAA 358
Score = 36.0 bits (83), Expect = 0.035
Identities = 24/158 (15%), Positives = 59/158 (37%), Gaps = 12/158 (7%)
Query: 11 KKKRRTKKKEKNKN-KSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKN 69
+K+ E N++ K + E E++ K + + E E + K E +
Sbjct: 231 EKETEIAIAEANRDAKLVELEVEQQPAGKTAEQTREVKIILAETEAEVAAWKAETRREAE 290
Query: 70 RKEEKKKKKKRRTKKKEKNKNKSRKEE----------KKKEAEEEKKKTKNKEKNKNKSR 119
+ E ++ + K + + + + K ++++ E + + ++ N R
Sbjct: 291 QAEILAEQAIQEEKAQAEQEVQHAKALEAREMRVGLIERQKETELEPQERSYFINA-AQR 349
Query: 120 KEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKK 157
+ +EE K A + + + + EE E ++
Sbjct: 350 QAQEEAKAAANIAEAIGAQAEAAVETARETEEAERAEQ 387
Score = 34.4 bits (79), Expect = 0.11
Identities = 22/167 (13%), Positives = 68/167 (40%), Gaps = 1/167 (0%)
Query: 14 RRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNK-NRKE 72
T K+ ++ N + + + + +N++ KE E ++ + ++
Sbjct: 195 NDTSKENQDPNNYLDALGRRRIAQVLQDAEIAENEAEKETEIAIAEANRDAKLVELEVEQ 254
Query: 73 EKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEK 132
+ K +T++ + ++ E +AE ++ + + + ++E+ + ++E +
Sbjct: 255 QPAGKTAEQTREVKIILAETEAEVAAWKAETRREAEQAEILAEQAIQEEKAQAEQEVQHA 314
Query: 133 KKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNE 179
K ++ + +KE E E +++ +R ++E + N
Sbjct: 315 KALEAREMRVGLIERQKETELEPQERSYFINAAQRQAQEEAKAAANI 361
Score = 30.6 bits (69), Expect = 1.7
Identities = 21/186 (11%), Positives = 73/186 (39%), Gaps = 9/186 (4%)
Query: 8 KKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKN 67
+ + + K + + + + + E+ ++K + ++ ++ E ++ R E+ K
Sbjct: 273 ETEAEVAAWKAETRREAEQAEILAEQAIQEEKAQAEQEVQHAKALEAREMRVGLIERQKE 332
Query: 68 KNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEE---EE 124
+ +++ +++ + + K+ + + + + + + R E+
Sbjct: 333 TELEPQERSYFINAAQRQAQEEAKAAANIAEAIGAQAEAAVETARETEEAERAEQAALVA 392
Query: 125 KKKEAEEKKKKRTKKKEKNKNKSRKEEE----EEEKKKKKKKKKKKRTKKKEE--EKRKN 178
+ AE+++ + + E K ++ + E E ++K K + + + E + +
Sbjct: 393 AAEAAEQEQVEIAVRAEAAKAEAEAQAAEIKAEAEAIREKGKAEAEAKRALAEAIQVLGD 452
Query: 179 EKAVRL 184
A L
Sbjct: 453 AAAAEL 458
Score = 30.2 bits (68), Expect = 2.3
Identities = 20/150 (13%), Positives = 54/150 (36%), Gaps = 9/150 (6%)
Query: 41 KNKKNKNKSRKEEEKKKRTKKKEK----NKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEE 96
K ++ N +++ + + ++ E + R K + + + +
Sbjct: 199 KENQDPNNYLDALGRRRIAQVLQDAEIAENEAEKETEIAIAEANRDAKLVELEVEQQPAG 258
Query: 97 KKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKE-----AEEKKKKRTKKKEKNKNKSRKEE 151
K E E K + + + + K E ++ E AE+ ++ + E+ ++ E
Sbjct: 259 KTAEQTREVKIILAETEAEVAAWKAETRREAEQAEILAEQAIQEEKAQAEQEVQHAKALE 318
Query: 152 EEEEKKKKKKKKKKKRTKKKEEEKRKNEKA 181
E + +++K+ + +E N
Sbjct: 319 AREMRVGLIERQKETELEPQERSYFINAAQ 348
>gnl|CDD|217503 pfam03344, Daxx, Daxx Family. The Daxx protein (also known as the
Fas-binding protein) is thought to play a role in
apoptosis, but precise role played by Daxx remains to be
determined. Daxx forms a complex with Axin.
Length = 715
Score = 37.6 bits (87), Expect = 0.013
Identities = 29/166 (17%), Positives = 70/166 (42%), Gaps = 12/166 (7%)
Query: 21 KNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKR 80
K K EEEE+R K+++ ++ SR + K + E +++ E+++ +
Sbjct: 390 KYAMKQDDTEEEERR--KRQERERQGTSSRSSDPSKASSTSGESPSMASQESEEEESVEE 447
Query: 81 RTKKKEKNK---NKSRKEEKKKEAEEEKKKTKNKEKNK-------NKSRKEEEEKKKEAE 130
+++E+ + +S +EE + E EEE+ + N + + + +E EE +
Sbjct: 448 EEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEMEGSSEGDGDGEEPEEDAERRN 507
Query: 131 EKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKR 176
+ ++ E + + + E +++ + + EE
Sbjct: 508 SEMAGISRMSEGQQPRGSSVQPESPQEEPLQPESMDAESVGEESDE 553
Score = 36.0 bits (83), Expect = 0.041
Identities = 24/131 (18%), Positives = 61/131 (46%), Gaps = 4/131 (3%)
Query: 49 SRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKT 108
SR EE K K++ + +EE++K+++R + + K
Sbjct: 382 SRLEEVISKYAMKQDDTE----EEERRKRQERERQGTSSRSSDPSKASSTSGESPSMASQ 437
Query: 109 KNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRT 168
+++E+ + +EEEE+++E E++ ++ + E+ + + + EE+ + +
Sbjct: 438 ESEEEESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEMEGSSEGDGDGE 497
Query: 169 KKKEEEKRKNE 179
+ +E+ +R+N
Sbjct: 498 EPEEDAERRNS 508
Score = 33.0 bits (75), Expect = 0.35
Identities = 22/140 (15%), Positives = 62/140 (44%), Gaps = 12/140 (8%)
Query: 43 KKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAE 102
K K EE++ R K++E+ + K T ++ S ++ +E E
Sbjct: 389 SKYAMKQDDTEEEE-RRKRQERERQGTSSRSSDPSKASST----SGESPSMASQESEEEE 443
Query: 103 EEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNK-------NKSRKEEEEEE 155
+++ + +E+ + + ++ EEE+ ++ EE+++ + + + +E EE+
Sbjct: 444 SVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEMEGSSEGDGDGEEPEEDA 503
Query: 156 KKKKKKKKKKKRTKKKEEEK 175
+++ + R + ++ +
Sbjct: 504 ERRNSEMAGISRMSEGQQPR 523
Score = 29.5 bits (66), Expect = 3.6
Identities = 23/117 (19%), Positives = 61/117 (52%), Gaps = 2/117 (1%)
Query: 64 KNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEE 123
K K E+++++KR+ ++++ ++S K E ++E + +S +EEE
Sbjct: 390 KYAMKQDDTEEEERRKRQERERQGTSSRSSDPSKASSTSGESPSMASQESEEEESVEEEE 449
Query: 124 EKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEK 180
E+ E EE+++++ ++E+ +++ +EE E + +++ + EE ++ +
Sbjct: 450 EE--EEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEMEGSSEGDGDGEEPEEDAE 504
>gnl|CDD|237867 PRK14953, PRK14953, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 486
Score = 37.1 bits (86), Expect = 0.013
Identities = 32/111 (28%), Positives = 51/111 (45%), Gaps = 5/111 (4%)
Query: 75 KKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNK---EKNKNKSRKEEEEKKKEAEE 131
K+ K+ TK++ + K + ++E + + K + K KN KEEE K E
Sbjct: 365 KEGSKQETKEQPEKKEEEKEELDIDKIILQIIKNEGKIISAILKNAEIKEEEGKITIKVE 424
Query: 132 KKKKRTKKKEKNKNKSR--KEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEK 180
K ++ T E K E EE KK+K+K+K++ +K E K K
Sbjct: 425 KSEEDTLDLEIKSIKKYFPFIEFEEVKKEKEKEKERPEFVEKVLELFKGSK 475
Score = 35.6 bits (82), Expect = 0.043
Identities = 33/131 (25%), Positives = 55/131 (41%), Gaps = 10/131 (7%)
Query: 15 RTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEK 74
K+E + +KEEE+E+ K + KN+ + K + KE+ + + K
Sbjct: 366 EGSKQETKEQPEKKEEEKEELDIDKIILQIIKNEGKIISAILKNAEIKEE---EGKITIK 422
Query: 75 KKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKK 134
+K + T E K + E +++K+ K K R E EK E + K
Sbjct: 423 VEKSEEDTLDLEIKSIKKYFPFIEFEEVKKEKE-------KEKERPEFVEKVLELFKGSK 475
Query: 135 KRTKKKEKNKN 145
T KK+K K+
Sbjct: 476 IITYKKKKGKD 486
Score = 34.0 bits (78), Expect = 0.15
Identities = 28/125 (22%), Positives = 53/125 (42%), Gaps = 3/125 (2%)
Query: 43 KKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAE 102
K+ + KE+ +KK +K+E + +K + K + K + + + K + + + E
Sbjct: 365 KEGSKQETKEQPEKKEEEKEELDIDKIILQIIKNEGKIISAILKNAEIKEEEGKITIKVE 424
Query: 103 EEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKK 162
+ ++ T + E K E E KK+K +K+ + E + K KK
Sbjct: 425 KSEEDTLDLEIKSIKKYFPFIE---FEEVKKEKEKEKERPEFVEKVLELFKGSKIITYKK 481
Query: 163 KKKKR 167
KK K
Sbjct: 482 KKGKD 486
>gnl|CDD|240274 PTZ00112, PTZ00112, origin recognition complex 1 protein;
Provisional.
Length = 1164
Score = 37.3 bits (86), Expect = 0.014
Identities = 36/174 (20%), Positives = 63/174 (36%), Gaps = 7/174 (4%)
Query: 5 KEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEK 64
K K K + K+K+KN K R +++ KR +K K + + R K KK EK
Sbjct: 215 KNNTNDKNKEKNKEKDKNIKKDRDGDKQTKRNSEKSKVQNSHFDVRILRSYTKENKKDEK 274
Query: 65 NKNKNRKEEKKKKKKRRTKKKEK-------NKNKSRKEEKKKEAEEEKKKTKNKEKNKNK 117
N + K+K + +K+ K K+ + + N + + +
Sbjct: 275 NVVSGIRSSVLLKRKSQCLRKDSYVYSNHQKKAKTGDPKNIIHRNNGSSNSNNDDTSSSN 334
Query: 118 SRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKK 171
+ KK+T K N K+ K + + +K + T K
Sbjct: 335 HLGSNRISNRNPSSPYKKQTTTKHTNNTKNNKYNKTKTTQKFNHPLRHHATINK 388
Score = 36.9 bits (85), Expect = 0.020
Identities = 34/180 (18%), Positives = 63/180 (35%), Gaps = 5/180 (2%)
Query: 3 NKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKK 62
+K ++ R T + N N KE+ +EK K+ +K R E+ K +
Sbjct: 198 TTCYDKMRRSPRNTSTIKNNTNDKNKEKNKEKDKNIKKDRDGDKQTKRNSEKSKVQNSHF 257
Query: 63 EKN-----KNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNK 117
+ +N+K+EK R+ K K++ +++ + +KK KN
Sbjct: 258 DVRILRSYTKENKKDEKNVVSGIRSSVLLKRKSQCLRKDSYVYSNHQKKAKTGDPKNIIH 317
Query: 118 SRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRK 177
+ + N+N S +++ K K K K K +K
Sbjct: 318 RNNGSSNSNNDDTSSSNHLGSNRISNRNPSSPYKKQTTTKHTNNTKNNKYNKTKTTQKFN 377
Score = 35.7 bits (82), Expect = 0.044
Identities = 32/178 (17%), Positives = 60/178 (33%), Gaps = 1/178 (0%)
Query: 4 KKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKN-KNKSRKEEEKKKRTKKK 62
KK+ K+ +R +K K +N TK+ +K++KN + R K++++
Sbjct: 234 KKDRDGDKQTKRNSEKSKVQNSHFDVRILRSYTKENKKDEKNVVSGIRSSVLLKRKSQCL 293
Query: 63 EKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEE 122
K+ +KK K +N S + + +N + K++
Sbjct: 294 RKDSYVYSNHQKKAKTGDPKNIIHRNNGSSNSNNDDTSSSNHLGSNRISNRNPSSPYKKQ 353
Query: 123 EEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEK 180
K K K K K K K+ ++ + EK + K
Sbjct: 354 TTTKHTNNTKNNKYNKTKTTQKFNHPLRHHATINKRSSMLPMSEQKGRGASEKSEYIK 411
Score = 35.0 bits (80), Expect = 0.077
Identities = 28/128 (21%), Positives = 50/128 (39%)
Query: 20 EKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKK 79
K+ K KE + + + +NK S K+ +K+ R K
Sbjct: 156 SKHSPKVIKENQSTHVNISSDNSPRNKEISNKQLKKQTNVTHTTCYDKMRRSPRNTSTIK 215
Query: 80 RRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKK 139
T K K KNK + + KK+ + +K+ +N EK+K ++ + + ++ KK K
Sbjct: 216 NNTNDKNKEKNKEKDKNIKKDRDGDKQTKRNSEKSKVQNSHFDVRILRSYTKENKKDEKN 275
Query: 140 KEKNKNKS 147
S
Sbjct: 276 VVSGIRSS 283
Score = 34.2 bits (78), Expect = 0.14
Identities = 27/120 (22%), Positives = 45/120 (37%), Gaps = 7/120 (5%)
Query: 4 KKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKE 63
K K K+ + T + N R +E K+ KK+ + + + K
Sbjct: 157 KHSPKVIKENQSTHVNISSDNSPRNKEISNKQLKKQTNVTHTTCYDKMRRSPRNTSTIK- 215
Query: 64 KNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEE------KKKTKNKEKNKNK 117
N N KE+ K+K K K ++ +K R EK K + TK +K++
Sbjct: 216 NNTNDKNKEKNKEKDKNIKKDRDGDKQTKRNSEKSKVQNSHFDVRILRSYTKENKKDEKN 275
Score = 30.0 bits (67), Expect = 3.0
Identities = 27/140 (19%), Positives = 58/140 (41%), Gaps = 2/140 (1%)
Query: 42 NKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEA 101
N + S K ++ + T + N R +E K+ ++ + +
Sbjct: 152 NSLSSKHSPKVIKENQSTHVNISSDNSPRNKEISNKQLKKQTNVTHTTCYDKMRRSPRNT 211
Query: 102 EEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKK-KEKNKNKSRKEEEEEEKKKKK 160
K T +K K KNK + + +K ++ +++ K+ ++K K +N + + K+ KK
Sbjct: 212 STIKNNTNDKNKEKNKEKDKNIKKDRDGDKQTKRNSEKSKVQNSHFDVRILRSYTKENKK 271
Query: 161 KKKK-KKRTKKKEEEKRKNE 179
+K + KRK++
Sbjct: 272 DEKNVVSGIRSSVLLKRKSQ 291
>gnl|CDD|218115 pfam04502, DUF572, Family of unknown function (DUF572). Family of
eukaryotic proteins with undetermined function.
Length = 321
Score = 36.6 bits (85), Expect = 0.017
Identities = 29/193 (15%), Positives = 74/193 (38%), Gaps = 1/193 (0%)
Query: 4 KKEEKKKKKKRRTKKKEKN-KNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKK 62
+KE +++ KK E + R+ E E+ + KE + + + ++K
Sbjct: 122 EKEREEELAGDAMKKLENRTADSKREMEVLERLEELKELQSRRADVDVNSMLEALFRREK 181
Query: 63 EKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEE 122
++ + + ++E K + E+++ ++ E+ + + E+ K + + ++
Sbjct: 182 KEEEEEEEEDEALIKSLSFGPETEEDRRRADDEDSEDDEEDNDNTPSPKSGSSSPAKPTS 241
Query: 123 EEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKAV 182
KK A+ + + K +KN K + +KK + T + ++
Sbjct: 242 ILKKSAAKRSEAPSSSKAKKNSRGIPKPRDALSSLVVRKKAAPESTSQSPSSAEPTSESP 301
Query: 183 RLTKLSAFGISGY 195
+ S+ G
Sbjct: 302 QTAGNSSLSSLGD 314
Score = 34.7 bits (80), Expect = 0.067
Identities = 29/165 (17%), Positives = 65/165 (39%)
Query: 28 KEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEK 87
K +EE++ +KE+ ++ + K+ E + K+E + +E K+ + +R
Sbjct: 112 KLDEEQEERVEKEREEELAGDAMKKLENRTADSKREMEVLERLEELKELQSRRADVDVNS 171
Query: 88 NKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKS 147
+ EKK+E EEE++ + EE+ ++ + E+ + KS
Sbjct: 172 MLEALFRREKKEEEEEEEEDEALIKSLSFGPETEEDRRRADDEDSEDDEEDNDNTPSPKS 231
Query: 148 RKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKAVRLTKLSAFGI 192
+ KK K+ + +KN + + + + +
Sbjct: 232 GSSSPAKPTSILKKSAAKRSEAPSSSKAKKNSRGIPKPRDALSSL 276
Score = 32.8 bits (75), Expect = 0.32
Identities = 27/153 (17%), Positives = 56/153 (36%), Gaps = 8/153 (5%)
Query: 20 EKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNK-NRKEEKKKKK 78
E+ K R+EE KK E + + R+ E ++ + KE + + +
Sbjct: 118 EERVEKEREEELAGDAMKKLEN--RTADSKREMEVLERLEELKELQSRRADVDVNSMLEA 175
Query: 79 KRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTK 138
R +KKE+ +EE++ EA + + + + +E+ + E + K
Sbjct: 176 LFRREKKEEE-----EEEEEDEALIKSLSFGPETEEDRRRADDEDSEDDEEDNDNTPSPK 230
Query: 139 KKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKK 171
+ K ++ K+ + K K
Sbjct: 231 SGSSSPAKPTSILKKSAAKRSEAPSSSKAKKNS 263
>gnl|CDD|216187 pfam00913, Trypan_glycop, Trypanosome variant surface glycoprotein
(A-type). The trypanosome parasite expresses these
proteins to evade the immune response. This family
includes a variety of surface proteins such as
Trypanosoma brucei VSGs such as expression site
associated gene (ESAG) 6 and 7.
Length = 370
Score = 36.7 bits (85), Expect = 0.017
Identities = 23/89 (25%), Positives = 36/89 (40%)
Query: 84 KKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKN 143
K K + K + K T+ KE K +++ ++A EK KK +
Sbjct: 263 HAAKAKPTATAAAYKNDTTTLKASTELKEALKRLLLNKKDTDDEDAAEKIKKLFGDDDAE 322
Query: 144 KNKSRKEEEEEEKKKKKKKKKKKRTKKKE 172
K K E+ + E+ KK K+TK E
Sbjct: 323 KIKKLWEKIDNEQIPKKIAGTTKKTKLGE 351
>gnl|CDD|220252 pfam09468, RNase_H2-Ydr279, Ydr279p protein family (RNase H2
complex component). RNases H are enzymes that
specifically hydrolyse RNA when annealed to a
complementary DNA and are present in all living
organisms. In yeast RNase H2 is composed of a complex of
three proteins (Rnh2Ap, Ydr279p and Ylr154p), this
family represents the homologues of Ydr279p. It is not
known whether non yeast proteins in this family fulfil
the same function.
Length = 287
Score = 36.5 bits (85), Expect = 0.018
Identities = 20/86 (23%), Positives = 35/86 (40%), Gaps = 8/86 (9%)
Query: 86 EKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKN 145
+ K E + K K +K K ++ ++ E + AE+K+K + + K+K
Sbjct: 205 PDLYKELLKSLLIPEFKPLDKYLKESKKKKRETEEDVEAAESRAEKKRKSKEEIKKKKPK 264
Query: 146 KSRKEEEEEEKKKKKKKKKKKRTKKK 171
+S K K KK + KK
Sbjct: 265 ES--------KGVKALKKVVAKGMKK 282
Score = 35.4 bits (82), Expect = 0.044
Identities = 21/70 (30%), Positives = 35/70 (50%)
Query: 71 KEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAE 130
K + K K +++K K R+ E+ EA E + + K K K + K +K +E K +A
Sbjct: 213 KSLLIPEFKPLDKYLKESKKKKRETEEDVEAAESRAEKKRKSKEEIKKKKPKESKGVKAL 272
Query: 131 EKKKKRTKKK 140
+K + KK
Sbjct: 273 KKVVAKGMKK 282
Score = 34.2 bits (79), Expect = 0.086
Identities = 21/78 (26%), Positives = 36/78 (46%)
Query: 29 EEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKN 88
+ ++ K + +E KKK+ + +E + + EKK+K K KKK+
Sbjct: 205 PDLYKELLKSLLIPEFKPLDKYLKESKKKKRETEEDVEAAESRAEKKRKSKEEIKKKKPK 264
Query: 89 KNKSRKEEKKKEAEEEKK 106
++K K KK A+ KK
Sbjct: 265 ESKGVKALKKVVAKGMKK 282
Score = 33.8 bits (78), Expect = 0.12
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Query: 105 KKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKK 164
K + K +K KE ++KK+E EE + + EK RK +EE +KKK K+ K
Sbjct: 213 KSLLIPEFKPLDKYLKESKKKKRETEEDVEAAESRAEKK----RKSKEEIKKKKPKESKG 268
Query: 165 KKRTKKKEEEKRKN 178
K KK + K
Sbjct: 269 VKALKKVVAKGMKK 282
Score = 32.7 bits (75), Expect = 0.26
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 6/84 (7%)
Query: 51 KEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKN 110
+ K+ K K+ KKK+R +++ +SR E+K+K EE KK
Sbjct: 205 PDLYKELLKSLLIPEFKPLDKYLKESKKKKRETEEDVEAAESRAEKKRKSKEEIKK---- 260
Query: 111 KEKNKNKSRKEEEEKKKEAEEKKK 134
K +S+ + KK A+ KK
Sbjct: 261 --KKPKESKGVKALKKVVAKGMKK 282
Score = 32.7 bits (75), Expect = 0.30
Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
Query: 20 EKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKK 79
+ K + + K++K K R+ EE + + + + K K+++E KKKK K
Sbjct: 205 PDLYKELLKSLLIPEFKPLDKYLKESKKKKRETEEDVEAAESRAEKKRKSKEEIKKKKPK 264
Query: 80 RRTKKKEKNKNKSRKEEKKK 99
K K K + KK
Sbjct: 265 --ESKGVKALKKVVAKGMKK 282
Score = 31.1 bits (71), Expect = 1.0
Identities = 19/68 (27%), Positives = 27/68 (39%), Gaps = 4/68 (5%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEE----KRTKKKEKNKKNKNKSRKEEEKKK 57
E K K + KK+K + + E E KR K+E KK +S+ + KK
Sbjct: 215 LLIPEFKPLDKYLKESKKKKRETEEDVEAAESRAEKKRKSKEEIKKKKPKESKGVKALKK 274
Query: 58 RTKKKEKN 65
K K
Sbjct: 275 VVAKGMKK 282
Score = 28.8 bits (65), Expect = 5.5
Identities = 17/83 (20%), Positives = 37/83 (44%)
Query: 1 CKNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTK 60
C + K+ + E +E ++K+ + +E + ++++ K+ + K+ K
Sbjct: 200 CSYLPPDLYKELLKSLLIPEFKPLDKYLKESKKKKRETEEDVEAAESRAEKKRKSKEEIK 259
Query: 61 KKEKNKNKNRKEEKKKKKKRRTK 83
KK+ ++K K KK K K
Sbjct: 260 KKKPKESKGVKALKKVVAKGMKK 282
>gnl|CDD|220431 pfam09831, DUF2058, Uncharacterized protein conserved in bacteria
(DUF2058). This domain, found in various prokaryotic
proteins, has no known function.
Length = 177
Score = 35.7 bits (83), Expect = 0.018
Identities = 18/56 (32%), Positives = 33/56 (58%)
Query: 71 KEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKK 126
K +K KK+KR+ +K+ + +E K+ AEE K + +++ N+ R+ E E+K
Sbjct: 16 KAKKAKKEKRKQRKQARKGADDGDDELKQAAEEAKAEKAERDRELNRQRQAEAEQK 71
Score = 29.9 bits (68), Expect = 1.4
Identities = 17/57 (29%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKS-RKEEEEEKRTKKKEKNKKNKNKSRKEEEKKK 57
K KK +K+K+K+R+ +K + K+ EE + +K E++++ N+ R+ E ++K
Sbjct: 16 KAKKAKKEKRKQRKQARKGADDGDDELKQAAEEAKAEKAERDRE-LNRQRQAEAEQK 71
Score = 29.9 bits (68), Expect = 1.7
Identities = 20/80 (25%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 95 EEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEE 154
++K K+A++EK+K + K+ K ++E K+ E K +K + +E N+ + + E++
Sbjct: 14 KKKAKKAKKEKRK-QRKQARKGADDGDDELKQAAEEAKAEKAERDRELNRQRQAEAEQKA 72
Query: 155 EKKKKKKKKKKKRTKKKEEE 174
+ K+ ++ R +K+ E
Sbjct: 73 IVAQIKQLIEQNRIDRKDGE 92
Score = 29.9 bits (68), Expect = 1.8
Identities = 10/55 (18%), Positives = 30/55 (54%)
Query: 125 KKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNE 179
KK + E++K+++ +K + ++ EE K +K ++ ++ ++++ E +
Sbjct: 18 KKAKKEKRKQRKQARKGADDGDDELKQAAEEAKAEKAERDRELNRQRQAEAEQKA 72
Score = 29.5 bits (67), Expect = 2.2
Identities = 19/81 (23%), Positives = 42/81 (51%), Gaps = 7/81 (8%)
Query: 39 KEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKK 98
K+K KK K + RK+ ++ ++ ++ K EE K +K ++++ N+ R+ E +
Sbjct: 14 KKKAKKAKKEKRKQRKQARKGADDGDDELKQAAEEAKAEK----AERDRELNRQRQAEAE 69
Query: 99 KEAEEEKKK---TKNKEKNKN 116
++A + K +N+ K+
Sbjct: 70 QKAIVAQIKQLIEQNRIDRKD 90
Score = 28.0 bits (63), Expect = 7.0
Identities = 11/59 (18%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 22 NKNKSRKEEEEEKRTKKKEKNKKNKNKS-RKEEEKKKRTKKKEKNKNKNRKEEKKKKKK 79
+K K++K ++E+++ +K+ + + K+ ++ + +K E+++ NR+ + + ++K
Sbjct: 13 DKKKAKKAKKEKRKQRKQARKGADDGDDELKQAAEEAKAEKAERDRELNRQRQAEAEQK 71
>gnl|CDD|178867 PRK00106, PRK00106, hypothetical protein; Provisional.
Length = 535
Score = 36.8 bits (85), Expect = 0.021
Identities = 37/158 (23%), Positives = 75/158 (47%), Gaps = 19/158 (12%)
Query: 5 KEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEK 64
K E+ + ++T K+E K E ++ +K + + + KS ++E K+ ++ E+
Sbjct: 50 KAERDAEHIKKTAKRESKALKKELLLEAKEEARKYREEIEQEFKSERQELKQIESRLTER 109
Query: 65 NKNKNRKEEKKKKKKRRTKKKE-----KNKNKSRKEEKKKEAEEEKKKTKNK-------- 111
+ +RK+E K++ + KE K+K+ +EE+ ++ EE+KK +
Sbjct: 110 ATSLDRKDENLSSKEKTLESKEQSLTDKSKHIDEREEQVEKLEEQKKAELERVAALSQAE 169
Query: 112 ------EKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKN 143
+ +NK E + +EAE + K R+ K K+
Sbjct: 170 AREIILAETENKLTHEIATRIREAEREVKDRSDKMAKD 207
Score = 32.5 bits (74), Expect = 0.37
Identities = 39/156 (25%), Positives = 79/156 (50%), Gaps = 11/156 (7%)
Query: 23 KNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRK--EEKKKKKKR 80
K KS KE E +++ + K+ ++ E K+T K+E K E K++ +K
Sbjct: 25 KMKSAKEAAELTLLNAEQEAVNLRGKAERDAEHIKKTAKRESKALKKELLLEAKEEARKY 84
Query: 81 RTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKK 140
R + +++ K++ R+E K+ E+ ++ T K++N S KE+ + KE
Sbjct: 85 REEIEQEFKSE-RQELKQIESRLTERATSLDRKDENLSSKEKTLESKE--------QSLT 135
Query: 141 EKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKR 176
+K+K+ +EE+ E+ +++KK + ++ + E R
Sbjct: 136 DKSKHIDEREEQVEKLEEQKKAELERVAALSQAEAR 171
Score = 32.1 bits (73), Expect = 0.59
Identities = 34/157 (21%), Positives = 70/157 (44%), Gaps = 10/157 (6%)
Query: 18 KKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKK 77
K E++ +K + E + KKE + K ++RK E+ + + K E+++
Sbjct: 50 KAERDAEHIKKTAKRESKALKKELLLEAKEEARKYREEIE----------QEFKSERQEL 99
Query: 78 KKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRT 137
K+ ++ E+ + RK+E E+ + + +K+K E EE+ ++ EE+KK
Sbjct: 100 KQIESRLTERATSLDRKDENLSSKEKTLESKEQSLTDKSKHIDEREEQVEKLEEQKKAEL 159
Query: 138 KKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEE 174
++ +E E + K + R ++ E E
Sbjct: 160 ERVAALSQAEAREIILAETENKLTHEIATRIREAERE 196
Score = 31.8 bits (72), Expect = 0.70
Identities = 36/141 (25%), Positives = 69/141 (48%), Gaps = 12/141 (8%)
Query: 46 KNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEK 105
K KS KE + +++ N K E+ + ++T K+E +K+ K+E EA+EE
Sbjct: 25 KMKSAKEAAELTLLNAEQEAVNLRGKAERDAEHIKKTAKRE---SKALKKELLLEAKEEA 81
Query: 106 KKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKK 165
+K + + E+E K E +E K+ ++ E+ + RK+E K+K + K++
Sbjct: 82 RKYR---------EEIEQEFKSERQELKQIESRLTERATSLDRKDENLSSKEKTLESKEQ 132
Query: 166 KRTKKKEEEKRKNEKAVRLTK 186
T K + + E+ +L +
Sbjct: 133 SLTDKSKHIDEREEQVEKLEE 153
>gnl|CDD|150884 pfam10278, Med19, Mediator of RNA pol II transcription subunit 19.
Med19 represents a family of conserved proteins which
are members of the multi-protein co-activator Mediator
complex. Mediator is required for activation of RNA
polymerase II transcription by DNA binding
transactivators.
Length = 178
Score = 35.6 bits (82), Expect = 0.021
Identities = 22/70 (31%), Positives = 37/70 (52%)
Query: 106 KKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKK 165
K+K+K+K +K + E K + K+K +K E+++E+KKKKK+KKK
Sbjct: 105 HIQPPKKKHKHKHKKHRTQDPLPEETPSDSEGLKGHEKKHKKKKHEDDKERKKKKKEKKK 164
Query: 166 KRTKKKEEEK 175
K+ + E
Sbjct: 165 KKKRHSPEHP 174
Score = 34.8 bits (80), Expect = 0.036
Identities = 19/63 (30%), Positives = 37/63 (58%)
Query: 32 EEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNK 91
+ + K K K+KK++ + EE ++ + ++ K++K++ + K+R+ KKKEK K K
Sbjct: 107 QPPKKKHKHKHKKHRTQDPLPEETPSDSEGLKGHEKKHKKKKHEDDKERKKKKKEKKKKK 166
Query: 92 SRK 94
R
Sbjct: 167 KRH 169
Score = 33.3 bits (76), Expect = 0.12
Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 120 KEEEEKKKEAEEKKKKRTK--KKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRK 177
+ KKK + KK RT+ E+ + S + E+K KKKK + K KKK++EK+K
Sbjct: 105 HIQPPKKKHKHKHKKHRTQDPLPEETPSDSEGLKGHEKKHKKKKHEDDKERKKKKKEKKK 164
Query: 178 NEK 180
+K
Sbjct: 165 KKK 167
Score = 32.9 bits (75), Expect = 0.19
Identities = 18/73 (24%), Positives = 34/73 (46%)
Query: 14 RRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEE 73
R + K K ++ + E+ + + E+K K+ K ++ + K +K+E
Sbjct: 102 RLMHIQPPKKKHKHKHKKHRTQDPLPEETPSDSEGLKGHEKKHKKKKHEDDKERKKKKKE 161
Query: 74 KKKKKKRRTKKKE 86
KKKKKKR + +
Sbjct: 162 KKKKKKRHSPEHP 174
Score = 32.1 bits (73), Expect = 0.26
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 31 EEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKN 90
E+ + + KK+K+K +K + ++ + + EKK KKK+ KE+ K
Sbjct: 99 EQYRLMHIQPPKKKHKHKHKKHRTQDPLPEETPSDSEGLKGHEKKHKKKKHEDDKERKKK 158
Query: 91 KSRKEEKKKE 100
K KE+KKK+
Sbjct: 159 K--KEKKKKK 166
Score = 31.7 bits (72), Expect = 0.34
Identities = 18/65 (27%), Positives = 34/65 (52%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKK 61
K K + K KK + + E+ + S + EK+ KKK+ + K +K+E+KKK+ +
Sbjct: 110 KKKHKHKHKKHRTQDPLPEETPSDSEGLKGHEKKHKKKKHEDDKERKKKKKEKKKKKKRH 169
Query: 62 KEKNK 66
++
Sbjct: 170 SPEHP 174
Score = 31.7 bits (72), Expect = 0.43
Identities = 23/64 (35%), Positives = 40/64 (62%), Gaps = 4/64 (6%)
Query: 102 EEEKKKTKNKEKNKNKSRK---EEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKK 158
+ KKK K+K K K++++ EE E + +K+ KKK+ +K RK++++E+KKK
Sbjct: 107 QPPKKKHKHKHK-KHRTQDPLPEETPSDSEGLKGHEKKHKKKKHEDDKERKKKKKEKKKK 165
Query: 159 KKKK 162
KK+
Sbjct: 166 KKRH 169
Score = 31.0 bits (70), Expect = 0.64
Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 4 KKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKE 63
+ KKK K + KK ++ + EE ++ + ++K K + E++K+++ KKKE
Sbjct: 105 HIQPPKKKHKHKHKK---HRTQDPLPEETPSDSEGLKGHEKKHKKKKHEDDKERKKKKKE 161
Query: 64 KNKNKNRK 71
K K K R
Sbjct: 162 KKKKKKRH 169
Score = 29.4 bits (66), Expect = 2.1
Identities = 19/65 (29%), Positives = 32/65 (49%)
Query: 90 NKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRK 149
K K + KK ++ + ++ E++ KKK+ E+ K+++ KKKEK K K R
Sbjct: 110 KKKHKHKHKKHRTQDPLPEETPSDSEGLKGHEKKHKKKKHEDDKERKKKKKEKKKKKKRH 169
Query: 150 EEEEE 154
E
Sbjct: 170 SPEHP 174
Score = 27.5 bits (61), Expect = 9.1
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 62 KEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKK-KTKNKEKNKNKSRK 120
K+K+K+K++K + T + K+ KKK+ E++K+ K K KEK K K R
Sbjct: 110 KKKHKHKHKKHRTQDPLPEETPSDSEGLKGHEKKHKKKKHEDDKERKKKKKEKKKKKKRH 169
Query: 121 EEEEK 125
E
Sbjct: 170 SPEHP 174
>gnl|CDD|220303 pfam09592, DUF2031, Protein of unknown function (DUF2031). This
protein is expressed in Plasmodium; its function is
unknown. It may be the product of gene family pyst-b.
Length = 228
Score = 35.8 bits (83), Expect = 0.022
Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 9/118 (7%)
Query: 17 KKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKK 76
KK K N +K+TKK N+ RKE E+ KK+ NK +
Sbjct: 91 IKKHKENNTLPDLNNVDKKTKKL------INELRKELEE---VKKELDNKRNGELAIQPI 141
Query: 77 KKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKK 134
+ KR KK E + ++ K+ E EE +T+ E + + K+ + +K + +KK
Sbjct: 142 QDKRIIKKDENSSVSEHEDFKQLENEENFLETEYNEITSSNNYKKLKINRKLKKAEKK 199
Score = 28.1 bits (63), Expect = 7.7
Identities = 31/116 (26%), Positives = 51/116 (43%), Gaps = 22/116 (18%)
Query: 74 KKKKKKRRTKKKEKNKNKSRKE---EKKKEAEEEKKKTKNK----------------EKN 114
KK K+ T N +K K+ E +KE EE KK+ NK +K+
Sbjct: 91 IKKHKENNTLPDLNNVDKKTKKLINELRKELEEVKKELDNKRNGELAIQPIQDKRIIKKD 150
Query: 115 KNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKK 170
+N S E E+ K + + ++ + E N+ S ++ + +K KK +KK K
Sbjct: 151 ENSSVSEHEDFK---QLENEENFLETEYNEITSSNNYKKLKINRKLKKAEKKLIKS 203
Score = 27.7 bits (62), Expect = 9.9
Identities = 26/109 (23%), Positives = 46/109 (42%), Gaps = 5/109 (4%)
Query: 8 KKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKN 67
KK K+ T N +K K+ E R + +E K+ NK E + K+ K+
Sbjct: 91 IKKHKENNTLPDLNNVDKKTKKLINELRKELEEVKKELDNKRNGELAIQPIQDKRIIKKD 150
Query: 68 KN-----RKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNK 111
+N ++ K+ + + + E N+ S KK + + KK + K
Sbjct: 151 ENSSVSEHEDFKQLENEENFLETEYNEITSSNNYKKLKINRKLKKAEKK 199
>gnl|CDD|218188 pfam04641, Rtf2, Replication termination factor 2. It is vital for
effective cell-replication that replication is not
stalled at any point by, for instance, damaged bases.
Rtf2 stabilizes the replication fork stalled at the
site-specific replication barrier RTS1 by preventing
replication restart until completion of DNA synthesis by
a converging replication fork initiated at a flanking
origin. The RTS1 element terminates replication forks
that are moving in the cen2-distal direction while
allowing forks moving in the cen2-proximal direction to
pass through the region. Rtf2 contains a C2HC2 motif
related to the C3HC4 RING-finger motif, and would appear
to fold up, creating a RING finger-like structure but
forming only one functional Zn2+ ion-binding site.
Length = 254
Score = 36.2 bits (84), Expect = 0.022
Identities = 21/90 (23%), Positives = 37/90 (41%)
Query: 70 RKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEA 129
+EE + K R +++ K K K +K++ KK + EA
Sbjct: 165 TEEEVELLKARLEEERAKKKKKKKKKKTKKNNATGSSAEATVSSAVPTELSSGAGQVGEA 224
Query: 130 EEKKKKRTKKKEKNKNKSRKEEEEEEKKKK 159
++ KKKR+ + K++ K KK+K
Sbjct: 225 KKLKKKRSIAPDNEKSEVYKSLFTSHKKEK 254
Score = 35.4 bits (82), Expect = 0.040
Identities = 16/83 (19%), Positives = 29/83 (34%)
Query: 88 NKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKS 147
N + E K EEE+ K K K+K K + EA T+
Sbjct: 163 NPTEEEVELLKARLEEERAKKKKKKKKKKTKKNNATGSSAEATVSSAVPTELSSGAGQVG 222
Query: 148 RKEEEEEEKKKKKKKKKKKRTKK 170
++ ++++ +K + K
Sbjct: 223 EAKKLKKKRSIAPDNEKSEVYKS 245
Score = 34.6 bits (80), Expect = 0.063
Identities = 21/85 (24%), Positives = 30/85 (35%), Gaps = 10/85 (11%)
Query: 5 KEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEK 64
+EE + K R +++ K K K KKK+ K N S E +
Sbjct: 166 EEEVELLKARLEEERAKKKKKK----------KKKKTKKNNATGSSAEATVSSAVPTELS 215
Query: 65 NKNKNRKEEKKKKKKRRTKKKEKNK 89
+ E KK KKKR +
Sbjct: 216 SGAGQVGEAKKLKKKRSIAPDNEKS 240
Score = 33.1 bits (76), Expect = 0.23
Identities = 14/63 (22%), Positives = 26/63 (41%)
Query: 4 KKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKE 63
++ KKKKKK++ K K+ N S E + + + K+ +KK+
Sbjct: 178 EERAKKKKKKKKKKTKKNNATGSSAEATVSSAVPTELSSGAGQVGEAKKLKKKRSIAPDN 237
Query: 64 KNK 66
+
Sbjct: 238 EKS 240
Score = 31.9 bits (73), Expect = 0.47
Identities = 22/96 (22%), Positives = 37/96 (38%), Gaps = 5/96 (5%)
Query: 47 NKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKK 106
N + +E E K ++E+ K K KKKKKK+ K + E
Sbjct: 163 NPTEEEVELLKARLEEERAKKK-----KKKKKKKTKKNNATGSSAEATVSSAVPTELSSG 217
Query: 107 KTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEK 142
+ E K K ++ +++E K T K++
Sbjct: 218 AGQVGEAKKLKKKRSIAPDNEKSEVYKSLFTSHKKE 253
Score = 31.5 bits (72), Expect = 0.58
Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 5/67 (7%)
Query: 122 EEEKKKEAEEKKKKRTKKKEKNKNKSRKEE-----EEEEKKKKKKKKKKKRTKKKEEEKR 176
EEE+ K+ ++KKKK+TKK + + E + + KK KK+
Sbjct: 177 EEERAKKKKKKKKKKTKKNNATGSSAEATVSSAVPTELSSGAGQVGEAKKLKKKRSIAPD 236
Query: 177 KNEKAVR 183
+ V
Sbjct: 237 NEKSEVY 243
Score = 31.5 bits (72), Expect = 0.68
Identities = 20/89 (22%), Positives = 38/89 (42%)
Query: 61 KKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRK 120
++E K R EE++ KKK++ KKK+ KN + + + + K
Sbjct: 166 EEEVELLKARLEEERAKKKKKKKKKKTKKNNATGSSAEATVSSAVPTELSSGAGQVGEAK 225
Query: 121 EEEEKKKEAEEKKKKRTKKKEKNKNKSRK 149
+ ++K+ A + +K K +K K
Sbjct: 226 KLKKKRSIAPDNEKSEVYKSLFTSHKKEK 254
Score = 31.2 bits (71), Expect = 0.73
Identities = 16/68 (23%), Positives = 30/68 (44%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKK 61
K + EE++ KKK++ KKK+ KN + E + + E +K K+ +
Sbjct: 173 KARLEEERAKKKKKKKKKKTKKNNATGSSAEATVSSAVPTELSSGAGQVGEAKKLKKKRS 232
Query: 62 KEKNKNKN 69
+ K+
Sbjct: 233 IAPDNEKS 240
Score = 31.2 bits (71), Expect = 0.94
Identities = 19/52 (36%), Positives = 27/52 (51%)
Query: 139 KKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKAVRLTKLSAF 190
++E K+R EEE +KKKKKKKKK K+ + T+LS+
Sbjct: 166 EEEVELLKARLEEERAKKKKKKKKKKTKKNNATGSSAEATVSSAVPTELSSG 217
Score = 30.4 bits (69), Expect = 1.5
Identities = 17/85 (20%), Positives = 30/85 (35%), Gaps = 11/85 (12%)
Query: 27 RKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEK--NKNKNRKEEKKKKKKRRTKK 84
+EE E + + +E + ++KKK+ KKK K N + E
Sbjct: 165 TEEEVELLKARLEE---------ERAKKKKKKKKKKTKKNNATGSSAEATVSSAVPTELS 215
Query: 85 KEKNKNKSRKEEKKKEAEEEKKKTK 109
+ K+ KKK + +
Sbjct: 216 SGAGQVGEAKKLKKKRSIAPDNEKS 240
>gnl|CDD|220383 pfam09756, DDRGK, DDRGK domain. This is a family of proteins of
approximately 300 residues, found in plants and
vertebrates. They contain a highly conserved DDRGK
motif.
Length = 189
Score = 35.4 bits (82), Expect = 0.023
Identities = 26/88 (29%), Positives = 54/88 (61%)
Query: 69 NRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKE 128
K+ K ++K+ +++ + + + R+E KK E + E ++ + +E + + +K+EEE++KE
Sbjct: 4 GAKKRAKLEEKQARRQQREAEEEEREERKKLEEKREGERKEEEELEEEREKKKEEEERKE 63
Query: 129 AEEKKKKRTKKKEKNKNKSRKEEEEEEK 156
EE+ +K ++ EK K+ EEE +K
Sbjct: 64 REEQARKEQEEYEKLKSSFVVEEEGTDK 91
Score = 31.6 bits (72), Expect = 0.50
Identities = 24/81 (29%), Positives = 53/81 (65%)
Query: 51 KEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKN 110
K+ KKR K +EK + ++E ++++++ R K +EK + + ++EE+ +E E+KK+ +
Sbjct: 1 KKIGAKKRAKLEEKQARRQQREAEEEEREERKKLEEKREGERKEEEELEEEREKKKEEEE 60
Query: 111 KEKNKNKSRKEEEEKKKEAEE 131
+++ + ++RKE+EE +K
Sbjct: 61 RKEREEQARKEQEEYEKLKSS 81
Score = 29.3 bits (66), Expect = 2.7
Identities = 22/70 (31%), Positives = 46/70 (65%)
Query: 8 KKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKN 67
KK K+R K +EK + ++E EEE+R ++K+ +K + + ++EEE ++ +KK++ +
Sbjct: 1 KKIGAKKRAKLEEKQARRQQREAEEEEREERKKLEEKREGERKEEEELEEEREKKKEEEE 60
Query: 68 KNRKEEKKKK 77
+ +EE+ +K
Sbjct: 61 RKEREEQARK 70
Score = 28.9 bits (65), Expect = 3.9
Identities = 18/62 (29%), Positives = 42/62 (67%)
Query: 4 KKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKE 63
K EEK+ ++++R ++E+ + + + EE+ E K++E+ ++ + K ++EEE+K+R ++
Sbjct: 10 KLEEKQARRQQREAEEEEREERKKLEEKREGERKEEEELEEEREKKKEEEERKEREEQAR 69
Query: 64 KN 65
K
Sbjct: 70 KE 71
>gnl|CDD|114629 pfam05917, DUF874, Helicobacter pylori protein of unknown function
(DUF874). This family consists of several hypothetical
proteins specific to Helicobacter pylori. The function
of this family is unknown.
Length = 417
Score = 36.4 bits (83), Expect = 0.024
Identities = 25/85 (29%), Positives = 50/85 (58%)
Query: 95 EEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEE 154
++KK E + KK+ +N NKS E E+++++ E++K+K K+ + N K E+E+
Sbjct: 124 QDKKIELAQAKKEAENARDRANKSGIELEQEEQKTEQEKQKTEKEGIELANSQIKAEQEK 183
Query: 155 EKKKKKKKKKKKRTKKKEEEKRKNE 179
+K +++K+K ++ +K KN
Sbjct: 184 QKTEQEKQKTEQEKQKTSNIANKNA 208
Score = 36.0 bits (82), Expect = 0.032
Identities = 27/105 (25%), Positives = 64/105 (60%)
Query: 70 RKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEA 129
+ E + KK+ + NK+ E+++++ E+EK+KT+ + S+ + E++K++
Sbjct: 127 KIELAQAKKEAENARDRANKSGIELEQEEQKTEQEKQKTEKEGIELANSQIKAEQEKQKT 186
Query: 130 EEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEE 174
E++K+K ++K+K N + K E E++K+K + +K+ K++++
Sbjct: 187 EQEKQKTEQEKQKTSNIANKNAIELEQEKQKTENEKQDLIKEQKD 231
Score = 34.5 bits (78), Expect = 0.085
Identities = 28/110 (25%), Positives = 55/110 (50%), Gaps = 4/110 (3%)
Query: 5 KEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEK 64
K+ + + K+ + NKS E E+E++ ++EK K K E K E+
Sbjct: 126 KKIELAQAKKEAENARDRANKSGIELEQEEQKTEQEKQKTEKEGI----ELANSQIKAEQ 181
Query: 65 NKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKN 114
K K +E++K +++++ NKN E++K++ E EK+ ++K+
Sbjct: 182 EKQKTEQEKQKTEQEKQKTSNIANKNAIELEQEKQKTENEKQDLIKEQKD 231
Score = 34.5 bits (78), Expect = 0.087
Identities = 35/173 (20%), Positives = 80/173 (46%)
Query: 8 KKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKN 67
KK KK K +E + + + K K +++N+ + T
Sbjct: 58 KKHIKKSDAALVVLTHIACGKAKEADDKLQDKSKQAEHENQINWFKSAIGLTAAAALLLA 117
Query: 68 KNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKK 127
+++ KK + KKE + R + E E+E++KT+ +++ K E +
Sbjct: 118 ACFADDQDKKIELAQAKKEAENARDRANKSGIELEQEEQKTEQEKQKTEKEGIELANSQI 177
Query: 128 EAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEK 180
+AE++K+K ++K+K + + +K K + +++K++T+ ++++ K +K
Sbjct: 178 KAEQEKQKTEQEKQKTEQEKQKTSNIANKNAIELEQEKQKTENEKQDLIKEQK 230
Score = 34.1 bits (77), Expect = 0.11
Identities = 35/133 (26%), Positives = 68/133 (51%), Gaps = 7/133 (5%)
Query: 28 KEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEK 87
K+ E + K+ E + NKS E E++++ ++EK K + E + + ++K+K
Sbjct: 126 KKIELAQAKKEAENARDRANKSGIELEQEEQKTEQEKQKTEKEGIELANSQIKAEQEKQK 185
Query: 88 NKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKS 147
E++K++ E+EK+KT N NKN E+E++K E E++ + +K + +
Sbjct: 186 T------EQEKQKTEQEKQKTSNIA-NKNAIELEQEKQKTENEKQDLIKEQKDFIKEAEQ 238
Query: 148 RKEEEEEEKKKKK 160
+E + KK
Sbjct: 239 NCQENHNQFFIKK 251
Score = 32.6 bits (73), Expect = 0.39
Identities = 25/120 (20%), Positives = 64/120 (53%)
Query: 27 RKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKE 86
+ E + K+ + +++ NK+ E+E++K ++K+K + + + + K + K+K
Sbjct: 127 KIELAQAKKEAENARDRANKSGIELEQEEQKTEQEKQKTEKEGIELANSQIKAEQEKQKT 186
Query: 87 KNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNK 146
+ + + ++EK+K + K E+ K K+ E+++ KE ++ K+ + ++N N+
Sbjct: 187 EQEKQKTEQEKQKTSNIANKNAIELEQEKQKTENEKQDLIKEQKDFIKEAEQNCQENHNQ 246
Score = 31.4 bits (70), Expect = 0.89
Identities = 25/129 (19%), Positives = 65/129 (50%)
Query: 59 TKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKS 118
KK + ++ E + + ++ + + + + ++EK+K +E + ++ K + +
Sbjct: 124 QDKKIELAQAKKEAENARDRANKSGIELEQEEQKTEQEKQKTEKEGIELANSQIKAEQEK 183
Query: 119 RKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKN 178
+K E+EK+K +EK+K + +++++ E +K+ K++K K+ E+ ++N
Sbjct: 184 QKTEQEKQKTEQEKQKTSNIANKNAIELEQEKQKTENEKQDLIKEQKDFIKEAEQNCQEN 243
Query: 179 EKAVRLTKL 187
+ KL
Sbjct: 244 HNQFFIKKL 252
>gnl|CDD|218440 pfam05110, AF-4, AF-4 proto-oncoprotein. This family consists of
AF4 (Proto-oncogene AF4) and FMR2 (Fragile X E mental
retardation syndrome) nuclear proteins. These proteins
have been linked to human diseases such as acute
lymphoblastic leukaemia and mental retardation. The
family also contains a Drosophila AF4 protein homologue
Lilliputian which contains an AT-hook domain.
Lilliputian represents a novel pair-rule gene that acts
in cytoskeleton regulation, segmentation and
morphogenesis in Drosophila.
Length = 1154
Score = 36.8 bits (85), Expect = 0.025
Identities = 24/148 (16%), Positives = 54/148 (36%), Gaps = 8/148 (5%)
Query: 4 KKEEKKKKKKRRTKKKEKNKNKSRKEE--EEEKRTKKKEKNKKNKNKSRKEEEKKKRTKK 61
K KK+ EK+ +K +++ +EE + +K + + S
Sbjct: 726 KDSLSAPKKQTSKTASEKSSSKGKRKHKNDEEADKIESKKQRLEEKSSSCSPSSSSSHHH 785
Query: 62 KEKNKNKNRKEEKKKKKKRRT------KKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNK 115
NK + K+++ + K ++ SRK +++E + K
Sbjct: 786 SSSNKESRKSSRNKEEEMLPSPSSPLSSSSPKPEHPSRKRPRRQEDTSSSSGPFSASSTK 845
Query: 116 NKSRKEEEEKKKEAEEKKKKRTKKKEKN 143
+ S+ K ++ E K +K+ + +
Sbjct: 846 SSSKSSSTSKHRKTEGKGSSTSKEHKGS 873
Score = 35.7 bits (82), Expect = 0.054
Identities = 26/174 (14%), Positives = 64/174 (36%), Gaps = 10/174 (5%)
Query: 7 EKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNK 66
KK K EK+ + K++ + ++K + K K K + +EE K KK++
Sbjct: 712 GHPYKKGVPPKPAEKDSLSAPKKQTSKTASEK--SSSKGKRKHKNDEEADKIESKKQRL- 768
Query: 67 NKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKK 126
++K + + S +E +K + ++++ + S + E
Sbjct: 769 -------EEKSSSCSPSSSSSHHHSSSNKESRKSSRNKEEEMLPSPSSPLSSSSPKPEHP 821
Query: 127 KEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEK 180
++++ T + S + + K +K + + +E + +
Sbjct: 822 SRKRPRRQEDTSSSSGPFSASSTKSSSKSSSTSKHRKTEGKGSSTSKEHKGSSG 875
Score = 34.9 bits (80), Expect = 0.097
Identities = 21/94 (22%), Positives = 41/94 (43%), Gaps = 1/94 (1%)
Query: 70 RKEEKKKKKKRRTKKKEKNK-NKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKE 128
R KK K EK+ + +K+ K +E+ K K K KN ++ K E +K++
Sbjct: 709 RIPGHPYKKGVPPKPAEKDSLSAPKKQTSKTASEKSSSKGKRKHKNDEEADKIESKKQRL 768
Query: 129 AEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKK 162
E+ + + S +E + + K+++
Sbjct: 769 EEKSSSCSPSSSSSHHHSSSNKESRKSSRNKEEE 802
Score = 32.6 bits (74), Expect = 0.42
Identities = 28/153 (18%), Positives = 60/153 (39%), Gaps = 7/153 (4%)
Query: 4 KKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKE 63
K K K+K + ++ +K ++K ++ EE+ + + + S KE K R K++E
Sbjct: 743 KSSSKGKRKHKNDEEADKIESKKQRLEEKSSSCSPSSSSSHHHSSSNKESRKSSRNKEEE 802
Query: 64 -------KNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKN 116
+ + K E +K+ R ++ + + K + + +K+++
Sbjct: 803 MLPSPSSPLSSSSPKPEHPSRKRPRRQEDTSSSSGPFSASSTKSSSKSSSTSKHRKTEGK 862
Query: 117 KSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRK 149
S +E K + K + N S K
Sbjct: 863 GSSTSKEHKGSSGDTPNKASSFPVPPLSNGSSK 895
Score = 31.4 bits (71), Expect = 1.2
Identities = 29/134 (21%), Positives = 56/134 (41%), Gaps = 2/134 (1%)
Query: 19 KEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKK 78
KE S KE+ + +K ++ + K KS + E +++ K + +K EK
Sbjct: 493 KEPPPKSSSKEKRRPRTAQKGPESGRGKQKSPAQSEAP--PQRRTVGKKQPKKPEKASAG 550
Query: 79 KRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTK 138
RT + +++ + + ++ K K K RKE + A EK+K ++
Sbjct: 551 DERTGLRPESEPGTLPYGSSVQTPPDRPKAATKGSRKPSPRKEPKSSVPPAAEKRKYKSP 610
Query: 139 KKEKNKNKSRKEEE 152
K K++ E +
Sbjct: 611 SKIVPKSREFIETD 624
Score = 28.7 bits (64), Expect = 7.4
Identities = 16/79 (20%), Positives = 35/79 (44%)
Query: 105 KKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKK 164
KK K K+ +++ K A EK + K+K KN ++ K E ++++ ++K
Sbjct: 716 KKGVPPKPAEKDSLSAPKKQTSKTASEKSSSKGKRKHKNDEEADKIESKKQRLEEKSSSC 775
Query: 165 KKRTKKKEEEKRKNEKAVR 183
+ N+++ +
Sbjct: 776 SPSSSSSHHHSSSNKESRK 794
>gnl|CDD|218336 pfam04935, SURF6, Surfeit locus protein 6. The surfeit locus
protein SURF-6 is shown to be a component of the
nucleolar matrix and has a strong binding capacity for
nucleic acids.
Length = 206
Score = 35.4 bits (82), Expect = 0.026
Identities = 54/186 (29%), Positives = 103/186 (55%), Gaps = 3/186 (1%)
Query: 4 KKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKE 63
+++ +++K +++ K+KE K + ++ E E+ ++ K+KK E +K +
Sbjct: 12 RRKREQRKARKKQKRKEAKKKEDAQKSEAEEVKNEENKSKKKAAPIENAEGNIVFSKVEF 71
Query: 64 KNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEA---EEEKKKTKNKEKNKNKSRK 120
+ + +K+ K KKKK++ K K K + KKK E++ + + KEK K
Sbjct: 72 ADGEQAKKDLKLKKKKKKKKTDYKQLLKKLEARKKKLEELDEDKAAEIEEKEKWTKALAK 131
Query: 121 EEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEK 180
E K K+ E+ KK K+KEK K KS+KE +E ++K +KKK ++++ +++ +KRK++K
Sbjct: 132 AEGVKVKDDEKLLKKALKRKEKQKKKSKKEWKERKEKVEKKKAERQKKREENLKKRKDDK 191
Query: 181 AVRLTK 186
+ K
Sbjct: 192 KNKKKK 197
Score = 34.6 bits (80), Expect = 0.047
Identities = 53/180 (29%), Positives = 104/180 (57%), Gaps = 1/180 (0%)
Query: 4 KKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKE 63
KK+++K+ KK+ +K + + +E + +K+ E + N S+ E ++ KK
Sbjct: 22 KKQKRKEAKKKEDAQKSEAEEVKNEENKSKKKAAPIENAEGNIVFSKVEFADGEQAKKDL 81
Query: 64 KNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEE 123
K K K +K++ K+ + + K K + E+K E EE++K TK K + K++E
Sbjct: 82 KLKKKKKKKKTDYKQLLKKLEARKKKLEELDEDKAAEIEEKEKWTKALAKAEGVKVKDDE 141
Query: 124 EKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKAVR 183
+ K+A ++K+K+ KKK K + K RKE+ E++K +++KK+++ K+K+++K K +K +
Sbjct: 142 KLLKKALKRKEKQ-KKKSKKEWKERKEKVEKKKAERQKKREENLKKRKDDKKNKKKKKAK 200
Score = 31.1 bits (71), Expect = 0.71
Identities = 51/160 (31%), Positives = 81/160 (50%), Gaps = 4/160 (2%)
Query: 25 KSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKK 84
S +E E+R +K+E+ K K + RKE +KK+ +K E + KN + + KKK
Sbjct: 1 PSSREALLEQRRRKREQRKARKKQKRKEAKKKEDAQKSEAEEVKNEENKSKKKAAPIENA 60
Query: 85 KEK----NKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKK 140
+ + E+ KK+ + +KKK K K K +K E KKK E + K + +
Sbjct: 61 EGNIVFSKVEFADGEQAKKDLKLKKKKKKKKTDYKQLLKKLEARKKKLEELDEDKAAEIE 120
Query: 141 EKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEK 180
EK K + E K K +K KK K+KE++K+K++K
Sbjct: 121 EKEKWTKALAKAEGVKVKDDEKLLKKALKRKEKQKKKSKK 160
>gnl|CDD|200340 TIGR03927, T7SS_EssA_Firm, type VII secretion protein EssA.
Members of this family are associated with type VII
secretion of WXG100 family targets in the Firmicutes,
but not in the Actinobacteria. This highly divergent
protein family consists largely of a central region of
highly polar low-complexity sequence containing
occasional LF motifs in weak repeats about 17 residues
in length, flanked by hydrophobic N- and C-terminal
regions [Protein fate, Protein and peptide secretion and
trafficking].
Length = 150
Score = 34.7 bits (80), Expect = 0.027
Identities = 17/88 (19%), Positives = 37/88 (42%), Gaps = 1/88 (1%)
Query: 16 TKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEK-NKNKNRKEEK 74
K E N + ++E E +K E+ KK + KE+ +++ K + K
Sbjct: 33 KKDIEINTDYLQEETELDKELFTPEEQKKITFQKHKEKPEQEELKNQLFSENATENNTVK 92
Query: 75 KKKKKRRTKKKEKNKNKSRKEEKKKEAE 102
KK+ + + E+ + S +++ +
Sbjct: 93 ATKKQLFSSEYEQTSSSSESTSEEETKK 120
Score = 31.2 bits (71), Expect = 0.48
Identities = 24/99 (24%), Positives = 44/99 (44%), Gaps = 11/99 (11%)
Query: 59 TKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKS 118
K E N + ++E + K+ +E+ K +K ++K E EE K + ++ +N +
Sbjct: 33 KKDIEINTDYLQEETELDKEL--FTPEEQKKITFQKHKEKPEQEELKNQLFSENATENNT 90
Query: 119 RKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKK 157
K KK+ + + E+ + S EEE KK
Sbjct: 91 VK---------ATKKQLFSSEYEQTSSSSESTSEEETKK 120
Score = 30.0 bits (68), Expect = 1.1
Identities = 15/93 (16%), Positives = 43/93 (46%), Gaps = 4/93 (4%)
Query: 36 TKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKE 95
KK + + + E +K+ T +++K + +EK ++++ + + +N ++
Sbjct: 32 EKKDIEINTDYLQEETELDKELFTPEEQKKITFQKHKEKPEQEELKNQLFSENATEN--- 88
Query: 96 EKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKE 128
+A +++ + E+ + S EE+ K+
Sbjct: 89 -NTVKATKKQLFSSEYEQTSSSSESTSEEETKK 120
Score = 28.9 bits (65), Expect = 2.7
Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 3/79 (3%)
Query: 86 EKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKN 145
K + K + EKK E +E+ + E++K+ +K K ++E+ KN
Sbjct: 22 GKLQVKPNRYEKKDI---EINTDYLQEETELDKELFTPEEQKKITFQKHKEKPEQEELKN 78
Query: 146 KSRKEEEEEEKKKKKKKKK 164
+ E E K KK+
Sbjct: 79 QLFSENATENNTVKATKKQ 97
Score = 28.5 bits (64), Expect = 3.6
Identities = 17/93 (18%), Positives = 41/93 (44%), Gaps = 3/93 (3%)
Query: 86 EKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKN 145
EK + + ++E E +K+ +E+ K ++ K+K +E+ K + + +N
Sbjct: 32 EKKDIEINTDYLQEETELDKELFTPEEQKKIT---FQKHKEKPEQEELKNQLFSENATEN 88
Query: 146 KSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKN 178
+ K +++ + ++ EEE +K
Sbjct: 89 NTVKATKKQLFSSEYEQTSSSSESTSEEETKKT 121
>gnl|CDD|220623 pfam10186, Atg14, UV radiation resistance protein and
autophagy-related subunit 14. The Atg14 or Apg14
proteins are hydrophilic proteins with a predicted
molecular mass of 40.5 kDa, and have a coiled-coil motif
at the N terminus region. Yeast cells with mutant Atg14
are defective not only in autophagy but also in sorting
of carboxypeptidase Y (CPY), a vacuolar-soluble
hydrolase, to the vacuole. Subcellular fractionation
indicate that Apg14p and Apg6p are peripherally
associated with a membrane structure(s). Apg14p was
co-immunoprecipitated with Apg6p, suggesting that they
form a stable protein complex. These results imply that
Apg6/Vps30p has two distinct functions: in the
autophagic process and in the vacuolar protein sorting
pathway. Apg14p may be a component specifically required
for the function of Apg6/Vps30p through the autophagic
pathway. There are 17 auto-phagosomal component proteins
which are categorized into six functional units, one of
which is the AS-PI3K complex (Vps30/Atg6 and Atg14). The
AS-PI3K complex and the Atg2-Atg18 complex are essential
for nucleation, and the specific function of the AS-PI3K
apparently is to produce phosphatidylinositol
3-phosphate (PtdIns(3)P) at the pre-autophagosomal
structure (PAS). The localisation of this complex at the
PAS is controlled by Atg14. Autophagy mediates the
cellular response to nutrient deprivation, protein
aggregation, and pathogen invasion in humans, and
malfunction of autophagy has been implicated in multiple
human diseases including cancer. This effect seems to be
mediated through direct interaction of the human Atg14
with Beclin 1 in the human phosphatidylinositol 3-kinase
class III complex.
Length = 307
Score = 35.8 bits (83), Expect = 0.027
Identities = 20/130 (15%), Positives = 54/130 (41%), Gaps = 7/130 (5%)
Query: 16 TKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNR----- 70
+ + + EE +++ ++ + N++ + K +K++ N+ R
Sbjct: 23 YELRLDLARLLLENEELKQKVEEALEGATNEDGKLAADLLKLEVARKKERLNQIRARISQ 82
Query: 71 -KEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEA 129
KEE ++K++R + K + R + + EK++ EK +++ ++ +
Sbjct: 83 LKEEIEQKRERIEELKRALAQR-RSDLSSASYQLEKRRASQLEKLQDEIKRTRSKLNALH 141
Query: 130 EEKKKKRTKK 139
+KR+
Sbjct: 142 SLLAEKRSFL 151
Score = 34.3 bits (79), Expect = 0.098
Identities = 21/104 (20%), Positives = 44/104 (42%), Gaps = 2/104 (1%)
Query: 48 KSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKK 107
EE K+K + E N++ K K +KKE+ + + KE E+K++
Sbjct: 33 LLENEELKQKVEEALEGATNEDGKLAADLLKLEVARKKERLNQIRARISQLKEEIEQKRE 92
Query: 108 TKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEE 151
+ K R+ + + +K+R + EK +++ ++
Sbjct: 93 RIEELKRALAQRRSDLSSAS--YQLEKRRASQLEKLQDEIKRTR 134
Score = 33.9 bits (78), Expect = 0.13
Identities = 22/95 (23%), Positives = 44/95 (46%), Gaps = 2/95 (2%)
Query: 95 EEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEE 154
E+ K A+ K + K++ N+ R + K+E E+K+++ + K R+ +
Sbjct: 53 EDGKLAADLLKLEVARKKERLNQIRARISQLKEEIEQKRERIEELKRALAQ--RRSDLSS 110
Query: 155 EKKKKKKKKKKKRTKKKEEEKRKNEKAVRLTKLSA 189
+ +K++ + K ++E KR K L L A
Sbjct: 111 ASYQLEKRRASQLEKLQDEIKRTRSKLNALHSLLA 145
Score = 31.2 bits (71), Expect = 1.0
Identities = 17/104 (16%), Positives = 43/104 (41%), Gaps = 7/104 (6%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKN-----KSRKEEEKK 56
+ EE K+K + + K + + + +KKE+ + + K E++++
Sbjct: 33 LLENEELKQKVEEALEGATNEDGKLAADLLKLEVARKKERLNQIRARISQLKEEIEQKRE 92
Query: 57 KRTKKKEKNKNKNRKEEKK--KKKKRRTKKKEKNKNKSRKEEKK 98
+ + K + + +KRR + EK +++ ++ K
Sbjct: 93 RIEELKRALAQRRSDLSSASYQLEKRRASQLEKLQDEIKRTRSK 136
>gnl|CDD|227519 COG5192, BMS1, GTP-binding protein required for 40S ribosome
biogenesis [Translation, ribosomal structure and
biogenesis].
Length = 1077
Score = 36.3 bits (83), Expect = 0.029
Identities = 15/54 (27%), Positives = 31/54 (57%)
Query: 124 EKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRK 177
E+ K+ EEK++ + ++ K + +KE+E E++ +K K KK +K++
Sbjct: 1024 ERIKDQEEKERMESLQRAKEEEIGKKEKEREQRIRKTIHDNYKEMAKKRLKKKR 1077
Score = 34.7 bits (79), Expect = 0.098
Identities = 18/66 (27%), Positives = 33/66 (50%)
Query: 1 CKNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTK 60
C+ K E K + K R K +E+ + + +E+ KKEK ++ + + + K+ K
Sbjct: 1011 CREKHEIKDRIVKERIKDQEEKERMESLQRAKEEEIGKKEKEREQRIRKTIHDNYKEMAK 1070
Query: 61 KKEKNK 66
K+ K K
Sbjct: 1071 KRLKKK 1076
Score = 34.7 bits (79), Expect = 0.11
Identities = 18/92 (19%), Positives = 43/92 (46%), Gaps = 6/92 (6%)
Query: 8 KKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKN 67
K+ +++ E +E+ E K KE+ K + K R E ++ + ++ K
Sbjct: 992 DKRSIAVVSRRIELPVPPECREKHEIKDRIVKERIKDQEEKERMESLQRAKEEEIGK--- 1048
Query: 68 KNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKK 99
KE++++++ R+T + ++ +KK+
Sbjct: 1049 ---KEKEREQRIRKTIHDNYKEMAKKRLKKKR 1077
Score = 33.9 bits (77), Expect = 0.17
Identities = 21/94 (22%), Positives = 43/94 (45%), Gaps = 4/94 (4%)
Query: 51 KEEEKKKRTKKKEKNKNKNRKE----EKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKK 106
+E E K K+ R E + ++K + K + K ++E+++ E+ + K
Sbjct: 983 REIESKLPLDKRSIAVVSRRIELPVPPECREKHEIKDRIVKERIKDQEEKERMESLQRAK 1042
Query: 107 KTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKK 140
+ + +K K + ++ + +E KKR KKK
Sbjct: 1043 EEEIGKKEKEREQRIRKTIHDNYKEMAKKRLKKK 1076
Score = 33.6 bits (76), Expect = 0.26
Identities = 18/73 (24%), Positives = 40/73 (54%), Gaps = 4/73 (5%)
Query: 95 EEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEE 154
E +++ E + + K + K++ +E+E + K+++ KK+++ + + RK +
Sbjct: 1009 PECREKHEIKDRIVKERIKDQ----EEKERMESLQRAKEEEIGKKEKEREQRIRKTIHDN 1064
Query: 155 EKKKKKKKKKKKR 167
K+ KK+ KKKR
Sbjct: 1065 YKEMAKKRLKKKR 1077
Score = 33.2 bits (75), Expect = 0.32
Identities = 31/173 (17%), Positives = 67/173 (38%)
Query: 5 KEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEK 64
+E ++ K K E + + E+ +K ++ + ++ E E ++ KK
Sbjct: 513 EECIEEYKGESAKSSESDLVVQDEPEDFFDVSKVANESISSNHEKLMESEFEELKKKWSS 572
Query: 65 NKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEE 124
+ +K ++E ++ + + E EE + +E + E EE
Sbjct: 573 LAQLKSRFQKDATLDSIEGEEELIQDDEKGNFEDLEDEENSSDNEMEESRGSSVTAENEE 632
Query: 125 KKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRK 177
E + + ++ ++K + + E EE +KK K+K EE+ K
Sbjct: 633 SADEVDYETEREENARKKEELRGNFELEERGDPEKKDVDWYTEEKRKIEEQLK 685
Score = 32.4 bits (73), Expect = 0.48
Identities = 13/93 (13%), Positives = 42/93 (45%)
Query: 28 KEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEK 87
+E E + K+ ++ + + + + K R +++++K++ + ++ K
Sbjct: 983 REIESKLPLDKRSIAVVSRRIELPVPPECREKHEIKDRIVKERIKDQEEKERMESLQRAK 1042
Query: 88 NKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRK 120
+ +KE+++++ + KE K + +K
Sbjct: 1043 EEEIGKKEKEREQRIRKTIHDNYKEMAKKRLKK 1075
Score = 32.4 bits (73), Expect = 0.50
Identities = 21/100 (21%), Positives = 45/100 (45%), Gaps = 5/100 (5%)
Query: 89 KNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAE-----EKKKKRTKKKEKN 143
+N S EE AEE+ + E ++ + E E ++K K
Sbjct: 963 QNDSSSEEMGYGAEEDYSLPREIESKLPLDKRSIAVVSRRIELPVPPECREKHEIKDRIV 1022
Query: 144 KNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKAVR 183
K + + +EE+E + ++ K+++ KK++E +++ K +
Sbjct: 1023 KERIKDQEEKERMESLQRAKEEEIGKKEKEREQRIRKTIH 1062
Score = 32.0 bits (72), Expect = 0.63
Identities = 20/74 (27%), Positives = 40/74 (54%), Gaps = 6/74 (8%)
Query: 6 EEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKN 65
E ++K + + KE+ K++ KE E + K+E+ K KE+E+++R +K +
Sbjct: 1010 ECREKHEIKDRIVKERIKDQEEKERMESLQRAKEEEIGK------KEKEREQRIRKTIHD 1063
Query: 66 KNKNRKEEKKKKKK 79
K +++ KKK+
Sbjct: 1064 NYKEMAKKRLKKKR 1077
Score = 32.0 bits (72), Expect = 0.69
Identities = 10/55 (18%), Positives = 33/55 (60%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKK 56
K + +++++K++ + ++ K + +KE+E E+R +K + + ++ ++K+
Sbjct: 1023 KERIKDQEEKERMESLQRAKEEEIGKKEKEREQRIRKTIHDNYKEMAKKRLKKKR 1077
Score = 31.2 bits (70), Expect = 1.2
Identities = 32/182 (17%), Positives = 71/182 (39%), Gaps = 7/182 (3%)
Query: 5 KEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEK 64
K + KR ++ ++S EE + K + + ++E + K
Sbjct: 488 KLAYSQSGKRGRNIQKIFYDESLSPEECIEEYKGESAKSSESDLVVQDEPEDFFDVSKVA 547
Query: 65 NKNKNRKEEK-------KKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNK 117
N++ + EK + KKK + + K++ + E EEE + K ++
Sbjct: 548 NESISSNHEKLMESEFEELKKKWSSLAQLKSRFQKDATLDSIEGEEELIQDDEKGNFEDL 607
Query: 118 SRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRK 177
+E + E + T + E++ ++ E E EE +KK++ + ++ + K
Sbjct: 608 EDEENSSDNEMEESRGSSVTAENEESADEVDYETEREENARKKEELRGNFELEERGDPEK 667
Query: 178 NE 179
+
Sbjct: 668 KD 669
Score = 30.5 bits (68), Expect = 2.2
Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 48 KSRKEEEKKKRTKKKEKN-KNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKK 106
K E K + K++ K+ + K R E ++ K+ KKEK + + ++ +E K
Sbjct: 1011 CREKHEIKDRIVKERIKDQEEKERMESLQRAKEEEIGKKEKEREQRIRKTIHDNYKEMAK 1070
Query: 107 KTKNKEK 113
K K++
Sbjct: 1071 KRLKKKR 1077
Score = 29.7 bits (66), Expect = 3.1
Identities = 15/65 (23%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 119 RKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKN 178
+E+ E K +++ K ++KE+ ++ +EEE KK+K+++++ R + K
Sbjct: 1011 CREKHEIKDRIVKERIKDQEEKER-MESLQRAKEEEIGKKEKEREQRIRKTIHDNYKEMA 1069
Query: 179 EKAVR 183
+K ++
Sbjct: 1070 KKRLK 1074
Score = 28.9 bits (64), Expect = 6.6
Identities = 23/107 (21%), Positives = 45/107 (42%), Gaps = 6/107 (5%)
Query: 27 RKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRT------KKKEKNKNKNRKEEKKKKKKR 80
EE + +E K R +R + +EK++ K+R +++ K +
Sbjct: 971 MGYGAEEDYSLPREIESKLPLDKRSIAVVSRRIELPVPPECREKHEIKDRIVKERIKDQE 1030
Query: 81 RTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKK 127
++ E + +E KKE E E++ K N + K+ +KK+
Sbjct: 1031 EKERMESLQRAKEEEIGKKEKEREQRIRKTIHDNYKEMAKKRLKKKR 1077
>gnl|CDD|223683 COG0610, COG0610, Type I site-specific restriction-modification
system, R (restriction) subunit and related helicases
[Defense mechanisms].
Length = 962
Score = 36.2 bits (84), Expect = 0.031
Identities = 36/191 (18%), Positives = 65/191 (34%), Gaps = 13/191 (6%)
Query: 4 KKEEKKKKKKRRTKKKEKNKNKSRKEEEE-----EKRTKKKEKNKKNKNKSRKEEEKKKR 58
+ EK + K N + K++E + + E K + E +
Sbjct: 765 ARLEKDYQSKYLDLIDNLNDAREIKDKESKAIDLDDIDFELELIGKQEINIDYILELLQT 824
Query: 59 TKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKS 118
K ++ ++ K+ ++K K R E + +K T K +
Sbjct: 825 FNDKNGAYESLKELIERIIKEWIEDLRQKKKLIERLIEAINQYRAKKLDTAEKLEELYIL 884
Query: 119 RKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEK--------KKKKKKKKKKRTKK 170
K+EEE K+ AEE+ + + + E K+K ++K K K
Sbjct: 885 AKKEEEFKQFAEEEGLNEEELAFYDDLALNGGKLPENGTELVEKLAKEKSLREKNKDDWK 944
Query: 171 KEEEKRKNEKA 181
+EE KA
Sbjct: 945 AKEEVEAKLKA 955
Score = 33.2 bits (76), Expect = 0.26
Identities = 22/126 (17%), Positives = 51/126 (40%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKK 61
+ K+ KE ++ +K++ E+ + + + K + ++ E+ K
Sbjct: 827 DKNGAYESLKELIERIIKEWIEDLRQKKKLIERLIEAINQYRAKKLDTAEKLEELYILAK 886
Query: 62 KEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKE 121
KE+ + +EE +++ E + E+ K+ +EKNK+ + +
Sbjct: 887 KEEEFKQFAEEEGLNEEELAFYDDLALNGGKLPENGTELVEKLAKEKSLREKNKDDWKAK 946
Query: 122 EEEKKK 127
EE + K
Sbjct: 947 EEVEAK 952
>gnl|CDD|234055 TIGR02907, spore_VI_D, stage VI sporulation protein D. SpoVID, the
stage VI sporulation protein D, is restricted to
endospore-forming members of the bacteria, all of which
are found among the Firmicutes. It is widely distributed
but not quite universal in this group. Between
well-conserved N-terminal and C-terminal domains is a
poorly conserved, low-complexity region of variable
length, rich enough in glutamic acid to cause spurious
BLAST search results unless a filter is used. The seed
alignment for this model was trimmed, in effect, by
choosing member sequences in which these regions are
relatively short. SpoVID is involved in spore coat
assembly by the mother cell compartment late in the
process of sporulation [Cellular processes, Sporulation
and germination].
Length = 338
Score = 36.0 bits (83), Expect = 0.032
Identities = 23/117 (19%), Positives = 57/117 (48%), Gaps = 1/117 (0%)
Query: 71 KEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAE 130
+EE +++R + K +++ + E+ + + ++ K E + +S E +++ E
Sbjct: 166 QEETAGEEERTDEPKVEHE-AHEQHEQPADDDPDEWKISASEPFQLESEVEASPEEENYE 224
Query: 131 EKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKAVRLTKL 187
E + + + E + ++ E+ +++ KK +++EE+ + E A LTKL
Sbjct: 225 EYEDETELEVEDEEKALDEQTEDPQQEDALAGDAKKALEEEEEKGERPENATYLTKL 281
Score = 30.2 bits (68), Expect = 1.8
Identities = 26/132 (19%), Positives = 59/132 (44%), Gaps = 8/132 (6%)
Query: 28 KEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEK 87
+E+EEE+ + E + ++ EEE+ + K +++ + E+ K
Sbjct: 148 REDEEEEESFSAEFEHPAQEETAGEEER--TDEPKVEHEAHEQHEQPADDDPDEWKISAS 205
Query: 88 NKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKS 147
+ E EA E++ + E +++ E E+++K +E+ + ++ +
Sbjct: 206 EPFQLESEV---EASPEEENYEEYE---DETELEVEDEEKALDEQTEDPQQEDALAGDAK 259
Query: 148 RKEEEEEEKKKK 159
+ EEEEEK ++
Sbjct: 260 KALEEEEEKGER 271
>gnl|CDD|218068 pfam04403, PqiA, Paraquat-inducible protein A. Paraquat is a
superoxide radical-generating agent. The promoter for
the pqiA gene is also inducible by other known
superoxide generators. This is predicted to be a family
of integral membrane proteins, possibly located in the
inner membrane. This family is related to NADH
dehydrogenase subunit 2 (pfam00361).
Length = 162
Score = 34.8 bits (81), Expect = 0.033
Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Query: 235 GLLFSLF-INDIAEIFPGFNFWLFA 258
G+L +L + D+A+I PG FW FA
Sbjct: 112 GILVALVKLGDLADIEPGPGFWAFA 136
>gnl|CDD|221389 pfam12037, DUF3523, Domain of unknown function (DUF3523). This
presumed domain is functionally uncharacterized. This
domain is found in eukaryotes. This domain is typically
between 257 to 277 amino acids in length. This domain is
found associated with pfam00004. This domain has a
conserved LER sequence motif.
Length = 276
Score = 35.5 bits (82), Expect = 0.037
Identities = 28/161 (17%), Positives = 80/161 (49%), Gaps = 7/161 (4%)
Query: 16 TKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKK 75
+K +EK + + E E + + + ++ + ++R E E++++T +++ + + R + +
Sbjct: 57 SKMQEKTR---QAELEAKIKEYEAQQAQAKLERARVEAEERRKTLQEQTQQEQQRAQYQD 113
Query: 76 KKKKRRTKKKEKNKNKSRKEEKKKEAE----EEKKKTKNKEKNKNKSRKEEEEKKKEAEE 131
+ ++R +K+ + + + +E K + E +E + +E+ R+ EE+ + E
Sbjct: 114 ELARKRYQKELEQQRRQNEELLKMQEESVLRQEAMRRATEEEILEMRRETIEEEAELERE 173
Query: 132 KKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKE 172
+ + + + + + K +E E+ ++ K K ++R E
Sbjct: 174 NIRAKIEAEARGRAKEERENEDINREMLKLKANEERETVLE 214
Score = 34.0 bits (78), Expect = 0.12
Identities = 25/164 (15%), Positives = 82/164 (50%), Gaps = 11/164 (6%)
Query: 5 KEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEK 64
E + K K+ ++ + ++R E EE ++T +++ ++ + ++E +KR +K+ +
Sbjct: 66 AELEAKIKEYEAQQAQAKLERARVEAEERRKTLQEQTQQEQQRAQYQDELARKRYQKELE 125
Query: 65 NKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEE 124
+ + + EE K ++ ++E + + +E + E +++ + + +N
Sbjct: 126 QQRR-QNEELLKMQEESVLRQEAMRRATEEEILEMRRETIEEEAELERENI--------- 175
Query: 125 KKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRT 168
+ + E + + R K++ +N++ +R+ + + ++++ + +T
Sbjct: 176 -RAKIEAEARGRAKEERENEDINREMLKLKANEERETVLESIKT 218
Score = 29.7 bits (67), Expect = 2.3
Identities = 16/120 (13%), Positives = 63/120 (52%), Gaps = 8/120 (6%)
Query: 70 RKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEA 129
+ +EK ++ + K KE +++ + ++ E E+++ +E+ + + ++ + + +
Sbjct: 58 KMQEKTRQAELEAKIKEYEAQQAQAKLERARVEAEERRKTLQEQTQQEQQRAQYQDELAR 117
Query: 130 EEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKK--------KKKRTKKKEEEKRKNEKA 181
+ +K+ +++ +N+ + +EE +++ ++ +++ +++ E +R+N +A
Sbjct: 118 KRYQKELEQQRRQNEELLKMQEESVLRQEAMRRATEEEILEMRRETIEEEAELERENIRA 177
Score = 29.3 bits (66), Expect = 3.4
Identities = 22/134 (16%), Positives = 67/134 (50%), Gaps = 8/134 (5%)
Query: 50 RKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTK 109
+ E E K + + ++ + K + + +++R+T +++ + + R + + + A +K
Sbjct: 65 QAELEAKIKEYEAQQAQAKLERARVEAEERRKTLQEQTQQEQQRAQYQDELA----RKRY 120
Query: 110 NKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKR-- 167
KE + + + EE K +E +++ ++ + + + E EE+ + +++ + +
Sbjct: 121 QKELEQQRRQNEELLKMQEESVLRQEAMRRATEEEILEMRRETIEEEAELERENIRAKIE 180
Query: 168 --TKKKEEEKRKNE 179
+ + +E+R+NE
Sbjct: 181 AEARGRAKEERENE 194
>gnl|CDD|217756 pfam03839, Sec62, Translocation protein Sec62.
Length = 217
Score = 35.2 bits (81), Expect = 0.038
Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 119 RKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTK-KKEEEKRK 177
R E EK K ++K K +++K+ ++ + K + ++ KK ++ KKEE+K+
Sbjct: 14 RALESEKYKANKDKGNPEIYNKINSQDKAIEKFKLLIKAQMAERVKKLHSQEKKEEKKKP 73
Query: 178 NEKAVRL 184
+K V L
Sbjct: 74 KKKKVPL 80
Score = 34.8 bits (80), Expect = 0.050
Identities = 15/57 (26%), Positives = 26/57 (45%)
Query: 83 KKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKK 139
K K+K K ++ +K K K + R ++ +++ EEKKK + KK
Sbjct: 21 YKANKDKGNPEIYNKINSQDKAIEKFKLLIKAQMAERVKKLHSQEKKEEKKKPKKKK 77
Score = 34.8 bits (80), Expect = 0.053
Identities = 16/67 (23%), Positives = 33/67 (49%)
Query: 4 KKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKE 63
K + K K K +++K+ ++ + + + E+ KK ++ +KEE+KK + KK
Sbjct: 20 KYKANKDKGNPEIYNKINSQDKAIEKFKLLIKAQMAERVKKLHSQEKKEEKKKPKKKKVP 79
Query: 64 KNKNKNR 70
N +
Sbjct: 80 LQVNPAQ 86
Score = 34.8 bits (80), Expect = 0.056
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 37 KKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRK 94
K K+K N K + K +K K K + E+ KK + KK+EK K K +K
Sbjct: 21 YKANKDKGNPEIYNKINSQDKA-IEKFKLLIKAQMAERVKKLHSQEKKEEKKKPKKKK 77
Score = 34.4 bits (79), Expect = 0.065
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 101 AEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSR-KEEEEEEKKKK 159
A E +K NK+K E K +++K ++ K K + R K+ +EKK++
Sbjct: 15 ALESEKYKANKDK-----GNPEIYNKINSQDKAIEKFKLLIKAQMAERVKKLHSQEKKEE 69
Query: 160 KKKKKKKRTK 169
KKK KKK+
Sbjct: 70 KKKPKKKKVP 79
Score = 33.6 bits (77), Expect = 0.10
Identities = 13/62 (20%), Positives = 29/62 (46%)
Query: 71 KEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAE 130
E +K K + E + +++ ++ + K + K S++++EEKKK +
Sbjct: 16 LESEKYKANKDKGNPEIYNKINSQDKAIEKFKLLIKAQMAERVKKLHSQEKKEEKKKPKK 75
Query: 131 EK 132
+K
Sbjct: 76 KK 77
Score = 32.1 bits (73), Expect = 0.37
Identities = 16/56 (28%), Positives = 26/56 (46%)
Query: 94 KEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRK 149
K K K E K +++K K + + + E +K + KK+EK K K +K
Sbjct: 22 KANKDKGNPEIYNKINSQDKAIEKFKLLIKAQMAERVKKLHSQEKKEEKKKPKKKK 77
Score = 31.7 bits (72), Expect = 0.51
Identities = 13/70 (18%), Positives = 30/70 (42%)
Query: 58 RTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNK 117
R K+ + + + K K K +++K+ ++ K + ++ K + K
Sbjct: 8 RAKRVVRALESEKYKANKDKGNPEIYNKINSQDKAIEKFKLLIKAQMAERVKKLHSQEKK 67
Query: 118 SRKEEEEKKK 127
K++ +KKK
Sbjct: 68 EEKKKPKKKK 77
Score = 30.5 bits (69), Expect = 1.2
Identities = 14/76 (18%), Positives = 39/76 (51%)
Query: 9 KKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNK 68
K++ R K+ + + + ++K + +++K+ ++ + + + E+ K
Sbjct: 2 KRQDFFRAKRVVRALESEKYKANKDKGNPEIYNKINSQDKAIEKFKLLIKAQMAERVKKL 61
Query: 69 NRKEEKKKKKKRRTKK 84
+ +E+K++KKK + KK
Sbjct: 62 HSQEKKEEKKKPKKKK 77
Score = 30.5 bits (69), Expect = 1.3
Identities = 16/80 (20%), Positives = 31/80 (38%)
Query: 50 RKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTK 109
R E +K + K + N K + K + K K + R ++ + ++E+KK
Sbjct: 14 RALESEKYKANKDKGNPEIYNKINSQDKAIEKFKLLIKAQMAERVKKLHSQEKKEEKKKP 73
Query: 110 NKEKNKNKSRKEEEEKKKEA 129
K+K + + E
Sbjct: 74 KKKKVPLQVNPAQLFVDDEY 93
Score = 30.5 bits (69), Expect = 1.3
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 10/69 (14%)
Query: 95 EEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEE 154
E+ K ++ + NK +++K+ ++ + K ++ K K +E++E
Sbjct: 19 EKYKANKDKGNPEIYNKINSQDKAIEKFKLLIKAQMAERVK----------KLHSQEKKE 68
Query: 155 EKKKKKKKK 163
EKKK KKKK
Sbjct: 69 EKKKPKKKK 77
Score = 29.8 bits (67), Expect = 2.0
Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 8/67 (11%)
Query: 17 KKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKK 76
K K+K + + K EK K E KK +++K KEEKKK
Sbjct: 21 YKANKDKGNPEIYNKINSQDKAIEKFKLLIKAQMAERVKKLHSQEK--------KEEKKK 72
Query: 77 KKKRRTK 83
KK++
Sbjct: 73 PKKKKVP 79
>gnl|CDD|220267 pfam09494, Slx4, Slx4 endonuclease. The Slx4 protein is a
heteromeric structure-specific endonuclease found in
fungi. Slx4 with Slx1 acts as a nuclease on branched DNA
substrates, particularly simple-Y, 5'-flap, or
replication fork structures by cleaving the strand
bearing the 5' non-homologous arm at the branch junction
and thus generating ligatable nicked products from
5'-flap or replication fork substrates.
Length = 627
Score = 35.7 bits (82), Expect = 0.039
Identities = 26/154 (16%), Positives = 57/154 (37%), Gaps = 5/154 (3%)
Query: 30 EEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNK 89
++ E+ ++ + ++ ++ E + K +K++ KK K R+ K++ K
Sbjct: 33 DDFEEEENQRLQLRQVISRFTSFESDDQANSGNVSGKRVPKKKKIKKPKLRKRTKRKNKK 92
Query: 90 NKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRK 149
KS ++ E ++ + + K K + K+ KK K ++ E S
Sbjct: 93 IKSLTAFNEENFETDRAPSLLSYLS-GKQSKVNDILKRLESSKKIKNSRSSESTFETSAL 151
Query: 150 EEEEEEKKKKK----KKKKKKRTKKKEEEKRKNE 179
E+E K + K + K +
Sbjct: 152 YSEDEWIDIVKLIRLRFPKLSESDLKSLKNYIYG 185
Score = 34.9 bits (80), Expect = 0.081
Identities = 28/164 (17%), Positives = 60/164 (36%), Gaps = 10/164 (6%)
Query: 2 KNKKEEKKKKKKRRTKKKEK---NKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKR 58
+ ++++ +R ++ +S + + K+ KK K K K ++ KR
Sbjct: 30 GRLDDFEEEENQRLQLRQVISRFTSFESDDQANSGNVSGKR-VPKKKKIKKPKLRKRTKR 88
Query: 59 TKKKEKNKNKNRKEEKKKKKKRR-----TKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEK 113
KK K+ +E + + + K+ K + ++ E K+ + + E
Sbjct: 89 KNKKIKSLTAFNEENFETDRAPSLLSYLSGKQSKVNDILKRLESSKKIKNSRSSESTFET 148
Query: 114 NKNKSRKEEEEKKKEAEEKK-KKRTKKKEKNKNKSRKEEEEEEK 156
+ S E + K + K + KN E++EE
Sbjct: 149 SALYSEDEWIDIVKLIRLRFPKLSESDLKSLKNYIYGAEKQEES 192
Score = 29.2 bits (65), Expect = 4.7
Identities = 21/120 (17%), Positives = 47/120 (39%), Gaps = 11/120 (9%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKK-------KEKNKKNKNKSRKEEE 54
K K+ K +K+ +R KK K+ +E E R K+ + K + +
Sbjct: 75 KKIKKPKLRKRTKRKNKKIKSLTAFNEENFETDRAPSLLSYLSGKQSKVNDILKRLESSK 134
Query: 55 KKKRTKKKEKNKNK----NRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKN 110
K K ++ E + E K R + + +++ + + E++++++N
Sbjct: 135 KIKNSRSSESTFETSALYSEDEWIDIVKLIRLRFPKLSESDLKSLKNYIYGAEKQEESEN 194
>gnl|CDD|235971 PRK07219, PRK07219, DNA topoisomerase I; Validated.
Length = 822
Score = 35.7 bits (83), Expect = 0.044
Identities = 9/78 (11%), Positives = 19/78 (24%), Gaps = 2/78 (2%)
Query: 93 RKEEKKKEAEE--EKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKE 150
R + + K EK K + + E + + K K + +
Sbjct: 745 RVKGGFGDELGCCNNPKCNYTEKQKKEKESKSELEALKGVGAKTAEKLKDAGVETVTDLT 804
Query: 151 EEEEEKKKKKKKKKKKRT 168
+ + K
Sbjct: 805 AADPDAVAAKVDGVSADR 822
Score = 30.4 bits (69), Expect = 2.1
Identities = 10/56 (17%), Positives = 24/56 (42%)
Query: 134 KKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKAVRLTKLSA 189
++ KK++++K++ + K +K K T + A ++ +SA
Sbjct: 765 TEKQKKEKESKSELEALKGVGAKTAEKLKDAGVETVTDLTAADPDAVAAKVDGVSA 820
Score = 29.2 bits (66), Expect = 4.5
Identities = 11/79 (13%), Positives = 29/79 (36%), Gaps = 1/79 (1%)
Query: 35 RTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRK 94
R K ++ + K +K+ KK++++K++ + K K + +
Sbjct: 745 RVKGGFGDELGCCNNPKCNYTEKQ-KKEKESKSELEALKGVGAKTAEKLKDAGVETVTDL 803
Query: 95 EEKKKEAEEEKKKTKNKEK 113
+A K + ++
Sbjct: 804 TAADPDAVAAKVDGVSADR 822
Score = 28.8 bits (65), Expect = 7.1
Identities = 5/57 (8%), Positives = 13/57 (22%)
Query: 31 EEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEK 87
++ KK++++K + K K +
Sbjct: 763 NYTEKQKKEKESKSELEALKGVGAKTAEKLKDAGVETVTDLTAADPDAVAAKVDGVS 819
Score = 28.8 bits (65), Expect = 7.1
Identities = 8/58 (13%), Positives = 22/58 (37%)
Query: 79 KRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKR 136
+ KK++++K++ + EK K E + + + + + + R
Sbjct: 765 TEKQKKEKESKSELEALKGVGAKTAEKLKDAGVETVTDLTAADPDAVAAKVDGVSADR 822
>gnl|CDD|227468 COG5139, COG5139, Uncharacterized conserved protein [Function
unknown].
Length = 397
Score = 35.4 bits (81), Expect = 0.045
Identities = 22/169 (13%), Positives = 72/169 (42%)
Query: 16 TKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKK 75
T +K+ + E ++ ++ + ++ K + K+ + ++ ++ ++N N + ++
Sbjct: 20 TASSQKSTINAENENTKQNQSMEPQETSKGTSNDTKDPDNGEKNEEAAIDENSNVEAAER 79
Query: 76 KKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKK 135
K+K T + + + RK ++ + E +++ ++ +++ E + + K
Sbjct: 80 KRKHISTDFSDMSLLRKRKNDQSLQPTREPMDSRDSGQDFTEAQSGELGDTGDRQLKAPA 139
Query: 136 RTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKAVRL 184
++ + K + +E + KK+ + K+ E R ++
Sbjct: 140 ASRARRKEDLLEQTVDEISLRLKKRMQDAAKKDNANNLEGRPATGKIKN 188
Score = 30.1 bits (67), Expect = 2.1
Identities = 32/172 (18%), Positives = 67/172 (38%), Gaps = 10/172 (5%)
Query: 15 RTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEK 74
T +E+ K E+ ++K N +N+N + + + + T K N K +
Sbjct: 2 STADQEQPKVVEATPEDGTASSQKSTINAENENTKQNQSMEPQETSKGTSNDTK----DP 57
Query: 75 KKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKK 134
+K ++N N E K+K + K KN ++ + E
Sbjct: 58 DNGEKNEEAAIDENSNVEAAERKRKHISTDFSDMSLLRKRKN------DQSLQPTREPMD 111
Query: 135 KRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKAVRLTK 186
R ++ + +S + + +++ K + R K+ E+ +E ++RL K
Sbjct: 112 SRDSGQDFTEAQSGELGDTGDRQLKAPAASRARRKEDLLEQTVDEISLRLKK 163
>gnl|CDD|219124 pfam06658, DUF1168, Protein of unknown function (DUF1168). This
family consists of several hypothetical eukaryotic
proteins of unknown function.
Length = 142
Score = 33.9 bits (78), Expect = 0.047
Identities = 32/87 (36%), Positives = 57/87 (65%), Gaps = 3/87 (3%)
Query: 52 EEEKKKRTKKKE---KNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKT 108
+E+ KK T+ +E K + K RK+E+K KKR ++K+K K K +K+ KK +EEK+ +
Sbjct: 56 DEKWKKETEDEEFQQKREEKKRKDEEKTAKKRAKRQKKKQKKKKKKKAKKGNKKEEKEGS 115
Query: 109 KNKEKNKNKSRKEEEEKKKEAEEKKKK 135
K+ E++ ++ + EE+K++E E +K
Sbjct: 116 KSSEESSDEEEEGEEDKQEEPVEIMEK 142
Score = 31.9 bits (73), Expect = 0.23
Identities = 26/75 (34%), Positives = 49/75 (65%)
Query: 106 KKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKK 165
+ + +E + + E+ +K+ E EE ++KR +KK K++ K+ K+ + +KKK+KKKKKK
Sbjct: 42 RALRRREYERLELMDEKWKKETEDEEFQQKREEKKRKDEEKTAKKRAKRQKKKQKKKKKK 101
Query: 166 KRTKKKEEEKRKNEK 180
K K ++E+++ K
Sbjct: 102 KAKKGNKKEEKEGSK 116
Score = 29.6 bits (67), Expect = 1.6
Identities = 24/104 (23%), Positives = 63/104 (60%), Gaps = 3/104 (2%)
Query: 61 KKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRK 120
+ + + R E +K K+ T+ +E + ++EEKK++ EE+ K + K + K + +K
Sbjct: 42 RALRRREYERLELMDEKWKKETEDEEF---QQKREEKKRKDEEKTAKKRAKRQKKKQKKK 98
Query: 121 EEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKK 164
++++ KK ++++K+ +K E++ ++ + EE+++++ + +K
Sbjct: 99 KKKKAKKGNKKEEKEGSKSSEESSDEEEEGEEDKQEEPVEIMEK 142
Score = 28.9 bits (65), Expect = 2.4
Identities = 27/70 (38%), Positives = 46/70 (65%), Gaps = 3/70 (4%)
Query: 117 KSRKEEEEKKKEAEEKKKKRTKKKE---KNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEE 173
R+ E E+ + +EK KK T+ +E K + K RK+EE+ KK+ K++KKK++ KKK++
Sbjct: 43 ALRRREYERLELMDEKWKKETEDEEFQQKREEKKRKDEEKTAKKRAKRQKKKQKKKKKKK 102
Query: 174 EKRKNEKAVR 183
K+ N+K +
Sbjct: 103 AKKGNKKEEK 112
Score = 28.5 bits (64), Expect = 3.7
Identities = 21/79 (26%), Positives = 48/79 (60%)
Query: 111 KEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKK 170
KE + +++ EEKK++ EEK K+ K++K K K +K+++ ++ KK++K+ K +++
Sbjct: 61 KETEDEEFQQKREEKKRKDEEKTAKKRAKRQKKKQKKKKKKKAKKGNKKEEKEGSKSSEE 120
Query: 171 KEEEKRKNEKAVRLTKLSA 189
+E+ + E+ + +
Sbjct: 121 SSDEEEEGEEDKQEEPVEI 139
>gnl|CDD|129022 smart00786, SHR3_chaperone, ER membrane protein SH3. This family
of proteins are membrane localised chaperones that are
required for correct plasma membrane localisation of
amino acid permeases (AAPs). Shr3 prevents AAPs proteins
from aggregating and assists in their correct folding.
In the absence of Shr3, AAPs are retained in the ER.
Length = 196
Score = 34.7 bits (80), Expect = 0.051
Identities = 11/39 (28%), Positives = 22/39 (56%)
Query: 69 NRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKK 107
RK+ K+K++ ++KE ++K ++ E +KKK
Sbjct: 158 ERKDAKQKEEFAAEERKEALAAAAKKSATPQKVETKKKK 196
Score = 31.2 bits (71), Expect = 0.74
Identities = 10/39 (25%), Positives = 21/39 (53%)
Query: 3 NKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEK 41
+K+ K+K++ ++KE ++K +K KK+K
Sbjct: 158 ERKDAKQKEEFAAEERKEALAAAAKKSATPQKVETKKKK 196
Score = 30.0 bits (68), Expect = 1.4
Identities = 9/38 (23%), Positives = 24/38 (63%)
Query: 126 KKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKK 163
+K+A++K++ +++++ + K+ +K + KKKK
Sbjct: 159 RKDAKQKEEFAAEERKEALAAAAKKSATPQKVETKKKK 196
Score = 29.3 bits (66), Expect = 2.5
Identities = 11/39 (28%), Positives = 19/39 (48%)
Query: 82 TKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRK 120
+K K K + EE+K+ KK+ +K + K +K
Sbjct: 158 ERKDAKQKEEFAAEERKEALAAAAKKSATPQKVETKKKK 196
Score = 29.3 bits (66), Expect = 2.5
Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 6/45 (13%)
Query: 128 EAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKE 172
E ++ K+K E+ ++E KK +K TKKK+
Sbjct: 158 ERKDAKQKEEFAAEE------RKEALAAAAKKSATPQKVETKKKK 196
Score = 28.9 bits (65), Expect = 3.3
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 4/43 (9%)
Query: 104 EKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNK 146
E+K K KE+ EE ++ A KK +K E K K
Sbjct: 158 ERKDAKQKEEF----AAEERKEALAAAAKKSATPQKVETKKKK 196
Score = 28.9 bits (65), Expect = 4.3
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 3/42 (7%)
Query: 59 TKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKE 100
+K K K + EE+K+ KK + E KKK+
Sbjct: 158 ERKDAKQKEEFAAEERKEALAAAAKKSAT---PQKVETKKKK 196
Score = 28.5 bits (64), Expect = 4.6
Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 6/44 (13%)
Query: 119 RKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKK 162
RK+ ++K++ A E++K E ++K ++ + KKKK
Sbjct: 159 RKDAKQKEEFAAEERK------EALAAAAKKSATPQKVETKKKK 196
>gnl|CDD|227925 COG5638, COG5638, Uncharacterized conserved protein [Function
unknown].
Length = 622
Score = 35.5 bits (81), Expect = 0.051
Identities = 42/194 (21%), Positives = 81/194 (41%), Gaps = 11/194 (5%)
Query: 6 EEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKN 65
++K + + +K + + ++RKE + +K + + K+K +S ++ KK + +
Sbjct: 427 DDKLETTIEKLDRKLRERQENRKERQLKKTKDDSDVDLKDKKESINKKNKKGKHAIERTA 486
Query: 66 KNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEK 125
+K E K + + + K EK K+ + KKK N E+ K+
Sbjct: 487 ASKEELELIKADDEDDEQLDHFDMKSILKAEKFKKNRKLKKKASNLEEGFVFDPKDPRFV 546
Query: 126 K-----------KEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEE 174
E KK KK K K K E+ + K + K KKR +K ++
Sbjct: 547 AIFEDHNFAIDPTHPEFKKTGGMKKIMDEKRKRLKNNIEQTQDGKPELKIKKRKAEKGDQ 606
Query: 175 KRKNEKAVRLTKLS 188
+++ ++ V+ K S
Sbjct: 607 RQELDRIVKSIKRS 620
Score = 34.8 bits (79), Expect = 0.096
Identities = 38/187 (20%), Positives = 78/187 (41%), Gaps = 21/187 (11%)
Query: 6 EEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKN 65
+ +K ++R+ +KE+ K++ + + + + KK+ NKKNK E ++ E
Sbjct: 436 KLDRKLRERQENRKERQLKKTKDDSDVDLKDKKESINKKNKKGKHAIERTAASKEELELI 495
Query: 66 KNKNRKEE-------KKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKK----------- 107
K + +E K K + KK K K K+ E+ + + +
Sbjct: 496 KADDEDDEQLDHFDMKSILKAEKFKKNRKLKKKASNLEEGFVFDPKDPRFVAIFEDHNFA 555
Query: 108 ---TKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKK 164
T + K +K +EK+K + ++ K + K K RK E+ +++++ + K
Sbjct: 556 IDPTHPEFKKTGGMKKIMDEKRKRLKNNIEQTQDGKPELKIKKRKAEKGDQRQELDRIVK 615
Query: 165 KKRTKKK 171
+ K
Sbjct: 616 SIKRSGK 622
Score = 34.4 bits (78), Expect = 0.12
Identities = 24/108 (22%), Positives = 49/108 (45%), Gaps = 1/108 (0%)
Query: 65 NKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEE 124
+ K E +K R ++ + K R+ +K K+ + K K + NK K++K +
Sbjct: 423 ESESDDKLETTIEKLDRKLRERQENRKERQLKKTKDDSDVDLKDKKESINK-KNKKGKHA 481
Query: 125 KKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKE 172
++ A K++ K + ++ + + K +K KK ++ KKK
Sbjct: 482 IERTAASKEELELIKADDEDDEQLDHFDMKSILKAEKFKKNRKLKKKA 529
Score = 31.7 bits (71), Expect = 0.70
Identities = 23/108 (21%), Positives = 42/108 (38%), Gaps = 17/108 (15%)
Query: 45 NKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEE 104
K E ++ +K + + +NRKE + KK K + K+K +S ++ KK
Sbjct: 423 ESESDDKLETTIEKLDRKLRERQENRKERQLKKTKDDSDVDLKDKKESINKKNKKGKHAI 482
Query: 105 KKKTKNKEK-----------------NKNKSRKEEEEKKKEAEEKKKK 135
++ +KE+ + K E+ KK +KK
Sbjct: 483 ERTAASKEELELIKADDEDDEQLDHFDMKSILKAEKFKKNRKLKKKAS 530
>gnl|CDD|219924 pfam08597, eIF3_subunit, Translation initiation factor eIF3
subunit. This is a family of proteins which are
subunits of the eukaryotic translation initiation factor
3 (eIF3). In yeast it is called Hcr1. The Saccharomyces
cerevisiae protein eIF3j (HCR1) has been shown to be
required for processing of 20S pre-rRNA and binds to 18S
rRNA and eIF3 subunits Rpg1p and Prt1p.
Length = 242
Score = 35.0 bits (81), Expect = 0.052
Identities = 38/171 (22%), Positives = 72/171 (42%), Gaps = 3/171 (1%)
Query: 4 KKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKE 63
+KEE+K K + K K+ K K ++E+ ++ ++K + ++ E +K R +K +
Sbjct: 44 EKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLRELEEDTPEDELAEKLRLRKLQ 103
Query: 64 KNKNKNRKEE---KKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRK 120
+ + N + K + N KE+ ++ + KK E + + +
Sbjct: 104 EESDLNNAADLFGGPAPTKDTDLESLDLFNPKTKEDFEELRKALAKKLTKYESSPHYAGF 163
Query: 121 EEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKK 171
E+ + A + KK N E+ + EK K KKKK + K K
Sbjct: 164 LEDLIRDLAAPLSSEDIKKVSSTLNVLINEKLKAEKAAKGGKKKKGKAKAK 214
Score = 34.6 bits (80), Expect = 0.063
Identities = 18/55 (32%), Positives = 35/55 (63%)
Query: 121 EEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEK 175
+EEE +++ EEK K K K K K++ EE+E+ K++K++K ++ + E++
Sbjct: 38 DEEEDEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLRELEEDTPEDE 92
Score = 34.2 bits (79), Expect = 0.091
Identities = 20/68 (29%), Positives = 39/68 (57%)
Query: 94 KEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEE 153
K+ +E +EEK++ K K K K++K + K +E E+ K+++ +K + + E+E
Sbjct: 34 KDSWDEEEDEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLRELEEDTPEDEL 93
Query: 154 EEKKKKKK 161
EK + +K
Sbjct: 94 AEKLRLRK 101
Score = 30.8 bits (70), Expect = 1.1
Identities = 15/64 (23%), Positives = 33/64 (51%)
Query: 61 KKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRK 120
+ E+ + + K K K K+ K K + K K+++E+++K E ++ T E + +
Sbjct: 41 EDEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLRELEEDTPEDELAEKLRLR 100
Query: 121 EEEE 124
+ +E
Sbjct: 101 KLQE 104
Score = 30.4 bits (69), Expect = 1.4
Identities = 16/75 (21%), Positives = 39/75 (52%), Gaps = 7/75 (9%)
Query: 30 EEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNK 89
+EEE K++EK K + K + K K + K + + +K++K R +++ +
Sbjct: 38 DEEEDEEKEEEKAKV-------AAKAKAKKALKAKIEEKEKAKREKEEKGLRELEEDTPE 90
Query: 90 NKSRKEEKKKEAEEE 104
++ ++ + ++ +EE
Sbjct: 91 DELAEKLRLRKLQEE 105
Score = 28.5 bits (64), Expect = 5.2
Identities = 13/64 (20%), Positives = 30/64 (46%)
Query: 91 KSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKE 150
KEE+K + + K K + + K + EK+++ + ++ T + E + ++
Sbjct: 42 DEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLRELEEDTPEDELAEKLRLRK 101
Query: 151 EEEE 154
+EE
Sbjct: 102 LQEE 105
>gnl|CDD|202833 pfam03962, Mnd1, Mnd1 family. This family of proteins includes
MND1 from S. cerevisiae. The mnd1 protein forms a
complex with hop2 to promote homologous chromosome
pairing and meiotic double-strand break repair.
Length = 188
Score = 34.5 bits (80), Expect = 0.052
Identities = 20/73 (27%), Positives = 39/73 (53%)
Query: 109 KNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRT 168
++ NK K+R E+ +K+ E +++ + + + K R+E EE + ++ K+ +K
Sbjct: 60 PSQALNKLKTRLEKLKKELEELKQRIAELQAQIEKLKKGREETEERTELLEELKQLEKEL 119
Query: 169 KKKEEEKRKNEKA 181
KK + E K EK
Sbjct: 120 KKLKAELEKYEKN 132
Score = 28.4 bits (64), Expect = 5.4
Identities = 22/90 (24%), Positives = 45/90 (50%)
Query: 96 EKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEE 155
+ K E+ KK+ + ++ + + + E+ KK EE +++ +E + + ++ + E
Sbjct: 66 KLKTRLEKLKKELEELKQRIAELQAQIEKLKKGREETEERTELLEELKQLEKELKKLKAE 125
Query: 156 KKKKKKKKKKKRTKKKEEEKRKNEKAVRLT 185
+K +K ++ K KEE K E A R T
Sbjct: 126 LEKYEKNDPERIEKLKEETKVAKEAANRWT 155
Score = 28.0 bits (63), Expect = 6.5
Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 8/95 (8%)
Query: 71 KEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAE 130
+ K K + KKE + K R E + + E+ KK + E+ R E E+ K+ E
Sbjct: 62 QALNKLKTRLEKLKKELEELKQRIAELQAQIEKLKKGREETEE-----RTELLEELKQLE 116
Query: 131 EKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKK 165
++ KK + EK + + E EK K++ K K
Sbjct: 117 KELKKLKAELEK---YEKNDPERIEKLKEETKVAK 148
Score = 28.0 bits (63), Expect = 7.8
Identities = 21/85 (24%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 23 KNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRT 82
NK + E+ K+ ++ K + + +++ E+ KK R + +E+ + ++ +K+ K+
Sbjct: 64 LNKLKTRLEKLKKELEELKQRIAELQAQIEKLKKGREETEERTELLEELKQLEKELKKLK 123
Query: 83 KKKEK-NKNKSRKEEKKKEAEEEKK 106
+ EK KN + EK KE + K
Sbjct: 124 AELEKYEKNDPERIEKLKEETKVAK 148
Score = 27.6 bits (62), Expect = 8.6
Identities = 22/89 (24%), Positives = 45/89 (50%)
Query: 46 KNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEK 105
+++ + + + KKE + K R E + + ++ K +E+ + ++ E+ K+ E+E
Sbjct: 60 PSQALNKLKTRLEKLKKELEELKQRIAELQAQIEKLKKGREETEERTELLEELKQLEKEL 119
Query: 106 KKTKNKEKNKNKSRKEEEEKKKEAEEKKK 134
KK K + + K+ E EK KE + K
Sbjct: 120 KKLKAELEKYEKNDPERIEKLKEETKVAK 148
>gnl|CDD|215278 PLN02502, PLN02502, lysyl-tRNA synthetase.
Length = 553
Score = 35.4 bits (82), Expect = 0.055
Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Query: 121 EEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNE- 179
E + ++ KKR K K+ + K+ KEE + K + +++ ++E
Sbjct: 1 AESNGEPLSKNALKKRLKAKQAEEEKAAKEEAKAAAAAAAAKGRSRKSAAADDETMDPTQ 60
Query: 180 -KAVRLTKLSA 189
+A RL K+ A
Sbjct: 61 YRANRLKKVEA 71
Score = 35.0 bits (81), Expect = 0.067
Identities = 13/55 (23%), Positives = 23/55 (41%)
Query: 100 EAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEE 154
+ +KN K + K+++ EEEK + E K + KS ++E
Sbjct: 1 AESNGEPLSKNALKKRLKAKQAEEEKAAKEEAKAAAAAAAAKGRSRKSAAADDET 55
Score = 33.4 bits (77), Expect = 0.23
Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 6/72 (8%)
Query: 75 KKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKK 134
K K+R K K+ + K+ KEE K + KS ++E + + +
Sbjct: 10 KNALKKRLKAKQAEEEKAAKEEAKA-----AAAAAAAKGRSRKSAAADDE-TMDPTQYRA 63
Query: 135 KRTKKKEKNKNK 146
R KK E + K
Sbjct: 64 NRLKKVEALRAK 75
Score = 31.1 bits (71), Expect = 1.1
Identities = 13/57 (22%), Positives = 22/57 (38%)
Query: 103 EEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKK 159
KK+ K K+ + K+ KEE + A K + K + + + KK
Sbjct: 12 ALKKRLKAKQAEEEKAAKEEAKAAAAAAAAKGRSRKSAAADDETMDPTQYRANRLKK 68
Score = 30.7 bits (70), Expect = 1.6
Identities = 19/77 (24%), Positives = 29/77 (37%), Gaps = 10/77 (12%)
Query: 54 EKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEK 113
KKR K K+ + K KEE K K K+ + +E T+ +
Sbjct: 12 ALKKRLKAKQAEEEKAAKEEAKAAAAAAAAKGRSRKSAA-------ADDETMDPTQYRA- 63
Query: 114 NKNKSRKEEEEKKKEAE 130
N+ +K E + K E
Sbjct: 64 --NRLKKVEALRAKGVE 78
Score = 29.6 bits (67), Expect = 3.1
Identities = 12/46 (26%), Positives = 21/46 (45%)
Query: 9 KKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEE 54
K K+R K K+ + K+ KEE + K + K+ + +E
Sbjct: 10 KNALKKRLKAKQAEEEKAAKEEAKAAAAAAAAKGRSRKSAAADDET 55
>gnl|CDD|221185 pfam11719, Drc1-Sld2, DNA replication and checkpoint protein.
Genome duplication is precisely regulated by
cyclin-dependent kinases CDKs, which bring about the
onset of S phase by activating replication origins and
then prevent relicensing of origins until mitosis is
completed. The optimum sequence motif for CDK
phosphorylation is S/T-P-K/R-K/R, and Drc1-Sld2 is found
to have at least 11 potential phosphorylation sites.
Drc1 is required for DNA synthesis and S-M replication
checkpoint control. Drc1 associates with Cdc2 and is
phosphorylated at the onset of S phase when Cdc2 is
activated. Thus Cdc2 promotes DNA replication by
phosphorylating Drc1 and regulating its association with
Cut5. Sld2 and Sld3 represent the minimal set of S-CDK
substrates required for DNA replication.
Length = 397
Score = 35.2 bits (81), Expect = 0.058
Identities = 28/120 (23%), Positives = 48/120 (40%), Gaps = 20/120 (16%)
Query: 8 KKKKKKRRTKK--------KEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRT 59
KKK +KR T++ K ++ + + E+ K EK+ ++
Sbjct: 285 KKKGQKRTTRRVKMRPVRAKPSDEPSLPESDIHEEIPKLDEKSLSEFLGYMGGIDEDDED 344
Query: 60 KKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSR 119
+ E++K + K++K KKK R+ K + N R K +NK K K R
Sbjct: 345 EDDEESKEEVEKKQKVKKKPRKRKVNPVSNNFRR------------LKLRNKRKKGFKGR 392
Score = 32.8 bits (75), Expect = 0.27
Identities = 18/90 (20%), Positives = 42/90 (46%)
Query: 80 RRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKK 139
RR KK+ K +R+ + + + + E + ++ + +EK +
Sbjct: 281 RRVFKKKGQKRTTRRVKMRPVRAKPSDEPSLPESDIHEEIPKLDEKSLSEFLGYMGGIDE 340
Query: 140 KEKNKNKSRKEEEEEEKKKKKKKKKKKRTK 169
+++++ +EE E+K+K KKK +K++
Sbjct: 341 DDEDEDDEESKEEVEKKQKVKKKPRKRKVN 370
>gnl|CDD|233496 TIGR01622, SF-CC1, splicing factor, CC1-like family. This model
represents a subfamily of RNA splicing factors including
the Pad-1 protein (N. crassa), CAPER (M. musculus) and
CC1.3 (H.sapiens). These proteins are characterized by
an N-terminal arginine-rich, low complexity domain
followed by three (or in the case of 4 H. sapiens
paralogs, two) RNA recognition domains (rrm: pfam00706).
These splicing factors are closely related to the U2AF
splicing factor family (TIGR01642). A homologous gene
from Plasmodium falciparum was identified in the course
of the analysis of that genome at TIGR and was included
in the seed.
Length = 457
Score = 35.3 bits (81), Expect = 0.059
Identities = 8/86 (9%), Positives = 32/86 (37%), Gaps = 3/86 (3%)
Query: 25 KSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRK---EEKKKKKKRR 81
+ R E R + +K + R+ + + ++++++ + R+ + + R
Sbjct: 1 RYRDRERGRLRNDTRRSDKGRERSRRRSRSRDRSRRRRDRDYYRGRRGRSRSRSPNRYYR 60
Query: 82 TKKKEKNKNKSRKEEKKKEAEEEKKK 107
+ + R+ + + + +
Sbjct: 61 PRGDRSYRRDDRRSGRNTKEPLTEAE 86
Score = 34.1 bits (78), Expect = 0.14
Identities = 10/87 (11%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 13 KRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSR-KEEEKKKRTKKKEKNKNKNRK 71
+ R +++ + +N +R+ ++ +R++++ +++ + R ++ + +R + + ++ N+ +
Sbjct: 1 RYRDRERGRLRNDTRRSDKGRERSRRRSRSRDRSRRRRDRDYYRGRRGRSRSRSPNRYYR 60
Query: 72 EEKKKKKKRRTKKKEKNKNKSRKEEKK 98
+ +R ++ +N + E ++
Sbjct: 61 PRGDRSYRRDDRRSGRNTKEPLTEAER 87
Score = 34.1 bits (78), Expect = 0.14
Identities = 11/90 (12%), Positives = 39/90 (43%), Gaps = 1/90 (1%)
Query: 48 KSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKK 107
+ R+ + T++ +K + ++R+ + + + RR + ++ + + + + + +
Sbjct: 3 RDRERGRLRNDTRRSDKGRERSRRRSRSRDRSRRRRDRDYYRGRRGRSRSRSPNRYYRPR 62
Query: 108 TKNKEKNKNKSRKEEEEKKKEAEEKKKKRT 137
+ ++ R K+ E ++ RT
Sbjct: 63 GDRSYRRDDR-RSGRNTKEPLTEAERDDRT 91
Score = 33.3 bits (76), Expect = 0.20
Identities = 12/102 (11%), Positives = 48/102 (47%), Gaps = 15/102 (14%)
Query: 56 KKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNK 115
+ R +++ + +N R+ +K +++ RR + +++++SR+ + + +++++ N+
Sbjct: 1 RYRDRERGRLRNDTRRSDKGRERSRR---RSRSRDRSRRRRDRDYYRGRRGRSRSRSPNR 57
Query: 116 NKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKK 157
+ + ++ ++ ++ KE E ++
Sbjct: 58 YYRPRG------------DRSYRRDDRRSGRNTKEPLTEAER 87
Score = 32.9 bits (75), Expect = 0.27
Identities = 8/94 (8%), Positives = 44/94 (46%), Gaps = 7/94 (7%)
Query: 83 KKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEK 142
+ +++ + + R + ++ + E+ + + +++++SR+ + + +R + + +
Sbjct: 1 RYRDRERGRLRNDTRRSDKGRERSR--RRSRSRDRSRRRRDRDY-----YRGRRGRSRSR 53
Query: 143 NKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKR 176
+ N+ + + ++ ++ + + E +R
Sbjct: 54 SPNRYYRPRGDRSYRRDDRRSGRNTKEPLTEAER 87
Score = 32.9 bits (75), Expect = 0.29
Identities = 9/79 (11%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 5 KEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEK 64
+ K + R++++ +++++SR+ + + ++ +++ + ++ ++
Sbjct: 13 DTRRSDKGRERSRRRSRSRDRSRRRRDRDYYRGRRGRSRSRSPNRYYRPRGDRSYRRDDR 72
Query: 65 NKNKNRKEE-KKKKKKRRT 82
+N KE + ++ RT
Sbjct: 73 RSGRNTKEPLTEAERDDRT 91
>gnl|CDD|227931 COG5644, COG5644, Uncharacterized conserved protein [Function
unknown].
Length = 869
Score = 35.4 bits (81), Expect = 0.060
Identities = 24/122 (19%), Positives = 53/122 (43%)
Query: 17 KKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKK 76
++++ K +++ + +K ++ + ++ E K E +N N ++K
Sbjct: 582 QRRKLAPRKRKEDFVTPSTSLEKSMDRILHGQKKRAEGAVVFEKPLEATENFNPWLDRKM 641
Query: 77 KKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKR 136
++ +R KKK + + K KKK EEE + + K + + KE E + ++
Sbjct: 642 RRIKRIKKKAYRRIRRDKRLKKKMPEEENTQENHLGSEKKRHGGVPDILLKEIEVEDDEK 701
Query: 137 TK 138
T
Sbjct: 702 TP 703
Score = 29.7 bits (66), Expect = 3.2
Identities = 17/106 (16%), Positives = 40/106 (37%), Gaps = 1/106 (0%)
Query: 56 KKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNK 115
++R K + + ++ +K + K ++ ++ E + K
Sbjct: 581 EQRRKLAPRKRKEDFVTPSTSLEKSMDRILHGQKKRAEGAVVFEKPLEATENFNPWLDRK 640
Query: 116 NKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKK 161
+ R + +KK ++ KR KKK + +++ EKK+
Sbjct: 641 MR-RIKRIKKKAYRRIRRDKRLKKKMPEEENTQENHLGSEKKRHGG 685
>gnl|CDD|234229 TIGR03490, Mycoplas_LppA, mycoides cluster lipoprotein, LppA/P72
family. Members of this protein family occur in
Mycoplasma mycoides, Mycoplasma hyopneumoniae, and
related Mycoplasmas in small paralogous families that
may also include truncated forms and/or pseudogenes.
Members are predicted lipoproteins with a conserved
signal peptidase II processing and lipid attachment
site. Note that the name for certain characterized
members, p72, reflects an anomalous apparent molecular
weight, given a theoretical MW of about 61 kDa.
Length = 541
Score = 35.2 bits (81), Expect = 0.065
Identities = 19/81 (23%), Positives = 39/81 (48%)
Query: 74 KKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKK 133
K+ +KK K E +K + K+ +E K+ N+ K++ EKK + + K
Sbjct: 32 KQPEKKPEIKPNENTPKIPKKPDNKEPSENNNNKSNNENKDEENPSSTNPEKKPDPSKNK 91
Query: 134 KKRTKKKEKNKNKSRKEEEEE 154
++ K K++ K +K + ++
Sbjct: 92 EEIEKPKDEPKKPDKKPQADQ 112
Score = 33.7 bits (77), Expect = 0.18
Identities = 20/84 (23%), Positives = 37/84 (44%)
Query: 1 CKNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTK 60
C K+ +K+ K +N K K+ + ++ ++ N+NK + K
Sbjct: 24 CSTTSSNSKQPEKKPEIKPNENTPKIPKKPDNKEPSENNNNKSNNENKDEENPSSTNPEK 83
Query: 61 KKEKNKNKNRKEEKKKKKKRRTKK 84
K + +KNK E+ K + K+ KK
Sbjct: 84 KPDPSKNKEEIEKPKDEPKKPDKK 107
Score = 28.6 bits (64), Expect = 7.9
Identities = 18/78 (23%), Positives = 38/78 (48%)
Query: 103 EEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKK 162
E+K + K E +K + ++ E K K E+N + + E++ + K K++
Sbjct: 35 EKKPEIKPNENTPKIPKKPDNKEPSENNNNKSNNENKDEENPSSTNPEKKPDPSKNKEEI 94
Query: 163 KKKKRTKKKEEEKRKNEK 180
+K K KK ++K + ++
Sbjct: 95 EKPKDEPKKPDKKPQADQ 112
>gnl|CDD|218636 pfam05557, MAD, Mitotic checkpoint protein. This family consists
of several eukaryotic mitotic checkpoint (Mitotic arrest
deficient or MAD) proteins. The mitotic spindle
checkpoint monitors proper attachment of the bipolar
spindle to the kinetochores of aligned sister chromatids
and causes a cell cycle arrest in prometaphase when
failures occur. Multiple components of the mitotic
spindle checkpoint have been identified in yeast and
higher eukaryotes. In S.cerevisiae, the existence of a
Mad1-dependent complex containing Mad2, Mad3, Bub3 and
Cdc20 has been demonstrated.
Length = 722
Score = 35.3 bits (81), Expect = 0.069
Identities = 36/196 (18%), Positives = 78/196 (39%), Gaps = 12/196 (6%)
Query: 3 NKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKK 62
+ E +K+ + + + + K+ E +R + + + K+ +E EKK +
Sbjct: 72 QLENELMQKELEHKRAQIELERKASTLAENYERELDRNLELEVRLKALEELEKKAENEAA 131
Query: 63 EKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEK------KKEAEEEKKKTKNKEKNKN 116
E + K K + K + K KE K K + E + + +N +
Sbjct: 132 EAE---EEAKLLKDKLDAESLKLQNEKEDQLKEAKESISRIKNDLSEMQCRAQNADTELK 188
Query: 117 KSRKEEEEKKKEAEEKKKKRT---KKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEE 173
E EE +++ EE +K+ KK + ++ + K K +++ K+ + E
Sbjct: 189 LLESELEELREQLEECQKELAEAEKKLQSLTSEQASSADNSVKIKHLEEELKRYEQDAEV 248
Query: 174 EKRKNEKAVRLTKLSA 189
K E+ +++ +L
Sbjct: 249 VKSMKEQLLQIPELER 264
Score = 33.0 bits (75), Expect = 0.28
Identities = 39/188 (20%), Positives = 83/188 (44%), Gaps = 18/188 (9%)
Query: 18 KKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKK 77
+K+ ++ + + E R+K K +N+ ++ E K+ + + + K E++
Sbjct: 48 QKQVEESMTLLQRAELIRSKSKLIQLENELMQKELEHKRAQIELERKASTLAENYERELD 107
Query: 78 KKRRTKKKEKNKNKSRKEEKKK--EAEEEKKKTKNK-EKNKNKSRKEEEEKKKEAEE--- 131
+ + + K + K+ + + EAEEE K K+K + K + E+E++ KEA+E
Sbjct: 108 RNLELEVRLKALEELEKKAENEAAEAEEEAKLLKDKLDAESLKLQNEKEDQLKEAKESIS 167
Query: 132 -------KKKKRTKKKEKNKNKSRKEEEE-----EEKKKKKKKKKKKRTKKKEEEKRKNE 179
+ + R + + E EE EE +K+ + +KK E+ +
Sbjct: 168 RIKNDLSEMQCRAQNADTELKLLESELEELREQLEECQKELAEAEKKLQSLTSEQASSAD 227
Query: 180 KAVRLTKL 187
+V++ L
Sbjct: 228 NSVKIKHL 235
>gnl|CDD|226138 COG3611, DnaB, Replication initiation/membrane attachment protein
[DNA replication, recombination, and repair].
Length = 417
Score = 34.7 bits (80), Expect = 0.076
Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 1/93 (1%)
Query: 44 KNKNKSRKEEEKK-KRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAE 102
KN +K K+ K ++K K ++ +K+K K+++ RKE K +
Sbjct: 325 KNDSKLNKKYILKIANDWARKKVKTAYEAIKENRKRKELALAKKQSSTTKRKENLPKWSN 384
Query: 103 EEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKK 135
E KKT ++E+ + EE K+ K+K+
Sbjct: 385 PEYKKTTSQEEQAKLEFIKLEELKRLENGKQKR 417
Score = 33.1 bits (76), Expect = 0.27
Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Query: 87 KNKNKSRKEEKKKEAEE-EKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKN 145
KN +K K+ K A + +KK K + ++RK +E + + KR + K N
Sbjct: 325 KNDSKLNKKYILKIANDWARKKVKTAYEAIKENRKRKELALAKKQSSTTKRKENLPKWSN 384
Query: 146 KSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRK 177
K+ +E++ K + K + K+ E K+K
Sbjct: 385 PEYKKTTSQEEQAKLEFIKLEELKRLENGKQK 416
Score = 30.4 bits (69), Expect = 2.0
Identities = 24/100 (24%), Positives = 42/100 (42%), Gaps = 6/100 (6%)
Query: 65 NKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEE 124
KN ++ +K K ++K K E KE + K+ K+++ RKE
Sbjct: 324 LKNDSKLNKKYILKIANDWARKKVKTA---YEAIKENRKRKELALAKKQSSTTKRKENLP 380
Query: 125 KKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKK 164
K E KK T +E+ + EE ++ + K+K+
Sbjct: 381 KWSNPEYKK---TTSQEEQAKLEFIKLEELKRLENGKQKR 417
Score = 29.7 bits (67), Expect = 2.9
Identities = 16/74 (21%), Positives = 30/74 (40%)
Query: 18 KKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKK 77
++K K +E KR + K++ RKE K + +K ++ + + +
Sbjct: 343 ARKKVKTAYEAIKENRKRKELALAKKQSSTTKRKENLPKWSNPEYKKTTSQEEQAKLEFI 402
Query: 78 KKRRTKKKEKNKNK 91
K K+ E K K
Sbjct: 403 KLEELKRLENGKQK 416
>gnl|CDD|183610 PRK12585, PRK12585, putative monovalent cation/H+ antiporter
subunit G; Reviewed.
Length = 197
Score = 33.9 bits (77), Expect = 0.080
Identities = 18/87 (20%), Positives = 50/87 (57%)
Query: 70 RKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEA 129
+K++ KKKK ++++ K + +EE ++ E E+++ K E+ + ++ E E++
Sbjct: 111 KKDDIKKKKSLIIRQEQIEKARQEREELEERMEWERREEKIDEREDQEEQEREREEQTIE 170
Query: 130 EEKKKKRTKKKEKNKNKSRKEEEEEEK 156
E+ + E++++++ ++++ EK
Sbjct: 171 EQSDDSEHEIIEQDESETESDDDKTEK 197
Score = 31.2 bits (70), Expect = 0.72
Identities = 16/69 (23%), Positives = 41/69 (59%)
Query: 4 KKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKE 63
KK++ KKKK ++++ K + +EE EE+ ++ + K ++ + ++E+E+++ + E
Sbjct: 111 KKDDIKKKKSLIIRQEQIEKARQEREELEERMEWERREEKIDEREDQEEQEREREEQTIE 170
Query: 64 KNKNKNRKE 72
+ + + E
Sbjct: 171 EQSDDSEHE 179
Score = 30.4 bits (68), Expect = 1.0
Identities = 20/94 (21%), Positives = 52/94 (55%), Gaps = 3/94 (3%)
Query: 76 KKKKRRTKKKEKNKNKS---RKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEK 132
+ + R KK + K KS R+E+ +K +E ++ + E + + + +E E ++E E +
Sbjct: 104 RDQLRSVKKDDIKKKKSLIIRQEQIEKARQEREELEERMEWERREEKIDEREDQEEQERE 163
Query: 133 KKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKK 166
++++T +++ + ++ E++E + + K +K
Sbjct: 164 REEQTIEEQSDDSEHEIIEQDESETESDDDKTEK 197
Score = 30.0 bits (67), Expect = 1.8
Identities = 15/69 (21%), Positives = 42/69 (60%)
Query: 106 KKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKK 165
KK K+K R+E+ EK ++ E+ ++R + + + + +E++EE++++++++ +
Sbjct: 111 KKDDIKKKKSLIIRQEQIEKARQEREELEERMEWERREEKIDEREDQEEQEREREEQTIE 170
Query: 166 KRTKKKEEE 174
+++ E E
Sbjct: 171 EQSDDSEHE 179
Score = 28.9 bits (64), Expect = 4.4
Identities = 22/94 (23%), Positives = 48/94 (51%), Gaps = 2/94 (2%)
Query: 71 KEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNK--SRKEEEEKKKE 128
+++ + KK KKK+ + + EK ++ EE ++ E+ + K R+++EE+++E
Sbjct: 104 RDQLRSVKKDDIKKKKSLIIRQEQIEKARQEREELEERMEWERREEKIDEREDQEEQERE 163
Query: 129 AEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKK 162
EE+ + +++ + E E E K +K
Sbjct: 164 REEQTIEEQSDDSEHEIIEQDESETESDDDKTEK 197
Score = 28.9 bits (64), Expect = 4.4
Identities = 16/59 (27%), Positives = 38/59 (64%), Gaps = 3/59 (5%)
Query: 127 KEAEEKKKKRTKKKEKNKNKSRKEEEEEEKK---KKKKKKKKKRTKKKEEEKRKNEKAV 182
K+ + KKKK +++ K+R+E EE E++ +++++K +R ++E+E+ + E+ +
Sbjct: 111 KKDDIKKKKSLIIRQEQIEKARQEREELEERMEWERREEKIDEREDQEEQEREREEQTI 169
Score = 28.1 bits (62), Expect = 7.7
Identities = 15/82 (18%), Positives = 45/82 (54%)
Query: 98 KKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKK 157
KK+ ++KK +++ K+R+E EE ++ E ++++ + +++ + +E EE+ +
Sbjct: 111 KKDDIKKKKSLIIRQEQIEKARQEREELEERMEWERREEKIDEREDQEEQEREREEQTIE 170
Query: 158 KKKKKKKKKRTKKKEEEKRKNE 179
++ + + ++ E E ++
Sbjct: 171 EQSDDSEHEIIEQDESETESDD 192
>gnl|CDD|219868 pfam08496, Peptidase_S49_N, Peptidase family S49 N-terminal. This
domain is found to the N-terminus of bacterial signal
peptidases of the S49 family (pfam01343).
Length = 154
Score = 33.7 bits (78), Expect = 0.080
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 94 KEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKK 127
K+E K + EKK K K K + K K+EE K +
Sbjct: 65 KKELKAWEKAEKKAEKAKAKAEKKKAKKEEPKPR 98
Score = 32.9 bits (76), Expect = 0.11
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 146 KSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRK 177
K K E+ EKK +K K K ++ K K+EE +
Sbjct: 66 KELKAWEKAEKKAEKAKAKAEKKKAKKEEPKP 97
Score = 31.7 bits (73), Expect = 0.30
Identities = 18/65 (27%), Positives = 30/65 (46%)
Query: 25 KSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKK 84
K + ++ E + T E+ K K KK K EK + K K + K +KK+ K+
Sbjct: 34 KKKGKKGELEITDLNEEYKDLKESLEAALLDKKELKAWEKAEKKAEKAKAKAEKKKAKKE 93
Query: 85 KEKNK 89
+ K +
Sbjct: 94 EPKPR 98
Score = 31.3 bits (72), Expect = 0.48
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 37 KKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEE 96
+K+K KK + + E+ K K+ + ++KE K +K KK EK K K+ K++
Sbjct: 32 AQKKKGKKGELEITDLNEEYKDLKESLEAALLDKKELKAWEKAE--KKAEKAKAKAEKKK 89
Query: 97 KKKEAEE 103
KKE +
Sbjct: 90 AKKEEPK 96
Score = 31.0 bits (71), Expect = 0.62
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 134 KKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKR 167
KK K EK + K+ K + + EKKK KK++ K R
Sbjct: 65 KKELKAWEKAEKKAEKAKAKAEKKKAKKEEPKPR 98
Score = 30.2 bits (69), Expect = 1.1
Identities = 15/65 (23%), Positives = 31/65 (47%), Gaps = 13/65 (20%)
Query: 132 KKKKRTKKKE-------------KNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKN 178
+KK+ KK E K ++ +++E K +K +KK ++ K K E+K+
Sbjct: 32 AQKKKGKKGELEITDLNEEYKDLKESLEAALLDKKELKAWEKAEKKAEKAKAKAEKKKAK 91
Query: 179 EKAVR 183
++ +
Sbjct: 92 KEEPK 96
Score = 29.4 bits (67), Expect = 2.2
Identities = 18/67 (26%), Positives = 32/67 (47%)
Query: 14 RRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEE 73
+ KK +K + + EE K K+ + K K EK ++ +K K K + +K +
Sbjct: 32 AQKKKGKKGELEITDLNEEYKDLKESLEAALLDKKELKAWEKAEKKAEKAKAKAEKKKAK 91
Query: 74 KKKKKKR 80
K++ K R
Sbjct: 92 KEEPKPR 98
Score = 28.6 bits (65), Expect = 3.2
Identities = 18/66 (27%), Positives = 33/66 (50%)
Query: 70 RKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEA 129
+K++ KK + T E+ K+ E ++E K + EK K++ + E+KK +
Sbjct: 33 QKKKGKKGELEITDLNEEYKDLKESLEAALLDKKELKAWEKAEKKAEKAKAKAEKKKAKK 92
Query: 130 EEKKKK 135
EE K +
Sbjct: 93 EEPKPR 98
Score = 28.6 bits (65), Expect = 3.2
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 4 KKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKR 35
K EK +KK K K K + K K+EE + R
Sbjct: 69 KAWEKAEKKAE--KAKAKAEKKKAKKEEPKPR 98
Score = 28.3 bits (64), Expect = 4.6
Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 5 KEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKK 39
K+E K +K KK EK K K+ K++ +++ K +
Sbjct: 65 KKELKAWEKAE-KKAEKAKAKAEKKKAKKEEPKPR 98
Score = 27.9 bits (63), Expect = 6.3
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 48 KSRKEEEKKKRTKKKE-KNKNKNRKEEKKKKKKRRTKKKEKNKNKSR 93
K KE + KKE K K K+ +K K K KK +K + K R
Sbjct: 52 KDLKESLEAALLDKKELKAWEKAEKKAEKAKAKAEKKKAKKEEPKPR 98
>gnl|CDD|233787 TIGR02223, ftsN, cell division protein FtsN. FtsN is a poorly
conserved protein active in cell division in a number of
Proteobacteria. The N-terminal 30 residue region tends
to by Lys/Arg-rich, and is followed by a
membrane-spanning region. This is followed by an acidic
low-complexity region of variable length and a
well-conserved C-terminal domain of two tandem regions
matched by pfam05036 (Sporulation related repeat), found
in several cell division and sporulation proteins. The
role of FtsN as a suppressor for other cell division
mutations is poorly understood; it may involve cell wall
hydrolysis [Cellular processes, Cell division].
Length = 298
Score = 34.7 bits (79), Expect = 0.080
Identities = 25/158 (15%), Positives = 64/158 (40%), Gaps = 1/158 (0%)
Query: 24 NKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTK 83
+K E E + + E + + K EE+ ++ E + E+ +
Sbjct: 51 SKQANEPETLQPKNQTENGETAADLPPKPEERWSYIEELEAREVLINDPEEPSNGGG-VE 109
Query: 84 KKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKN 143
+ + + R+ ++ +A+ + ++ E K+ ++ +K RT + +K
Sbjct: 110 ESAQLTAEQRQLLEQMQADMRAAEKVLATAPSEQTVAVEARKQTAEKKPQKARTAEAQKT 169
Query: 144 KNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKA 181
++ K + ++ K+K+K K+T + + + E A
Sbjct: 170 PVETEKIASKVKEAKQKQKALPKQTAETQSNSKPIETA 207
Score = 33.9 bits (77), Expect = 0.11
Identities = 31/174 (17%), Positives = 65/174 (37%), Gaps = 2/174 (1%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKK 61
K E + + K +T+ E + K EE ++ E + N + +
Sbjct: 52 KQANEPETLQPKNQTENGETAADLPPKPEERWSYIEELEAREVLINDPEEPSNGGGVEES 111
Query: 62 KEKNKNKNRKEEKKKKKKR--RTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSR 119
+ + + E+ + R ++ E +K+ E+K + + +
Sbjct: 112 AQLTAEQRQLLEQMQADMRAAEKVLATAPSEQTVAVEARKQTAEKKPQKARTAEAQKTPV 171
Query: 120 KEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEE 173
+ E+ K E K+K++ K+ + +S + E K K K K + K+K E
Sbjct: 172 ETEKIASKVKEAKQKQKALPKQTAETQSNSKPIETAPKADKADKTKPKPKEKAE 225
Score = 31.2 bits (70), Expect = 1.0
Identities = 27/167 (16%), Positives = 61/167 (36%), Gaps = 2/167 (1%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKK 61
KN+ E + K +E+ + E E E+ + ++ +
Sbjct: 63 KNQTENGETAADLPPKPEERWS-YIEELEAREVLINDPEEPSNGGGVEESAQLTAEQRQL 121
Query: 62 KEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKE 121
E+ + R EK + + + + EKK + + K + + + K
Sbjct: 122 LEQMQADMRAAEKVLATAPSE-QTVAVEARKQTAEKKPQKARTAEAQKTPVETEKIASKV 180
Query: 122 EEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRT 168
+E K+K+ K+ + ++ + ++ +K K K K+K +R
Sbjct: 181 KEAKQKQKALPKQTAETQSNSKPIETAPKADKADKTKPKPKEKAERA 227
>gnl|CDD|215591 PLN03124, PLN03124, poly [ADP-ribose] polymerase; Provisional.
Length = 643
Score = 34.8 bits (80), Expect = 0.085
Identities = 25/126 (19%), Positives = 44/126 (34%), Gaps = 5/126 (3%)
Query: 44 KNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEK-----K 98
K R ++ + K K+ K+ KK+++++ E K ++
Sbjct: 25 KAALVRRLDDAIAEDAKTASKSGTKSSAGRKKRRERQDDGDDEPVSPKRIAIDEVKGMTV 84
Query: 99 KEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKK 158
+E E + + K E E++ K E K K EE E+E+K
Sbjct: 85 RELREAASERGLATTGRKKDLLERLCAALESDVKVGSANGTGEDEKEKGGDEEREKEEKI 144
Query: 159 KKKKKK 164
KK
Sbjct: 145 VTATKK 150
Score = 30.6 bits (69), Expect = 1.6
Identities = 24/125 (19%), Positives = 48/125 (38%), Gaps = 14/125 (11%)
Query: 63 EKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRK-E 121
E K ++ K +++ ++++ + + K+ +E K T + + R
Sbjct: 38 EDAKTASKSGTKSSAGRKKRRERQDDGDDEPVSPKRIAIDEVKGMTVRELREAASERGLA 97
Query: 122 EEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKA 181
+KK+ E+ + K + + E+E+EK EE+ K EK
Sbjct: 98 TTGRKKDLLERLCAALESDVKVGSANGTGEDEKEKGGD-------------EEREKEEKI 144
Query: 182 VRLTK 186
V TK
Sbjct: 145 VTATK 149
Score = 28.7 bits (64), Expect = 7.9
Identities = 18/105 (17%), Positives = 35/105 (33%), Gaps = 8/105 (7%)
Query: 5 KEEKKKKKKRRTKKKEKNKNKSR----KEEEEEKRTKKKEKNKKNKNKSRKEEEKKK--- 57
++ K K + K + R +E + ++ K + +E ++
Sbjct: 38 EDAKTASKSGTKSSAGRKKRRERQDDGDDEPVSPKRIAIDEVKGMTVRELREAASERGLA 97
Query: 58 -RTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEA 101
+KK+ + E K E K K EE++KE
Sbjct: 98 TTGRKKDLLERLCAALESDVKVGSANGTGEDEKEKGGDEEREKEE 142
>gnl|CDD|237855 PRK14900, valS, valyl-tRNA synthetase; Provisional.
Length = 1052
Score = 35.0 bits (80), Expect = 0.088
Identities = 37/172 (21%), Positives = 64/172 (37%), Gaps = 23/172 (13%)
Query: 23 KNKSRKEEEEEKRTKKK---------EKNKKNKNKSRKEEEKK----KRTKKKEKNKNKN 69
K+++R EE EKR K + E N ++ + E+K + + +
Sbjct: 881 KDRARAEELREKRGKLEAHRAMLSGSEANSARRDTMEIQNEQKPTQDGPAAEAQPAQENT 940
Query: 70 RKEEKKKKKKRRTKKKEKNKN-------KSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEE 122
E +K ++ ++ K + +K KK + K K K+
Sbjct: 941 VVESAEKAVAAVSEAAQQAATAVASGIEKVAEAVRKTVRRSVKKAAATRAAMKKKVAKKA 1000
Query: 123 EEKKKEAEE--KKKKRTKKKEKNKNKSRKEEEEEEKKK-KKKKKKKKRTKKK 171
KK A++ KK KKK K ++K + KK KK +K +K
Sbjct: 1001 PAKKAAAKKAAAKKAAAKKKVAKKAPAKKVARKPAAKKAAKKPARKAAGRKA 1052
Score = 31.5 bits (71), Expect = 0.98
Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 3/88 (3%)
Query: 7 EKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNK 66
EK + R+T ++ K + + ++K KK K ++K KK KKK K
Sbjct: 968 EKVAEAVRKTVRRSVKKAAATRAAMKKKVAKKAPAKKA---AAKKAAAKKAAAKKKVAKK 1024
Query: 67 NKNRKEEKKKKKKRRTKKKEKNKNKSRK 94
+K +K K+ KK + +
Sbjct: 1025 APAKKVARKPAAKKAAKKPARKAAGRKA 1052
Score = 31.5 bits (71), Expect = 1.0
Identities = 18/82 (21%), Positives = 30/82 (36%)
Query: 20 EKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKK 79
EK RK + + K ++K KK KK K +K+ KK
Sbjct: 968 EKVAEAVRKTVRRSVKKAAATRAAMKKKVAKKAPAKKAAAKKAAAKKAAAKKKVAKKAPA 1027
Query: 80 RRTKKKEKNKNKSRKEEKKKEA 101
++ +K K ++K +K
Sbjct: 1028 KKVARKPAAKKAAKKPARKAAG 1049
Score = 30.0 bits (67), Expect = 3.2
Identities = 31/170 (18%), Positives = 62/170 (36%), Gaps = 15/170 (8%)
Query: 5 KEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNK-------KNKNKSRKEEEKKK 57
+E++ K + R N +R++ E + +K ++ +N + EK
Sbjct: 890 REKRGKLEAHRAMLSGSEANSARRDTMEIQNEQKPTQDGPAAEAQPAQENTVVESAEKAV 949
Query: 58 RTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNK 117
+ + +K +K + +S K+ A +KK K K
Sbjct: 950 AAVSEAAQQAATAVASGIEKVAEAVRKTVR---RSVKKAAATRAAMKKKVAKKAPAKKAA 1006
Query: 118 SRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKR 167
++K +K KK+ KK K +RK ++ KK +K ++
Sbjct: 1007 AKKAAAKKA-----AAKKKVAKKAPAKKVARKPAAKKAAKKPARKAAGRK 1051
Score = 29.6 bits (66), Expect = 4.2
Identities = 32/154 (20%), Positives = 61/154 (39%), Gaps = 9/154 (5%)
Query: 46 KNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEK 105
K+++R EE ++KR K + ++ + RR + +N+ K ++ EA+ +
Sbjct: 881 KDRARAEELREKRGKLEA---HRAMLSGSEANSARRDTMEIQNEQKPTQDGPAAEAQPAQ 937
Query: 106 KKTKNKEKNK-----NKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKK-K 159
+ T + K +++ ++ EK + +K + K KKK
Sbjct: 938 ENTVVESAEKAVAAVSEAAQQAATAVASGIEKVAEAVRKTVRRSVKKAAATRAAMKKKVA 997
Query: 160 KKKKKKKRTKKKEEEKRKNEKAVRLTKLSAFGIS 193
KK KK KK K+ K K A ++
Sbjct: 998 KKAPAKKAAAKKAAAKKAAAKKKVAKKAPAKKVA 1031
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional.
Length = 880
Score = 34.6 bits (80), Expect = 0.091
Identities = 34/184 (18%), Positives = 86/184 (46%), Gaps = 10/184 (5%)
Query: 3 NKKEEKKKKKKRRTKKKEKNKNKS-----RKEEEEEKRTKKKEKNKKNKNKSRKEEEKKK 57
+ E+ + + R + +E+ ++ R+E EEKR + +E ++ + EEK++
Sbjct: 499 ERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKRE 558
Query: 58 RTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNK 117
+ E+ + R+E + K K+ + + A+ E + + +EK +
Sbjct: 559 AAAEAEEEAEEAREEVAELNSKLAELKERIESLERIRTLLAAIADAEDEIERLREKREAL 618
Query: 118 SRKEEEEKKKEAEEKKKKRTKKKEKNKN-----KSRKEEEEEEKKKKKKKKKKKRTKKKE 172
+ +E +++ AE++++KR + E ++ + KE EE ++ ++K + R ++ +
Sbjct: 619 AELNDERRERLAEKRERKRELEAEFDEARIEEAREDKERAEEYLEQVEEKLDELREERDD 678
Query: 173 EEKR 176
+
Sbjct: 679 LQAE 682
Score = 34.6 bits (80), Expect = 0.095
Identities = 29/175 (16%), Positives = 76/175 (43%), Gaps = 13/175 (7%)
Query: 14 RRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEE 73
R + +E EEE E+ ++ E+ + + E ++R + E+ + R+
Sbjct: 473 DRERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEERREDLEELIAERRETI 532
Query: 74 KKKKKKRRTKKKEKNKNKSRKEEKKKEAEE---------EKKKTKNKEKNKNKSRKEE-- 122
++K+++ ++ + ++ EEK++ A E E+ N + + K R E
Sbjct: 533 EEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLE 592
Query: 123 --EEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEK 175
+ + + + +EK + + +E E+ +K+++K++ + +E +
Sbjct: 593 RIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEFDEAR 647
Score = 33.1 bits (76), Expect = 0.33
Identities = 32/165 (19%), Positives = 78/165 (47%), Gaps = 13/165 (7%)
Query: 29 EEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKK-KEKNKNKNRKEEKKKKKKRR--TKKK 85
EE+ E+ + + + + + + + EE+ +R + E R EE+++ + +++
Sbjct: 471 EEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEERREDLEELIAERRE 530
Query: 86 EKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKN 145
+ + R EE ++ A E + + + K + ++ +E EE ++E E K + KE+ ++
Sbjct: 531 TIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIES 590
Query: 146 KSR----------KEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEK 180
R E+E E ++K++ + +++E K E+
Sbjct: 591 LERIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRER 635
Score = 29.6 bits (67), Expect = 3.9
Identities = 25/108 (23%), Positives = 53/108 (49%), Gaps = 9/108 (8%)
Query: 29 EEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKN 88
+E E R K++ + N + + EK++R ++ E ++ R EE ++ K+R + E+
Sbjct: 606 DEIERLREKREALAELNDERRERLAEKRERKRELEAEFDEARIEEAREDKERAEEYLEQ- 664
Query: 89 KNKSRKEEKKKEAEEEKKKTKNK---EKNKNKSRKEEEEKKKEAEEKK 133
EEK E EE+ + + +N+ + +E E+++ E +
Sbjct: 665 -----VEEKLDELREERDDLQAEIGAVENELEELEELRERREALENRV 707
>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin. Trichoplein
or mitostatin, was first defined as a meiosis-specific
nuclear structural protein. It has since been linked
with mitochondrial movement. It is associated with the
mitochondrial outer membrane, and over-expression leads
to reduction in mitochondrial motility whereas lack of
it enhances mitochondrial movement. The activity appears
to be mediated through binding the mitochondria to the
actin intermediate filaments (IFs).
Length = 349
Score = 34.5 bits (80), Expect = 0.093
Identities = 34/184 (18%), Positives = 112/184 (60%), Gaps = 4/184 (2%)
Query: 4 KKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKE 63
+++ ++++ + R +++E+ + +EE++ ++++ K+ K + +E ++R ++KE
Sbjct: 83 REKRRQEEYEERLQEREQMDEIIERIQEEDEAEAQEKREKQKKLREEIDEFNEERIERKE 142
Query: 64 KNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKK-TKNKEKNKNKSRKEE 122
+ K + R+EE K + +R K + + + ++ + E+K+E E E + +E+ +++ + +
Sbjct: 143 EEKEREREEELKILEYQREKAEREEEREAERRERKEEKEREVARLRAQQEEAEDEREELD 202
Query: 123 EEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEE---EKKKKKKKKKKKRTKKKEEEKRKNE 179
E + +E+ +++ ++KEK + + R+ +++E ++++ ++K+++ +++ EE+ + E
Sbjct: 203 ELRADLYQEEYERKERQKEKEEAEKRRRQKQELQRAREEQIEEKEERLQEERAEEEAERE 262
Query: 180 KAVR 183
+ +
Sbjct: 263 RMLE 266
Score = 31.8 bits (73), Expect = 0.68
Identities = 37/180 (20%), Positives = 104/180 (57%), Gaps = 1/180 (0%)
Query: 3 NKKEEKKKKKKRRTKKK-EKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKK 61
++E K+K+++R + ++ + K +EE + +E+ + ++ R +EE + ++
Sbjct: 59 EERERKRKEERREGRAVLQEQIEEREKRRQEEYEERLQEREQMDEIIERIQEEDEAEAQE 118
Query: 62 KEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKE 121
K + + K R+E + ++R +K+E+ + + +E K E + EK + + + + + + RKE
Sbjct: 119 KREKQKKLREEIDEFNEERIERKEEEKEREREEELKILEYQREKAEREEEREAERRERKE 178
Query: 122 EEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKA 181
E+E++ +++ + + + ++ R + +EE ++K+++K+K+ +K+ +K++ ++A
Sbjct: 179 EKEREVARLRAQQEEAEDEREELDELRADLYQEEYERKERQKEKEEAEKRRRQKQELQRA 238
Score = 31.4 bits (72), Expect = 0.92
Identities = 33/165 (20%), Positives = 97/165 (58%), Gaps = 2/165 (1%)
Query: 4 KKEEKKKKKKRRTKK--KEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKK 61
++ E+K++K+R + ++ + + +EE +E R ++ + K + +++EE +KR ++
Sbjct: 172 ERRERKEEKEREVARLRAQQEEAEDEREELDELRADLYQEEYERKERQKEKEEAEKRRRQ 231
Query: 62 KEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKE 121
K++ + ++ ++K+++ + ++ E+ + R EK+ E EE +++ K + K +
Sbjct: 232 KQELQRAREEQIEEKEERLQEERAEEEAERERMLEKQAEDEELEQENAEKRRMKRLEHRR 291
Query: 122 EEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKK 166
E E++ E +E+++ +++E + + +EEE E + + ++++++
Sbjct: 292 ELEQQIEEKEERRAAEREEELEEGERLREEEAERQARIEEERQRL 336
Score = 30.6 bits (70), Expect = 1.5
Identities = 27/176 (15%), Positives = 103/176 (58%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKK 61
+K EK+KK + + + + + ++EE+E +R ++ + + + K+ +EEE++ ++
Sbjct: 116 AQEKREKQKKLREEIDEFNEERIERKEEEKEREREEELKILEYQREKAEREEEREAERRE 175
Query: 62 KEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKE 121
+++ K + + ++++ +++E ++ ++ +++ E +E +K+ + EK + + ++
Sbjct: 176 RKEEKEREVARLRAQQEEAEDEREELDELRADLYQEEYERKERQKEKEEAEKRRRQKQEL 235
Query: 122 EEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRK 177
+ ++++ EEK+++ +++ + + + + E++ + ++ +++ ++ + K E R+
Sbjct: 236 QRAREEQIEEKEERLQEERAEEEAERERMLEKQAEDEELEQENAEKRRMKRLEHRR 291
Score = 30.3 bits (69), Expect = 2.1
Identities = 20/100 (20%), Positives = 61/100 (61%)
Query: 71 KEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAE 130
K+ K ++K ++ ++ + R + +E E E+K+ + + + + +++ EE++K +
Sbjct: 29 KKRIKAEEKEEERRIDEMMEEERLKALAEEEERERKRKEERREGRAVLQEQIEEREKRRQ 88
Query: 131 EKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKK 170
E+ ++R +++E+ + +EE+E + ++K++K+K+ ++
Sbjct: 89 EEYEERLQEREQMDEIIERIQEEDEAEAQEKREKQKKLRE 128
Score = 28.7 bits (65), Expect = 5.8
Identities = 39/181 (21%), Positives = 105/181 (58%), Gaps = 14/181 (7%)
Query: 11 KKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNR 70
K+R + +EK + K+ ++EEE + + E+ + K+ EEE+++R +K+E+ + +
Sbjct: 19 NKERDAQIEEKKRIKAEEKEEERRIDEMMEEERL---KALAEEEERERKRKEERREGRAV 75
Query: 71 KEEKKKKKKRRTKKKEKNKNKSR---KEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKK 127
+E+ +++++R +++ + + + R E ++ EE++ + + K + + K R+E +E +
Sbjct: 76 LQEQIEEREKRRQEEYEERLQEREQMDEIIERIQEEDEAEAQEKREKQKKLREEIDEFNE 135
Query: 128 EAEEKKKKRTKKK--------EKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNE 179
E E+K++ +++ E + K+ +EEE E +++++K++K++ + ++ + E
Sbjct: 136 ERIERKEEEKEREREEELKILEYQREKAEREEEREAERRERKEEKEREVARLRAQQEEAE 195
Query: 180 K 180
Sbjct: 196 D 196
>gnl|CDD|233352 TIGR01310, L7, 60S ribosomal protein L7, eukaryotic. This model
describes the eukaryotic 60S (cytosolic) ribosomal
protein L7 and paralogs that may or may not also be L7.
Human, Drosophila, and Arabidopsis all have both a
typical L7 and an L7-related paralog. This family is
designated subfamily rather than equivalog to reflect
these uncharacterized paralogs. Members of this family
average ~ 250 residues in length, somewhat longer than
the archaeal L30P/L7E homolog (~ 155 residues) and much
longer than the related bacterial/organellar form (~ 60
residues).
Length = 235
Score = 33.9 bits (78), Expect = 0.099
Identities = 15/69 (21%), Positives = 32/69 (46%)
Query: 8 KKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKN 67
KK+K ++ + + K++K+ ++KR ++ + + RK E + R K+ K
Sbjct: 5 KKRKARQELAVQVAKQAKAKKKANKKKRKIYFKRAESFVKEYRKAEREIIRLKRLAKKPG 64
Query: 68 KNRKEEKKK 76
K + K
Sbjct: 65 KFYVPAEHK 73
Score = 29.3 bits (66), Expect = 3.3
Identities = 13/62 (20%), Positives = 29/62 (46%)
Query: 110 NKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTK 169
K + ++ + K+A+ KKK KK++ ++ +E K +++ + K+ K
Sbjct: 2 LLLKKRKARQELAVQVAKQAKAKKKANKKKRKIYFKRAESFVKEYRKAEREIIRLKRLAK 61
Query: 170 KK 171
K
Sbjct: 62 KP 63
Score = 29.3 bits (66), Expect = 3.5
Identities = 12/61 (19%), Positives = 25/61 (40%)
Query: 48 KSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKK 107
K RK ++ K+ K ++K+K +R + K K+ +E + + +K
Sbjct: 5 KKRKARQELAVQVAKQAKAKKKANKKKRKIYFKRAESFVKEYRKAEREIIRLKRLAKKPG 64
Query: 108 T 108
Sbjct: 65 K 65
Score = 28.9 bits (65), Expect = 4.7
Identities = 14/61 (22%), Positives = 29/61 (47%)
Query: 117 KSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKR 176
K RK +E + ++ K + K +K + K E K+ +K +++ R K+ ++
Sbjct: 5 KKRKARQELAVQVAKQAKAKKKANKKKRKIYFKRAESFVKEYRKAEREIIRLKRLAKKPG 64
Query: 177 K 177
K
Sbjct: 65 K 65
Score = 28.5 bits (64), Expect = 5.7
Identities = 19/75 (25%), Positives = 28/75 (37%), Gaps = 6/75 (8%)
Query: 25 KSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKK 84
K RK +E K+ K K +K + KR + K RK E++ R K+
Sbjct: 5 KKRKARQELAVQVAKQAKAKKKANKKKRKIYFKRAESFVKE---YRKAEREII---RLKR 58
Query: 85 KEKNKNKSRKEEKKK 99
K K + K
Sbjct: 59 LAKKPGKFYVPAEHK 73
Score = 28.5 bits (64), Expect = 6.1
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 89 KNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEE--EKKKEAEEKKKKRTKKKEKNKNK 146
K K+R+E + A++ K K K +K + K E K+ E++ R K+ K K
Sbjct: 6 KRKARQELAVQVAKQAKAKKKANKKKRKIYFKRAESFVKEYRKAEREIIRLKRLAKKPGK 65
Query: 147 S 147
Sbjct: 66 F 66
>gnl|CDD|221733 pfam12720, DUF3807, Protein of unknown function (DUF3807). This is
a family of conserved fungal proteins of unknown
function.
Length = 169
Score = 33.6 bits (77), Expect = 0.10
Identities = 12/65 (18%), Positives = 24/65 (36%), Gaps = 7/65 (10%)
Query: 93 RKEEKKKEAE-------EEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKN 145
R+ E K+EAE + + RKE E++ + K + ++K
Sbjct: 67 RERELKEEAEAEEEGEVDASPDAGAVAGESSADRKEAEQQGAAQKRKSCRDKERKSAKDP 126
Query: 146 KSRKE 150
+ +
Sbjct: 127 RGGTQ 131
Score = 33.2 bits (76), Expect = 0.12
Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
Query: 117 KSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKK-KKKKKKKKKRTKKKEEEK 175
+ KEE E ++E E + RKE E++ K+K + K+R K+
Sbjct: 69 RELKEEAEAEEEGEVDASPDAGAVAGESSADRKEAEQQGAAQKRKSCRDKERKSAKDPRG 128
Query: 176 RK 177
Sbjct: 129 GT 130
Score = 29.3 bits (66), Expect = 2.4
Identities = 10/78 (12%), Positives = 26/78 (33%)
Query: 27 RKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKE 86
+EE E + + + E ++ +++ K + K++K + +
Sbjct: 70 ELKEEAEAEEEGEVDASPDAGAVAGESSADRKEAEQQGAAQKRKSCRDKERKSAKDPRGG 129
Query: 87 KNKNKSRKEEKKKEAEEE 104
+ + EEE
Sbjct: 130 TQDVVDKSQASLDYGEEE 147
Score = 28.6 bits (64), Expect = 3.8
Identities = 9/79 (11%), Positives = 30/79 (37%)
Query: 25 KSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKK 84
+ KEE E + + + + + + +K +++ + + +K++K + +
Sbjct: 69 RELKEEAEAEEEGEVDASPDAGAVAGESSADRKEAEQQGAAQKRKSCRDKERKSAKDPRG 128
Query: 85 KEKNKNKSRKEEKKKEAEE 103
++ + EE
Sbjct: 129 GTQDVVDKSQASLDYGEEE 147
Score = 27.8 bits (62), Expect = 7.3
Identities = 15/87 (17%), Positives = 34/87 (39%), Gaps = 9/87 (10%)
Query: 68 KNRKEEKKKKKKRRT-KKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKK 126
+ KEE + +++ + +KEAE++ K K ++++
Sbjct: 69 RELKEEAEAEEEGEVDASPDAGAVAGESSADRKEAEQQGAAQKRKSC--------RDKER 120
Query: 127 KEAEEKKKKRTKKKEKNKNKSRKEEEE 153
K A++ + +K++ EEE
Sbjct: 121 KSAKDPRGGTQDVVDKSQASLDYGEEE 147
Score = 27.8 bits (62), Expect = 8.2
Identities = 10/77 (12%), Positives = 29/77 (37%), Gaps = 5/77 (6%)
Query: 98 KKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKK 157
++E +EE + + E + + + E ++ +++ K + ++E K
Sbjct: 68 ERELKEEAEAEEEGEVDASP-----DAGAVAGESSADRKEAEQQGAAQKRKSCRDKERKS 122
Query: 158 KKKKKKKKKRTKKKEEE 174
K + + K +
Sbjct: 123 AKDPRGGTQDVVDKSQA 139
>gnl|CDD|217348 pfam03064, U79_P34, HSV U79 / HCMV P34. This family represents
herpes virus protein U79 and cytomegalovirus early
phosphoprotein P34 (UL112).
Length = 238
Score = 33.7 bits (77), Expect = 0.11
Identities = 19/78 (24%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 97 KKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKK-KRTKKKEKNKNKSRKEEEEEE 155
K+ ++EK++ ++ +K+K RK++EEK++ E+K+ S K+E +E
Sbjct: 161 KRSGKQKEKRRVEDSQKHKEDRRKKQEEKRRNDEDKRPGGGGGSSGGQSGLSTKDEPPKE 220
Query: 156 KKKKKKKKKKKRTKKKEE 173
K++K +++ + E
Sbjct: 221 KRQKHHDPERRLEPQSHE 238
Score = 31.0 bits (70), Expect = 1.0
Identities = 19/97 (19%), Positives = 51/97 (52%), Gaps = 3/97 (3%)
Query: 28 KEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKK---KKRRTKK 84
K E+E + +K+ + +++ +S K++EK++ ++ +++ +K+E+K++ KR
Sbjct: 142 KFEKECRALSRKKSDDEHRKRSGKQKEKRRVEDSQKHKEDRRKKQEEKRRNDEDKRPGGG 201
Query: 85 KEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKE 121
+ +S K + +E+++K + E+ E
Sbjct: 202 GGSSGGQSGLSTKDEPPKEKRQKHHDPERRLEPQSHE 238
Score = 31.0 bits (70), Expect = 1.0
Identities = 19/100 (19%), Positives = 50/100 (50%)
Query: 5 KEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEK 64
K +K +K+ R ++K+ ++ RK ++K ++ E ++K+K RK++E+K+R + ++
Sbjct: 138 KNAEKFEKECRALSRKKSDDEHRKRSGKQKEKRRVEDSQKHKEDRRKKQEEKRRNDEDKR 197
Query: 65 NKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEE 104
+ + + ++ + K E++ E +
Sbjct: 198 PGGGGGSSGGQSGLSTKDEPPKEKRQKHHDPERRLEPQSH 237
Score = 30.6 bits (69), Expect = 1.2
Identities = 22/107 (20%), Positives = 50/107 (46%), Gaps = 6/107 (5%)
Query: 46 KNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEK 105
KN + E+E + ++KK ++++ R ++K+K++ +K K + ++EEK++ E+++
Sbjct: 138 KNAEKFEKECRALSRKKSDDEHRKRSGKQKEKRRVEDSQKHKEDRRKKQEEKRRNDEDKR 197
Query: 106 KKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEE 152
++E KE KR K + + + E
Sbjct: 198 PGGGGGSSGGQSGLSTKDEPPKE------KRQKHHDPERRLEPQSHE 238
Score = 30.6 bits (69), Expect = 1.3
Identities = 13/57 (22%), Positives = 32/57 (56%)
Query: 124 EKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEK 180
+KK +E +K+ K+KEK + + ++ +E+ +KK+++K++ K+ +
Sbjct: 151 SRKKSDDEHRKRSGKQKEKRRVEDSQKHKEDRRKKQEEKRRNDEDKRPGGGGGSSGG 207
Score = 30.2 bits (68), Expect = 1.5
Identities = 19/82 (23%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 95 EEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEE 154
KK + E K+ K KEK + + ++ +E +++ +E+K++ + K +
Sbjct: 151 SRKKSDDEHRKRSGKQKEKRRVEDSQKHKEDRRKKQEEKRRNDEDKRPGG-GGGSSGGQS 209
Query: 155 EKKKKKKKKKKKRTKKKEEEKR 176
K + K+KR K + E+R
Sbjct: 210 GLSTKDEPPKEKRQKHHDPERR 231
Score = 29.1 bits (65), Expect = 3.6
Identities = 21/93 (22%), Positives = 42/93 (45%), Gaps = 6/93 (6%)
Query: 94 KEEKKKEAEEEKKK--TKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEE 151
K EK+ A KK K K K ++ E+ +K E+++KK+ +K+ +++K
Sbjct: 142 KFEKECRALSRKKSDDEHRKRSGKQKEKRRVEDSQKHKEDRRKKQEEKRRNDEDKRPGGG 201
Query: 152 EEEEKKKKKKKKK----KKRTKKKEEEKRKNEK 180
+ K K++ +K + +R+ E
Sbjct: 202 GGSSGGQSGLSTKDEPPKEKRQKHHDPERRLEP 234
Score = 27.9 bits (62), Expect = 9.5
Identities = 17/55 (30%), Positives = 35/55 (63%), Gaps = 2/55 (3%)
Query: 124 EKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKN 178
+K E E + R K ++++ +S K ++E+++ + +K K+ +KK+EEKR+N
Sbjct: 140 AEKFEKECRALSRKKSDDEHRKRSGK--QKEKRRVEDSQKHKEDRRKKQEEKRRN 192
>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated
ATPase domains [General function prediction only].
Length = 530
Score = 34.5 bits (80), Expect = 0.11
Identities = 16/66 (24%), Positives = 30/66 (45%)
Query: 6 EEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKN 65
E+K ++ R+ + + K +E+E R K +K K KSR + +K + E+
Sbjct: 239 LEQKAERLRQEAAAYEKQQKELAKEQEWIRRGKAAASKAKKAKSRIKRLEKLEARLAEER 298
Query: 66 KNKNRK 71
+ K
Sbjct: 299 PVEEGK 304
Score = 31.1 bits (71), Expect = 1.2
Identities = 19/103 (18%), Positives = 38/103 (36%), Gaps = 19/103 (18%)
Query: 91 KSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKE 150
+ + E ++EA +K+ K K + R+ K +K K K KSR +
Sbjct: 240 EQKAERLRQEAAAYEKQQKELAKEQEWIRRG-----------KAAASKAK---KAKSRIK 285
Query: 151 -----EEEEEKKKKKKKKKKKRTKKKEEEKRKNEKAVRLTKLS 188
E +++ ++ K + KR + + +S
Sbjct: 286 RLEKLEARLAEERPVEEGKPLAFRFPPPGKRLGKLVLEFENVS 328
Score = 30.7 bits (70), Expect = 1.7
Identities = 14/80 (17%), Positives = 32/80 (40%), Gaps = 6/80 (7%)
Query: 50 RKEEEKKKRTKKKEKNKNKNRKEEKK---KKKKRRTKKKEKNKNKSRKEEKKKEAEEEKK 106
++ E+ ++ + + K +E++ + K +K K K KSR + +K +
Sbjct: 240 EQKAERLRQEAAAYEKQQKELAKEQEWIRRGKAAASKAK---KAKSRIKRLEKLEARLAE 296
Query: 107 KTKNKEKNKNKSRKEEEEKK 126
+ +E R K+
Sbjct: 297 ERPVEEGKPLAFRFPPPGKR 316
Score = 29.9 bits (68), Expect = 2.5
Identities = 18/81 (22%), Positives = 33/81 (40%), Gaps = 5/81 (6%)
Query: 72 EEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEK--KKEA 129
E+K ++ R+ + + K +E++ + +K K K KSR + EK + A
Sbjct: 239 LEQKAERLRQEAAAYEKQQKELAKEQEWIRRGKAAASKAK---KAKSRIKRLEKLEARLA 295
Query: 130 EEKKKKRTKKKEKNKNKSRKE 150
EE+ + K K
Sbjct: 296 EERPVEEGKPLAFRFPPPGKR 316
Score = 29.9 bits (68), Expect = 2.8
Identities = 11/83 (13%), Positives = 31/83 (37%), Gaps = 2/83 (2%)
Query: 29 EEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKN 88
E++ E+ ++ +K + + KE+E +R K K + + K+ ++ + +
Sbjct: 240 EQKAERLRQEAAAYEKQQKELAKEQEWIRRGKAAASKAKKA--KSRIKRLEKLEARLAEE 297
Query: 89 KNKSRKEEKKKEAEEEKKKTKNK 111
+ + K+
Sbjct: 298 RPVEEGKPLAFRFPPPGKRLGKL 320
>gnl|CDD|227382 COG5049, XRN1, 5'-3' exonuclease [DNA replication, recombination,
and repair / Cell division and chromosome partitioning /
Translation].
Length = 953
Score = 34.5 bits (79), Expect = 0.12
Identities = 28/162 (17%), Positives = 54/162 (33%), Gaps = 7/162 (4%)
Query: 12 KKRRTKKKEKNKNK-SRKEEEEEKRTKKKEKN-----KKNKNKSRKEEEKKKRTKKKEKN 65
KK +++ KN++ +E K K KK + + + KK
Sbjct: 378 KKDHIQEERKNESLERFSLRKERKEGLKGMPRVVYEQKKLIGSIKPTLMDQLQEKKSPDL 437
Query: 66 KNKNRKEEKKKKKKRRTKKKEKNKNKSRKE-EKKKEAEEEKKKTKNKEKNKNKSRKEEEE 124
++ + K K E + + + K + E + +E+E
Sbjct: 438 PDEEFIDTLALPKDLDMKNHELFLKRFANDLGLSISKAIKSKGNYSLEMDIASDSPDEDE 497
Query: 125 KKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKK 166
++ E+E ++ K N +EE E EK + K
Sbjct: 498 EEFESEVDSIRKIPDKYVNIIVEEEEENETEKTVNLRFPGWK 539
Score = 31.4 bits (71), Expect = 1.1
Identities = 30/169 (17%), Positives = 57/169 (33%), Gaps = 12/169 (7%)
Query: 6 EEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKN 65
EE+K + R + K RKE + E+ K + + + KK
Sbjct: 384 EERKNESLERFSLR-----KERKEGLKGMPRVVYEQKKL-IGSIKPTLMDQLQEKKSPDL 437
Query: 66 KNKNRKEEKKKKKKRRTKKKEKNKNKSRKE-EKKKEAEEEKKKTKNKEKNKNKSRKEEEE 124
++ + K K E + + + K + E + +E+E
Sbjct: 438 PDEEFIDTLALPKDLDMKNHELFLKRFANDLGLSISKAIKSKGNYSLEMDIASDSPDEDE 497
Query: 125 KKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEE 173
++ E+E ++ K N EEEE+ + +K + KE
Sbjct: 498 EEFESEVDSIRKIPDKYVNIIV-----EEEEENETEKTVNLRFPGWKER 541
Score = 28.7 bits (64), Expect = 6.2
Identities = 28/157 (17%), Positives = 52/157 (33%), Gaps = 5/157 (3%)
Query: 7 EKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNK 66
E K R +++K + ++ + KK + K K E
Sbjct: 402 EGLKGMPRVVYEQKKLIGSIKPTLMDQLQEKKSPDLPDEEFIDTLALPKDLDMKNHELFL 461
Query: 67 NKNRKE-----EKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKE 121
+ + K K K + + S E++++ E K +K N +E
Sbjct: 462 KRFANDLGLSISKAIKSKGNYSLEMDIASDSPDEDEEEFESEVDSIRKIPDKYVNIIVEE 521
Query: 122 EEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKK 158
EEE + E + K+ +K + EEK +
Sbjct: 522 EEENETEKTVNLRFPGWKERYYTSKLHFTTDSEEKIR 558
Score = 28.4 bits (63), Expect = 8.9
Identities = 17/79 (21%), Positives = 35/79 (44%)
Query: 110 NKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTK 169
+ E + K +EE+K E+ E+ R ++KE K R E+++ K + +
Sbjct: 371 SFEDDIFKKDHIQEERKNESLERFSLRKERKEGLKGMPRVVYEQKKLIGSIKPTLMDQLQ 430
Query: 170 KKEEEKRKNEKAVRLTKLS 188
+K+ +E+ + L
Sbjct: 431 EKKSPDLPDEEFIDTLALP 449
>gnl|CDD|129694 TIGR00606, rad50, rad50. All proteins in this family for which
functions are known are involvedin recombination,
recombinational repair, and/or non-homologous end
joining.They are components of an exonuclease complex
with MRE11 homologs. This family is distantly related to
the SbcC family of bacterial proteins.This family is
based on the phylogenomic analysis of JA Eisen (1999,
Ph.D. Thesis, Stanford University).
Length = 1311
Score = 34.3 bits (78), Expect = 0.13
Identities = 47/193 (24%), Positives = 87/193 (45%), Gaps = 13/193 (6%)
Query: 3 NKKEEKKKK---KKRRTKKKEKNKNKSRKEEE----EEKRTKKKEKNKKNKNKSRKEEEK 55
+ KE KK K K+K KN + K+ E + K K+K + + + EE
Sbjct: 930 SSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDYLKQKETELNTVNAQLEEC 989
Query: 56 KKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNK 115
+K +K ++ R++ +K + R + N ++E + KE EEE K KE +
Sbjct: 990 EKHQEKINEDMRLMRQDIDTQKIQERWLQD--NLTLRKRENELKEVEEE-LKQHLKEMGQ 1046
Query: 116 NKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEK 175
+ + ++E +K E K+ R++ E+E K KK+ ++ + + EE+
Sbjct: 1047 MQVLQMKQEHQKLEEN---IDLIKRNHVLALGRQKGYEKEIKHFKKELREPQFRDAEEKY 1103
Query: 176 RKNEKAVRLTKLS 188
R+ +R T+L
Sbjct: 1104 REMMIVMRTTELV 1116
Score = 32.7 bits (74), Expect = 0.44
Identities = 35/191 (18%), Positives = 79/191 (41%), Gaps = 15/191 (7%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKE--------- 52
+K+EK+ + K E N+ + ++E+ + K K K++
Sbjct: 828 NQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFE 887
Query: 53 ---EEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTK 109
E + + ++++ + ++EK + S KE K+A+++ K
Sbjct: 888 EQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIK 947
Query: 110 NKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTK 169
K KN + K+ E K ++ ++ K+KE N + EE EK ++K + + +
Sbjct: 948 EKVKNIHGYMKDIENKIQDGKDDYL---KQKETELNTVNAQLEECEKHQEKINEDMRLMR 1004
Query: 170 KKEEEKRKNEK 180
+ + ++ E+
Sbjct: 1005 QDIDTQKIQER 1015
Score = 31.9 bits (72), Expect = 0.75
Identities = 26/190 (13%), Positives = 85/190 (44%), Gaps = 4/190 (2%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEK----KK 57
+ ++ + +K ++ + + K + K + E ++ T K+ + + ++ + E + K
Sbjct: 193 QVRQTQGQKVQEHQMELKYLKQYKEKACEIRDQITSKEAQLESSREIVKSYENELDPLKN 252
Query: 58 RTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNK 117
R K+ E N +K K + + K + KK+ + N + + +K + ++ + N +
Sbjct: 253 RLKEIEHNLSKIMKLDNEIKALKSRKKQMEKDNSELELKMEKVFQGTDEQLNDLYHNHQR 312
Query: 118 SRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRK 177
+ +E+E + + + + +K K++ + + E+ + + + + ++ + ++ +
Sbjct: 313 TVREKERELVDCQRELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQS 372
Query: 178 NEKAVRLTKL 187
+ L
Sbjct: 373 LATRLELDGF 382
Score = 28.9 bits (64), Expect = 6.8
Identities = 31/186 (16%), Positives = 72/186 (38%), Gaps = 13/186 (6%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKK 61
KN ++++ K + + +E ++ + +++K E +K+ KK
Sbjct: 393 KNFHTLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKK 452
Query: 62 KEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKE 121
+E+ K ++ ++ + R + ++ K+ +E K EKN +
Sbjct: 453 QEELKFVIKELQQLEGSSDRILELDQELRKAERELSK------------AEKNSLTETLK 500
Query: 122 EEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKA 181
+E K + E+ R +K + + + + + K K K ++ K K+ +
Sbjct: 501 KEVKSLQNEKADLDRKLRKLDQEM-EQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHS 559
Query: 182 VRLTKL 187
LT L
Sbjct: 560 DELTSL 565
Score = 28.5 bits (63), Expect = 7.6
Identities = 39/182 (21%), Positives = 80/182 (43%), Gaps = 14/182 (7%)
Query: 11 KKKRRTKKKEKNKNKSRKEEEEEKRTKK-----KEKNKKNKNKSRKEEEKKKRTKKKEKN 65
KK+ KK+E+ K ++ ++ E + + +E K + S+ E+ T KKE
Sbjct: 445 KKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAERELSKAEKNSLTETLKKEVK 504
Query: 66 KNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEE-- 123
+N K + +K ++ ++ E+ N + E + K K+++ K KSR +E
Sbjct: 505 SLQNEKADLDRKLRKLDQEMEQ-LNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELT 563
Query: 124 ------EKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRK 177
KK+ E+ ++K+ + +++ K +E ++ K + KEE+
Sbjct: 564 SLLGYFPNKKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSS 623
Query: 178 NE 179
E
Sbjct: 624 YE 625
Score = 28.5 bits (63), Expect = 8.7
Identities = 30/139 (21%), Positives = 58/139 (41%), Gaps = 12/139 (8%)
Query: 9 KKKKKRRTKKKEKNKNK-SRKEEEEEKRTKKKEKNKKNKNKSRKEEE-----------KK 56
+K +K + ++ N + +R + E + K + + K KSR +E K+
Sbjct: 515 RKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLGYFPNKKQ 574
Query: 57 KRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKN 116
K+K N+ ++ K + E+NKN E + KE + + K + +
Sbjct: 575 LEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVCGS 634
Query: 117 KSRKEEEEKKKEAEEKKKK 135
+ + + E+ KE EK K
Sbjct: 635 QDEESDLERLKEEIEKSSK 653
>gnl|CDD|219256 pfam06991, Prp19_bind, Splicing factor, Prp19-binding domain. This
family represents the C-terminus (approximately 300
residues) of proteins that are involved as binding
partners for Prp19 as part of the nuclear pore complex.
The family in Drosophila is necessary for pre-mRNA
splicing, and the human protein has been found in
purifications of the spliceosome. In the past this
family was thought, erroneously, to be associated with
microfibrillin.
Length = 277
Score = 33.7 bits (77), Expect = 0.14
Identities = 39/164 (23%), Positives = 78/164 (47%), Gaps = 8/164 (4%)
Query: 28 KEEEEEKRTKKKEKNKKNKNKSRKEEE------KKKRTKKKEKNKNKNRKEEKKKKKKRR 81
E EEE + ++E+ + + + E+ K T+KK++ + R+ E K+K
Sbjct: 5 LELEEEDESGEEEEEESEEEEETDSEDDMEPRLKPVFTRKKDRITIQEREREAAKEKALE 64
Query: 82 TKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKE 141
+ K K + + R+ K E E +K+ K ++ ++ + E EE++ + K +E
Sbjct: 65 EEAKRKAEERKRETLKIVEEEVKKELELKKRNTLLEANIDDVDTDDENEEEEYEAWKLRE 124
Query: 142 KNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEK--RKNEKAVR 183
+ K +EE EE +++K + +K + ++E RKN K
Sbjct: 125 LKRIKRDREEREEMEREKAEIEKMRNMTEEERRAELRKNPKVST 168
Score = 29.5 bits (66), Expect = 2.7
Identities = 34/131 (25%), Positives = 65/131 (49%), Gaps = 1/131 (0%)
Query: 35 RTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRK 94
R +E+ ++ + EEE K++ +++++ K +EE KK+ + + + N
Sbjct: 47 RITIQEREREAAKEKALEEEAKRKAEERKRETLKIVEEEVKKELELKKRNTLLEANIDDV 106
Query: 95 EEKKKEAEEEKKKTKNKE-KNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEE 153
+ + EEE + K +E K + R+E EE ++E E +K R +E+ + + RK +
Sbjct: 107 DTDDENEEEEYEAWKLRELKRIKRDREEREEMEREKAEIEKMRNMTEEERRAELRKNPKV 166
Query: 154 EEKKKKKKKKK 164
K KK K K
Sbjct: 167 STNKAKKGKYK 177
>gnl|CDD|237744 PRK14521, rpsP, 30S ribosomal protein S16; Provisional.
Length = 186
Score = 33.2 bits (76), Expect = 0.15
Identities = 19/90 (21%), Positives = 40/90 (44%)
Query: 72 EEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEE 131
E + + K K++++ K ++K++ K + KK EK N++R E +KK AE
Sbjct: 96 EAQAEAKFEAWKEEKEGKVNAKKDKLSKAKKAAKKAALEAEKKVNEARAEAVAEKKAAEA 155
Query: 132 KKKKRTKKKEKNKNKSRKEEEEEEKKKKKK 161
+ + ++ + EE ++
Sbjct: 156 AAVAAEEAAAAEEEEAEEAPAEEAPAEESA 185
Score = 31.7 bits (72), Expect = 0.43
Identities = 17/80 (21%), Positives = 35/80 (43%)
Query: 75 KKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKK 134
K++K+ + K+ +K++K KK E EKK + + + + + E E
Sbjct: 107 KEEKEGKVNAKKDKLSKAKKAAKKAALEAEKKVNEARAEAVAEKKAAEAAAVAAEEAAAA 166
Query: 135 KRTKKKEKNKNKSRKEEEEE 154
+ + +E ++ EE E
Sbjct: 167 EEEEAEEAPAEEAPAEESAE 186
Score = 30.9 bits (70), Expect = 0.72
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 6/85 (7%)
Query: 28 KEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEK 87
KEE+E K KK+K K K+ KK + EK N+ R E +KK
Sbjct: 107 KEEKEGKVNAKKDKLSK-----AKKAAKKAALEA-EKKVNEARAEAVAEKKAAEAAAVAA 160
Query: 88 NKNKSRKEEKKKEAEEEKKKTKNKE 112
+ + +EE+ +EA E+ +
Sbjct: 161 EEAAAAEEEEAEEAPAEEAPAEESA 185
Score = 30.9 bits (70), Expect = 0.83
Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 1/93 (1%)
Query: 49 SRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKT 108
+ + E K K+EK N K++K K K+ KK K E + EA EKK
Sbjct: 95 TEAQAEAKFEAWKEEKEGKVNAKKDKLSKAKKAAKKAALEAEKKVN-EARAEAVAEKKAA 153
Query: 109 KNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKE 141
+ ++ EEE+ +EA ++ + E
Sbjct: 154 EAAAVAAEEAAAAEEEEAEEAPAEEAPAEESAE 186
Score = 29.7 bits (67), Expect = 1.8
Identities = 21/86 (24%), Positives = 36/86 (41%)
Query: 96 EKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEE 155
E K EA +E+K+ K K S+ ++ KK E +KK + E K E
Sbjct: 100 EAKFEAWKEEKEGKVNAKKDKLSKAKKAAKKAALEAEKKVNEARAEAVAEKKAAEAAAVA 159
Query: 156 KKKKKKKKKKKRTKKKEEEKRKNEKA 181
++ ++++ + EE E A
Sbjct: 160 AEEAAAAEEEEAEEAPAEEAPAEESA 185
Score = 28.2 bits (63), Expect = 5.3
Identities = 18/84 (21%), Positives = 32/84 (38%), Gaps = 4/84 (4%)
Query: 21 KNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKR 80
K + + + +++K +K K+ KK E EKK + E K E +
Sbjct: 107 KEEKEGKVNAKKDKLSKAKKAAKKA----ALEAEKKVNEARAEAVAEKKAAEAAAVAAEE 162
Query: 81 RTKKKEKNKNKSRKEEKKKEAEEE 104
+E+ ++ EE E E
Sbjct: 163 AAAAEEEEAEEAPAEEAPAEESAE 186
Score = 28.2 bits (63), Expect = 5.3
Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 6/63 (9%)
Query: 120 KEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNE 179
KEE+E K A++ K + KK K E EKK + + + KK E
Sbjct: 107 KEEKEGKVNAKKDKLSKAKKAAKKAAL------EAEKKVNEARAEAVAEKKAAEAAAVAA 160
Query: 180 KAV 182
+
Sbjct: 161 EEA 163
>gnl|CDD|220237 pfam09428, DUF2011, Fungal protein of unknown function (DUF2011).
This is a family of fungal proteins whose function is
unknown.
Length = 130
Score = 32.2 bits (74), Expect = 0.16
Identities = 15/66 (22%), Positives = 39/66 (59%)
Query: 113 KNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKE 172
K N ++E ++KE ++K+K+ KK+ R+ +E +K+K+ +K +++ K+
Sbjct: 65 KKHNAKVEKELLREKEKKKKRKRPGKKRRIALRLRRERTKERAEKEKRTRKNREKKFKRR 124
Query: 173 EEKRKN 178
+++++
Sbjct: 125 QKEKEK 130
Score = 31.5 bits (72), Expect = 0.28
Identities = 26/62 (41%), Positives = 43/62 (69%), Gaps = 1/62 (1%)
Query: 64 KNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEE 123
K + + +E++KKKK++R KK + + R+E K+ AE+EK+ KN+EK K K R++E+
Sbjct: 70 KVEKELLREKEKKKKRKRPGKKRRIALRLRRERTKERAEKEKRTRKNREK-KFKRRQKEK 128
Query: 124 EK 125
EK
Sbjct: 129 EK 130
Score = 29.2 bits (66), Expect = 1.8
Identities = 24/66 (36%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Query: 23 KNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNR-KEEKKKKKKRR 81
K + K E+E R K+K+K +K K R+ + +R + KE+ + + R ++ ++KK KRR
Sbjct: 65 KKHNAKVEKELLREKEKKKKRKRPGKKRRIALRLRRERTKERAEKEKRTRKNREKKFKRR 124
Query: 82 TKKKEK 87
K+KEK
Sbjct: 125 QKEKEK 130
Score = 28.4 bits (64), Expect = 3.3
Identities = 16/55 (29%), Positives = 35/55 (63%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKK 56
+KE+KKK+K+ K++ + + + +E ++ K+ KN++ K K R++E++K
Sbjct: 76 LREKEKKKKRKRPGKKRRIALRLRRERTKERAEKEKRTRKNREKKFKRRQKEKEK 130
Score = 28.4 bits (64), Expect = 3.4
Identities = 18/65 (27%), Positives = 40/65 (61%)
Query: 39 KEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKK 98
K+ N K + + +E+EKKK+ K+ K + + +++ K+R K+K KN+ +K +++
Sbjct: 65 KKHNAKVEKELLREKEKKKKRKRPGKKRRIALRLRRERTKERAEKEKRTRKNREKKFKRR 124
Query: 99 KEAEE 103
++ +E
Sbjct: 125 QKEKE 129
>gnl|CDD|235850 PRK06669, fliH, flagellar assembly protein H; Validated.
Length = 281
Score = 33.5 bits (77), Expect = 0.18
Identities = 23/117 (19%), Positives = 57/117 (48%)
Query: 56 KKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNK 115
KR+ K K K + +K + K K+KE+ + + ++ ++ E + + E+ +
Sbjct: 6 FKRSNVINKEKLKTHEIQKYRFKVLSIKEKERLREEEEEQVEQLREEANDEAKEIIEEAE 65
Query: 116 NKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKE 172
+ + E ++EA+E+ K+T + K + + E E+++ +++ ++ K E
Sbjct: 66 EDAFEIVEAAEEEAKEELLKKTDEASSIIEKLQMQIEREQEEWEEELERLIEEAKAE 122
Score = 30.8 bits (70), Expect = 1.0
Identities = 31/153 (20%), Positives = 77/153 (50%), Gaps = 3/153 (1%)
Query: 4 KKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKE 63
K+ K+K +T + +K + K +E+E+ +++E+ + + +E K+ + +E
Sbjct: 7 KRSNVINKEKLKTHEIQKYRFKVLSIKEKERLREEEEEQVEQLREEANDEAKEIIEEAEE 66
Query: 64 K--NKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKE 121
+ +EE K++ ++T + K + + ++++ E E++ + E+ K + +E
Sbjct: 67 DAFEIVEAAEEEAKEELLKKTDEASSIIEKLQMQIEREQEEWEEELERLIEEAKAEGYEE 126
Query: 122 EEEK-KKEAEEKKKKRTKKKEKNKNKSRKEEEE 153
EK ++E E+ ++ ++ K K K+ EE
Sbjct: 127 GYEKGREEGLEEVRELIEQLNKIIEKLIKKREE 159
Score = 30.4 bits (69), Expect = 1.8
Identities = 35/164 (21%), Positives = 73/164 (44%), Gaps = 3/164 (1%)
Query: 17 KKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKK 76
K+ NK + + E ++ + K + K K + R+EEE++ ++E N E+ +
Sbjct: 6 FKRSNVINKEKLKTHEIQKYRFKVLSIKEKERLREEEEEQVEQLREEANDEAKEIIEEAE 65
Query: 77 KKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKR 136
+ + + + K +K EA +K + + + ++E EE+ + E+ K
Sbjct: 66 EDAFEIVEAAEEEAKEELLKKTDEASSIIEKLQMQ---IEREQEEWEEELERLIEEAKAE 122
Query: 137 TKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEK 180
++ K + EE E ++ K +K KK+EE +E+
Sbjct: 123 GYEEGYEKGREEGLEEVRELIEQLNKIIEKLIKKREEILESSEE 166
>gnl|CDD|224415 COG1498, SIK1, Protein implicated in ribosomal biogenesis, Nop56p
homolog [Translation, ribosomal structure and
biogenesis].
Length = 395
Score = 33.5 bits (77), Expect = 0.18
Identities = 14/56 (25%), Positives = 32/56 (57%)
Query: 123 EEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKN 178
++E E++ +K +K K K++ E +++E+ + ++KKK++ K E +N
Sbjct: 340 ISLREELEKRIEKLKEKPPKPPTKAKPERDKKERPGRYRRKKKEKKAKSERRGLQN 395
Score = 30.8 bits (70), Expect = 1.2
Identities = 15/55 (27%), Positives = 29/55 (52%)
Query: 117 KSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKK 171
R+E E++ ++ +EK K K + ++K + KKK+KK K ++R +
Sbjct: 341 SLREELEKRIEKLKEKPPKPPTKAKPERDKKERPGRYRRKKKEKKAKSERRGLQN 395
Score = 30.8 bits (70), Expect = 1.2
Identities = 14/62 (22%), Positives = 30/62 (48%)
Query: 118 SRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRK 177
S + + +E EK+ ++ K+K K E +++++ + ++KKK K K E +
Sbjct: 334 SGEPDGISLREELEKRIEKLKEKPPKPPTKAKPERDKKERPGRYRRKKKEKKAKSERRGL 393
Query: 178 NE 179
Sbjct: 394 QN 395
Score = 30.1 bits (68), Expect = 2.6
Identities = 14/53 (26%), Positives = 30/53 (56%)
Query: 28 KEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKR 80
+EE E++ K KEK K K++ E +KK+R + + K + + + +++ +
Sbjct: 343 REELEKRIEKLKEKPPKPPTKAKPERDKKERPGRYRRKKKEKKAKSERRGLQN 395
Score = 30.1 bits (68), Expect = 2.6
Identities = 13/53 (24%), Positives = 24/53 (45%)
Query: 29 EEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRR 81
EE EKR +K ++ K E KK + + K K +K + +++ +
Sbjct: 343 REELEKRIEKLKEKPPKPPTKAKPERDKKERPGRYRRKKKEKKAKSERRGLQN 395
Score = 29.7 bits (67), Expect = 2.7
Identities = 10/53 (18%), Positives = 25/53 (47%)
Query: 38 KKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKN 90
++E K+ + K + + K + K + + +KKK+K+ ++ +N
Sbjct: 343 REELEKRIEKLKEKPPKPPTKAKPERDKKERPGRYRRKKKEKKAKSERRGLQN 395
Score = 28.9 bits (65), Expect = 5.4
Identities = 14/62 (22%), Positives = 31/62 (50%)
Query: 26 SRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKK 85
S + + R + +++ +K K K K K K + K++ + R+++K+KK K +
Sbjct: 334 SGEPDGISLREELEKRIEKLKEKPPKPPTKAKPERDKKERPGRYRRKKKEKKAKSERRGL 393
Query: 86 EK 87
+
Sbjct: 394 QN 395
Score = 28.5 bits (64), Expect = 7.8
Identities = 10/42 (23%), Positives = 24/42 (57%)
Query: 69 NRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKN 110
K K K + + K++ + R+++K+K+A+ E++ +N
Sbjct: 354 KEKPPKPPTKAKPERDKKERPGRYRRKKKEKKAKSERRGLQN 395
>gnl|CDD|227352 COG5019, CDC3, Septin family protein [Cell division and chromosome
partitioning / Cytoskeleton].
Length = 373
Score = 33.5 bits (77), Expect = 0.18
Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 4/86 (4%)
Query: 58 RTKKKEKNKNKNRKEEKKKKKKRRTKK----KEKNKNKSRKEEKKKEAEEEKKKTKNKEK 113
RT+K KN K+ + R ++ K+K K R++EK+ E E+ + KE
Sbjct: 288 RTEKLSGLKNSGEPSLKEIHEARLNEEERELKKKFTEKIREKEKRLEELEQNLIEERKEL 347
Query: 114 NKNKSRKEEEEKKKEAEEKKKKRTKK 139
N +++ + E +K K K
Sbjct: 348 NSKLEEIQKKLEDLEKRLEKLKSNKS 373
Score = 33.1 bits (76), Expect = 0.25
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
Query: 15 RTKKKEKNKNKSRKEEEEEKRTK-KKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEE 73
RT+K KN +E + +E+ + K + K EK+KR ++ E+N + RK E
Sbjct: 288 RTEKLSGLKNSGEPSLKEIHEARLNEEERELKKKFTEKIREKEKRLEELEQNLIEERK-E 346
Query: 74 KKKKKKRRTKKKEKNKNKSRKEEKKKE 100
K + KK E + + K + K
Sbjct: 347 LNSKLEEIQKKLEDLEKRLEKLKSNKS 373
Score = 32.7 bits (75), Expect = 0.33
Identities = 19/86 (22%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 81 RTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEK-KKKRTKK 139
RT+K KN K+ ++ + +K + +E+E++ +E E+ ++R +
Sbjct: 288 RTEKLSGLKNSGEPSLKEIHEARLNEEERELKKKFTEKIREKEKRLEELEQNLIEERKEL 347
Query: 140 KEKNKNKSRKEEEEEEKKKKKKKKKK 165
K + +K E+ E++ +K K K
Sbjct: 348 NSKLEEIQKKLEDLEKRLEKLKSNKS 373
Score = 32.3 bits (74), Expect = 0.50
Identities = 27/101 (26%), Positives = 50/101 (49%), Gaps = 3/101 (2%)
Query: 23 KNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRT 82
K + E RT+K K + S KE + + +E+ + K + EK ++K++R
Sbjct: 276 KETTENLLYENYRTEKLSGLKNSGEPSLKEIHEARL--NEEERELKKKFTEKIREKEKRL 333
Query: 83 KKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEE 123
++ E+N + RKE + EE +KK ++ EK K + +
Sbjct: 334 EELEQNLIEERKE-LNSKLEEIQKKLEDLEKRLEKLKSNKS 373
Score = 31.5 bits (72), Expect = 0.78
Identities = 16/78 (20%), Positives = 40/78 (51%)
Query: 112 EKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKK 171
KN + +E + + EE+++ + K EK + K ++ EE E+ +++K+ + ++
Sbjct: 295 LKNSGEPSLKEIHEARLNEEERELKKKFTEKIREKEKRLEELEQNLIEERKELNSKLEEI 354
Query: 172 EEEKRKNEKAVRLTKLSA 189
+++ EK + K +
Sbjct: 355 QKKLEDLEKRLEKLKSNK 372
Score = 29.6 bits (67), Expect = 3.5
Identities = 18/92 (19%), Positives = 39/92 (42%), Gaps = 6/92 (6%)
Query: 18 KKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKK 77
+ EK E KE ++ N+ +E +KK K +EK + + + E+
Sbjct: 288 RTEKLSGLKNSGEPSL-----KEIHEARLNEEERELKKKFTEKIREK-EKRLEELEQNLI 341
Query: 78 KKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTK 109
++R+ + + + + E+ +K E+ K
Sbjct: 342 EERKELNSKLEEIQKKLEDLEKRLEKLKSNKS 373
Score = 28.8 bits (65), Expect = 5.9
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKK 61
++ E KKK + ++KEK +E E+ ++KE N K + +K E+ +KR +K
Sbjct: 312 NEEERELKKKFTEKIREKEKRL----EELEQNLIEERKELNSKLEEIQKKLEDLEKRLEK 367
Query: 62 KEKNK 66
+ NK
Sbjct: 368 LKSNK 372
>gnl|CDD|240254 PTZ00069, PTZ00069, 60S ribosomal protein L5; Provisional.
Length = 300
Score = 33.5 bits (77), Expect = 0.19
Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 5/88 (5%)
Query: 25 KSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKK-----EKNKNKNRKEEKKKKKK 79
K KEE+ +K K+ K K E+ K+ K K K +K++K KK
Sbjct: 210 KQLKEEDPDKYKKQFSKYIKAGVGPDSLEDMYKKAHAAIRANPSKVKKKKKKKKKVVHKK 269
Query: 80 RRTKKKEKNKNKSRKEEKKKEAEEEKKK 107
+TKK + K+R + KK + E +K
Sbjct: 270 YKTKKLTGKQRKARVKAKKAQRRERLQK 297
Score = 31.6 bits (72), Expect = 0.61
Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 5/88 (5%)
Query: 5 KEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKK-----EKNKKNKNKSRKEEEKKKRT 59
KEE K K++ K K E+ K+ K KK K K +K KK +T
Sbjct: 213 KEEDPDKYKKQFSKYIKAGVGPDSLEDMYKKAHAAIRANPSKVKKKKKKKKKVVHKKYKT 272
Query: 60 KKKEKNKNKNRKEEKKKKKKRRTKKKEK 87
KK + K R + KK +++ R +KK K
Sbjct: 273 KKLTGKQRKARVKAKKAQRRERLQKKIK 300
Score = 30.4 bits (69), Expect = 1.6
Identities = 20/80 (25%), Positives = 37/80 (46%)
Query: 98 KKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKK 157
K+E ++ KK +K E+ K+A + K +K K K +K ++ K
Sbjct: 213 KEEDPDKYKKQFSKYIKAGVGPDSLEDMYKKAHAAIRANPSKVKKKKKKKKKVVHKKYKT 272
Query: 158 KKKKKKKKKRTKKKEEEKRK 177
KK K++K K ++ +R+
Sbjct: 273 KKLTGKQRKARVKAKKAQRR 292
>gnl|CDD|236978 PRK11778, PRK11778, putative inner membrane peptidase;
Provisional.
Length = 330
Score = 33.3 bits (77), Expect = 0.19
Identities = 14/62 (22%), Positives = 27/62 (43%)
Query: 23 KNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRT 82
+ + ++ E + T E+ K+ K + + KK K K + K K+E K K +
Sbjct: 30 AQRKKSQKGELEVTNLNEQYKEMKEELKAALLDKKELKAWHKAQKKKEKQEAKAAKAKSK 89
Query: 83 KK 84
+
Sbjct: 90 PR 91
Score = 32.1 bits (74), Expect = 0.46
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 113 KNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKE 172
+ KS+K E E E+ K K++ K +KE + K +KKK+K++ + K +
Sbjct: 30 AQRKKSQKGELEVTNLNEQYK--EMKEELKAALLDKKELKAWHKAQKKKEKQEAKAAKAK 87
Query: 173 EEKR 176
+ R
Sbjct: 88 SKPR 91
Score = 31.0 bits (71), Expect = 1.1
Identities = 14/60 (23%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 55 KKKRTKKKE-KNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEK 113
++K+++K E + N N + ++ K++ + +K K +KKKE +E K +
Sbjct: 31 QRKKSQKGELEVTNLNEQYKEMKEELKAALLDKKELKAWHKAQKKKEKQEAKAAKAKSKP 90
Score = 30.6 bits (70), Expect = 1.6
Identities = 16/71 (22%), Positives = 29/71 (40%), Gaps = 11/71 (15%)
Query: 97 KKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEK 156
+KK + E + T E+ K + + + E K + +KK +E+++
Sbjct: 32 RKKSQKGELEVTNLNEQYKEMKEELKAALLDKKELKAWHKAQKK-----------KEKQE 80
Query: 157 KKKKKKKKKKR 167
K K K K R
Sbjct: 81 AKAAKAKSKPR 91
Score = 30.2 bits (69), Expect = 1.9
Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 5/65 (7%)
Query: 74 KKKKKKRRTKKKEKNKNKSRKEEKK--KEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEE 131
++KK ++ + + N N+ KE K+ K A +KK+ K K +K+E+++ K A+
Sbjct: 30 AQRKKSQKGELEVTNLNEQYKEMKEELKAALLDKKELKAWHK---AQKKKEKQEAKAAKA 86
Query: 132 KKKKR 136
K K R
Sbjct: 87 KSKPR 91
Score = 30.2 bits (69), Expect = 2.2
Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Query: 44 KNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEE 103
+ KS+K E + ++ K + K KK+ K K + K K+E K +
Sbjct: 30 AQRKKSQKGELEVTNLNEQYKEMKEELKAALLDKKEL--KAWHKAQKKKEKQEAKAAKAK 87
Query: 104 EKKK 107
K +
Sbjct: 88 SKPR 91
Score = 29.4 bits (67), Expect = 3.2
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 132 KKKKRTKKKE------KNKNKSRKEEEEEEK-KKKKKKKKKKRTKKKEEEKRKNEKAVRL 184
++K+++K E + K KEE + KK+ K K KKKE+++ K KA
Sbjct: 30 AQRKKSQKGELEVTNLNEQYKEMKEELKAALLDKKELKAWHKAQKKKEKQEAKAAKAKSK 89
Query: 185 TKL 187
+L
Sbjct: 90 PRL 92
>gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional.
Length = 746
Score = 33.5 bits (77), Expect = 0.19
Identities = 15/69 (21%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Query: 44 KNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEE 103
K+K + +EEK N N N+ ++++K + + E + +K+K +
Sbjct: 212 KSKEININKEEKNN---GSNVNNNGNKNNKEEQKGNDLSNELEDISLGPLEYDKEKLEKI 268
Query: 104 EKKKTKNKE 112
+ K K K+
Sbjct: 269 KDLKEKAKK 277
Score = 33.2 bits (76), Expect = 0.30
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Query: 22 NKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRR 81
K+K +EEK N NKN KEE+K + ++ + E K+K ++
Sbjct: 211 IKSKEININKEEKNNGSNVNNNGNKNN--KEEQKGNDLSNELEDISLGPLEYDKEKLEKI 268
Query: 82 TKKKEKNKN 90
KEK K
Sbjct: 269 KDLKEKAKK 277
Score = 32.0 bits (73), Expect = 0.63
Identities = 23/92 (25%), Positives = 37/92 (40%), Gaps = 11/92 (11%)
Query: 94 KEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEE 153
K ++ +EEK N N NK+ KEE++ + E + E +K K K ++
Sbjct: 212 KSKEININKEEKNNGSNVNNNGNKNNKEEQKGNDLSNELEDISLGPLEYDKEKLEKIKDL 271
Query: 154 EEKKKK-----------KKKKKKKRTKKKEEE 174
+EK KK K K + E+
Sbjct: 272 KEKAKKLGISIILFDDMTKNKTTNYKIQNEDP 303
Score = 30.8 bits (70), Expect = 1.6
Identities = 22/99 (22%), Positives = 36/99 (36%), Gaps = 14/99 (14%)
Query: 64 KNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEE 123
K+K N +E+K KN E++K + + + KE+
Sbjct: 212 KSKEININKEEKNNGSNVNNNGNKNNK-----EEQKGNDLSNELEDISLGPL-EYDKEKL 265
Query: 124 EKKKEAEEKKKKRTKK--------KEKNKNKSRKEEEEE 154
EK K+ +EK KK K K N + E+ +
Sbjct: 266 EKIKDLKEKAKKLGISIILFDDMTKNKTTNYKIQNEDPD 304
Score = 30.1 bits (68), Expect = 2.5
Identities = 23/101 (22%), Positives = 35/101 (34%), Gaps = 12/101 (11%)
Query: 65 NKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEE 124
K+K K++K NKN EE+K + E E +
Sbjct: 211 IKSKEININKEEKNNGSNVNNNGNKN---------NKEEQKGNDLSNELEDISLGPLEYD 261
Query: 125 KKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKK 165
K+K +K K K+K K S ++ K K K +
Sbjct: 262 KEK---LEKIKDLKEKAKKLGISIILFDDMTKNKTTNYKIQ 299
Score = 30.1 bits (68), Expect = 2.7
Identities = 17/67 (25%), Positives = 26/67 (38%)
Query: 108 TKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKR 167
K+KE N NK K K K +K N+ + K+K +K K
Sbjct: 211 IKSKEININKEEKNNGSNVNNNGNKNNKEEQKGNDLSNELEDISLGPLEYDKEKLEKIKD 270
Query: 168 TKKKEEE 174
K+K ++
Sbjct: 271 LKEKAKK 277
Score = 29.7 bits (67), Expect = 3.5
Identities = 19/88 (21%), Positives = 32/88 (36%), Gaps = 4/88 (4%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEE-EKKKRTK 60
N +E+K KN + +K + + + E + KE+ EK K K
Sbjct: 216 ININKEEKNNGSNVNNNGNKNNKEEQKGNDL---SNELEDISLGPLEYDKEKLEKIKDLK 272
Query: 61 KKEKNKNKNRKEEKKKKKKRRTKKKEKN 88
+K K + K + T K +N
Sbjct: 273 EKAKKLGISIILFDDMTKNKTTNYKIQN 300
Score = 29.3 bits (66), Expect = 4.1
Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 5/86 (5%)
Query: 96 EKKKEAEEEKK----KTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEE 151
E+K E KK T K K N KEE+ K K+++K + S + E
Sbjct: 193 ERKNELPHLKKLIILDTLIKSKEIN-INKEEKNNGSNVNNNGNKNNKEEQKGNDLSNELE 251
Query: 152 EEEEKKKKKKKKKKKRTKKKEEEKRK 177
+ + K+K ++ K +E+ +K
Sbjct: 252 DISLGPLEYDKEKLEKIKDLKEKAKK 277
Score = 29.3 bits (66), Expect = 4.2
Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 6/72 (8%)
Query: 8 KKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKN 67
K K+ ++K N + + K + +K + S + E+ + +K K
Sbjct: 212 KSKEININKEEKNNGSNVNNNGNKNNK------EEQKGNDLSNELEDISLGPLEYDKEKL 265
Query: 68 KNRKEEKKKKKK 79
+ K+ K+K KK
Sbjct: 266 EKIKDLKEKAKK 277
Score = 28.1 bits (63), Expect = 10.0
Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Query: 125 KKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKAVRL 184
K KE K+++ N N ++ +EE++ + + E +K K EK L
Sbjct: 212 KSKEININKEEKNNGSNVNNNGNKNNKEEQKGNDLSNELEDISLGPLEYDKEKLEKIKDL 271
Query: 185 -TKLSAFGIS 193
K GIS
Sbjct: 272 KEKAKKLGIS 281
>gnl|CDD|236048 PRK07561, PRK07561, DNA topoisomerase I subunit omega; Validated.
Length = 859
Score = 33.6 bits (78), Expect = 0.20
Identities = 7/49 (14%), Positives = 15/49 (30%), Gaps = 5/49 (10%)
Query: 123 EEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKK 171
EK ++ K K + +K K++ ++ K
Sbjct: 815 AEKPEKLRYLADAPAKDPAGKKAAVKF-----SRKTKQQYVASEKDGKA 858
Score = 30.9 bits (71), Expect = 1.5
Identities = 8/42 (19%), Positives = 16/42 (38%)
Query: 57 KRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKK 98
K K + + KK + ++K ++ S K+ K
Sbjct: 817 KPEKLRYLADAPAKDPAGKKAAVKFSRKTKQQYVASEKDGKA 858
Score = 30.1 bits (69), Expect = 2.2
Identities = 6/40 (15%), Positives = 12/40 (30%)
Query: 70 RKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTK 109
+ E+ + K K + K K+ +K
Sbjct: 817 KPEKLRYLADAPAKDPAGKKAAVKFSRKTKQQYVASEKDG 856
Score = 30.1 bits (69), Expect = 2.3
Identities = 14/69 (20%), Positives = 24/69 (34%), Gaps = 15/69 (21%)
Query: 117 KSRKEEEEKKKEA----EEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKE 172
K R+ +EA EK +K + K KK K ++K +
Sbjct: 798 KGRETRAPTVEEALELLAEKPEKLRYLADAPA-----------KDPAGKKAAVKFSRKTK 846
Query: 173 EEKRKNEKA 181
++ +EK
Sbjct: 847 QQYVASEKD 855
Score = 29.4 bits (67), Expect = 3.8
Identities = 6/33 (18%), Positives = 11/33 (33%)
Query: 55 KKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEK 87
K K + K K++ ++K K
Sbjct: 825 ADAPAKDPAGKKAAVKFSRKTKQQYVASEKDGK 857
Score = 29.4 bits (67), Expect = 4.7
Identities = 11/47 (23%), Positives = 15/47 (31%), Gaps = 3/47 (6%)
Query: 32 EEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKK 78
EK K + ++ KK K K K + EK K
Sbjct: 815 AEKPEKLRYLADA---PAKDPAGKKAAVKFSRKTKQQYVASEKDGKA 858
Score = 29.0 bits (66), Expect = 5.1
Identities = 10/43 (23%), Positives = 18/43 (41%)
Query: 121 EEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKK 163
E+ EK + + K K+ SRK +++ +K K
Sbjct: 816 EKPEKLRYLADAPAKDPAGKKAAVKFSRKTKQQYVASEKDGKA 858
Score = 29.0 bits (66), Expect = 5.4
Identities = 10/60 (16%), Positives = 17/60 (28%), Gaps = 16/60 (26%)
Query: 5 KEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEK 64
EK +K + K K SRK +++ ++K K
Sbjct: 814 LAEKPEKLRYLADAP----------------AKDPAGKKAAVKFSRKTKQQYVASEKDGK 857
>gnl|CDD|212055 cd11486, SLC5sbd_SGLT1, Na(+)/glucose cotransporter SGLT1;solute
binding domain. Human SGLT1 (hSGLT1) is a
high-affinity/low-capacity glucose transporter, which
can also transport galactose. In the transport
mechanism, two Na+ ions first bind to the extracellular
side of the transporter and induce a conformational
change in the glucose binding site. This results in an
increased affinity for glucose. A second conformational
change in the transporter follows, bringing the Na+ and
glucose binding sites to the inner surface of the
membrane. Glucose is then released, followed by the Na+
ions. In the process, hSGLT1 is also able to transport
water and urea and may be a major pathway for transport
of these across the intestinal brush-border membrane.
hSGLT1 is encoded by the SLC5A1 gene and expressed
mostly in the intestine, but also in the trachea,
kidney, heart, brain, testis, and prostate. The
WHO/UNICEF oral rehydration solution (ORS) for the
treatment of secretory diarrhea contains salt and
glucose. The glucose, along with sodium ions, is
transported by hSGLT1 and water is either co-transported
along with these or follows by osmosis. Mutations in
SGLT1 are associated with intestinal glucose galactose
malabsorption (GGM). Up-regulation of intestinal SGLT1
may protect against enteric infections. SGLT1 is
expressed in colorectal, head and neck, and prostate
tumors. Epidermal growth factor receptor (EGFR)
functions in cell survival by stabilizing SGLT1, and
thereby maintaining intracellular glucose levels. SGLT1
is predicted to have 14 membrane-spanning regions. This
subgroup belongs to the solute carrier 5
(SLC5)transporter family.
Length = 635
Score = 33.7 bits (77), Expect = 0.20
Identities = 17/72 (23%), Positives = 25/72 (34%), Gaps = 9/72 (12%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKN------KKNKNKSRKEEE- 54
+N EE+ + E EE ++ +K N + K +EEE
Sbjct: 538 RNSTEERIDLDADDWTEDEDENEMETDEERKKPGCCRKAYNWFCGFDQGKAPKLTEEEEA 597
Query: 55 --KKKRTKKKEK 64
K K T EK
Sbjct: 598 ALKMKMTDTSEK 609
Score = 32.5 bits (74), Expect = 0.46
Identities = 14/72 (19%), Positives = 25/72 (34%), Gaps = 9/72 (12%)
Query: 25 KSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKK---------EKNKNKNRKEEKK 75
++ EE + +++ EE KK +K + K +EE+
Sbjct: 538 RNSTEERIDLDADDWTEDEDENEMETDEERKKPGCCRKAYNWFCGFDQGKAPKLTEEEEA 597
Query: 76 KKKKRRTKKKEK 87
K + T EK
Sbjct: 598 ALKMKMTDTSEK 609
>gnl|CDD|215180 PLN02316, PLN02316, synthase/transferase.
Length = 1036
Score = 33.7 bits (77), Expect = 0.20
Identities = 19/72 (26%), Positives = 40/72 (55%), Gaps = 14/72 (19%)
Query: 95 EEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEE 154
EEK++E E K KEE E++++AEE++++ +K ++++ + E E
Sbjct: 252 EEKRRELE--------------KLAKEEAERERQAEEQRRREEEKAAMEADRAQAKAEVE 297
Query: 155 EKKKKKKKKKKK 166
++++K + KK
Sbjct: 298 KRREKLQNLLKK 309
Score = 31.8 bits (72), Expect = 0.81
Identities = 16/61 (26%), Positives = 37/61 (60%)
Query: 123 EEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKAV 182
EEK++E E+ K+ +++ + + + R+EEE+ + + + K + K++E+ + +KA
Sbjct: 252 EEKRRELEKLAKEEAERERQAEEQRRREEEKAAMEADRAQAKAEVEKRREKLQNLLKKAS 311
Query: 183 R 183
R
Sbjct: 312 R 312
Score = 30.6 bits (69), Expect = 1.7
Identities = 13/56 (23%), Positives = 36/56 (64%), Gaps = 3/56 (5%)
Query: 83 KKKEKNKNKSRKEEKKKEAEEEKKKTKNK---EKNKNKSRKEEEEKKKEAEEKKKK 135
K++E K + E++++AEE++++ + K E ++ +++ E E+++++ + KK
Sbjct: 254 KRRELEKLAKEEAERERQAEEQRRREEEKAAMEADRAQAKAEVEKRREKLQNLLKK 309
Score = 28.7 bits (64), Expect = 7.6
Identities = 12/54 (22%), Positives = 34/54 (62%), Gaps = 3/54 (5%)
Query: 6 EEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRT 59
EEK+++ ++ K++ + + R+ EE+ +R ++K + ++ +++ E EK++
Sbjct: 252 EEKRRELEKLAKEEAE---RERQAEEQRRREEEKAAMEADRAQAKAEVEKRREK 302
>gnl|CDD|217840 pfam04006, Mpp10, Mpp10 protein. This family includes proteins
related to Mpp10 (M phase phosphoprotein 10). The U3
small nucleolar ribonucleoprotein (snoRNP) is required
for three cleavage events that generate the mature 18S
rRNA from the pre-rRNA. In Saccharomyces cerevisiae,
depletion of Mpp10, a U3 snoRNP-specific protein, halts
18S rRNA production and impairs cleavage at the three U3
snoRNP-dependent sites.
Length = 613
Score = 33.4 bits (76), Expect = 0.20
Identities = 27/152 (17%), Positives = 64/152 (42%)
Query: 29 EEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKN 88
++E +++K ++ + KE ++ +KK + K K + + E
Sbjct: 151 LSDDETEDDEEKKMEEEEAGEEKESVEQATREKKFDKSGVDDKFFKLDEMNEFLEATEAE 210
Query: 89 KNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSR 148
+ + +E E + K+ S ++EE+ ++ E + K++ K +
Sbjct: 211 EEAALGDEDDFEDYFQDDSEDGKDDEDFGSGEDEEDDEEGNIEYEDFFDPKEKDKKKDAG 270
Query: 149 KEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEK 180
+ E E+ + K+ KK+ K EEE ++++
Sbjct: 271 DDAELEDDEPDKEAVKKEADSKPEEEDEEDDE 302
Score = 31.9 bits (72), Expect = 0.79
Identities = 23/156 (14%), Positives = 64/156 (41%), Gaps = 1/156 (0%)
Query: 5 KEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEK 64
EE+ + + +++E+ + + E++ + N ++ K KK+
Sbjct: 209 AEEEAALGDEDDFEDYFQDDSEDGKDDEDFGSGEDEEDDEEGNIEYEDFFDPKEKDKKKD 268
Query: 65 NKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNK-SRKEEE 123
+ E+ + K+ K+ + + +E+ ++E ++++++ +K K E
Sbjct: 269 AGDDAELEDDEPDKEAVKKEADSKPEEEDEEDDEQEDDQDEEEPPEAAMDKVKLDEPVLE 328
Query: 124 EKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKK 159
E+ ++ K++ K K + + E+E K
Sbjct: 329 GVDLESPKELSSFEKRQAKLKQQIEQLEKENLAPKS 364
Score = 31.5 bits (71), Expect = 1.0
Identities = 27/146 (18%), Positives = 65/146 (44%), Gaps = 9/146 (6%)
Query: 28 KEEEEEKRTKKKEKNKKNKNKSRKEE---------EKKKRTKKKEKNKNKNRKEEKKKKK 78
E EE+ E + ++ + E+ + + ++ + ++ + K+K K
Sbjct: 206 ATEAEEEAALGDEDDFEDYFQDDSEDGKDDEDFGSGEDEEDDEEGNIEYEDFFDPKEKDK 265
Query: 79 KRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTK 138
K+ + ++ +E K+ + K + +++E ++ + ++EEE + A +K K
Sbjct: 266 KKDAGDDAELEDDEPDKEAVKKEADSKPEEEDEEDDEQEDDQDEEEPPEAAMDKVKLDEP 325
Query: 139 KKEKNKNKSRKEEEEEEKKKKKKKKK 164
E +S KE EK++ K K++
Sbjct: 326 VLEGVDLESPKELSSFEKRQAKLKQQ 351
Score = 30.0 bits (67), Expect = 2.4
Identities = 26/185 (14%), Positives = 75/185 (40%), Gaps = 6/185 (3%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKK 61
+KE ++ + + K +K K +E + + E ++ + E +
Sbjct: 170 GEEKESVEQATREKKFDKSGVDDKFFKLDEMNEFLEATEAEEEAALGDEDDFEDYFQDDS 229
Query: 62 K--EKNKNKNRKEEKKKKKKRRTKKKE----KNKNKSRKEEKKKEAEEEKKKTKNKEKNK 115
+ + +++ E+++ ++ + ++ K K+K + E E+++ + +K
Sbjct: 230 EDGKDDEDFGSGEDEEDDEEGNIEYEDFFDPKEKDKKKDAGDDAELEDDEPDKEAVKKEA 289
Query: 116 NKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEK 175
+ +EE+E+ E E+ + + + E E + K+ K++ + K
Sbjct: 290 DSKPEEEDEEDDEQEDDQDEEEPPEAAMDKVKLDEPVLEGVDLESPKELSSFEKRQAKLK 349
Query: 176 RKNEK 180
++ E+
Sbjct: 350 QQIEQ 354
Score = 28.4 bits (63), Expect = 7.4
Identities = 30/174 (17%), Positives = 70/174 (40%), Gaps = 5/174 (2%)
Query: 4 KKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKE 63
K EE++ +++ + ++ + K K ++K K E N+ + + EE+ + +
Sbjct: 163 KMEEEEAGEEKESVEQATREKKFDKSGVDDKFFKLDEMNEFLEAT--EAEEEAALGDEDD 220
Query: 64 KNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKK---EAEEEKKKTKNKEKNKNKSRK 120
E K + +++ ++ E + E++KKK +
Sbjct: 221 FEDYFQDDSEDGKDDEDFGSGEDEEDDEEGNIEYEDFFDPKEKDKKKDAGDDAELEDDEP 280
Query: 121 EEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEE 174
++E KKEA+ K ++ ++ ++ ++ +EE E K K + E
Sbjct: 281 DKEAVKKEADSKPEEEDEEDDEQEDDQDEEEPPEAAMDKVKLDEPVLEGVDLES 334
Score = 28.4 bits (63), Expect = 9.4
Identities = 24/158 (15%), Positives = 65/158 (41%), Gaps = 3/158 (1%)
Query: 16 TKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEE--KKKRTKKKEKNKNKNRKEE 73
T+ +E+ + E+ + ++ S ++EE ++ + ++ K + ++
Sbjct: 207 TEAEEEAALGDEDDFEDYFQDDSEDGKDDEDFGSGEDEEDDEEGNIEYEDFFDPKEKDKK 266
Query: 74 KKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKK 133
K + E +K +KE K EE+++ + ++ + E K + +E
Sbjct: 267 KDAGDDAELEDDEPDKEAVKKEADSKPEEEDEEDDEQEDDQDEEEPPEAAMDKVKLDEPV 326
Query: 134 KKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKK 171
+ + K S E+ + + K++ ++ +K+ K
Sbjct: 327 LEGVDLES-PKELSSFEKRQAKLKQQIEQLEKENLAPK 363
>gnl|CDD|129661 TIGR00570, cdk7, CDK-activating kinase assembly factor MAT1. All
proteins in this family for which functions are known
are cyclin dependent protein kinases that are components
of TFIIH, a complex that is involved in nucleotide
excision repair and transcription initiation. Also known
as MAT1 (menage a trois 1). This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 309
Score = 33.2 bits (76), Expect = 0.20
Identities = 26/101 (25%), Positives = 49/101 (48%)
Query: 3 NKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKK 62
KK E +K+ + +K K K+ +EE EE +KE+ ++ + +KEEE+++ K+K
Sbjct: 119 KKKIETYQKENKDVIQKNKEKSTREQEELEEALEFEKEEEEQRRLLLQKEEEEQQMNKRK 178
Query: 63 EKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEE 103
K + E + +KN K + +K + E+
Sbjct: 179 NKQALLDELETSTLPAAELIAQHKKNSVKLEMQVEKPKPEK 219
Score = 32.9 bits (75), Expect = 0.27
Identities = 25/104 (24%), Positives = 46/104 (44%), Gaps = 16/104 (15%)
Query: 75 KKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKK 134
KKK T +KE + +EK +EE ++ EK + + R+ +K++E ++ K
Sbjct: 117 NTKKKIETYQKENKDVIQKNKEKSTREQEELEEALEFEKEEEEQRRLLLQKEEEEQQMNK 176
Query: 135 KRTKKK----------------EKNKNKSRKEEEEEEKKKKKKK 162
++ K+ ++K S K E + EK K +K
Sbjct: 177 RKNKQALLDELETSTLPAAELIAQHKKNSVKLEMQVEKPKPEKP 220
Score = 28.2 bits (63), Expect = 7.3
Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 8/71 (11%)
Query: 95 EEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEE 154
++K + ++E K K K K+ +EE E+ E E K+E+ + + ++EEE
Sbjct: 119 KKKIETYQKENKDVIQKNKEKSTREQEELEEALEFE--------KEEEEQRRLLLQKEEE 170
Query: 155 EKKKKKKKKKK 165
E++ K+K K+
Sbjct: 171 EQQMNKRKNKQ 181
Score = 28.2 bits (63), Expect = 8.1
Identities = 22/68 (32%), Positives = 41/68 (60%), Gaps = 6/68 (8%)
Query: 121 EEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEE------ 174
E +KK E +K+ K +K K K+ +EE EE + +K++++++R ++EE
Sbjct: 116 ENTKKKIETYQKENKDVIQKNKEKSTREQEELEEALEFEKEEEEQRRLLLQKEEEEQQMN 175
Query: 175 KRKNEKAV 182
KRKN++A+
Sbjct: 176 KRKNKQAL 183
>gnl|CDD|223095 COG0016, PheS, Phenylalanyl-tRNA synthetase alpha subunit
[Translation, ribosomal structure and biogenesis].
Length = 335
Score = 33.4 bits (77), Expect = 0.21
Identities = 11/81 (13%), Positives = 24/81 (29%), Gaps = 3/81 (3%)
Query: 95 EEKKKEAEEEKKKT---KNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEE 151
+ A + K K K K + +K + ++++ N+ K E+
Sbjct: 14 IAAIELASDLLKALEELKVKYLGKKGVLTDLLKKLGKLSPLEERKEVGALINELKKEVED 73
Query: 152 EEEEKKKKKKKKKKKRTKKKE 172
E + + E
Sbjct: 74 AITELTPELEAAGLWERLAFE 94
Score = 29.5 bits (67), Expect = 3.7
Identities = 10/68 (14%), Positives = 23/68 (33%), Gaps = 6/68 (8%)
Query: 44 KNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKN--KSRKEEKKKEA 101
K K +K K + + EE+K+ + K++ ++ E +
Sbjct: 31 KVKYLGKKGVLTDLLKKLGKLSP----LEERKEVGALINELKKEVEDAITELTPELEAAG 86
Query: 102 EEEKKKTK 109
E+ +
Sbjct: 87 LWERLAFE 94
Score = 28.0 bits (63), Expect = 9.8
Identities = 14/64 (21%), Positives = 20/64 (31%)
Query: 60 KKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSR 119
K K K + KK K ++ K E KK+ + + T E R
Sbjct: 31 KVKYLGKKGVLTDLLKKLGKLSPLEERKEVGALINELKKEVEDAITELTPELEAAGLWER 90
Query: 120 KEEE 123
E
Sbjct: 91 LAFE 94
>gnl|CDD|227507 COG5180, PBP1, Protein interacting with poly(A)-binding protein
[RNA processing and modification].
Length = 654
Score = 33.5 bits (76), Expect = 0.21
Identities = 30/158 (18%), Positives = 62/158 (39%), Gaps = 5/158 (3%)
Query: 16 TKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKK 75
T+ +K+ + + +E +R K+ + N EE ++ ++
Sbjct: 173 TEVIDKSSPSYKSKVQEARRIAKEIELSATTNIHIAEERGLGNDDSGLDEEDLYSGVVRR 232
Query: 76 KKKKRRTKKKEKNKNKSRKEEKKKEAEE----EKKKTKNKEKNKNKSRKEEEEKKKEAEE 131
+ R + NK ++EK A++ + TK K + + E +K EA
Sbjct: 233 GDECRSAESS-NASNKENRQEKPAAAKQPHHMDDDGTKRKMVIEIEGLSLLENRKPEAVS 291
Query: 132 KKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTK 169
+ + + + S +E+E++ K+KK K TK
Sbjct: 292 APEAVSPQSKSEGPSSGQEKEKQIKEKKSFSYGWKHTK 329
Score = 28.9 bits (64), Expect = 5.6
Identities = 32/170 (18%), Positives = 59/170 (34%), Gaps = 6/170 (3%)
Query: 9 KKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKS----RKEEEKKKRTKKKEK 64
+ ++EK + ++ TK+K + + S RK E +
Sbjct: 241 SSNASNKENRQEKPAAAKQPHHMDDDGTKRKMVIE-IEGLSLLENRKPEAVSAPEAVSPQ 299
Query: 65 NKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEE 124
+K++ ++K+K+ + KK K K + K E K+K K S + +
Sbjct: 300 SKSEGPSSGQEKEKQIKEKKSFSYGWKHTKFDSSKNLLE-VIKSKFKSLFDISSGELKWG 358
Query: 125 KKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEE 174
K E K K K K +S + + KK K + +
Sbjct: 359 SKPPWEAKAVSIATKVSKPKKESVRSGSKAAKKSPSTKHTTRSSTSLRRR 408
Score = 28.2 bits (62), Expect = 9.2
Identities = 24/125 (19%), Positives = 43/125 (34%), Gaps = 10/125 (8%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTK----------KKEKNKKNKNKSRK 51
+ + K + ++KEK + + K TK K K K + S
Sbjct: 294 EAVSPQSKSEGPSSGQEKEKQIKEKKSFSYGWKHTKFDSSKNLLEVIKSKFKSLFDISSG 353
Query: 52 EEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNK 111
E + + + K + K K KK+ R+ K K+ S K + ++ +
Sbjct: 354 ELKWGSKPPWEAKAVSIATKVSKPKKESVRSGSKAAKKSPSTKHTTRSSTSLRRRNHGSF 413
Query: 112 EKNKN 116
KN
Sbjct: 414 FGAKN 418
>gnl|CDD|223003 PHA03169, PHA03169, hypothetical protein; Provisional.
Length = 413
Score = 33.4 bits (76), Expect = 0.21
Identities = 12/82 (14%), Positives = 30/82 (36%)
Query: 74 KKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKK 133
+++ R K + + + AE+ ++T++ + +SR E+E++ +
Sbjct: 35 RRRGTAARAAKPAPPAPTTSGPQVRAVAEQGHRQTESDTETAEESRHGEKEERGQGGPSG 94
Query: 134 KKRTKKKEKNKNKSRKEEEEEE 155
+ S EE
Sbjct: 95 SGSESVGSPTPSPSGSAEELAS 116
Score = 29.9 bits (67), Expect = 2.4
Identities = 14/82 (17%), Positives = 32/82 (39%)
Query: 74 KKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKK 133
+K K+ R T + + R +++A + K + + + E+
Sbjct: 6 RKAKRSRHTLRSSCRGHCKRHGGTREQAGRRRGTAARAAKPAPPAPTTSGPQVRAVAEQG 65
Query: 134 KKRTKKKEKNKNKSRKEEEEEE 155
++T+ + +SR E+EE
Sbjct: 66 HRQTESDTETAEESRHGEKEER 87
>gnl|CDD|235040 PRK02463, PRK02463, OxaA-like protein precursor; Provisional.
Length = 307
Score = 33.2 bits (76), Expect = 0.22
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 98 KKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRK 149
+K+ EE K K RK+ + +A K+ KKK +N K RK
Sbjct: 256 RKQIAEEFAKNPPKAYKSPSGRKDVTPSQNQAIASLPKK-KKKNRNAGKQRK 306
Score = 28.5 bits (64), Expect = 7.1
Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 3/55 (5%)
Query: 35 RTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNK 89
R + E+ KN K+ K +K + + KKKKK R K++ +
Sbjct: 256 RKQIAEEFAKNPPKAYKSPSGRKDVTPSQNQAIASL---PKKKKKNRNAGKQRKR 307
>gnl|CDD|216403 pfam01271, Granin, Granin (chromogranin or secretogranin).
Length = 585
Score = 33.4 bits (76), Expect = 0.22
Identities = 25/148 (16%), Positives = 62/148 (41%), Gaps = 2/148 (1%)
Query: 31 EEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKK--RRTKKKEKN 88
E + + K ++ E ++ ++K K+ R+ E ++K +RT + +
Sbjct: 104 PRENQPYNLQVEKNFPTDHSEDYETQQWEEEKLKHMKFPRRYEDNSEEKHSKRTNEIVEV 163
Query: 89 KNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSR 148
+ + K EE K + K K + E E+ ++ E+ ++ ++
Sbjct: 164 FYNPQSQATLKSVFEEVGKLDGQSKQKRERSDEREKSYQDDEDDTYRQNNIPYEDVVGGE 223
Query: 149 KEEEEEEKKKKKKKKKKKRTKKKEEEKR 176
EE ++ + +++ KR+K++ + R
Sbjct: 224 DWNPIEEGEEDQTQEEVKRSKERTHKGR 251
Score = 28.8 bits (64), Expect = 6.0
Identities = 21/179 (11%), Positives = 69/179 (38%), Gaps = 7/179 (3%)
Query: 10 KKKKRRTKKKEKNKNKSRKEE----EEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKN 65
+K +++ K +E + N + + + + +E + T+ +
Sbjct: 37 EKLRKQAKSEESSPNYNSYQGVRLLRDLADQSEASTLSSRSRDGLSDEWMQIITEALRQA 96
Query: 66 KNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRK---EE 122
+N+ ++ + +K + S E ++ EE+ K K + ++ S + +
Sbjct: 97 ENEPGGHPRENQPYNLQVEKNFPTDHSEDYETQQWEEEKLKHMKFPRRYEDNSEEKHSKR 156
Query: 123 EEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKA 181
+ E + + K + + + + ++K+++ +++K +++ R+N
Sbjct: 157 TNEIVEVFYNPQSQATLKSVFEEVGKLDGQSKQKRERSDEREKSYQDDEDDTYRQNNIP 215
>gnl|CDD|240377 PTZ00352, PTZ00352, 60S ribosomal protein L13; Provisional.
Length = 212
Score = 32.8 bits (75), Expect = 0.22
Identities = 23/104 (22%), Positives = 40/104 (38%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKK 61
N K K K ++ K K +K++ K E +RT K
Sbjct: 109 LNVKRLKAYLSKLVLFPRKGKKPKKGFAGIPADTSKEEVVALPVKQNKNSEVIPFQRTPK 168
Query: 62 KEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEK 105
+EK + ++E + + K K +KE+KK+ E++K
Sbjct: 169 REKARVITKEERAFNAYRTLRQAKLNAKFVGKKEKKKQAKEKKK 212
Score = 30.5 bits (69), Expect = 1.2
Identities = 20/117 (17%), Positives = 46/117 (39%)
Query: 42 NKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEA 101
+ + +N+S++ + K +K + KK KK + K+
Sbjct: 96 DHRRRNRSQESLNLNVKRLKAYLSKLVLFPRKGKKPKKGFAGIPADTSKEEVVALPVKQN 155
Query: 102 EEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKK 158
+ + + + K+R +E++ + ++ K K K K+++ +EKKK
Sbjct: 156 KNSEVIPFQRTPKREKARVITKEERAFNAYRTLRQAKLNAKFVGKKEKKKQAKEKKK 212
>gnl|CDD|221937 pfam13148, DUF3987, Protein of unknown function (DUF3987). A
family of uncharacterized proteins found by clustering
human gut metagenomic sequences.
Length = 379
Score = 33.0 bits (76), Expect = 0.24
Identities = 19/60 (31%), Positives = 34/60 (56%)
Query: 99 KEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKK 158
+E EEE ++ +E + ++ KE E +K+ EKK K+ KK K++ +E E E ++
Sbjct: 64 EEIEEELREEYEEELKEYEAEKEIWEAEKKGLEKKAKKAIKKGKDEEALAEELLELEAEE 123
Score = 33.0 bits (76), Expect = 0.30
Identities = 14/51 (27%), Positives = 27/51 (52%)
Query: 127 KEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRK 177
+E EE+ ++ +++ K ++ E E+K +KK KK + K EE +
Sbjct: 64 EEIEEELREEYEEELKEYEAEKEIWEAEKKGLEKKAKKAIKKGKDEEALAE 114
Score = 30.7 bits (70), Expect = 1.5
Identities = 13/59 (22%), Positives = 29/59 (49%)
Query: 47 NKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEK 105
+ R+E E++ + + EK + K+ +KK K+ KK + + + + + + E E
Sbjct: 68 EELREEYEEELKEYEAEKEIWEAEKKGLEKKAKKAIKKGKDEEALAEELLELEAEEPEP 126
Score = 29.5 bits (67), Expect = 3.1
Identities = 9/48 (18%), Positives = 23/48 (47%)
Query: 29 EEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKK 76
EE E+ ++ ++ + K E++ ++ KK K K+ + ++
Sbjct: 68 EELREEYEEELKEYEAEKEIWEAEKKGLEKKAKKAIKKGKDEEALAEE 115
Score = 29.2 bits (66), Expect = 4.5
Identities = 12/67 (17%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 70 RKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEA 129
+ ++ +++ + + EK ++ K+ +K+A KK K + + + + E + +E
Sbjct: 68 EELREEYEEELKEYEAEKEIWEAEKKGLEKKA---KKAIKKGKDEEALAEELLELEAEEP 124
Query: 130 EEKKKKR 136
E + R
Sbjct: 125 EPPLRPR 131
Score = 28.8 bits (65), Expect = 5.1
Identities = 12/59 (20%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 52 EEEKKKRTKKKEKNKNK----NRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKK 106
EE +++ ++ ++ + + +++ +KK ++ KK K++ +E + EAEE +
Sbjct: 68 EELREEYEEELKEYEAEKEIWEAEKKGLEKKAKKAIKKGKDEEALAEELLELEAEEPEP 126
Score = 28.8 bits (65), Expect = 5.9
Identities = 17/60 (28%), Positives = 32/60 (53%)
Query: 28 KEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEK 87
+E EEE R + +E+ K+ + + E +KK +KK K K K+E+ ++ + E+
Sbjct: 64 EEIEEELREEYEEELKEYEAEKEIWEAEKKGLEKKAKKAIKKGKDEEALAEELLELEAEE 123
>gnl|CDD|165222 PHA02896, PHA02896, A-type inclusion like protein; Provisional.
Length = 616
Score = 33.5 bits (76), Expect = 0.24
Identities = 31/196 (15%), Positives = 72/196 (36%), Gaps = 18/196 (9%)
Query: 14 RRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEE 73
+ N +R E+E++ + N +++ K+E + + + ++++
Sbjct: 374 KMKNCPSTNGTLNRDEDEDKIEEDNDDYNNDDEDDLIKDEAPILNRRHGQMDDKYDKRDH 433
Query: 74 KKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKK 133
+ K K E + K + ++ + + K+ N + K+ E++ +A
Sbjct: 434 RYKNNKYDIYDDESPRYKYKDDDYDDNDDNDDDHIIPKKANNLEDAKDFEDEMMDAIADD 493
Query: 134 KKRTKKKEKNKNKSRKEEEEE----------------EKKKKKKKKKKKRTKKKEEEKRK 177
K +N ++E+ EK K ++ K K ++ R
Sbjct: 494 DYTPKSIRNRRNGYLLKDEDRYYYDRGHRNLGAEKDPEKPHPDKDEEYPEDKDKSDDDRL 553
Query: 178 N--EKAVRLTKLSAFG 191
N +KA+R + FG
Sbjct: 554 NDADKAMRKLEADGFG 569
>gnl|CDD|149343 pfam08229, SHR3_chaperone, ER membrane protein SH3. This family of
proteins are membrane localised chaperones that are
required for correct plasma membrane localisation of
amino acid permeases (AAPs). SH3 prevents AAPs proteins
from aggregating and assists in their correct folding.
In the absence of SH3, AAPs are retained in the ER.
Length = 196
Score = 32.3 bits (74), Expect = 0.27
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 130 EEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKK 165
+ K + +E + KEEE E +KK+ KKKK
Sbjct: 161 DAKLLEEFAAEEAEAAAAAKEEESAEGEKKESKKKK 196
Score = 31.1 bits (71), Expect = 0.71
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 7/45 (15%)
Query: 119 RKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKK 163
K+ + ++ A E+ + KE+ E E EKK+ KKKK
Sbjct: 159 WKDAKLLEEFAAEEAEAAAAAKEE-------ESAEGEKKESKKKK 196
Score = 31.1 bits (71), Expect = 0.76
Identities = 9/37 (24%), Positives = 21/37 (56%)
Query: 99 KEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKK 135
K+A+ ++ + + +++EE + ++ E KKKK
Sbjct: 160 KDAKLLEEFAAEEAEAAAAAKEEESAEGEKKESKKKK 196
Score = 31.1 bits (71), Expect = 0.78
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 128 EAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKK 166
E ++ K E+ + + +EEE + +KK+ KKKK
Sbjct: 158 EWKDAKLLEEFAAEEAEAAAAAKEEESAEGEKKESKKKK 196
Score = 30.4 bits (69), Expect = 1.3
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 112 EKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNK 146
K + EE E A+E++ +KKE K K
Sbjct: 162 AKLLEEFAAEEAEAAAAAKEEESAEGEKKESKKKK 196
Score = 30.0 bits (68), Expect = 1.8
Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 144 KNKSRKEE--EEEEKKKKKKKKKKKRTKKKEEEKRK 177
K+ EE EE + K+++ +K+E K+K
Sbjct: 160 KDAKLLEEFAAEEAEAAAAAKEEESAEGEKKESKKK 195
Score = 29.6 bits (67), Expect = 2.1
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 93 RKEEKKKE---AEEEKKKTKNKEKNKNKSRKEEEEKKK 127
K+ K E AEE + KE+ + K+E +KKK
Sbjct: 159 WKDAKLLEEFAAEEAEAAAAAKEEESAEGEKKESKKKK 196
Score = 29.6 bits (67), Expect = 2.4
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 151 EEEEEKKKKKKKKKKKRTKKKEEEKRK 177
EE E K+++ +KKE +K+K
Sbjct: 170 AEEAEAAAAAKEEESAEGEKKESKKKK 196
Score = 29.6 bits (67), Expect = 2.4
Identities = 8/41 (19%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 69 NRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTK 109
K+ K ++ ++ + +++EE + ++E KK K
Sbjct: 158 EWKDAKLLEEFA--AEEAEAAAAAKEEESAEGEKKESKKKK 196
Score = 29.2 bits (66), Expect = 3.0
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 41 KNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKK 77
K+ K + EE + K+E++ +KE KKKK
Sbjct: 160 KDAKLLEEFAAEEAEAAAAAKEEESAEGEKKESKKKK 196
Score = 28.8 bits (65), Expect = 4.0
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 6 EEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKK 44
E K K +E + KEEE + KK+ K KK
Sbjct: 158 EWKDAKLLEEFAAEEAEAAAAAKEEESAEGEKKESKKKK 196
Score = 27.7 bits (62), Expect = 9.0
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 29 EEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNK 66
E ++ K ++ + + KEEE + KK+ K K
Sbjct: 158 EWKDAKLLEEFAAEEAEAAAAAKEEESAEGEKKESKKK 195
>gnl|CDD|220838 pfam10659, Trypan_glycop_C, Trypanosome variant surface
glycoprotein C-terminal domain. The trypanosome
parasite expresses these proteins to evade the immune
response.
Length = 98
Score = 30.9 bits (70), Expect = 0.27
Identities = 18/75 (24%), Positives = 30/75 (40%)
Query: 104 EKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKK 163
KK E + + +++E + + K+ K K + E E+ K KK KK
Sbjct: 2 NKKNKTKTECKEKGCKWDKKEDDGKCKPKEGKAKKNGAPVTQTAGTETTTEKCKGKKDKK 61
Query: 164 KKKRTKKKEEEKRKN 178
K+ K E K+
Sbjct: 62 DCKKGCKWEGNTCKD 76
Score = 29.3 bits (66), Expect = 1.1
Identities = 19/74 (25%), Positives = 32/74 (43%)
Query: 83 KKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEK 142
KK K K + +++ K + +E+ K K KE K+ + +K + KK +K
Sbjct: 2 NKKNKTKTECKEKGCKWDKKEDDGKCKPKEGKAKKNGAPVTQTAGTETTTEKCKGKKDKK 61
Query: 143 NKNKSRKEEEEEEK 156
+ K K E K
Sbjct: 62 DCKKGCKWEGNTCK 75
Score = 27.0 bits (60), Expect = 7.1
Identities = 19/74 (25%), Positives = 29/74 (39%)
Query: 54 EKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEK 113
KK +TK + K K +++ K + + K K + E EK K K +K
Sbjct: 2 NKKNKTKTECKEKGCKWDKKEDDGKCKPKEGKAKKNGAPVTQTAGTETTTEKCKGKKDKK 61
Query: 114 NKNKSRKEEEEKKK 127
+ K K E K
Sbjct: 62 DCKKGCKWEGNTCK 75
>gnl|CDD|217838 pfam04004, Leo1, Leo1-like protein. Members of this family are
part of the Paf1/RNA polymerase II complex. The Paf1
complex probably functions during the elongation phase
of transcription. The Leo1 subunit of the yeast
Paf1-complex binds RNA and contributes to complex
recruitment. The subunit acts by co-ordinating
co-transcriptional chromain modifications and helping
recruitment of mRNA 3prime-end processing factors.
Length = 312
Score = 32.9 bits (75), Expect = 0.27
Identities = 20/96 (20%), Positives = 38/96 (39%), Gaps = 2/96 (2%)
Query: 68 KNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTK--NKEKNKNKSRKEEEEK 125
+N ++K + K+ ++E +KKE ++ + + + N+EK KNK
Sbjct: 214 RNLATRQRKSGGVKITIVGKDPEHEKREREKKEEQKLRARRRRQNREKMKNKPPNRPGHG 273
Query: 126 KKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKK 161
K T E S E + ++ KK+
Sbjct: 274 SGSDSNVAKAATTYSEDEDEGSDCETRKAKEVKKEG 309
Score = 30.6 bits (69), Expect = 1.4
Identities = 16/69 (23%), Positives = 28/69 (40%)
Query: 4 KKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKE 63
KKEE+K + +RR + +EK KNK + ++E T+K +
Sbjct: 244 KKEEQKLRARRRRQNREKMKNKPPNRPGHGSGSDSNVAKAATTYSEDEDEGSDCETRKAK 303
Query: 64 KNKNKNRKE 72
+ K +
Sbjct: 304 EVKKEGAGR 312
>gnl|CDD|235505 PRK05563, PRK05563, DNA polymerase III subunits gamma and tau;
Validated.
Length = 559
Score = 32.9 bits (76), Expect = 0.29
Identities = 36/163 (22%), Positives = 63/163 (38%), Gaps = 14/163 (8%)
Query: 17 KKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKK 76
K+ + E++E+K+ KKK K KK K K + K +++ KN E +
Sbjct: 386 KQLKAQPVGVAPEQKEKKKEKKKNKKKKYKVPRGKIYKVLKEATRQDLELLKNVWGEILE 445
Query: 77 KKKRRTKKKEKNKNKSRKEEKKKEA-----EEE---KKKTKNKEKNKN------KSRKEE 122
K + K S ++ E E +K +KE N K +
Sbjct: 446 SLKAQRKSLRALLVNSEPVAASEDTVVLAFEYEIHFEKAMLDKELNDTIENILSKLLGKS 505
Query: 123 EEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKK 165
E E++ +K ++ + +EEEEEE+ + K+
Sbjct: 506 VEIVAVPEDEWQKIREEFLQKHKNEEEEEEEEEELPLIPEAKE 548
>gnl|CDD|187751 cd09270, RNase_H2-B, Ribonuclease H2-B is a subunit of the
eukaryotic RNase H complex which cleaves RNA-DNA
hybrids. Ribonuclease H2B is one of the three proteins
of eukaryotic RNase H2 complex that is required for
nucleic acid binding and hydrolysis. RNase H is
classified into two families, type I (prokaryotic RNase
HI, eukaryotic RNase H1 and viral RNase H) and type II
(prokaryotic RNase HII and HIII, and eukaryotic RNase
H2/HII). RNase H endonucleolytically hydrolyzes an RNA
strand when it is annealed to a complementary DNA strand
in the presence of divalent cations, in DNA replication
and repair. The enzyme can be found in bacteria,
archaea, and eukaryotes. Most prokaryotic and eukaryotic
genomes contain multiple RNase H genes. Despite a lack
of evidence for homology from sequence comparisons, type
I and type II RNase H share a common fold and similar
steric configurations of the four acidic active-site
residues, suggesting identical or very similar catalytic
mechanisms. Eukaryotic RNase HII is active during
replication and is believed to play a role in removal of
Okazaki fragment primers and single ribonucleotides in
DNA-DNA duplexes. Eukaryotic RNase HII is functional
when it forms a complex with RNase H2B and RNase H2C
proteins. It is speculated that the two accessory
subunits are required for correct folding of the
catalytic subunit of RNase HII. Mutations in the three
subunits of human RNase HII cause neurological disorder.
Length = 211
Score = 32.3 bits (74), Expect = 0.29
Identities = 22/53 (41%), Positives = 29/53 (54%)
Query: 125 KKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRK 177
KK E +KK+ K+ E ++K + EEEKKKKKKK KK+ KK
Sbjct: 151 KKVERLKKKELDIKEAEAARDKKKSNNAEEEKKKKKKKSAKKKKLKKVAAVGM 203
Score = 30.0 bits (68), Expect = 1.9
Identities = 12/49 (24%), Positives = 26/49 (53%)
Query: 117 KSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKK 165
K ++ + ++ + A +KKK ++EK K K + ++++ KK K
Sbjct: 157 KKKELDIKEAEAARDKKKSNNAEEEKKKKKKKSAKKKKLKKVAAVGMKA 205
Score = 29.2 bits (66), Expect = 3.0
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 8/64 (12%)
Query: 76 KKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKK 135
KK R KKKE + K+ EA +KKK+ N E+ K K +K + KKK+ ++
Sbjct: 150 LKKVERLKKKELD-------IKEAEAARDKKKSNNAEEEKKKKKK-KSAKKKKLKKVAAV 201
Query: 136 RTKK 139
K
Sbjct: 202 GMKA 205
Score = 28.8 bits (65), Expect = 4.6
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 10 KKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKK 61
KK R KKKE + ++ +++K +E+ KK K KS K+++ KK
Sbjct: 150 LKKVERLKKKELDIKEAEAARDKKKSNNAEEEKKKKKKKSAKKKKLKKVAAV 201
Score = 28.4 bits (64), Expect = 5.1
Identities = 16/52 (30%), Positives = 28/52 (53%)
Query: 34 KRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKK 85
+R KKKE + K +R +++ ++K+K K K+ K++K KK K
Sbjct: 154 ERLKKKELDIKEAEAARDKKKSNNAEEEKKKKKKKSAKKKKLKKVAAVGMKA 205
>gnl|CDD|215412 PLN02769, PLN02769, Probable galacturonosyltransferase.
Length = 629
Score = 33.1 bits (76), Expect = 0.30
Identities = 19/100 (19%), Positives = 30/100 (30%)
Query: 31 EEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKN 90
+ K +N+ +E K+ K + K KK K
Sbjct: 64 HVGSARENGTKKTQNQVSEGVDEILKESGLTSSKPSDIVISSRSKLKKVFPDPKLNPLPV 123
Query: 91 KSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAE 130
K + K +KE K+ ++E EK E E
Sbjct: 124 KPHSVPVPSSDTKNKSTAIDKENKGQKADEDENEKSCELE 163
>gnl|CDD|222571 pfam14153, Spore_coat_CotO, Spore coat protein CotO. Bacillus
spores are protected by a protein shell consisting of
over 50 different polypeptides, known as the coat. This
family of proteins has an important morphogenetic role
in coat assembly, it is involved in the assembly of at
least 5 different coat proteins including CotB, CotG,
CotS, CotSA and CotW. It is likely to act at a late
stage of coat assembly.
Length = 185
Score = 32.1 bits (73), Expect = 0.31
Identities = 21/81 (25%), Positives = 48/81 (59%)
Query: 92 SRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEE 151
+K ++K+E +E + ++ + K EE EK+KEA E +++ ++++ + +++EE
Sbjct: 33 IKKADEKEEEKENSDEHVKSKEEEQKIEYEEAEKEKEAGEPEREDIAEQQEKEEIAQEEE 92
Query: 152 EEEEKKKKKKKKKKKRTKKKE 172
+EEE + K+++ +KK
Sbjct: 93 KEEEAEDVKQQEVFSFKRKKP 113
Score = 31.3 bits (71), Expect = 0.54
Identities = 21/90 (23%), Positives = 45/90 (50%)
Query: 43 KKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAE 102
K ++ +E+E K ++ + K EE +K+K+ ++E + KEE +E E
Sbjct: 33 IKKADEKEEEKENSDEHVKSKEEEQKIEYEEAEKEKEAGEPEREDIAEQQEKEEIAQEEE 92
Query: 103 EEKKKTKNKEKNKNKSRKEEEEKKKEAEEK 132
+E++ K++ ++++ K+ EEK
Sbjct: 93 KEEEAEDVKQQEVFSFKRKKPFKEMNLEEK 122
Score = 30.6 bits (69), Expect = 0.93
Identities = 26/93 (27%), Positives = 51/93 (54%), Gaps = 3/93 (3%)
Query: 64 KNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEE 123
K ++EEK+ + K+E+ K + + EK+KEA E +++ +++ K + +EEE
Sbjct: 33 IKKADEKEEEKENSDEHVKSKEEEQKIEYEEAEKEKEAGEPEREDIAEQQEKEEIAQEEE 92
Query: 124 EKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEK 156
++++ + K+++ K K K KE EEK
Sbjct: 93 KEEEAEDVKQQEVFSFKRK---KPFKEMNLEEK 122
Score = 29.0 bits (65), Expect = 3.2
Identities = 25/100 (25%), Positives = 53/100 (53%)
Query: 91 KSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKE 150
+ +EK++E E + K+KE+ + +E E++K+ E +++ +++EK + +E
Sbjct: 33 IKKADEKEEEKENSDEHVKSKEEEQKIEYEEAEKEKEAGEPEREDIAEQQEKEEIAQEEE 92
Query: 151 EEEEEKKKKKKKKKKKRTKKKEEEKRKNEKAVRLTKLSAF 190
+EEE + K+++ + KK +E EK L L +
Sbjct: 93 KEEEAEDVKQQEVFSFKRKKPFKEMNLEEKIDFLAHLPHY 132
Score = 28.6 bits (64), Expect = 4.4
Identities = 17/79 (21%), Positives = 39/79 (49%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKK 61
K ++E++K+ K ++ + K EE E+++ + + + + KEE ++ K+
Sbjct: 35 KADEKEEEKENSDEHVKSKEEEQKIEYEEAEKEKEAGEPEREDIAEQQEKEEIAQEEEKE 94
Query: 62 KEKNKNKNRKEEKKKKKKR 80
+E K ++ K+KK
Sbjct: 95 EEAEDVKQQEVFSFKRKKP 113
>gnl|CDD|224337 COG1419, FlhF, Flagellar GTP-binding protein [Cell motility and
secretion].
Length = 407
Score = 32.7 bits (75), Expect = 0.31
Identities = 20/102 (19%), Positives = 45/102 (44%), Gaps = 4/102 (3%)
Query: 45 NKNKSRKEEEKKKRTKKKEKNKNKNRK----EEKKKKKKRRTKKKEKNKNKSRKEEKKKE 100
K + E +K +T++ K K+ + +KK+++R+ KK + S E K +E
Sbjct: 52 TKLAAVDSELRKFQTREAAKVKDAEAQLLKDPAEKKREERKAAKKIERSTPSLIERKTQE 111
Query: 101 AEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEK 142
++ ++ +++ +E EE E K+ + +
Sbjct: 112 VKDSGEEIAEMMRDEKVPIRELEEIPPEFVALYKQEIQSPTR 153
Score = 31.5 bits (72), Expect = 0.81
Identities = 18/86 (20%), Positives = 38/86 (44%), Gaps = 4/86 (4%)
Query: 101 AEEEKKKTKNKEKNKNKSRKEEEEKK-KEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKK 159
+ E +K + +E K K + + K E + +++K KK E++ + + +E K
Sbjct: 57 VDSELRKFQTREAAKVKDAEAQLLKDPAEKKREERKAAKKIERSTPSLIERKTQEVKDSG 116
Query: 160 KKKKKKKRTKKK---EEEKRKNEKAV 182
++ + R +K E E+ E
Sbjct: 117 EEIAEMMRDEKVPIRELEEIPPEFVA 142
Score = 31.2 bits (71), Expect = 1.1
Identities = 21/152 (13%), Positives = 48/152 (31%), Gaps = 8/152 (5%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEE--EEEKRTKKKEKNKKNKNKSRKEEEKKKRT 59
++ + + ++ + K E K E+ EE K KK E S E + ++
Sbjct: 58 DSELRKFQTREAAKVKDAEAQLLKDPAEKKREERKAAKKIE----RSTPSLIERKTQEVK 113
Query: 60 KKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEK--KKTKNKEKNKNK 117
E+ R E+ ++ + K + + + + E K
Sbjct: 114 DSGEEIAEMMRDEKVPIRELEEIPPEFVALYKQEIQSPTRLNLINELLRAGLELEILDMK 173
Query: 118 SRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRK 149
E+ + + +K + + + R
Sbjct: 174 DESYEDLRYFSEKLRKLLLSLIENLIVEQKRV 205
Score = 30.4 bits (69), Expect = 1.6
Identities = 16/95 (16%), Positives = 32/95 (33%), Gaps = 4/95 (4%)
Query: 85 KEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEK----KKKRTKKK 140
K + + + K EA+ K + K + + ++K E E K K +
Sbjct: 61 LRKFQTREAAKVKDAEAQLLKDPAEKKREERKAAKKIERSTPSLIERKTQEVKDSGEEIA 120
Query: 141 EKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEK 175
E +++ E EE + K+ +
Sbjct: 121 EMMRDEKVPIRELEEIPPEFVALYKQEIQSPTRLN 155
Score = 29.6 bits (67), Expect = 3.0
Identities = 26/174 (14%), Positives = 51/174 (29%), Gaps = 5/174 (2%)
Query: 14 RRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEE 73
RR KK K E + + + + K + + K R+E
Sbjct: 32 RRIKKGGFLGLLFSKTAVEVTKLAAVDSELRKFQTREAAKVKDAEAQLLKDPAEKKREER 91
Query: 74 KKKKKKRRTKKKEKNK-----NKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKE 128
K KK R+ + S +E + +E+ + +E ++E +
Sbjct: 92 KAAKKIERSTPSLIERKTQEVKDSGEEIAEMMRDEKVPIRELEEIPPEFVALYKQEIQSP 151
Query: 129 AEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKAV 182
+ ++E E + +K +K E +K V
Sbjct: 152 TRLNLINELLRAGLELEILDMKDESYEDLRYFSEKLRKLLLSLIENLIVEQKRV 205
>gnl|CDD|215584 PLN03113, PLN03113, DNA ligase 1; Provisional.
Length = 744
Score = 33.0 bits (75), Expect = 0.31
Identities = 24/116 (20%), Positives = 46/116 (39%), Gaps = 3/116 (2%)
Query: 4 KKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKE 63
KKK+ + + + K RK E + K + ++ + K K
Sbjct: 13 SNARAAAKKKQPQTQSQSSSPKKRKIGETQDANLGKTNVSEGTLPKTEDTIEPKSDSAKP 72
Query: 64 KNKNKNRKEEKK--KKKKRRTKKKEKNKNKSR-KEEKKKEAEEEKKKTKNKEKNKN 116
++ + E+ K KK + K +K++ KS+ KKK + + +K EK +
Sbjct: 73 RSSTSSIAEDSKTGTKKAQTLSKPKKDEMKSKIGLLKKKPNDFDPEKVAYWEKGER 128
>gnl|CDD|224114 COG1193, COG1193, Mismatch repair ATPase (MutS family) [DNA
replication, recombination, and repair].
Length = 753
Score = 33.1 bits (76), Expect = 0.32
Identities = 31/170 (18%), Positives = 56/170 (32%), Gaps = 14/170 (8%)
Query: 28 KEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEK 87
K E E++ +E +K + ++ EE+ + +K K K +
Sbjct: 496 KTEFGEEKELLEELIEKLEEVRKELEEELEEVEKLLDEVELLTGANSGGKTSLLELKAQI 555
Query: 88 NKNKSRK-----EEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKK-KE 141
EE K EA +E K K K+ + E K K+ + + + +K K
Sbjct: 556 VVLAHMGLPVPAEEAKVEAVDEVKFLKKKKGILDAGAFESTLKDKKNKVLPEAKKRKLKL 615
Query: 142 KNKNKSRKEEEEEEKKKKKKKKK--------KKRTKKKEEEKRKNEKAVR 183
++ + E K + K + E K E V+
Sbjct: 616 GDEVEVITGEPGAVVKIIAGILEALVQSGILKVIVSHLDLEIIKEEPKVK 665
Score = 32.7 bits (75), Expect = 0.35
Identities = 22/105 (20%), Positives = 36/105 (34%), Gaps = 2/105 (1%)
Query: 84 KKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKN 143
K+ + + EE +KE EEE ++ + K E K +
Sbjct: 503 KELLEELIEKLEEVRKELEEELEEVEKLLDEVELLTGANSGGKTSLLELKAQIVVLAHMG 562
Query: 144 KNKSRKEEEEEEKKKKKKKKKKKRTKKKE--EEKRKNEKAVRLTK 186
+E + E + K KKKK E K++K L +
Sbjct: 563 LPVPAEEAKVEAVDEVKFLKKKKGILDAGAFESTLKDKKNKVLPE 607
>gnl|CDD|227458 COG5129, MAK16, Nuclear protein with HMG-like acidic region
[General function prediction only].
Length = 303
Score = 32.7 bits (74), Expect = 0.32
Identities = 39/177 (22%), Positives = 77/177 (43%), Gaps = 1/177 (0%)
Query: 5 KEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEK 64
+E + R+ K + K + RK K K EK + KS + ++
Sbjct: 127 FKEHGEYMVRKPKMNRREKLRERKALNAAKFEKNIEKELMLRLKSGIYGDTPLNVREHLW 186
Query: 65 NKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEE 124
NK +E+++ +K+R +++E++ + E E+ KKK K ++ E E
Sbjct: 187 NKAATEREKRQDEKERYVEEEEESDTELEAVTDDSEKEKTKKKDLEKWLGSDQ-SMETSE 245
Query: 125 KKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKA 181
++E + + + E NK K RK + ++ KK +K + +++E EK +
Sbjct: 246 SEEEESSESESDEDEDEDNKGKIRKRKTDDAKKSRKPHIHIEYEQERENEKIPAVQH 302
>gnl|CDD|227448 COG5118, BDP1, Transcription initiation factor TFIIIB, Bdp1 subunit
[Transcription].
Length = 507
Score = 32.8 bits (74), Expect = 0.32
Identities = 28/172 (16%), Positives = 55/172 (31%), Gaps = 6/172 (3%)
Query: 3 NKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKK 62
N K K+ R K K ++ + SR+ +E + K
Sbjct: 146 NDMNLKTFKRHRVLGKPSSAKKPAKISPPTAMTDSLDRNFSSETSTSREADENENYVISK 205
Query: 63 EKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEE 122
K+ K ++ + K +N + E K + + K K K++ E+
Sbjct: 206 VKDIPKKVRDGE------SAKYFIDEENFTMAELCKPNFPIQISENFEKSKMAKKAKLEK 259
Query: 123 EEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEE 174
K E + K+ + ++ +KKK + + + EE
Sbjct: 260 RRHVKFLEGSNTHEMDQLLKHFLDNSNFRQDRRSRKKKASASRDISDQNAEE 311
>gnl|CDD|220102 pfam09073, BUD22, BUD22. BUD22 has been shown in yeast to be a
nuclear protein involved in bud-site selection. It plays
a role in positioning the proximal bud pole signal. More
recently it has been shown to be involved in ribosome
biogenesis.
Length = 424
Score = 32.9 bits (75), Expect = 0.32
Identities = 35/187 (18%), Positives = 71/187 (37%), Gaps = 23/187 (12%)
Query: 3 NKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNK-------------- 48
N E+ + + + + EE +KK ++ K +
Sbjct: 227 NYNEDTSESESDESDSEISESRSVSDSEESSPPSKKPKEKKTSSTFLPSLMGGYFSGSED 286
Query: 49 ---SRKEEEKKKRTKKKEKNKNKNRKE------EKKKKKKRRTKKKEKNKNKSRKEEKKK 99
++ + + KK K KN+ + EKK + KKE+ K + +E ++
Sbjct: 287 EDDDDEDIDPDQVVKKPVKRKNRRGQRARQAIWEKKYGSGAKHVKKEREKEQKEREGRQS 346
Query: 100 EAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKK 159
E E + K + + ++ + + ++ ++ K+ KKK K + + E KKK
Sbjct: 347 EWEARQAKREGGDAKAGRAAEPTGSRTQQKGDRPKRGEKKKPKKPSVDKPLHPSWEAKKK 406
Query: 160 KKKKKKK 166
K+KK
Sbjct: 407 AKEKKAN 413
Score = 29.4 bits (66), Expect = 3.3
Identities = 35/193 (18%), Positives = 81/193 (41%), Gaps = 17/193 (8%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKK 61
K KK+ KK KKK + +K+ + + E+E K + E + ++ + + E +
Sbjct: 150 KAKKKTKKSKKKEAKESSDKDDEEESESEDESKSEESAEDDSDDEEEEDSDSEDYSQYDG 209
Query: 62 -------KEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKN 114
+E+ + + + + + + ++SR +E+ KK K K+ +
Sbjct: 210 MLVDSSDEEEGEEAPSINYNEDTSESESDESDSEISESRSVSDSEESSPPSKKPKEKKTS 269
Query: 115 KNK----------SRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKK 164
++E++ ++ + + + K KN+ R + EKK K
Sbjct: 270 STFLPSLMGGYFSGSEDEDDDDEDIDPDQVVKKPVKRKNRRGQRARQAIWEKKYGSGAKH 329
Query: 165 KKRTKKKEEEKRK 177
K+ ++KE+++R+
Sbjct: 330 VKKEREKEQKERE 342
Score = 28.3 bits (63), Expect = 8.6
Identities = 34/190 (17%), Positives = 64/190 (33%), Gaps = 31/190 (16%)
Query: 14 RRTKKKEKNKNKSRKEEEEEKRTKKKEKNKK----NKNKSRKEEEKKKRTKKKEKNKNKN 69
R+ + +K + E E K N N + E K
Sbjct: 86 RQIINDKSHKANPSRSEAEVVEKLKSLNNVVSRLLNSKPVKNVLESIMEGLDKILGIETK 145
Query: 70 RKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEE----- 124
K+ K KKK +++KKKE ++ + +E++ E+E+E K ++ E + + +E+ +
Sbjct: 146 AKKGKAKKKTKKSKKKEAKESSDKDDEEESESEDESKSEESAEDDSDDEEEEDSDSEDYS 205
Query: 125 ----------------------KKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKK 162
++ E + + + EE KK K+
Sbjct: 206 QYDGMLVDSSDEEEGEEAPSINYNEDTSESESDESDSEISESRSVSDSEESSPPSKKPKE 265
Query: 163 KKKKRTKKKE 172
KK T
Sbjct: 266 KKTSSTFLPS 275
>gnl|CDD|153340 cd07656, F-BAR_srGAP, The F-BAR (FES-CIP4 Homology and
Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase
Activating Proteins. F-BAR domains are dimerization
modules that bind and bend membranes and are found in
proteins involved in membrane dynamics and actin
reorganization. Slit-Robo GTPase Activating Proteins
(srGAPs) are Rho GAPs that interact with Robo1, the
transmembrane receptor of Slit proteins. Slit proteins
are secreted proteins that control axon guidance and the
migration of neurons and leukocytes. Vertebrates contain
three isoforms of srGAPs, all of which are expressed
during embryonic and early development in the nervous
system but with different localization and timing.
srGAPs contain an N-terminal F-BAR domain, a Rho GAP
domain, and a C-terminal SH3 domain. F-BAR domains form
banana-shaped dimers with a positively-charged concave
surface that binds to negatively-charged lipid
membranes. They can induce membrane deformation in the
form of long tubules.
Length = 241
Score = 32.3 bits (74), Expect = 0.33
Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 7/62 (11%)
Query: 120 KEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNE 179
K E K KEAE++++K+ + EK +SR KK +K+ +KR K E K K
Sbjct: 148 KSAERKLKEAEKQEEKQEQSPEKKLERSRS-------SKKIEKEVEKRQAKYSEAKLKCT 200
Query: 180 KA 181
KA
Sbjct: 201 KA 202
>gnl|CDD|218941 pfam06217, GAGA_bind, GAGA binding protein-like family. This
family includes gbp a protein from Soybean that binds to
GAGA element dinucleotide repeat DNA. It seems likely
that the this domain mediates DNA binding. This putative
domain contains several conserved cysteines and a
histidine suggesting this may be a zinc-binding DNA
interaction domain.
Length = 301
Score = 32.5 bits (74), Expect = 0.34
Identities = 9/48 (18%), Positives = 19/48 (39%)
Query: 59 TKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKK 106
+ K+ K ++ K K K K+ KK + + ++ + K
Sbjct: 145 KEVKKPKKGQSPKVPKAPKPKKPKKKGSVSNRSVKMPGIDPRSKPDWK 192
Score = 30.2 bits (68), Expect = 2.0
Identities = 12/55 (21%), Positives = 22/55 (40%)
Query: 30 EEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKK 84
K+ +K KK ++ + K K+ KKK N++ K + + K
Sbjct: 138 STAPPEAKEVKKPKKGQSPKVPKAPKPKKPKKKGSVSNRSVKMPGIDPRSKPDWK 192
Score = 29.1 bits (65), Expect = 3.8
Identities = 13/57 (22%), Positives = 21/57 (36%), Gaps = 1/57 (1%)
Query: 67 NKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEE 123
+E KK KK ++ K K K +K +KK K + K ++
Sbjct: 140 APPEAKEVKKPKKGQSPKVPK-APKPKKPKKKGSVSNRSVKMPGIDPRSKPDWKSQD 195
Score = 29.1 bits (65), Expect = 4.1
Identities = 11/46 (23%), Positives = 19/46 (41%)
Query: 54 EKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKK 99
E K+ K K+ K K K KK K++ ++ + + K
Sbjct: 143 EAKEVKKPKKGQSPKVPKAPKPKKPKKKGSVSNRSVKMPGIDPRSK 188
Score = 28.7 bits (64), Expect = 5.6
Identities = 11/67 (16%), Positives = 20/67 (29%), Gaps = 2/67 (2%)
Query: 95 EEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEE 154
E E ++ K + + + K + KK K KK + + +
Sbjct: 128 EMHHLEVPPISTAPPEAKEVKKPKKGQSPKVPKAPKPKKPK--KKGSVSNRSVKMPGIDP 185
Query: 155 EKKKKKK 161
K K
Sbjct: 186 RSKPDWK 192
Score = 28.7 bits (64), Expect = 5.6
Identities = 13/74 (17%), Positives = 22/74 (29%)
Query: 110 NKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTK 169
N +R+ + + + K+ K +S K + + KK KKK
Sbjct: 118 QLGDNPYGTREMHHLEVPPISTAPPEAKEVKKPKKGQSPKVPKAPKPKKPKKKGSVSNRS 177
Query: 170 KKEEEKRKNEKAVR 183
K K
Sbjct: 178 VKMPGIDPRSKPDW 191
Score = 28.3 bits (63), Expect = 6.4
Identities = 7/55 (12%), Positives = 17/55 (30%)
Query: 31 EEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKK 85
K+ K K + + K + KK+ + + + + + K
Sbjct: 138 STAPPEAKEVKKPKKGQSPKVPKAPKPKKPKKKGSVSNRSVKMPGIDPRSKPDWK 192
Score = 28.3 bits (63), Expect = 6.8
Identities = 15/65 (23%), Positives = 23/65 (35%), Gaps = 8/65 (12%)
Query: 3 NKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKK 62
KE KK KK + K + K K K KK + ++ + K K +
Sbjct: 143 EAKEVKKPKKGQSPKVPKAPKPKKPK--------KKGSVSNRSVKMPGIDPRSKPDWKSQ 194
Query: 63 EKNKN 67
+ N
Sbjct: 195 DLVIN 199
>gnl|CDD|217817 pfam03961, DUF342, Protein of unknown function (DUF342). This
family of bacterial proteins has no known function. The
proteins are in the region of 500-600 amino acid
residues in length.
Length = 450
Score = 32.6 bits (75), Expect = 0.34
Identities = 21/89 (23%), Positives = 40/89 (44%)
Query: 85 KEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNK 144
E + EE+ KE EEE +K K K K + + +K + +K TK+K +
Sbjct: 330 PELKEELKELEEELKELEEELEKIKKLLKKLPKKARGQLPPEKREQLEKLLETKEKLSEE 389
Query: 145 NKSRKEEEEEEKKKKKKKKKKKRTKKKEE 173
+ +EE +E K++ + + + +
Sbjct: 390 LEELEEELKELKEELESLYSEGKISVNKT 418
>gnl|CDD|219953 pfam08648, DUF1777, Protein of unknown function (DUF1777). This is
a family of eukaryotic proteins of unknown function.
Some of the proteins in this family are putative nucleic
acid binding proteins.
Length = 158
Score = 31.8 bits (72), Expect = 0.35
Identities = 15/104 (14%), Positives = 51/104 (49%)
Query: 5 KEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEK 64
+ ++ +++ R++ +++ + + + E+ +++ +++ R ++ R++ +
Sbjct: 7 RSPRRSRRRGRSRSRDRRERRRERSRSRERDRRRRSRSRSPHRSRRSRSPRRHRSRSRSP 66
Query: 65 NKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKT 108
++ ++RK E+ K + K++ + K E K + E E K
Sbjct: 67 SRRRDRKRERDKDAREPKKRERQKLIKEEDLEGKSDEEVEMMKM 110
Score = 29.8 bits (67), Expect = 1.6
Identities = 19/105 (18%), Positives = 60/105 (57%), Gaps = 2/105 (1%)
Query: 56 KKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNK 115
+ R+ ++ + + ++R +++++++ R++ +E+++ + + + + +++ +++
Sbjct: 5 RSRSPRRSRRRGRSRSRDRRERRRERSRSRERDRRRRSRSRSPHRSRRSRSPRRHRSRSR 64
Query: 116 NKSRKEE--EEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKK 158
+ SR+ + E+ K+A E KK+ +K K ++ K +EE E K
Sbjct: 65 SPSRRRDRKRERDKDAREPKKRERQKLIKEEDLEGKSDEEVEMMK 109
Score = 29.5 bits (66), Expect = 2.3
Identities = 17/102 (16%), Positives = 55/102 (53%), Gaps = 1/102 (0%)
Query: 23 KNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRT 82
+++SR +R + + ++++ + + R ++ R +++ ++++ +R + ++ R+
Sbjct: 3 RSRSRSPRRSRRRGRSRSRDRRERRRERSRSRERDR-RRRSRSRSPHRSRRSRSPRRHRS 61
Query: 83 KKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEE 124
+ + ++ + RK E+ K+A E KK+ + K + + +E
Sbjct: 62 RSRSPSRRRDRKRERDKDAREPKKRERQKLIKEEDLEGKSDE 103
Score = 28.7 bits (64), Expect = 3.5
Identities = 17/111 (15%), Positives = 58/111 (52%), Gaps = 1/111 (0%)
Query: 81 RTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKK 140
R++ +++ + R + + ++ + + +SR + + + ++ R++ +
Sbjct: 5 RSRSPRRSRRRGRSRSRDRRERRRERSRSRERDRRRRSRSRSPHRSRRSRSPRRHRSRSR 64
Query: 141 EKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKAVRLTKLSAFG 191
++ + RK E +++ ++ KK++++K K+++ E K+++ V + K+ F
Sbjct: 65 SPSRRRDRKRERDKDAREPKKRERQKLIKEEDLEG-KSDEEVEMMKMMGFS 114
>gnl|CDD|235370 PRK05244, PRK05244, Der GTPase activator; Provisional.
Length = 177
Score = 31.8 bits (73), Expect = 0.36
Identities = 41/118 (34%), Positives = 53/118 (44%), Gaps = 10/118 (8%)
Query: 74 KKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKK 133
KKKK + K K +EE EA E K+K K+K K+ SR E + K
Sbjct: 1 KKKKSSPKRSKGMAKSKKKTREELDAEARERKRKKKHK-GLKSGSRHNEGN-----TQSK 54
Query: 134 KKRTKKKEKNKNKSRK----EEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKAVRLTKL 187
K +K+ + S+K EE+ K KKKK K KK E+E K E RL L
Sbjct: 55 GKGQAQKKDPRIGSKKPIPLGVEEKVKPKKKKPKSKKPKLSPEQELEKLENDERLNAL 112
Score = 31.0 bits (71), Expect = 0.72
Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 7/92 (7%)
Query: 3 NKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKK 62
KK+ K+ K K K+K + + E E KR KK + K + + K + + +
Sbjct: 1 KKKKSSPKRSKGMAKSKKKTREELDAEARERKRKKKHKGLKSGSRHNEGNTQSKGKGQAQ 60
Query: 63 EKNKNKNRK-------EEKKKKKKRRTKKKEK 87
+K+ K EEK K KK++ K K+
Sbjct: 61 KKDPRIGSKKPIPLGVEEKVKPKKKKPKSKKP 92
>gnl|CDD|177779 PLN00185, PLN00185, 60S ribosomal protein L4-1; Provisional.
Length = 405
Score = 32.5 bits (74), Expect = 0.37
Identities = 24/105 (22%), Positives = 39/105 (37%), Gaps = 19/105 (18%)
Query: 96 EKKKEAEEEKKKTKNKEKNKNKSR----KEEEEKKKEAEEKKKKRTKKKEKNKNKS---- 147
EK E ++ + K N + +R E + ++ K+ KK KN +
Sbjct: 273 EKPSEKKKGYVLPRAKMVNADLARIINSDEVQSVVNPIKKDVKRAPLKKNPLKNLNAMLK 332
Query: 148 --------RKEE---EEEEKKKKKKKKKKKRTKKKEEEKRKNEKA 181
R+ E K KK+K KKR + +EE + A
Sbjct: 333 LNPYAKTARRMALLAEAARVKAKKEKLAKKRKQVSKEEAAAIKAA 377
Score = 29.4 bits (66), Expect = 4.1
Identities = 17/66 (25%), Positives = 30/66 (45%)
Query: 75 KKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKK 134
KK KR KK KN + + A+ ++ E + K++KE+ KK++ K++
Sbjct: 311 KKDVKRAPLKKNPLKNLNAMLKLNPYAKTARRMALLAEAARVKAKKEKLAKKRKQVSKEE 370
Query: 135 KRTKKK 140
K
Sbjct: 371 AAAIKA 376
>gnl|CDD|215239 PLN02436, PLN02436, cellulose synthase A.
Length = 1094
Score = 32.9 bits (75), Expect = 0.38
Identities = 26/76 (34%), Positives = 36/76 (47%), Gaps = 11/76 (14%)
Query: 60 KKKEKNKNKN----------RKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTK 109
KKK K N +KKKKKK + KKK+KN+ S K+ E EE +
Sbjct: 662 KKKPPGKTCNCWPKWCCLCCGSRKKKKKKKSKEKKKKKNREAS-KQIHALENIEEGIEGS 720
Query: 110 NKEKNKNKSRKEEEEK 125
N EK+ + + E+K
Sbjct: 721 NNEKSSETPQLKLEKK 736
Score = 28.7 bits (64), Expect = 8.0
Identities = 17/56 (30%), Positives = 30/56 (53%)
Query: 1 CKNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKK 56
C ++K++KKKK K + KKK + +K E + + N+K+ + + EKK
Sbjct: 681 CGSRKKKKKKKSKEKKKKKNREASKQIHALENIEEGIEGSNNEKSSETPQLKLEKK 736
>gnl|CDD|227512 COG5185, HEC1, Protein involved in chromosome segregation,
interacts with SMC proteins [Cell division and
chromosome partitioning].
Length = 622
Score = 32.6 bits (74), Expect = 0.40
Identities = 28/153 (18%), Positives = 58/153 (37%)
Query: 3 NKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKK 62
N + +++ K K + + +K + ++ K +K R K
Sbjct: 250 NYEPSEQELKLGFEKFVHIINTDIANLKTQNDNLYEKIQEAMKISQKIKTLREKWRALKS 309
Query: 63 EKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEE 122
+ NK +N K+K + K EK K++ +E++ +A + +K+ K E+
Sbjct: 310 DSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQ 369
Query: 123 EEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEE 155
E + EK + K +K K + +
Sbjct: 370 FELMNQEREKLTRELDKINIQSDKLTKSVKSRK 402
Score = 31.1 bits (70), Expect = 1.1
Identities = 35/184 (19%), Positives = 68/184 (36%)
Query: 30 EEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNK 89
+ E+ +++ K K K + + + +E K ++ +EK +
Sbjct: 246 KLEDNYEPSEQELKLGFEKFVHIINTDIANLKTQNDNLYEKIQEAMKISQKIKTLREKWR 305
Query: 90 NKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRK 149
K + K+ + K + K E E K+E + + + K K
Sbjct: 306 ALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGI 365
Query: 150 EEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKAVRLTKLSAFGISGYLLQWIRNFLSGWIQ 209
E+ E ++++K + K + K K+V+ KL A GI L + +R + S
Sbjct: 366 STEQFELMNQEREKLTRELDKINIQSDKLTKSVKSRKLEAQGIFKSLEKTLRQYDSLIQN 425
Query: 210 IVRV 213
I R
Sbjct: 426 ITRS 429
>gnl|CDD|218538 pfam05285, SDA1, SDA1. This family consists of several SDA1
protein homologues. SDA1 is a Saccharomyces cerevisiae
protein which is involved in the control of the actin
cytoskeleton. The protein is essential for cell
viability and is localised in the nucleus.
Length = 317
Score = 32.3 bits (74), Expect = 0.40
Identities = 20/101 (19%), Positives = 43/101 (42%), Gaps = 5/101 (4%)
Query: 95 EEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNK-----NKSRK 149
E ++E +E KK K + EEE ++E E +K++ + + + ++
Sbjct: 132 SEDEEEKDEAAKKAKEDSDEELSEEDEEEAAEEEEAEAEKEKASELATTRILTPADFAKI 191
Query: 150 EEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKAVRLTKLSAF 190
+E EK K K + + K+ +R +++ V +
Sbjct: 192 QELRLEKGVDKALGGKLKRRDKDAPERHSDELVDADDIEGP 232
Score = 31.5 bits (72), Expect = 0.79
Identities = 37/184 (20%), Positives = 75/184 (40%), Gaps = 27/184 (14%)
Query: 19 KEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEE----- 73
KE + S EEE+++ KK +++ + EEE + + + + + +
Sbjct: 125 KEIESSDSEDEEEKDEAAKKAKEDSDEELSEEDEEEAAEEEEAEAEKEKASELATTRILT 184
Query: 74 ----KKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEK-----NKNKSRKEE-- 122
K ++ R K +K K K E + + + K K KEE
Sbjct: 185 PADFAKIQELRLEKGVDKALGGKLKRRDKDAPERHSDELVDADDIEGPAKKKKQTKEERI 244
Query: 123 ---EEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNE 179
+E +++ E+ ++ KK ++ K+ + KE K +KK T K+ + K +
Sbjct: 245 ATAKEGREDREKFGSRKGKKDKEGKSTTNKE--------KARKKNFMMTLHKKRVRGKQK 296
Query: 180 KAVR 183
+++R
Sbjct: 297 RSLR 300
Score = 29.6 bits (67), Expect = 3.3
Identities = 36/184 (19%), Positives = 76/184 (41%), Gaps = 28/184 (15%)
Query: 4 KKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRK----EEEKKKRT 59
+++++ KK + +E ++ EE E+ + EK K ++ + + + K +
Sbjct: 136 EEKDEAAKKAKEDSDEELSEEDE--EEAAEEEEAEAEKEKASELATTRILTPADFAKIQE 193
Query: 60 KKKEKNKNKNRKEEKKKKKKRRTKKKEKN------------KNKSRKEEK------KKEA 101
+ EK +K + K++ K ++ K K KEE+ +E
Sbjct: 194 LRLEKGVDKALGGKLKRRDKDAPERHSDELVDADDIEGPAKKKKQTKEERIATAKEGRED 253
Query: 102 EEEKKKTKNKEKNKNKSRKEEEEKKKE----AEEKKKKRTKKKEKNKNKSRKEEEEEEKK 157
E+ K K+ + KS +E+ +K+ KK+ R K+K ++K + ++
Sbjct: 254 REKFGSRKGKKDKEGKSTTNKEKARKKNFMMTLHKKRVRGKQKRSLRDKQKVLRAHILRQ 313
Query: 158 KKKK 161
KK
Sbjct: 314 KKGG 317
>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A
(vWA) domain [General function prediction only].
Length = 4600
Score = 32.7 bits (74), Expect = 0.41
Identities = 28/182 (15%), Positives = 80/182 (43%), Gaps = 5/182 (2%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKK 61
K+ ++ + K++ NK K+ +E++ +++ + + + + ++ ++
Sbjct: 3922 KSNEQSAANNESDLVSKEDDNKALEDKDRQEKE-DEEEMSDDVGIDDEIQPDIQENNSQP 3980
Query: 62 KEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKE---EKKKEAEEEKKKTKNKEK-NKNK 117
+N++ + E+ K +K K+ + E E K+EA+ EK + E +
Sbjct: 3981 PPENEDLDLPEDLKLDEKEGDVSKDSDLEDMDMEAADENKEEADAEKDEPMQDEDPLEEN 4040
Query: 118 SRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRK 177
+ +E+ ++ + + + K E ++ +E EE + K ++ ++ + E++
Sbjct: 4041 NTLDEDIQQDDFSDLAEDDEKMNEDGFEENVQENEESTEDGVKSDEELEQGEVPEDQAID 4100
Query: 178 NE 179
N
Sbjct: 4101 NH 4102
Score = 30.7 bits (69), Expect = 1.6
Identities = 24/173 (13%), Positives = 75/173 (43%), Gaps = 4/173 (2%)
Query: 11 KKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNR 70
+ + E+ N+ E K++ NK ++K R+E+E ++ + +
Sbjct: 3911 PNEEDLLETEQKSNEQSAANNESDLVSKEDDNKALEDKDRQEKEDEE----EMSDDVGID 3966
Query: 71 KEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAE 130
E + ++ ++ +N++ E+ K + +E + ++ + +E +++ +AE
Sbjct: 3967 DEIQPDIQENNSQPPPENEDLDLPEDLKLDEKEGDVSKDSDLEDMDMEAADENKEEADAE 4026
Query: 131 EKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKAVR 183
+ + + + + N ++ ++++ + +K EE ++NE++
Sbjct: 4027 KDEPMQDEDPLEENNTLDEDIQQDDFSDLAEDDEKMNEDGFEENVQENEESTE 4079
Score = 29.6 bits (66), Expect = 3.7
Identities = 21/160 (13%), Positives = 61/160 (38%), Gaps = 4/160 (2%)
Query: 20 EKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKK 79
+N+N +EE ++ + + + N ++ + + + + K+ ++ +
Sbjct: 3874 SENENSDSEEENQDLDEEVNDIPEDLSNSLNEKLWDEPNEEDLLETEQKSNEQSAANNES 3933
Query: 80 RRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKK 139
K++ NK K+ ++KE EEE + + + ++ + +
Sbjct: 3934 DLVSKEDDNKALEDKDRQEKEDEEEMSDDVGIDDEI----QPDIQENNSQPPPENEDLDL 3989
Query: 140 KEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNE 179
E K ++ + ++ + + K+E + K+E
Sbjct: 3990 PEDLKLDEKEGDVSKDSDLEDMDMEAADENKEEADAEKDE 4029
>gnl|CDD|216292 pfam01086, Clathrin_lg_ch, Clathrin light chain.
Length = 225
Score = 32.0 bits (73), Expect = 0.42
Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 7/67 (10%)
Query: 53 EEKKKRTKKKEKNKNKNRKEEKKKKKK-------RRTKKKEKNKNKSRKEEKKKEAEEEK 105
E + R +++++ K ++E +K +K +KKEK K ++RKE ++ AE +
Sbjct: 119 ERRDLRIEERDEASEKKKEELIEKAQKEIDDFYENYNEKKEKTKAQNRKEAEQFLAERDD 178
Query: 106 KKTKNKE 112
+ E
Sbjct: 179 FSSPGTE 185
Score = 31.6 bits (72), Expect = 0.51
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 11/68 (16%)
Query: 86 EKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKN 145
K + + ++++ EKKK + EK +KE ++ + +KKEK K
Sbjct: 115 RKWRERRDLRIEERDEASEKKKEELIEK-----------AQKEIDDFYENYNEKKEKTKA 163
Query: 146 KSRKEEEE 153
++RKE E+
Sbjct: 164 QNRKEAEQ 171
Score = 29.7 bits (67), Expect = 2.1
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 10/81 (12%)
Query: 67 NKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKK----------TKNKEKNKN 116
++ EE + +K R ++ + + + EKKKE EK + + KEK K
Sbjct: 104 DRVEGEEPESIRKWRERRDLRIEERDEASEKKKEELIEKAQKEIDDFYENYNEKKEKTKA 163
Query: 117 KSRKEEEEKKKEAEEKKKKRT 137
++RKE E+ E ++ T
Sbjct: 164 QNRKEAEQFLAERDDFSSPGT 184
Score = 29.3 bits (66), Expect = 3.1
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 27 RKEEEEEKRTKKKEKNKKNKNKSRKEEEK--KKRTKKKEKNKNKNRKEEKKKKKKR 80
R EE+ ++K ++ K++KE + + +KKEK K +NRKE ++ +R
Sbjct: 121 RDLRIEERDEASEKKKEELIEKAQKEIDDFYENYNEKKEKTKAQNRKEAEQFLAER 176
>gnl|CDD|215656 pfam00012, HSP70, Hsp70 protein. Hsp70 chaperones help to fold
many proteins. Hsp70 assisted folding involves repeated
cycles of substrate binding and release. Hsp70 activity
is ATP dependent. Hsp70 proteins are made up of two
regions: the amino terminus is the ATPase domain and the
carboxyl terminus is the substrate binding region.
Length = 598
Score = 32.6 bits (75), Expect = 0.43
Identities = 18/85 (21%), Positives = 39/85 (45%)
Query: 99 KEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKK 158
K+ K++ + S E E K+AEE + K+KE+ + K+ EE +K
Sbjct: 483 KDKGTGKEQKITITASSGLSDDEIERMVKDAEEYAAEDKKRKERIEAKNEAEEYVYSLEK 542
Query: 159 KKKKKKKKRTKKKEEEKRKNEKAVR 183
K++ K + +++ + + ++
Sbjct: 543 SLKEEGDKLPEADKKKVEEAIEWLK 567
Score = 31.0 bits (71), Expect = 1.1
Identities = 18/77 (23%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
Query: 94 KEEKKKEAEEEKKKTKNKEKNK-------NKSRKEEEEKKKEAEEKKKKRTKKKEKNKNK 146
K+ ++ AE++K+K + + KN+ + +EE K +KKK + +
Sbjct: 511 KDAEEYAAEDKKRKERIEAKNEAEEYVYSLEKSLKEEGDKLPEADKKKVEEAIEWLKEEL 570
Query: 147 SRKEEEEEEKKKKKKKK 163
+++EE E K ++ +K
Sbjct: 571 EGEDKEEIEAKTEELQK 587
Score = 30.3 bits (69), Expect = 2.0
Identities = 23/100 (23%), Positives = 45/100 (45%), Gaps = 16/100 (16%)
Query: 29 EEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNK--------NKNRKEEKKKKKKR 80
++E E+ K E+ E+KK++ + + KN+ K+ KEE K +
Sbjct: 503 DDEIERMVKDAEEY--------AAEDKKRKERIEAKNEAEEYVYSLEKSLKEEGDKLPEA 554
Query: 81 RTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRK 120
KK E+ ++E + ++ EE + KT+ +K +
Sbjct: 555 DKKKVEEAIEWLKEELEGEDKEEIEAKTEELQKVVQPIGE 594
Score = 30.3 bits (69), Expect = 2.3
Identities = 24/107 (22%), Positives = 46/107 (42%), Gaps = 14/107 (13%)
Query: 86 EKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEE--------KKKKRT 137
+ S E ++ + E+ ++K+ RKE E K EAEE K++
Sbjct: 496 TASSGLSDDEIERMVKDAEEYAAEDKK------RKERIEAKNEAEEYVYSLEKSLKEEGD 549
Query: 138 KKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKAVRL 184
K E +K K + E +++ + + K++ K +E +K R+
Sbjct: 550 KLPEADKKKVEEAIEWLKEELEGEDKEEIEAKTEELQKVVQPIGERM 596
Score = 29.9 bits (68), Expect = 3.1
Identities = 27/117 (23%), Positives = 52/117 (44%), Gaps = 12/117 (10%)
Query: 30 EEEEKRTKKKEKN--KKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEK 87
++K T K++K + S E E+ K+ + E+KK R+ + + K
Sbjct: 481 SAKDKGTGKEQKITITASSGLSDDEIERM------VKDAEEYAAEDKK----RKERIEAK 530
Query: 88 NKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNK 144
N+ + +K +EE K +K K + E +++ E E+K++ K +E K
Sbjct: 531 NEAEEYVYSLEKSLKEEGDKLPEADKKKVEEAIEWLKEELEGEDKEEIEAKTEELQK 587
>gnl|CDD|240317 PTZ00217, PTZ00217, flap endonuclease-1; Provisional.
Length = 393
Score = 32.3 bits (74), Expect = 0.45
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 85 KEKNKNKSRKEEK-KKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKN 143
KEKN N+ R E+ ++ + + KKT+ + + + K+ +K + KKK+ K
Sbjct: 314 KEKNFNEERVEKYIERLKKAKTKKTQTRLDSFFTATKKPIKKSNSKAKLKKKKKKAGASA 373
Query: 144 KNKSRKEEEEEEKKKKKKKK 163
KS +E + KKK KK
Sbjct: 374 VPKSETSQEAKSSGKKKVKK 393
Score = 30.7 bits (70), Expect = 1.4
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
Query: 19 KEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKK 78
KEKN N+ R E+ E+ K K K K ++R + K +K+ +K + ++KKKK
Sbjct: 314 KEKNFNEERVEKYIERLKKAKTK----KTQTRLDSFFTATKKPIKKSNSKAKLKKKKKKA 369
Query: 79 KRRTKKKEKNKNKSRKEEKKK 99
K + +++ KKK
Sbjct: 370 GASAVPKSETSQEAKSSGKKK 390
Score = 29.6 bits (67), Expect = 3.6
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 11/83 (13%)
Query: 62 KEKNKNKNR--------KEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEK 113
KEKN N+ R K+ K KK + R +K KK ++ + KK K K
Sbjct: 314 KEKNFNEERVEKYIERLKKAKTKKTQTRLDSFFTAT---KKPIKKSNSKAKLKKKKKKAG 370
Query: 114 NKNKSRKEEEEKKKEAEEKKKKR 136
+ E ++ K + +KK K+
Sbjct: 371 ASAVPKSETSQEAKSSGKKKVKK 393
Score = 28.8 bits (65), Expect = 5.5
Identities = 28/88 (31%), Positives = 35/88 (39%), Gaps = 13/88 (14%)
Query: 102 EEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKE--------KNKNKSRKEEEE 153
EE KK KEKN N+ R E K E KK +TKK + K +K +
Sbjct: 305 EEGLKKFLVKEKNFNEERVE-----KYIERLKKAKTKKTQTRLDSFFTATKKPIKKSNSK 359
Query: 154 EEKKKKKKKKKKKRTKKKEEEKRKNEKA 181
+ KKKKKK K E +
Sbjct: 360 AKLKKKKKKAGASAVPKSETSQEAKSSG 387
>gnl|CDD|217023 pfam02414, Borrelia_orfA, Borrelia ORF-A. This protein is encoded
by an open reading frame in plasmid borne DNA repeats of
Borrelia species. This protein is known as ORF-A. The
function of this putative protein is unknown.
Length = 285
Score = 32.0 bits (73), Expect = 0.47
Identities = 53/185 (28%), Positives = 88/185 (47%), Gaps = 8/185 (4%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEE---EEKRTKKKEKNKKNKNKSRKEEEKKKR 58
K KK E+ KK+ KK+ NKN S ++ E + K+ +++K K+ K EK K
Sbjct: 101 KEKKIERFKKRVNAYFKKKSNKNGSVEKNECINNKNNVINKKIKEESKKKNSKNIEKLKI 160
Query: 59 TKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKS 118
K +K K ++ K K + K E+N K K+ + ++K KN N
Sbjct: 161 KKYFKKCNFKTNLKKDIKIKLLKIIKIEENFLI-----KNKKLKNKQKTLKNILYNLKDK 215
Query: 119 RKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKN 178
E++ KK+ EK ++ +K KNK E+ + + K K KK KKK++ +KN
Sbjct: 216 ELEKKGYKKKQIEKFFQKIYEKYKNKPHFIIEKNKYKDLNKIIGKFKKSFKKKKKNSKKN 275
Query: 179 EKAVR 183
+ ++
Sbjct: 276 YENIK 280
Score = 28.9 bits (65), Expect = 5.4
Identities = 44/184 (23%), Positives = 76/184 (41%), Gaps = 6/184 (3%)
Query: 3 NKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTK-- 60
NK ++KK ++ + + K KS K EK KN K ++E +KK
Sbjct: 97 NKYFKEKKIERFKKRVNAYFKKKSNKNGSVEKNECINNKNNVINKKIKEESKKKNSKNIE 156
Query: 61 ----KKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKN 116
KK K + KK K + K + +N K +K K ++ K K+K
Sbjct: 157 KLKIKKYFKKCNFKTNLKKDIKIKLLKIIKIEENFLIKNKKLKNKQKTLKNILYNLKDKE 216
Query: 117 KSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKR 176
+K ++K+ E +K K + + + + ++ K K KK K+ KK ++
Sbjct: 217 LEKKGYKKKQIEKFFQKIYEKYKNKPHFIIEKNKYKDLNKIIGKFKKSFKKKKKNSKKNY 276
Query: 177 KNEK 180
+N K
Sbjct: 277 ENIK 280
>gnl|CDD|227038 COG4694, COG4694, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 758
Score = 32.2 bits (73), Expect = 0.50
Identities = 29/104 (27%), Positives = 53/104 (50%), Gaps = 8/104 (7%)
Query: 85 KEKNKNKSRKEEKKKEAEEE-KKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKN 143
K+ N + + E KK+ ++ +KK KN+ + K+++EE+E+K + + KK E
Sbjct: 111 KKTNDDLEKIESKKESINKKNEKKIKNEASLQVKTQREEKEEKDFIADCWRNLYKKNE-- 168
Query: 144 KNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKAVRLTKL 187
+ +E + K+KK K+K K+ E K + V L K+
Sbjct: 169 -----ERFKEYLENFKRKKFKRKILKEFENAKINASEIVGLEKV 207
>gnl|CDD|223250 COG0172, SerS, Seryl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 429
Score = 32.2 bits (74), Expect = 0.53
Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 11/89 (12%)
Query: 103 EEKKKTKNKEKNKNKS-------RKEEEEKKK---EAEEKKKKRTKK-KEKNKNKSRKEE 151
E + K K + + +EE++K E EE + +R + KE + R E+
Sbjct: 9 ENPDAVREKLKKRGGDALDVDKLLELDEERRKLLRELEELQAERNELSKEIGRALKRGED 68
Query: 152 EEEEKKKKKKKKKKKRTKKKEEEKRKNEK 180
+ EE + K+ K+K + + +
Sbjct: 69 DAEELIAEVKELKEKLKELEAALDELEAE 97
>gnl|CDD|237035 PRK12280, rplW, 50S ribosomal protein L23; Reviewed.
Length = 158
Score = 31.3 bits (71), Expect = 0.53
Identities = 22/63 (34%), Positives = 36/63 (57%)
Query: 112 EKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKK 171
EK + + KE EEK+ +K+KK K+K+ + ++K+ + K KK KK TKK+
Sbjct: 96 EKEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTTKNTTKKATKKTTTKKE 155
Query: 172 EEE 174
E +
Sbjct: 156 EGK 158
Score = 29.7 bits (67), Expect = 1.7
Identities = 18/61 (29%), Positives = 33/61 (54%)
Query: 121 EEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEK 180
E E+++KE ++ +++ K K + K +KE++ EK KKK K + K+ K+ K
Sbjct: 94 ESEKEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTTKNTTKKATKKTTTK 153
Query: 181 A 181
Sbjct: 154 K 154
Score = 29.7 bits (67), Expect = 1.8
Identities = 21/63 (33%), Positives = 33/63 (52%)
Query: 29 EEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKN 88
E E+E++ KE +K K++KE+++KK K EK K + K K+ TKK
Sbjct: 94 ESEKEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTTKNTTKKATKKTTTK 153
Query: 89 KNK 91
K +
Sbjct: 154 KEE 156
Score = 29.0 bits (65), Expect = 2.6
Identities = 16/65 (24%), Positives = 35/65 (53%)
Query: 102 EEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKK 161
EE +K + + + + ++ + KK++ E+K+KK +K K K+ + ++ KK
Sbjct: 92 PEESEKEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTTKNTTKKATKKTT 151
Query: 162 KKKKK 166
KK++
Sbjct: 152 TKKEE 156
Score = 28.2 bits (63), Expect = 5.1
Identities = 21/64 (32%), Positives = 35/64 (54%)
Query: 6 EEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKN 65
E +K++K+ + +EK K++KE++E+K K EK K K+ + KK TKK
Sbjct: 94 ESEKEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTTKNTTKKATKKTTTK 153
Query: 66 KNKN 69
K +
Sbjct: 154 KEEG 157
Score = 28.2 bits (63), Expect = 5.3
Identities = 18/63 (28%), Positives = 37/63 (58%)
Query: 62 KEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKE 121
+++ K +++ E+K+ K + +KKEK + K ++ KK++ + K T K K ++KE
Sbjct: 96 EKEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTTKNTTKKATKKTTTKKE 155
Query: 122 EEE 124
E +
Sbjct: 156 EGK 158
>gnl|CDD|227441 COG5110, RPN1, 26S proteasome regulatory complex component
[Posttranslational modification, protein turnover,
chaperones].
Length = 881
Score = 32.2 bits (73), Expect = 0.56
Identities = 12/47 (25%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 92 SRKEEKKKEAEEEKKKTKNKEKN-KNKSRKEEEEKKKEAEEKKKKRT 137
E KK+ +++ + EK NK K++EE+++ +EE +
Sbjct: 1 MVDESDKKQQTIDEQSQISPEKQTPNKKDKKKEEEEQLSEEDAMLKG 47
Score = 29.1 bits (65), Expect = 4.6
Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 18 KKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKN 65
E +K + +E+ + +K+ NK K+K ++EEE+ K
Sbjct: 2 VDESDKKQQTIDEQSQISPEKQTPNK--KDKKKEEEEQLSEEDAMLKG 47
>gnl|CDD|223061 PHA03369, PHA03369, capsid maturational protease; Provisional.
Length = 663
Score = 32.3 bits (73), Expect = 0.56
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 48 KSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKK 106
+ E K+KR + ++ + K KK K+++ + KE + K E KK AE E K
Sbjct: 460 QEHGHERKRKRGGELKEELIETLKLVKKLKEEQESLAKELEA-TAHKSEIKKIAESEFK 517
>gnl|CDD|221175 pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polymerase III subunit
Rpc31. RNA polymerase III contains seventeen subunits
in yeasts and in human cells. Twelve of these are akin
to RNA polymerase I or II and the other five are RNA pol
III-specific, and form the functionally distinct groups
(i) Rpc31-Rpc34-Rpc82, and (ii) Rpc37-Rpc53. Rpc31,
Rpc34 and Rpc82 form a cluster of enzyme-specific
subunits that contribute to transcription initiation in
S.cerevisiae and H.sapiens. There is evidence that these
subunits are anchored at or near the N-terminal Zn-fold
of Rpc1, itself prolonged by a highly conserved but RNA
polymerase III-specific domain.
Length = 221
Score = 31.6 bits (72), Expect = 0.57
Identities = 19/108 (17%), Positives = 46/108 (42%), Gaps = 9/108 (8%)
Query: 50 RKEEEKKKRTKKKEKNKNKNR--KEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKK 107
+ ++++K KE + KE + K+ +K +++ EEE
Sbjct: 91 KYQKKRKIGPSIKEHPFDLELFPKELYSVMGINKKAGKKLALSKFKRKVGLFTEEEEDID 150
Query: 108 TKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEE 155
K E++ K+ EAE+ ++ K +E+ + + ++E+ ++
Sbjct: 151 EKLSML-------EKKLKELEAEDVDEEDEKDEEEEEEEEEEDEDFDD 191
Score = 31.3 bits (71), Expect = 0.67
Identities = 15/72 (20%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Query: 64 KNKNKNRKEEKKKKKKRRTKKK----EKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSR 119
NK +K K K++ + ++ S E+K KE E E ++++ + +
Sbjct: 122 INKKAGKKLALSKFKRKVGLFTEEEEDIDEKLSMLEKKLKELEAEDVDEEDEKDEEEEEE 181
Query: 120 KEEEEKKKEAEE 131
+EEE++ + ++
Sbjct: 182 EEEEDEDFDDDD 193
Score = 31.3 bits (71), Expect = 0.72
Identities = 21/96 (21%), Positives = 42/96 (43%)
Query: 9 KKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNK 68
+KK+K KE + +E +K K S+ + + T+++E K
Sbjct: 93 QKKRKIGPSIKEHPFDLELFPKELYSVMGINKKAGKKLALSKFKRKVGLFTEEEEDIDEK 152
Query: 69 NRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEE 104
EKK K+ E+++ +EE+++E +E+
Sbjct: 153 LSMLEKKLKELEAEDVDEEDEKDEEEEEEEEEEDED 188
Score = 28.6 bits (64), Expect = 4.6
Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 8/90 (8%)
Query: 75 KKKKKRRTKKKEKNKNKSR--KE------EKKKEAEEEKKKTKNKEKNKNKSRKEEEEKK 126
+KK+K KE + KE KK ++ ++ +E+ ++K
Sbjct: 93 QKKRKIGPSIKEHPFDLELFPKELYSVMGINKKAGKKLALSKFKRKVGLFTEEEEDIDEK 152
Query: 127 KEAEEKKKKRTKKKEKNKNKSRKEEEEEEK 156
EKK K + ++ ++ + EEEEEE+
Sbjct: 153 LSMLEKKLKELEAEDVDEEDEKDEEEEEEE 182
Score = 28.6 bits (64), Expect = 4.7
Identities = 15/51 (29%), Positives = 25/51 (49%)
Query: 130 EEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEK 180
++ KK K K K EEEE+ +K +KK + + E+ ++EK
Sbjct: 124 KKAGKKLALSKFKRKVGLFTEEEEDIDEKLSMLEKKLKELEAEDVDEEDEK 174
>gnl|CDD|222665 pfam14303, NAM-associated, No apical meristem-associated C-terminal
domain. This domain is found in a number of different
types of plant proteins including NAM-like proteins.
Length = 147
Score = 30.8 bits (70), Expect = 0.57
Identities = 37/135 (27%), Positives = 65/135 (48%), Gaps = 6/135 (4%)
Query: 55 KKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEE------KKKT 108
+ + K K+K K+ KKKKKR N+ ++E + E KK
Sbjct: 10 NILKNEPKWKSKRSELKKASKKKKKRSNSSPGSTSNEENEDEDDESTAESKRPEGRKKAK 69
Query: 109 KNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRT 168
+ ++K K++KEE EK+KE EE+ K + EK + + K++ E + K++KK T
Sbjct: 70 EKLRRDKLKAKKEEAEKEKEKEERFMKALAEAEKERAELEKKKAEAKLMKEEKKIMFADT 129
Query: 169 KKKEEEKRKNEKAVR 183
E+R+ + ++
Sbjct: 130 SSLSPEQRQYYEIMQ 144
>gnl|CDD|221028 pfam11208, DUF2992, Protein of unknown function (DUF2992). This
bacterial family of proteins has no known function.
However, the cis-regulatory yjdF motif, just upstream
from the gene encoding the proteins for this family, is
a small non-coding RNA, Rfam:RF01764. The yjdF motif is
found in many Firmicutes, including Bacillus subtilis.
In most cases, it resides in potential 5' UTRs of
homologues of the yjdF gene whose function is unknown.
However, in Streptococcus thermophilus, a yjdF RNA motif
is associated with an operon whose protein products
synthesise nicotinamide adenine dinucleotide (NAD+).
Also, the S. thermophilus yjdF RNA lacks typical yjdF
motif consensus features downstream of and including the
P4 stem. Thus, if yjdF RNAs are riboswitch aptamers, the
S. thermophilus RNAs might sense a distinct compound
that structurally resembles the ligand bound by other
yjdF RNAs. On the ohter hand, perhaps these RNAs have an
alternative solution forming a similar binding site, as
is observed with some SAM riboswitches.
Length = 132
Score = 30.7 bits (70), Expect = 0.58
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 7/88 (7%)
Query: 80 RRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKK 139
+ T+ + + K +K K+ + K+ K S K ++ K E E K++ K
Sbjct: 50 KFTEAVKVSIKKQKKINPKRLQRQAAKEVKKP----GISTKAQQALKLEHERNKQE---K 102
Query: 140 KEKNKNKSRKEEEEEEKKKKKKKKKKKR 167
K+++K K +E+E + + K++KKK K R
Sbjct: 103 KKRSKEKKEEEKERKRQLKQQKKKAKHR 130
Score = 29.5 bits (67), Expect = 1.5
Identities = 23/74 (31%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 16 TKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKK 75
+ KK+K N R + + K KK + K + + E E+ K+ KKK ++K K +E+++
Sbjct: 58 SIKKQKKINPKRLQRQAAKEVKKPGISTKAQQALKLEHERNKQEKKK-RSKEKKEEEKER 116
Query: 76 KKKKRRTKKKEKNK 89
K++ ++ KKK K++
Sbjct: 117 KRQLKQQKKKAKHR 130
>gnl|CDD|234874 PRK00955, PRK00955, hypothetical protein; Provisional.
Length = 620
Score = 32.2 bits (74), Expect = 0.58
Identities = 15/75 (20%), Positives = 31/75 (41%)
Query: 5 KEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEK 64
+EK ++ +K +N + + ++ R K +K ++K +
Sbjct: 546 PKEKAMQRALLQYRKPENYDLVYEALKKAGREDLIGNGPKCLIPPKKPKKKSNKKNNNNN 605
Query: 65 NKNKNRKEEKKKKKK 79
+ N K+ KKK+KK
Sbjct: 606 YSSNNSKKRKKKRKK 620
Score = 31.5 bits (72), Expect = 1.0
Identities = 16/75 (21%), Positives = 31/75 (41%), Gaps = 3/75 (4%)
Query: 28 KEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKN---KNRKEEKKKKKKRRTKK 84
+E+ +R + + +N + + +K R +K +KK KK
Sbjct: 546 PKEKAMQRALLQYRKPENYDLVYEALKKAGREDLIGNGPKCLIPPKKPKKKSNKKNNNNN 605
Query: 85 KEKNKNKSRKEEKKK 99
N +K RK+++KK
Sbjct: 606 YSSNNSKKRKKKRKK 620
>gnl|CDD|225100 COG2189, COG2189, Adenine specific DNA methylase Mod [DNA
replication, recombination, and repair].
Length = 590
Score = 32.1 bits (73), Expect = 0.60
Identities = 35/202 (17%), Positives = 54/202 (26%), Gaps = 9/202 (4%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKK 61
+ + KNK + E EE + ++N + ++ K +
Sbjct: 232 GSDSNKFVYIDHEYILVYAKNKYNRLELELEELDRQGNIYVIYDENDNYLKKNKLNEIFR 291
Query: 62 KEKNKNKNRKEEKKK--------KKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEK 113
K KNK + KK K + KK K +K
Sbjct: 292 KINFKNKIIGKPFNGSGRIWANFKKYLIKGLKADQNYNDNGYPRYYPFNLRYKKEKLDKK 351
Query: 114 NKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEE 173
+KN+ E +++ K KS K E + EK K R
Sbjct: 352 SKNRVIDPINGNGTTYGETARRKGYNDLKYIIKSIK-EVKIEKNPKAVPYLNDRILDYFA 410
Query: 174 EKRKNEKAVRLTKLSAFGISGY 195
AV G G
Sbjct: 411 GDFTTAHAVSYWNKEDKGNLGI 432
>gnl|CDD|218581 pfam05416, Peptidase_C37, Southampton virus-type processing
peptidase. Corresponds to Merops family C37.
Norwalk-like viruses (NLVs), including the Southampton
virus, cause acute non-bacterial gastroenteritis in
humans. The NLV genome encodes three open reading frames
(ORFs). ORF1 encodes a polyprotein, which is processed
by the viral protease into six proteins.
Length = 535
Score = 32.1 bits (73), Expect = 0.60
Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 9/103 (8%)
Query: 60 KKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSR 119
E K KN KK + K+ + + +E KK EE K +E +++ R
Sbjct: 228 ATPEGKKGKN----KKGRGKKHNAFSRRGLSDEEYDEYKKIREERGGKYSIQEYLEDRER 283
Query: 120 KEEEEKKKEAEE-----KKKKRTKKKEKNKNKSRKEEEEEEKK 157
EEE +++A E +++ + +++ K+RK+ +EE K
Sbjct: 284 YEEELAERQATEADFCEEEEAKIRQRIFGLRKTRKQRKEERAK 326
Score = 30.6 bits (69), Expect = 1.5
Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 23/113 (20%)
Query: 86 EKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNK---------SRKEEEEKKKEAEEKKKKR 136
E ++ + ++A E KK KNK+ K S +E +E KK EE+ K
Sbjct: 213 ESEEDDEGWYIEPQDATPEGKKGKNKKGRGKKHNAFSRRGLSDEEYDEYKKIREERGGKY 272
Query: 137 TKKKEKNKNKSRKEEE-------------EEEKKKKKKKKKKKRTKKKEEEKR 176
+ +E +++ R EEE EEE K +++ ++T+K+ +E+R
Sbjct: 273 S-IQEYLEDRERYEEELAERQATEADFCEEEEAKIRQRIFGLRKTRKQRKEER 324
>gnl|CDD|220371 pfam09736, Bud13, Pre-mRNA-splicing factor of RES complex. This
entry is characterized by proteins with alternating
conserved and low-complexity regions. Bud13 together
with Snu17p and a newly identified factor,
Pml1p/Ylr016c, form a novel trimeric complex. called The
RES complex, pre-mRNA retention and splicing complex.
Subunits of this complex are not essential for viability
of yeasts but they are required for efficient splicing
in vitro and in vivo. Furthermore, inactivation of this
complex causes pre-mRNA leakage from the nucleus. Bud13
contains a unique, phylogenetically conserved C-terminal
region of unknown function.
Length = 141
Score = 30.7 bits (70), Expect = 0.61
Identities = 27/99 (27%), Positives = 51/99 (51%), Gaps = 7/99 (7%)
Query: 80 RRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKK 139
R + + + R+E+++++ E+E+K+ K KE K +KEE EK+ E EK K +
Sbjct: 5 RDKSGRIIDIEEKREEKEREKEEKERKEEKEKEWGKGLVQKEEREKRLEELEKAKNKPLA 64
Query: 140 KEKNKNKSRKEEEEEEKK-------KKKKKKKKKRTKKK 171
+ + +E +E+E+ +KKK+K + K
Sbjct: 65 RYADDEDYDEELKEQERWDDPMAQFLRKKKEKTDKKGKP 103
Score = 28.0 bits (63), Expect = 5.3
Identities = 25/97 (25%), Positives = 46/97 (47%), Gaps = 12/97 (12%)
Query: 10 KKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNK----KNKNKSRKEEEKKKRTKKKEKN 65
K + ++++ + + KEE+E K K+KE K K + + R EE +K + K +
Sbjct: 7 KSGRIIDIEEKREEKEREKEEKERKEEKEKEWGKGLVQKEEREKRLEELEKAKNKPLARY 66
Query: 66 KNKNRKEEKKKKKKRR--------TKKKEKNKNKSRK 94
+ +E+ K+++R KKKEK K +
Sbjct: 67 ADDEDYDEELKEQERWDDPMAQFLRKKKEKTDKKGKP 103
Score = 27.7 bits (62), Expect = 6.9
Identities = 17/48 (35%), Positives = 33/48 (68%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKS 49
+ K+EEK+++K+ + +K+EK K + ++E+R K+ E+ +K KNK
Sbjct: 15 EEKREEKEREKEEKERKEEKEKEWGKGLVQKEEREKRLEELEKAKNKP 62
Score = 27.3 bits (61), Expect = 9.3
Identities = 25/101 (24%), Positives = 50/101 (49%), Gaps = 12/101 (11%)
Query: 51 KEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKN 110
+++ + ++++ + + KEEK++K+++ +KE K +KEE++K EE +K
Sbjct: 5 RDKSGRIIDIEEKREEKEREKEEKERKEEK---EKEWGKGLVQKEEREKRLEELEKAKNK 61
Query: 111 KEKNKNKSRKEEEEKKKEAEE---------KKKKRTKKKEK 142
+EE K++ KKK++T KK K
Sbjct: 62 PLARYADDEDYDEELKEQERWDDPMAQFLRKKKEKTDKKGK 102
>gnl|CDD|185594 PTZ00395, PTZ00395, Sec24-related protein; Provisional.
Length = 1560
Score = 32.4 bits (73), Expect = 0.62
Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 82 TKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKE 141
K+E + +K ++++EE ++ + E N +++ E +K +E KK + +
Sbjct: 546 IAKREDHPEGGTNRQKYEQSDEESVESSSSE-NSSENENEVTDKGEEIYSLLKKTINRID 604
Query: 142 KNKNKSRKEEEEEEKKKKKKK 162
NK +E+KKKK K
Sbjct: 605 MNKIPRPIINTQEKKKKKNLK 625
Score = 28.5 bits (63), Expect = 8.5
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 9/75 (12%)
Query: 12 KKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNK---NK 68
K+ + N+ K + +EE + E + +N+N+ + E+ KK N+ NK
Sbjct: 548 KREDHPEGGTNRQKYEQSDEESVESSSSENSSENENEVTDKGEEIYSLLKKTINRIDMNK 607
Query: 69 ------NRKEEKKKK 77
N +E+KKKK
Sbjct: 608 IPRPIINTQEKKKKK 622
>gnl|CDD|220297 pfam09581, Spore_III_AF, Stage III sporulation protein AF
(Spore_III_AF). This family represents the stage III
sporulation protein AF (Spore_III_AF) of the bacterial
endospore formation program, which exists in some but
not all members of the Firmicutes (formerly called
low-GC Gram-positives). The C-terminal region of these
proteins is poorly conserved.
Length = 185
Score = 31.1 bits (71), Expect = 0.62
Identities = 24/116 (20%), Positives = 54/116 (46%), Gaps = 1/116 (0%)
Query: 45 NKNKSRKEEEKKKRTKKKEKNKNKNR-KEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEE 103
S E + + KK+ + + EE K+ +++ +KK K + + ++ + E +E
Sbjct: 54 LSESSLIIENEIESKKKEIQASQRAYILEEYAKQLEKQVEKKLKEEYGVKVKDVEVEIDE 113
Query: 104 EKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKK 159
+ + K N + KEE ++K++++ + + K K + + EE E+ K
Sbjct: 114 DLESNNFDIKEVNVTLKEESKEKQKSKVEPVVIDTQTSKPKEEEEESEEAEKIKNF 169
>gnl|CDD|227392 COG5059, KIP1, Kinesin-like protein [Cytoskeleton].
Length = 568
Score = 32.0 bits (73), Expect = 0.65
Identities = 28/174 (16%), Positives = 59/174 (33%), Gaps = 11/174 (6%)
Query: 26 SRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTK--KKEKNKNKNRKEEKKKKKKRR-- 81
+ K K K K + + + SR+ EE K + E R++ + +
Sbjct: 326 TLKFASRAKSIKNKIQVNSSSDSSREIEEIKFDLSEDRSEIEILVFREQSQLSQSSLSGI 385
Query: 82 -----TKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKK--K 134
+ KKE KSR + K + K K + K + + ++
Sbjct: 386 FAYMQSLKKETETLKSRIDLIMKSIISGTFERKKLLKEEGWKYKSTLQFLRIEIDRLLLL 445
Query: 135 KRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKAVRLTKLS 188
+ + +K + + + ++ + + E EK ++ TKL+
Sbjct: 446 REEELSKKKTKIHKLNKLRHDLSSLLSSIPEETSDRVESEKASKLRSSASTKLN 499
>gnl|CDD|222977 PHA03089, PHA03089, late transcription factor VLTF-4; Provisional.
Length = 191
Score = 31.3 bits (71), Expect = 0.67
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 74 KKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKK 133
K KKK+ T +K+K K++K++K+KE E + + +N EE KK E
Sbjct: 49 KTSKKKKTTPRKKKTTKKTKKKKKEKEEVPELAAEELSDSEEN-----EENDKKVDYELP 103
Query: 134 KKRTKKKEKNK 144
K + E N
Sbjct: 104 KVQNTAAEVNH 114
>gnl|CDD|235943 PRK07133, PRK07133, DNA polymerase III subunits gamma and tau;
Validated.
Length = 725
Score = 32.1 bits (73), Expect = 0.67
Identities = 25/200 (12%), Positives = 57/200 (28%), Gaps = 1/200 (0%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKK 61
+EKK + + + K KN E ++ + K K +N K + +K
Sbjct: 378 NLDIKEKKIENENDIEGKSDTKNLEEGFETKDNKNKNSSFINKTENILTNSPLKDELLEK 437
Query: 62 KEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKE 121
+ N +E + + + + E + + + N K
Sbjct: 438 TTEIINIENPQEFEFGQIGNDIISTEIAQLDENQNLIDTGEFDLENNFSNSFNPENGNKI 497
Query: 122 EEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKN-EK 180
+E + + + K ++ + + +KN +K
Sbjct: 498 DENINETFDTSTISANLSENKTNFAQSFNNKDTNLINSEIPIDLIKDTITINNSQKNVKK 557
Query: 181 AVRLTKLSAFGISGYLLQWI 200
LS + ++ I
Sbjct: 558 NGNKDYLSVEEVINLIMLAI 577
Score = 32.1 bits (73), Expect = 0.67
Identities = 23/178 (12%), Positives = 46/178 (25%), Gaps = 12/178 (6%)
Query: 16 TKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKE--------EEKKKRTKKKEKNKN 67
++E K+ EE K KK +N++ E EE + K KN +
Sbjct: 357 ELEEEDENEIKFKKIEENSIDNLDIKEKKIENENDIEGKSDTKNLEEGFETKDNKNKNSS 416
Query: 68 KNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAE----EEKKKTKNKEKNKNKSRKEEE 123
K E + + + E +E E + + +
Sbjct: 417 FINKTENILTNSPLKDELLEKTTEIINIENPQEFEFGQIGNDIISTEIAQLDENQNLIDT 476
Query: 124 EKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKA 181
+ + +++ E + + K + K N
Sbjct: 477 GEFDLENNFSNSFNPENGNKIDENINETFDTSTISANLSENKTNFAQSFNNKDTNLIN 534
Score = 28.2 bits (63), Expect = 9.7
Identities = 24/155 (15%), Positives = 46/155 (29%), Gaps = 4/155 (2%)
Query: 32 EEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRR---TKKKEKN 88
+ ++ E K K + +KK +N+N + K + K KN
Sbjct: 355 LSELEEEDENEIKFKKIEENSIDNLDIKEKKIENENDIEGKSDTKNLEEGFETKDNKNKN 414
Query: 89 KNKSRKEEKKKEAEEEKKKTKNKEKNK-NKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKS 147
+ K E K + K N +E E + + + ++N+N
Sbjct: 415 SSFINKTENILTNSPLKDELLEKTTEIINIENPQEFEFGQIGNDIISTEIAQLDENQNLI 474
Query: 148 RKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKAV 182
E + E + K E + +
Sbjct: 475 DTGEFDLENNFSNSFNPENGNKIDENINETFDTST 509
>gnl|CDD|204414 pfam10211, Ax_dynein_light, Axonemal dynein light chain. Axonemal
dynein light chain proteins play a dynamic role in
flagellar and cilia motility. Eukaryotic cilia and
flagella are complex organelles consisting of a core
structure, the axoneme, which is composed of nine
microtubule doublets forming a cylinder that surrounds a
pair of central singlet microtubules. This
ultra-structural arrangement seems to be one of the most
stable micro-tubular assemblies known and is responsible
for the flagellar and ciliary movement of a large number
of organisms ranging from protozoan to mammals. This
light chain interacts directly with the N-terminal half
of the heavy chains.
Length = 189
Score = 31.0 bits (71), Expect = 0.69
Identities = 20/81 (24%), Positives = 43/81 (53%), Gaps = 5/81 (6%)
Query: 90 NKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRK 149
K+ + E+ K E++ K +EK + + R E E K EA EK +++E+ + + ++
Sbjct: 113 RKALQAEQGKSELEQEIKKLEEEKEELEKRVAELEAKLEAIEK-----REEEERQIEEKR 167
Query: 150 EEEEEEKKKKKKKKKKKRTKK 170
+E KK+ ++ K + ++
Sbjct: 168 HADEIAFLKKQNQQLKSQLEQ 188
Score = 28.7 bits (65), Expect = 3.7
Identities = 15/79 (18%), Positives = 40/79 (50%), Gaps = 7/79 (8%)
Query: 61 KKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRK 120
+ E+ K++ +E KK ++++ +K + +++ E +K EEE+ + + K
Sbjct: 117 QAEQGKSELEQEIKKLEEEKEELEKRVAELEAKLEAIEKREEEER-------QIEEKRHA 169
Query: 121 EEEEKKKEAEEKKKKRTKK 139
+E K+ ++ K + ++
Sbjct: 170 DEIAFLKKQNQQLKSQLEQ 188
Score = 27.9 bits (63), Expect = 7.2
Identities = 16/73 (21%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 75 KKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNK----EKNKNKSRKEEEEKKKEAE 130
+K + K E + + EE+K+E E+ + + K EK + + R+ EE++ +
Sbjct: 113 RKALQAEQGKSELEQEIKKLEEEKEELEKRVAELEAKLEAIEKREEEERQIEEKRHADEI 172
Query: 131 EKKKKRTKKKEKN 143
KK+ ++ +
Sbjct: 173 AFLKKQNQQLKSQ 185
Score = 27.6 bits (62), Expect = 8.4
Identities = 16/74 (21%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 98 KKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKK 157
+K + E+ K++ +++ K EE+K+E E++ + K E + + +E + EEK+
Sbjct: 113 RKALQAEQGKSELEQEIKKL-----EEEKEELEKRVAELEAKLEAIEKREEEERQIEEKR 167
Query: 158 KKKKKKKKKRTKKK 171
+ K+ ++
Sbjct: 168 HADEIAFLKKQNQQ 181
>gnl|CDD|236267 PRK08451, PRK08451, DNA polymerase III subunits gamma and tau;
Validated.
Length = 535
Score = 31.9 bits (73), Expect = 0.69
Identities = 16/88 (18%), Positives = 34/88 (38%), Gaps = 2/88 (2%)
Query: 18 KKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKK 77
K K K + + E KE N+ K K + + +E+ K + + ++ +
Sbjct: 446 KGAKIKIQKALKSAENPLQSLKEFKPSNEKK--KIDTESTAEMLEEEAKKDDEEVQETQL 503
Query: 78 KKRRTKKKEKNKNKSRKEEKKKEAEEEK 105
K+ ++ N+ EE K+ +
Sbjct: 504 KEATELQEFMINNEDLIEEAKELFGIKS 531
Score = 31.2 bits (71), Expect = 1.1
Identities = 17/86 (19%), Positives = 33/86 (38%), Gaps = 4/86 (4%)
Query: 52 EEEKKKRTKKKEKNKNKNRK-EEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKN 110
+ K K K + +N + +E K +++ E +E KK + E ++ + K
Sbjct: 446 KGAKIKIQKALKSAENPLQSLKEFKPSNEKKKIDTESTAEMLEEEAKKDDEEVQETQLKE 505
Query: 111 KEKNKNKSRKEE---EEKKKEAEEKK 133
+ + E EE K+ K
Sbjct: 506 ATELQEFMINNEDLIEEAKELFGIKS 531
>gnl|CDD|237496 PRK13766, PRK13766, Hef nuclease; Provisional.
Length = 773
Score = 31.8 bits (73), Expect = 0.71
Identities = 15/74 (20%), Positives = 41/74 (55%)
Query: 92 SRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEE 151
SR++EKK + E + K +K + +++ E++++ E+ K + + + +E+
Sbjct: 489 SRRKEKKMKEELKNLKGILNKKLQELDEEQKGEEEEKDEQLSLDDFVKSKGKEEEEEEEK 548
Query: 152 EEEEKKKKKKKKKK 165
EE++K+ ++ + +
Sbjct: 549 EEKDKETEEDEPEG 562
Score = 30.2 bits (69), Expect = 2.1
Identities = 16/72 (22%), Positives = 37/72 (51%)
Query: 44 KNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEE 103
+ K K KEE K + +K + + +++ ++++K + KEE+++E +E
Sbjct: 490 RRKEKKMKEELKNLKGILNKKLQELDEEQKGEEEEKDEQLSLDDFVKSKGKEEEEEEEKE 549
Query: 104 EKKKTKNKEKNK 115
EK K +++ +
Sbjct: 550 EKDKETEEDEPE 561
Score = 30.2 bits (69), Expect = 2.5
Identities = 21/75 (28%), Positives = 37/75 (49%)
Query: 64 KNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEE 123
+ K K KEE K K KK ++ + + EE++K+ + + + + +E+E
Sbjct: 490 RRKEKKMKEELKNLKGILNKKLQELDEEQKGEEEEKDEQLSLDDFVKSKGKEEEEEEEKE 549
Query: 124 EKKKEAEEKKKKRTK 138
EK KE EE + + K
Sbjct: 550 EKDKETEEDEPEGPK 564
Score = 29.8 bits (68), Expect = 3.1
Identities = 16/73 (21%), Positives = 37/73 (50%)
Query: 87 KNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNK 146
+ K K KEE K KK + ++ + +E++E+ + K K +++E+ + +
Sbjct: 490 RRKEKKMKEELKNLKGILNKKLQELDEEQKGEEEEKDEQLSLDDFVKSKGKEEEEEEEKE 549
Query: 147 SRKEEEEEEKKKK 159
+ +E EE++ +
Sbjct: 550 EKDKETEEDEPEG 562
Score = 28.7 bits (65), Expect = 6.8
Identities = 14/74 (18%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Query: 113 KNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKE----EEEEEKKKKKKKKKKKRT 168
+ K K KEE + K KK + +++K + + + E ++ + K K++++++++
Sbjct: 490 RRKEKKMKEELKNLKGILNKKLQELDEEQKGEEEEKDEQLSLDDFVKSKGKEEEEEEEKE 549
Query: 169 KKKEEEKRKNEKAV 182
+K +E + +
Sbjct: 550 EKDKETEEDEPEGP 563
>gnl|CDD|113290 pfam04514, BTV_NS2, Bluetongue virus non-structural protein NS2.
This family includes NS2 proteins from other members of
the Orbivirus genus. NS2 is a non-specific
single-stranded RNA-binding protein that forms large
homomultimers and accumulates in viral inclusion bodies
of infected cells. Three RNA binding regions have been
identified in Bluetongue virus serotype 17 at residues
2-11, 153-166 and 274-286. NS2 multimers also possess
nucleotidyl phosphatase activity. The precise function
of NS2 is not known, but it may be involved in the
transport and condensation of viral mRNAs.
Length = 363
Score = 31.8 bits (72), Expect = 0.71
Identities = 22/134 (16%), Positives = 52/134 (38%), Gaps = 10/134 (7%)
Query: 44 KNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEE 103
+ + + KEE+ K K E+ +E + +K ++E+++ A E
Sbjct: 162 REEREKEKEEQPMKPAFKPERWMGGPDSDEDENPLDEEAPDMTPETSKQDQKEERRAAVE 221
Query: 104 EKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEE--------- 154
+ + N N + + +K++ E+ +R E + ++ E +
Sbjct: 222 RRLAELVEMINWNLEERRRDLRKEQELEENVERDSDDEDEHGEDSEDGETKPESYITSEY 281
Query: 155 -EKKKKKKKKKKKR 167
E+ + +K K +R
Sbjct: 282 IERISEIRKMKDER 295
Score = 29.8 bits (67), Expect = 2.3
Identities = 20/92 (21%), Positives = 43/92 (46%), Gaps = 6/92 (6%)
Query: 94 KEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEE------KKKKRTKKKEKNKNKS 147
+EE++KE EE+ K K + +E++ EE + K+ +K+E+
Sbjct: 162 REEREKEKEEQPMKPAFKPERWMGGPDSDEDENPLDEEAPDMTPETSKQDQKEERRAAVE 221
Query: 148 RKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNE 179
R+ E E +++++ +K++E + E
Sbjct: 222 RRLAELVEMINWNLEERRRDLRKEQELEENVE 253
>gnl|CDD|220369 pfam09731, Mitofilin, Mitochondrial inner membrane protein.
Mitofilin controls mitochondrial cristae morphology.
Mitofilin is enriched in the narrow space between the
inner boundary and the outer membranes, where it forms a
homotypic interaction and assembles into a large
multimeric protein complex. The first 78 amino acids
contain a typical amino-terminal-cleavable mitochondrial
presequence rich in positive-charged and hydroxylated
residues and a membrane anchor domain. In addition, it
has three centrally located coiled coil domains.
Length = 493
Score = 31.5 bits (72), Expect = 0.73
Identities = 23/123 (18%), Positives = 55/123 (44%), Gaps = 10/123 (8%)
Query: 3 NKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKK 62
++ +K + K +++ + K ++EE K ++ ++K + +++ + + ++K
Sbjct: 173 DQLSKKLAELKAEEEEELERALKEKREELLSKLEEELLARLESKEAALEKQLRLEFEREK 232
Query: 63 EKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEE 122
E + KK ++K R + + + E+K K + +E NK K E
Sbjct: 233 E-------ELRKKYEEKLRQELE---RQAEAHEQKLKNELALQAIELQREFNKEIKEKVE 282
Query: 123 EEK 125
EE+
Sbjct: 283 EER 285
Score = 30.4 bits (69), Expect = 1.8
Identities = 28/124 (22%), Positives = 59/124 (47%), Gaps = 20/124 (16%)
Query: 70 RKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEA 129
+E ++ K++R + K + + + KEA EK+ R E E +K+E
Sbjct: 187 EEELERALKEKREELLSKLEEELLARLESKEAALEKQL-----------RLEFEREKEEL 235
Query: 130 EEKKKKRTKKKEKNKNKSRKEEEEEEKKKK----KKKKKKKRTKKKEEEKRKNEKAVRLT 185
+K +++ +++ + R+ E E+K K + + ++ K+ +EK + E+ RL
Sbjct: 236 RKKYEEKLRQELE-----RQAEAHEQKLKNELALQAIELQREFNKEIKEKVEEERNGRLA 290
Query: 186 KLSA 189
KL+
Sbjct: 291 KLAE 294
Score = 29.2 bits (66), Expect = 4.4
Identities = 25/139 (17%), Positives = 63/139 (45%), Gaps = 3/139 (2%)
Query: 4 KKEEKKKKKKRRTKKKEKNKNKSRKEEE---EEKRTKKKEKNKKNKNKSRKEEEKKKRTK 60
K EE+++ ++ +K+E+ +K +E E K +++ + + ++E KK K
Sbjct: 183 KAEEEEELERALKEKREELLSKLEEELLARLESKEAALEKQLRLEFEREKEELRKKYEEK 242
Query: 61 KKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRK 120
+++ + + E+K K + + E + +++ ++K E E + K E N
Sbjct: 243 LRQELERQAEAHEQKLKNELALQAIELQREFNKEIKEKVEEERNGRLAKLAELNSRLKGL 302
Query: 121 EEEEKKKEAEEKKKKRTKK 139
E+ + E + + ++
Sbjct: 303 EKALDSRSEAEDENHKVQQ 321
>gnl|CDD|218797 pfam05890, Ebp2, Eukaryotic rRNA processing protein EBP2. This
family consists of several Eukaryotic rRNA processing
protein EBP2 sequences. Ebp2p is required for the
maturation of 25S rRNA and 60S subunit assembly. Ebp2p
may be one of the target proteins of Rrs1p for executing
the signal to regulate ribosome biogenesis. This family
also plays a role in chromosome segregation.
Length = 270
Score = 31.2 bits (71), Expect = 0.76
Identities = 24/101 (23%), Positives = 42/101 (41%), Gaps = 5/101 (4%)
Query: 86 EKNKNKSRKEEKKKEAEEEKKKTKN-----KEKNKNKSRKEEEEKKKEAEEKKKKRTKKK 140
+K + K E K+A EE +K + K+ K ++ +EKK E+ KK + K+K
Sbjct: 118 QKVRKKLLAEAAAKKASEEARKQRELKKFGKQVQVEKLQERAKEKKDMLEKIKKLKKKRK 177
Query: 141 EKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKA 181
+ ++ K KKK ++ + KA
Sbjct: 178 GGGDEGDLFDFLVDDAAKGGSKKKGRKGGAARGKPNAKRKA 218
Score = 30.8 bits (70), Expect = 1.0
Identities = 30/122 (24%), Positives = 52/122 (42%), Gaps = 13/122 (10%)
Query: 56 KKRTKKKEKNKNKNRKEEKKKKK--KRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEK 113
K R K + K EE +K++ K+ K+ + K + R +EKK E+ KK K ++
Sbjct: 119 KVRKKLLAEAAAKKASEEARKQRELKKFGKQVQVEKLQERAKEKKDMLEKIKKLKKKRKG 178
Query: 114 NKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKK-----KKKRT 168
++ + A+ KK+ +K + K K+K K K KK+ +
Sbjct: 179 GGDEGDLFDFLVDDAAKGGSKKKGRKGGAARGKPNA------KRKAKDAKFGFGGKKRGS 232
Query: 169 KK 170
K
Sbjct: 233 KS 234
Score = 28.9 bits (65), Expect = 5.4
Identities = 31/143 (21%), Positives = 60/143 (41%), Gaps = 9/143 (6%)
Query: 38 KKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKK----KKKKRRTKKKEKNKNKSR 93
+ KK ++RK+ E KK K+ + K + R +EKK K KK + K+K
Sbjct: 126 AEAAAKKASEEARKQRELKKFGKQVQVEKLQERAKEKKDMLEKIKKLKKKRKGGGDEGDL 185
Query: 94 KEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAE-----EKKKKRTKKKEKNKNKSR 148
+ +A + K K ++ + + + K K+A+ +K+ ++ E + + S
Sbjct: 186 FDFLVDDAAKGGSKKKGRKGGAARGKPNAKRKAKDAKFGFGGKKRGSKSNTAESSNDLSG 245
Query: 149 KEEEEEEKKKKKKKKKKKRTKKK 171
++ + K KR K
Sbjct: 246 FSVKKMKGGGGAGKGGNKRPGKS 268
>gnl|CDD|204792 pfam11947, DUF3464, Protein of unknown function (DUF3464). This
family of proteins are functionally uncharacterized.
This protein is found in bacteria and eukaryotes.
Proteins in this family are typically between 137 to 196
amino acids in length.
Length = 149
Score = 30.4 bits (69), Expect = 0.76
Identities = 11/48 (22%), Positives = 18/48 (37%)
Query: 78 KKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEK 125
K+ +SRK+ K + K+K+K+K R E
Sbjct: 1 MASSRKRLPFEPKRSRKKGVKALRKAAVAKSKDKQKKPKSKRAASESG 48
>gnl|CDD|218312 pfam04889, Cwf_Cwc_15, Cwf15/Cwc15 cell cycle control protein.
This family represents Cwf15/Cwc15 (from
Schizosaccharomyces pombe and Saccharomyces cerevisiae
respectively) and their homologues. The function of
these proteins is unknown, but they form part of the
spliceosome and are thus thought to be involved in mRNA
splicing.
Length = 241
Score = 31.2 bits (71), Expect = 0.80
Identities = 27/147 (18%), Positives = 65/147 (44%), Gaps = 8/147 (5%)
Query: 11 KKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNR 70
K K R + + +++ RK + + + + +K K E+ K T N+
Sbjct: 40 KLKYR-QPGQGTEDELRKRDLRAELEEAERAHKSKKENKLAIEDADKSTNLDASNEGDED 98
Query: 71 KEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAE 130
+E+ + K++R ++ +N + + + + + + S E +E E
Sbjct: 99 DDEEDEIKRKRIEEDARN------SDADDSDSSSDSDSSDDDSDDDDSEDETAALLRELE 152
Query: 131 EKKKKRTKKKEKNKNKSRKEEEEEEKK 157
+ KK+R ++KE+ + + + EEE+ ++
Sbjct: 153 KIKKERAEEKER-EEEEKAAEEEKARE 178
>gnl|CDD|215590 PLN03123, PLN03123, poly [ADP-ribose] polymerase; Provisional.
Length = 981
Score = 31.7 bits (72), Expect = 0.83
Identities = 18/78 (23%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 74 KKKKKKRRTKKKEKNKNKSRKEEKKK--EAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEE 131
KK + + +K E+ K +S+K K+K + ++K K +++ + S ++K + E
Sbjct: 184 KKSPSEAKEEKAEERKQESKKGAKRKKDASGDDKSKKAKTDRDVSTSTAASQKKSSDLES 243
Query: 132 KKKKRTKKKEKNKNKSRK 149
K + ++K+ K+ +K
Sbjct: 244 KLEAQSKELWSLKDDLKK 261
Score = 31.3 bits (71), Expect = 1.2
Identities = 12/66 (18%), Positives = 30/66 (45%)
Query: 41 KNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKE 100
K+ + + EE K++ K ++ K+ + ++ KK K R ++ + + + +
Sbjct: 185 KSPSEAKEEKAEERKQESKKGAKRKKDASGDDKSKKAKTDRDVSTSTAASQKKSSDLESK 244
Query: 101 AEEEKK 106
E + K
Sbjct: 245 LEAQSK 250
Score = 30.9 bits (70), Expect = 1.6
Identities = 17/78 (21%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query: 18 KKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKE-KNKNKNRKEEKKK 76
KK ++ K K EE ++ +KK K KK+ + K ++ K ++ + + +
Sbjct: 184 KKSPSEAKEEKAEERKQESKKGAKRKKDASGDDKSKKAKTDRDVSTSTAASQKKSSDLES 243
Query: 77 KKKRRTKKKEKNKNKSRK 94
K + ++K+ K+ +K
Sbjct: 244 KLEAQSKELWSLKDDLKK 261
Score = 30.5 bits (69), Expect = 2.1
Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
Query: 30 EEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNK 89
+ +++ K ++ K K EE+K+ +KK K K ++K KK K +++
Sbjct: 173 DSDQEAVLPLVKKSPSEAKEEKAEERKQESKKGAKRKKDASGDDKSKK-----AKTDRDV 227
Query: 90 NKSRKEEKKKEAEEEKK 106
+ S +KK ++ E K
Sbjct: 228 STSTAASQKKSSDLESK 244
Score = 30.1 bits (68), Expect = 2.6
Identities = 19/77 (24%), Positives = 37/77 (48%)
Query: 91 KSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKE 150
KS E K+++AEE K+++K K K + +++ KK + + T +K + +
Sbjct: 185 KSPSEAKEEKAEERKQESKKGAKRKKDASGDDKSKKAKTDRDVSTSTAASQKKSSDLESK 244
Query: 151 EEEEEKKKKKKKKKKKR 167
E + K+ K K+
Sbjct: 245 LEAQSKELWSLKDDLKK 261
Score = 28.6 bits (64), Expect = 7.9
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 37 KKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEE 96
KK K + +++E KK K+K K+ + + K +K K + + ++ KS E
Sbjct: 184 KKSPSEAKEEKAEERKQESKKGAKRK-KDASGDDKSKKAKTDRDVSTSTAASQKKSSDLE 242
Query: 97 KKKEAE 102
K EA+
Sbjct: 243 SKLEAQ 248
Score = 28.2 bits (63), Expect = 9.1
Identities = 16/76 (21%), Positives = 37/76 (48%), Gaps = 11/76 (14%)
Query: 113 KNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKE 172
K+ +++++E+ E++K+ +K KR +K+ ++K KK K + T
Sbjct: 185 KSPSEAKEEKAEERKQESKKGAKR-----------KKDASGDDKSKKAKTDRDVSTSTAA 233
Query: 173 EEKRKNEKAVRLTKLS 188
+K+ ++ +L S
Sbjct: 234 SQKKSSDLESKLEAQS 249
>gnl|CDD|234465 TIGR04092, LTA_DltD, D-alanyl-lipoteichoic acid biosynthesis
protein DltD. Members of this protein family are DltD,
part of the DltABCD system widely distributed in the
Firmicutes for D-alanylation of lipoteichoic acids. The
most common form of LTA, as in Staphylococcus aureus,
has a backbone of polyglycerolphosphate.
Length = 383
Score = 31.4 bits (72), Expect = 0.85
Identities = 29/106 (27%), Positives = 42/106 (39%), Gaps = 6/106 (5%)
Query: 4 KKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKR--TKKKEKNKKNKNKSRK----EEEKKK 57
KK K + + +N KE++ R K K+K KK K + EE KK
Sbjct: 185 YANGKKLSKFDKVYLEPYYRNLLEKEDDLFSRFKLKYKKKIKKAAKKLPETYDWEELDKK 244
Query: 58 RTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEE 103
K+ +K N K +R KKK K S+K ++ E
Sbjct: 245 AEKEGKKRTTNNPFGIDNKYYNKRIKKKLKKLKGSQKNFDYLKSPE 290
Score = 30.6 bits (70), Expect = 1.4
Identities = 33/135 (24%), Positives = 52/135 (38%), Gaps = 8/135 (5%)
Query: 46 KNKSRKEEEKKK--------RTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEK 97
KN E K+ K +K K+ KK K + R +
Sbjct: 149 KNPKISTETKRYAAKRLLELSVVKSDKILENLLKKLYANGKKLSKFDKVYLEPYYRNLLE 208
Query: 98 KKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKK 157
K++ + K K K+K K ++K E E +KK ++ KK N + + K+
Sbjct: 209 KEDDLFSRFKLKYKKKIKKAAKKLPETYDWEELDKKAEKEGKKRTTNNPFGIDNKYYNKR 268
Query: 158 KKKKKKKKKRTKKKE 172
KKK KK K ++K
Sbjct: 269 IKKKLKKLKGSQKNF 283
>gnl|CDD|215038 PLN00040, PLN00040, Protein MAK16 homolog; Provisional.
Length = 233
Score = 30.9 bits (70), Expect = 0.86
Identities = 25/129 (19%), Positives = 53/129 (41%), Gaps = 5/129 (3%)
Query: 56 KKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEK-KKEAEEEKKKTKNKEKN 114
K+R K + + RK K ++K T ++ K + R+E K +K A+ EK K +
Sbjct: 109 KQRLTKMTQYLIRMRKLALKTREKIVTTPRKLLKRERRRESKAQKAAQLEKSIEKELLER 168
Query: 115 KNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEE 174
+ K ++ E+ + +E + +K KKK + + + E+
Sbjct: 169 LKSGTYGDIYNFPSKSYNKVLEMEEVEEAE----EELPKSDKNPNSKKKSRVHVEIEYED 224
Query: 175 KRKNEKAVR 183
+ + + +
Sbjct: 225 EIEYKSLMS 233
>gnl|CDD|217443 pfam03234, CDC37_N, Cdc37 N terminal kinase binding. Cdc37 is a
molecular chaperone required for the activity of
numerous eukaryotic protein kinases. This domain
corresponds to the N terminal domain which binds
predominantly to protein kinases and is found N terminal
to the Hsp (Heat shocked protein) 90-binding domain
pfam08565. Expression of a construct consisting of only
the N-terminal domain of Saccharomyces pombe Cdc37
results in cellular viability. This indicates that
interactions with the cochaperone Hsp90 may not be
essential for Cdc37 function.
Length = 172
Score = 30.5 bits (69), Expect = 0.87
Identities = 21/120 (17%), Positives = 54/120 (45%)
Query: 43 KKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAE 102
++ + K EE +K+R + ++ + K++ + + +K+
Sbjct: 40 RREQRKQEIEELEKERIMNDRLLERVDKLLSELKEESLDSSQAVMKSLNENFTDKENVEP 99
Query: 103 EEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKK 162
E+ + E ++ + E +EK A ++ ++ + K K + K ++ +E +K++KKK
Sbjct: 100 EQPTYNEMVEDLFDQVKDEVDEKNGAALIEELQKHRDKLKKEQKELLKKLDELEKEEKKK 159
Score = 27.8 bits (62), Expect = 7.6
Identities = 28/115 (24%), Positives = 50/115 (43%), Gaps = 3/115 (2%)
Query: 70 RKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEA 129
RK+E ++ +K R + + + KE + + K N+N + KE E ++
Sbjct: 44 RKQEIEELEKERIMNDRLLERVDKLLSELKEESLDSSQAVMKSLNENFTDKENVEPEQPT 103
Query: 130 EEKKKK---RTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKA 181
+ + K E ++ EE +K + K KK++K KK +E K EK
Sbjct: 104 YNEMVEDLFDQVKDEVDEKNGAALIEELQKHRDKLKKEQKELLKKLDELEKEEKK 158
>gnl|CDD|220172 pfam09309, FCP1_C, FCP1, C-terminal. The C-terminal domain of
FCP-1 is required for interaction with the carboxy
terminal domain of RAP74. Interaction relies extensively
on van der Waals contacts between hydrophobic residues
situated within alpha-helices in both domains.
Length = 263
Score = 31.1 bits (70), Expect = 0.91
Identities = 15/101 (14%), Positives = 41/101 (40%)
Query: 30 EEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNK 89
E + +K+K N+ + + + +K+ + + ++ + +K
Sbjct: 158 EGSDDSDSEKKKPPGNEEEQEQAPQPRKQQPPGPRREPDEGTPSSSERSNIGGRGPRGHK 217
Query: 90 NKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAE 130
K +E+++ E ++ N+++ + S +E EAE
Sbjct: 218 RKLNEEDEEDAESESSFESSNEDEEGSSSEADEMAAALEAE 258
Score = 28.8 bits (64), Expect = 4.3
Identities = 16/90 (17%), Positives = 38/90 (42%), Gaps = 11/90 (12%)
Query: 53 EEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEK-----------KKEA 101
++ KK N+ + + + +K++ ++E ++ E+ K++
Sbjct: 161 DDSDSEKKKPPGNEEEQEQAPQPRKQQPPGPRREPDEGTPSSSERSNIGGRGPRGHKRKL 220
Query: 102 EEEKKKTKNKEKNKNKSRKEEEEKKKEAEE 131
EE ++ E + S ++EE EA+E
Sbjct: 221 NEEDEEDAESESSFESSNEDEEGSSSEADE 250
>gnl|CDD|227615 COG5296, COG5296, Transcription factor involved in TATA site
selection and in elongation by RNA polymerase II
[Transcription].
Length = 521
Score = 31.6 bits (71), Expect = 0.92
Identities = 30/168 (17%), Positives = 71/168 (42%), Gaps = 2/168 (1%)
Query: 13 KRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKK--RTKKKEKNKNKNR 70
++R + S +E+ + E++ N+ +EE+ K R + K K++
Sbjct: 23 RKRAHDDLDDVLSSSSDEDNNENVDYAEESGGEGNEKSEEEKFKNPYRLEGKFKDEADRA 82
Query: 71 KEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAE 130
K + +R + E+ + S+ E+++ A +++ ++ + E AE
Sbjct: 83 KIMAMTEIERESILFEREEEISKLMERRELAIRMEQQHRSSGCTDTRRSTRYEPLTSAAE 142
Query: 131 EKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKN 178
EKKKK + K+ + + R E + ++ K K+ ++ ++
Sbjct: 143 EKKKKLLELKKTREREERLYSERHIELQRFKDYKELEESEQGLQEEYT 190
Score = 30.8 bits (69), Expect = 1.5
Identities = 24/151 (15%), Positives = 67/151 (44%)
Query: 4 KKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKE 63
K EE+K K R + K K++ K + ++ ++ + S+ E ++ + ++
Sbjct: 59 KSEEEKFKNPYRLEGKFKDEADRAKIMAMTEIERESILFEREEEISKLMERRELAIRMEQ 118
Query: 64 KNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEE 123
++++ + ++ + + K K E KK EE+ ++ + + +E
Sbjct: 119 QHRSSGCTDTRRSTRYEPLTSAAEEKKKKLLELKKTREREERLYSERHIELQRFKDYKEL 178
Query: 124 EKKKEAEEKKKKRTKKKEKNKNKSRKEEEEE 154
E+ ++ +++ + +E ++ SR ++ E
Sbjct: 179 EESEQGLQEEYTPSYAEEAVEDISRTDDFAE 209
>gnl|CDD|114709 pfam06003, SMN, Survival motor neuron protein (SMN). This family
consists of several eukaryotic survival motor neuron
(SMN) proteins. The Survival of Motor Neurons (SMN)
protein, the product of the spinal muscular
atrophy-determining gene, is part of a large
macromolecular complex (SMN complex) that functions in
the assembly of spliceosomal small nuclear
ribonucleoproteins (snRNPs). The SMN complex functions
as a specificity factor essential for the efficient
assembly of Sm proteins on U snRNAs and likely protects
cells from illicit, and potentially deleterious,
non-specific binding of Sm proteins to RNAs.
Length = 264
Score = 31.1 bits (70), Expect = 0.92
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 17 KKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKE 52
K KN++ + +E +E+ KK KN K KN+SRK+
Sbjct: 26 KNALKNEDCATPQENDEQNPGKKRKNNK-KNRSRKK 60
Score = 30.0 bits (67), Expect = 2.3
Identities = 27/175 (15%), Positives = 50/175 (28%), Gaps = 24/175 (13%)
Query: 57 KRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKK----------------- 99
K K E +E+ KKR+ KK +++ K K+
Sbjct: 26 KNALKNEDCATPQENDEQNPGKKRKNNKKNRSRKKCNAAPLKEWQVGDSCNAVWSEDGNL 85
Query: 100 -----EAEEEKKKT--KNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEE 152
+ ++K+ T N+ + + + + K+ N+ +S +E
Sbjct: 86 YTATITSIDQKRGTCVVFYTGYGNEEEQNLADLLTPPPDVDEDALKEANVNETESSTDES 145
Query: 153 EEEKKKKKKKKKKKRTKKKEEEKRKNEKAVRLTKLSAFGISGYLLQWIRNFLSGW 207
+ + + K FG G FLSGW
Sbjct: 146 DRSSHSHEVRSKSNFPMGPPSPWNPRFPPGPPPPPPGFGRHGEKPSGWPPFLSGW 200
>gnl|CDD|187626 cd05368, DHRS6_like_SDR_c, human DHRS6-like, classical (c) SDRs.
Human DHRS6, and similar proteins. These proteins are
classical SDRs, with a canonical active site tetrad and
a close match to the typical Gly-rich NAD-binding motif.
Human DHRS6 is a cytosolic type 2 (R)-hydroxybutyrate
dehydrogenase, which catalyses the conversion of
(R)-hydroxybutyrate to acetoacetate. Also included in
this subgroup is Escherichia coli UcpA (upstream cys P).
Classical SDRs are typically about 250 residues long,
while extended SDRs are approximately 350 residues.
Sequence identity between different SDR enzymes are
typically in the 15-30% range, but the enzymes share the
Rossmann fold NAD-binding motif and characteristic
NAD-binding and catalytic sequence patterns. These
enzymes catalyze a wide range of activities including
the metabolism of steroids, cofactors, carbohydrates,
lipids, aromatic compounds, and amino acids, and act in
redox sensing. Classical SDRs have an TGXXX[AG]XG
cofactor binding motif and a YXXXK active site motif,
with the Tyr residue of the active site motif serving as
a critical catalytic residue (Tyr-151, human
15-hydroxyprostaglandin dehydrogenase (15-PGDH)
numbering). In addition to the Tyr and Lys, there is
often an upstream Ser (Ser-138, 15-PGDH numbering)
and/or an Asn (Asn-107, 15-PGDH numbering) contributing
to the active site; while substrate binding is in the
C-terminal region, which determines specificity. The
standard reaction mechanism is a 4-pro-S hydride
transfer and proton relay involving the conserved Tyr
and Lys, a water molecule stabilized by Asn, and
nicotinamide. Extended SDRs have additional elements in
the C-terminal region, and typically have a TGXXGXXG
cofactor binding motif. Complex (multidomain) SDRs such
as ketoreductase domains of fatty acid synthase have a
GGXGXXG NAD(P)-binding motif and an altered active site
motif (YXXXN). Fungal type ketoacyl reductases have a
TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs
have lost catalytic activity and/or have an unusual
NAD(P)-binding motif and missing or unusual active site
residues. Reactions catalyzed within the SDR family
include isomerization, decarboxylation, epimerization,
C=N bond reduction, dehydratase activity,
dehalogenation, Enoyl-CoA reduction, and
carbonyl-alcohol oxidoreduction. Note: removed :
needed to make this chiodl smaller when drew final
trees: rmeoved text form description: Other proteins in
this subgroup include Thermoplasma acidophilum
aldohexose dehydrogenase, which has high dehydrogenase
activity against D-mannose, Bacillus subtilis BacC
involved in the biosynthesis of the dipeptide bacilysin
and its antibiotic moiety anticapsin, Sphingomonas
paucimobilis strain B90 LinC, involved in the
degradation of hexachlorocyclohexane isomers...... P).
Length = 241
Score = 30.9 bits (70), Expect = 0.93
Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 6/70 (8%)
Query: 296 IGKCMVMTYHRNKSPILASYDINGQALARCE-----QVRDLGVTFQKTLERQINDLIFIY 350
IG+ + + + R + ++A+ DIN + L E R L VT ++ + + I
Sbjct: 14 IGRAIALAFAREGANVIAT-DINEEKLKELERGPGITTRVLDVTDKEQVAALAKEEGRID 72
Query: 351 KLVNNQIFCP 360
L N F
Sbjct: 73 VLFNCAGFVH 82
>gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria
with the myosin-like domain [Function unknown].
Length = 499
Score = 31.5 bits (71), Expect = 0.93
Identities = 21/185 (11%), Positives = 85/185 (45%), Gaps = 4/185 (2%)
Query: 6 EEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKN 65
E++ + +R + E K + +E ++ ++ K + + + ++ + + + K
Sbjct: 96 EKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKT 155
Query: 66 KNKNRKEEKKKKKKRRTKKKE----KNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKE 121
+ R++ + + + + +K+ + KS+ + K + + +++ +N N ++
Sbjct: 156 LAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSAQIEQEAQNLATRANAAQAR 215
Query: 122 EEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKA 181
EE + A ++ ++++ S+K ++ + ++ ++++++ + + + R ++
Sbjct: 216 TEELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEV 275
Query: 182 VRLTK 186
+L
Sbjct: 276 AQLEA 280
>gnl|CDD|222658 pfam14296, O-ag_pol_Wzy, O-antigen polysaccharide polymerase Wzy.
This family includes O-antigen polysaccharide
polymerases. These enzymes link O-units via a glycosidic
linkage to form a long O-antigen. These enzymes vary in
specificity and sequence.
Length = 440
Score = 31.1 bits (71), Expect = 0.96
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 160 KKKKKKKRTKKKEEEKRKNEKAVRLTKLSAFGIS--GYLLQWIRNFL 204
+KKK+KK KK + E + K +R L F I+ L+ L
Sbjct: 103 RKKKRKKEKKKNQLEYERLLKNLRKLSLILFYITFIFSLIYLYEKLL 149
>gnl|CDD|236304 PRK08581, PRK08581, N-acetylmuramoyl-L-alanine amidase; Validated.
Length = 619
Score = 31.3 bits (71), Expect = 0.96
Identities = 20/160 (12%), Positives = 49/160 (30%), Gaps = 19/160 (11%)
Query: 16 TKKKEKNKNKSRKEEEEEKRTKKKEKNK-KNKNKSRKEEEKKKRTKKKEKNKNKNRKEEK 74
K+ N +++ K+ + K N N +KK T + + N +
Sbjct: 41 HDSKKSNDDETSKDTSSKDTDKADNNNTSNQDNN-----DKKFSTIDSSTSDSNNIIDFI 95
Query: 75 KKKKKRRTKKKEKNKNKSRKEEKKKEAE-------------EEKKKTKNKEKNKNKSRKE 121
K + + KNK E+ + ++ + NK+
Sbjct: 96 YKNLPQTNINQLLTKNKYDDNYSLTTLIQNLFNLNSDISDYEQPRNSEKSTNDSNKNSDS 155
Query: 122 EEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKK 161
+ + + K+ + ++ + + K ++ K
Sbjct: 156 SIKNDTDTQSSKQDKADNQKAPSSNNTKPSTSNKQPNSPK 195
Score = 29.8 bits (67), Expect = 3.5
Identities = 22/211 (10%), Positives = 65/211 (30%), Gaps = 33/211 (15%)
Query: 3 NKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKK 62
+K K K N +K + T K+ + + K
Sbjct: 52 SKDTSSKDTDKADNNNTSNQDNNDKKFSTIDSSTSDSNNIIDFIYKNLPQTNINQLLTKN 111
Query: 63 EKNKN-----------KNRKEEKKKKKKRRTKKKEKNKNKS-----RKEEKKKEAEEEKK 106
+ + N + ++ R ++K + NK+ + + + ++++K
Sbjct: 112 KYDDNYSLTTLIQNLFNLNSDISDYEQPRNSEKSTNDSNKNSDSSIKNDTDTQSSKQDKA 171
Query: 107 KTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKK--------- 157
+ + N ++ + + ++ + + + + ++ ++ +
Sbjct: 172 DNQKAPSSNNTKPSTSNKQPNSPKPTQPNQSNSQPASDDTANQKSSSKDNQSMSDSALDS 231
Query: 158 --------KKKKKKKKKRTKKKEEEKRKNEK 180
KK +K KK++ + N K
Sbjct: 232 ILDQYSEDAKKTQKDYASQSKKDKTETSNTK 262
Score = 29.4 bits (66), Expect = 4.2
Identities = 20/136 (14%), Positives = 50/136 (36%)
Query: 7 EKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNK 66
+K KN + + ++ + ++ N K ++ K + N+
Sbjct: 142 SEKSTNDSNKNSDSSIKNDTDTQSSKQDKADNQKAPSSNNTKPSTSNKQPNSPKPTQPNQ 201
Query: 67 NKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKK 126
+ ++ ++ + K ++ + S + + E+ KKT+ +++K K E
Sbjct: 202 SNSQPASDDTANQKSSSKDNQSMSDSALDSILDQYSEDAKKTQKDYASQSKKDKTETSNT 261
Query: 127 KEAEEKKKKRTKKKEK 142
K + + K K K
Sbjct: 262 KNPQLPTQDELKHKSK 277
>gnl|CDD|227818 COG5531, COG5531, SWIB-domain-containing proteins implicated in
chromatin remodeling [Chromatin structure and dynamics].
Length = 237
Score = 30.9 bits (70), Expect = 0.98
Identities = 26/105 (24%), Positives = 39/105 (37%), Gaps = 1/105 (0%)
Query: 86 EKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEK-KKEAEEKKKKRTKKKEKNK 144
EK+ K E E K + ++K S EE +KE +K T K + K
Sbjct: 25 EKDVGKLLFSEWTVRLEGRFKDNNDLIRDKFDSLAEEPRVLRKEKYNITRKTTGKNDLPK 84
Query: 145 NKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKAVRLTKLSA 189
+ +E + + K+ KKK KN + KLS
Sbjct: 85 EEDSSLPSSKETENGDTEGKETDKKKKSSTISKNSPSGEKVKLSP 129
Score = 28.9 bits (65), Expect = 4.0
Identities = 12/73 (16%), Positives = 25/73 (34%)
Query: 77 KKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKR 136
+ + E+ + +++ K +E + S KE E E +E KK+
Sbjct: 51 IRDKFDSLAEEPRVLRKEKYNITRKTTGKNDLPKEEDSSLPSSKETENGDTEGKETDKKK 110
Query: 137 TKKKEKNKNKSRK 149
+ S +
Sbjct: 111 KSSTISKNSPSGE 123
>gnl|CDD|219668 pfam07964, Red1, Rec10 / Red1. Rec10 / Red1 is involved in meiotic
recombination and chromosome segregation during
homologous chromosome formation. This protein localises
to the synaptonemal complex in S. cerevisiae and the
analogous structures (linear elements) in S. pombe. This
family is currently only found in fungi.
Length = 706
Score = 31.4 bits (71), Expect = 0.99
Identities = 32/181 (17%), Positives = 57/181 (31%), Gaps = 19/181 (10%)
Query: 1 CKNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKK---- 56
K KK E+ K + +K NKS K+ +
Sbjct: 397 AVTGDPHLKDPTIIAGKKLMNKLTS----EKINNPVKVVKVSKYKGNKSEKKRDINVLDT 452
Query: 57 ------KRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKK--- 107
+ +K+ K+K K + K ++KK+ N N + KK + K
Sbjct: 453 IFASPVSKELRKKVGKSKQTKLKNFKPVPNKSKKQLANNNSQNIKSKKVVKAKTNNKANL 512
Query: 108 --TKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKK 165
N K +++ + K R+ + +N N + K+ E+ K K
Sbjct: 513 QDVGECSSPPNNKEKNDKQTSTSSSVLKSDRSSIEVRNPNANVKKLEDTTYNAKFPTVSK 572
Query: 166 K 166
Sbjct: 573 N 573
Score = 30.2 bits (68), Expect = 2.5
Identities = 22/121 (18%), Positives = 35/121 (28%), Gaps = 9/121 (7%)
Query: 1 CKNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTK 60
K +++ K K + K KN + +++ + K K K K
Sbjct: 459 SKELRKKVGKSK----QTKLKNFKPVPNKSKKQLANNNSQNIKSKKVVKAKTNNKANLQD 514
Query: 61 KKEK-----NKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNK 115
E NK KN K+ ++ + KK E K KN
Sbjct: 515 VGECSSPPNNKEKNDKQTSTSSSVLKSDRSSIEVRNPNANVKKLEDTTYNAKFPTVSKNN 574
Query: 116 N 116
Sbjct: 575 A 575
Score = 29.5 bits (66), Expect = 3.6
Identities = 20/111 (18%), Positives = 34/111 (30%)
Query: 34 KRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSR 93
K K K+ KN + +K+ + K+K + K K E + +
Sbjct: 465 KVGKSKQTKLKNFKPVPNKSKKQLANNNSQNIKSKKVVKAKTNNKANLQDVGECSSPPNN 524
Query: 94 KEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNK 144
KE+ K+ K+ + KK E K + N
Sbjct: 525 KEKNDKQTSTSSSVLKSDRSSIEVRNPNANVKKLEDTTYNAKFPTVSKNNA 575
>gnl|CDD|240364 PTZ00332, PTZ00332, paraflagellar rod protein; Provisional.
Length = 589
Score = 31.5 bits (71), Expect = 0.99
Identities = 35/120 (29%), Positives = 61/120 (50%), Gaps = 9/120 (7%)
Query: 49 SRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKK----EAEEE 104
+ EEE K +K E K N++ + K KRR K++ + K + +K +AE
Sbjct: 239 GKCEEENKSFSKIHEVQKQANQETSQMKDAKRRLKQRCETDLKHIHDAIQKADLEDAEAM 298
Query: 105 KKKTKNKEKN-----KNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKK 159
K+ NKEK+ +N+ R+EE K + E++ +R + + K R EE + E+K++
Sbjct: 299 KRYATNKEKSERFIRENEDRQEEAWNKIQDLERQLQRLGTERFEEVKRRIEENDREEKRR 358
>gnl|CDD|234252 TIGR03545, TIGR03545, TIGR03545 family protein. This model
represents a relatively rare but broadly distributed
uncharacterized protein family, distributed in 1-2
percent of bacterial genomes, all of which have outer
membranes. In many of these genomes, it is part of a
two-gene pair.
Length = 555
Score = 31.2 bits (71), Expect = 1.0
Identities = 36/161 (22%), Positives = 60/161 (37%), Gaps = 1/161 (0%)
Query: 11 KKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNR 70
++ E K K E K + K K + +
Sbjct: 111 ERSTSGAVPETKDETPASAPSSIKEQKSSELKKVDSQLPDPRALLKGEDLKTVETAEEIE 170
Query: 71 KEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAE 130
K K ++K + K+K+ NK EE KK E KKK K ++E ++ KKE +
Sbjct: 171 KSLKAMQQKWK-KRKKDLPNKQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGK 229
Query: 131 EKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKK 171
K+K K +N ++ + + + KK + KR + K
Sbjct: 230 ADKQKIKSAKNDLQNDKKQLKADLAELKKAPQNDLKRLENK 270
Score = 30.5 bits (69), Expect = 1.8
Identities = 38/163 (23%), Positives = 68/163 (41%), Gaps = 12/163 (7%)
Query: 29 EEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKK--------R 80
E + + S +E+K KK + R K + K
Sbjct: 111 ERSTSGAVPETKDETPASAPSSIKEQKSSELKKVDSQLPDPRALLKGEDLKTVETAEEIE 170
Query: 81 RTKKKEKNKNKSRKE--EKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTK 138
++ K + K K RK+ K++ EE KK+ + +K K+ E ++ K+E ++ KK
Sbjct: 171 KSLKAMQQKWKKRKKDLPNKQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKK--EG 228
Query: 139 KKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKA 181
K +K K KS K + + +KK+ K + + + + KR K
Sbjct: 229 KADKQKIKSAKNDLQNDKKQLKADLAELKKAPQNDLKRLENKY 271
>gnl|CDD|223649 COG0576, GrpE, Molecular chaperone GrpE (heat shock protein)
[Posttranslational modification, protein turnover,
chaperones].
Length = 193
Score = 30.4 bits (69), Expect = 1.0
Identities = 19/86 (22%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Query: 51 KEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKN 110
++E+K E+ + + EE++ +++ ++ E + + E + + EE K K
Sbjct: 2 SDKEQKTEEPDAEETEEAEKSEEEEAEEEEPEEENELEEEQQEIAELEAQLEELKDKYLR 61
Query: 111 KEKN----KNKSRKEEEEKKKEAEEK 132
+ + ++ +E EE KK A EK
Sbjct: 62 AQAEFENLRKRTEREREEAKKYAIEK 87
Score = 28.8 bits (65), Expect = 3.6
Identities = 20/84 (23%), Positives = 46/84 (54%), Gaps = 3/84 (3%)
Query: 84 KKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEK---KKEAEEKKKKRTKKK 140
K++K + +E ++ E EE++ + + + +N+ +E++E + + EE K K + +
Sbjct: 4 KEQKTEEPDAEETEEAEKSEEEEAEEEEPEEENELEEEQQEIAELEAQLEELKDKYLRAQ 63
Query: 141 EKNKNKSRKEEEEEEKKKKKKKKK 164
+ +N ++ E E E+ KK +K
Sbjct: 64 AEFENLRKRTEREREEAKKYAIEK 87
Score = 28.1 bits (63), Expect = 6.8
Identities = 20/86 (23%), Positives = 45/86 (52%), Gaps = 9/86 (10%)
Query: 102 EEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKK 161
+E+K + + E+ + + EEEE ++E E++ + +++++ E + EE K K
Sbjct: 4 KEQKTEEPDAEETEEAEKSEEEEAEEEEPEEENELEEEQQEIAEL---EAQLEELKDKYL 60
Query: 162 KKK------KKRTKKKEEEKRKNEKA 181
+ + +KRT+++ EE +K
Sbjct: 61 RAQAEFENLRKRTEREREEAKKYAIE 86
>gnl|CDD|217902 pfam04111, APG6, Autophagy protein Apg6. In yeast, 15 Apg proteins
coordinate the formation of autophagosomes. Autophagy is
a bulk degradation process induced by starvation in
eukaryotic cells. Apg6/Vps30p has two distinct functions
in the autophagic process, either associated with the
membrane or in a retrieval step of the carboxypeptidase
Y sorting pathway.
Length = 356
Score = 31.0 bits (70), Expect = 1.1
Identities = 19/118 (16%), Positives = 54/118 (45%), Gaps = 2/118 (1%)
Query: 4 KKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKE 63
E + +K+R T K+ +K +S+ E E ++ K + R +E + +K++
Sbjct: 35 DSELRDAEKERDTYKQYLSKLESQNVEISNYEALDSELDELKKEEERLLDE-LEELEKED 93
Query: 64 KNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNK-EKNKNKSRK 120
+ + E +++K++ ++ + + + + + E+ + + + E + N+ K
Sbjct: 94 DDLDGELVELQEEKEQLENEELQYLREYNLFDRNNLQLEDNLQSLELQYEYSLNQLDK 151
>gnl|CDD|114219 pfam05483, SCP-1, Synaptonemal complex protein 1 (SCP-1).
Synaptonemal complex protein 1 (SCP-1) is the major
component of the transverse filaments of the
synaptonemal complex. Synaptonemal complexes are
structures that are formed between homologous
chromosomes during meiotic prophase.
Length = 787
Score = 31.2 bits (70), Expect = 1.1
Identities = 37/148 (25%), Positives = 74/148 (50%)
Query: 14 RRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEE 73
R ++ ++ K + ++ EE + + K + + + E K KK+ +NKNKN +E
Sbjct: 554 REEFIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEEL 613
Query: 74 KKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKK 133
++ K + K +NK + E K + E E K K + + ++E E KK +EEK
Sbjct: 614 HQENKALKKKGSAENKQLNAYEIKVNKLELELASAKQKFEEIIDNYQKEIEDKKISEEKL 673
Query: 134 KKRTKKKEKNKNKSRKEEEEEEKKKKKK 161
+ +K + +++ K ++E +K+ + K
Sbjct: 674 LEEVEKAKAIADEAVKLQKEIDKRCQHK 701
>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family. Emg1 and Nop14 are novel
proteins whose interaction is required for the
maturation of the 18S rRNA and for 40S ribosome
production.
Length = 809
Score = 31.1 bits (71), Expect = 1.1
Identities = 28/130 (21%), Positives = 59/130 (45%), Gaps = 18/130 (13%)
Query: 72 EEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTK-------------NKEKNKNKS 118
+ ++KK K+ K+ K+K K E++K EE++ + K K
Sbjct: 168 QPERKKSKKEVMKEVIAKSKFYKAERQKAKEEDEDLREELDDDFKDLMSLLRTVKPPPKP 227
Query: 119 RKEEEEKKKEAEEKKK-----KRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEE 173
EEK E +++ + +R + ++ K + +EE E+ KK + ++ +R + +EE
Sbjct: 228 PMTPEEKDDEYDQRVRELTFDRRAQPTDRTKTEEELAKEEAERLKKLEAERLRRMRGEEE 287
Query: 174 EKRKNEKAVR 183
+ + E +
Sbjct: 288 DDEEEEDSKE 297
>gnl|CDD|218899 pfam06102, DUF947, Domain of unknown function (DUF947). Family of
eukaryotic proteins with unknown function.
Length = 168
Score = 30.3 bits (69), Expect = 1.2
Identities = 31/107 (28%), Positives = 55/107 (51%)
Query: 27 RKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKE 86
KE EE ++ KK K+ + K + ++ + K K KNK++ R+ K+ KK+ + KE
Sbjct: 62 EKEIEELEKALKKTKDSEEKEELKRTLQSMKSRLKTLKNKDREREILKEHKKQEKELIKE 121
Query: 87 KNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKK 133
K K+ + K+ +KK + K+ + E++ KK +EKK
Sbjct: 122 GKKPYYLKKSEIKKLVLKKKFDELKKSKQLDKALEKKRKKNAGKEKK 168
>gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional.
Length = 1622
Score = 31.2 bits (71), Expect = 1.3
Identities = 28/110 (25%), Positives = 48/110 (43%), Gaps = 27/110 (24%)
Query: 120 KEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNE 179
K EE ++ EE+ + + K N N + +++ KKK K+ K K+EE+ E
Sbjct: 842 KMEEYVEENGEEEDDQTSSKPVANGNANNLKKDSSSKKKSKEGKS---VLIKQEER---E 895
Query: 180 KAVRLTKLSAFGISGYLLQWIRNFLSG-WI-----------QIVRVGTST 217
V +S +L+ +N L G W+ ++ RV +ST
Sbjct: 896 TGV---------VSWKVLERYKNALGGAWVVMILFLCYVLTEVFRVSSST 936
Score = 29.7 bits (67), Expect = 3.5
Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 7/59 (11%)
Query: 98 KKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSR--KEEEEE 154
K E E+ + ++ +K A KK + KK+ + KS K+EE E
Sbjct: 842 KMEEYVEENGEEEDDQTSSKPVAN-----GNANNLKKDSSSKKKSKEGKSVLIKQEERE 895
>gnl|CDD|150406 pfam09727, CortBP2, Cortactin-binding protein-2. This entry is the
first approximately 250 residues of cortactin-binding
protein 2. In addition to being a positional candidate
for autism this protein is expressed at highest levels
in the brain in humans. The human protein has six
associated ankyrin repeat domains pfam00023 towards the
C-terminus which act as protein-protein interaction
domains.
Length = 193
Score = 30.2 bits (68), Expect = 1.3
Identities = 28/93 (30%), Positives = 50/93 (53%), Gaps = 4/93 (4%)
Query: 4 KKEEKKKKKKRRTKKK----EKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRT 59
K K+K+ +RR + EK + K+ E EEEKR + K + + E+E+++
Sbjct: 89 KVMAKQKETQRRMLAQLLAAEKRQRKTVLELEEEKRKHIRYMKKSDDFTNLLEQERERLK 148
Query: 60 KKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKS 92
K E+ K++ K+E++ +K T ++E K KS
Sbjct: 149 KLLEQEKSQQAKKEQEHRKLLATLEEELGKLKS 181
>gnl|CDD|149438 pfam08374, Protocadherin, Protocadherin. The structure of
protocadherins is similar to that of classic cadherins
(pfam00028), but particularly on the cytoplasmic domains
they also have some unique features. They are expressed
in a variety of organisms and are found in high
concentrations in the brain where they seem to be
localised mainly at cell-cell contact sites. Their
expression seems to be developmentally regulated.
Length = 223
Score = 30.6 bits (69), Expect = 1.3
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 6/41 (14%)
Query: 136 RTKKKEKNKNKSRKEEEE------EEKKKKKKKKKKKRTKK 170
R +++K +KE E+ E K+KKKKK KKK++ K
Sbjct: 64 RQAERKKGYQAGKKETEDWFSPNQENKQKKKKKDKKKKSPK 104
Score = 27.9 bits (62), Expect = 7.9
Identities = 17/41 (41%), Positives = 25/41 (60%)
Query: 127 KEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKR 167
++AE KK + KKE S +E +++KKKK KKKK +
Sbjct: 64 RQAERKKGYQAGKKETEDWFSPNQENKQKKKKKDKKKKSPK 104
>gnl|CDD|148682 pfam07222, PBP_sp32, Proacrosin binding protein sp32. This family
consists of several mammalian specific proacrosin
binding protein sp32 sequences. sp32 is a sperm specific
protein which is known to bind with with 55- and 53-kDa
proacrosins and the 49-kDa acrosin intermediate. The
exact function of sp32 is unclear, it is thought however
that the binding of sp32 to proacrosin may be involved
in packaging the acrosin zymogen into the acrosomal
matrix.
Length = 243
Score = 30.4 bits (68), Expect = 1.3
Identities = 10/86 (11%), Positives = 39/86 (45%)
Query: 43 KKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAE 102
+N+S + ++ +E ++ + K + K+++ ++ K E
Sbjct: 158 TITENQSFQPWPERLHNNVEELLQSSLSLGGSVQVKAPKPKQEQLLSKLQEYLQEHKTEE 217
Query: 103 EEKKKTKNKEKNKNKSRKEEEEKKKE 128
++ ++ + +E+ + ++++EE + +
Sbjct: 218 KQPQEEQEEEEVEEEAKQEEGQGTDD 243
Score = 29.6 bits (66), Expect = 2.5
Identities = 11/77 (14%), Positives = 35/77 (45%)
Query: 29 EEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKN 88
+ E+ E+ ++ + K K+E+ +K ++ ++ K + + ++E+
Sbjct: 166 QPWPERLHNNVEELLQSSLSLGGSVQVKAPKPKQEQLLSKLQEYLQEHKTEEKQPQEEQE 225
Query: 89 KNKSRKEEKKKEAEEEK 105
+ + +E K++E +
Sbjct: 226 EEEVEEEAKQEEGQGTD 242
Score = 29.2 bits (65), Expect = 3.4
Identities = 14/88 (15%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 82 TKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKE 141
+N++ E+ EE ++ + K + K+++ K ++ ++ +
Sbjct: 156 HPTITENQSFQPWPERLHNNVEELLQSSLSLGGSVQV-KAPKPKQEQLLSKLQEYLQEHK 214
Query: 142 KNKNKSRKEEEEEEKKKKKKKKKKKRTK 169
+ + ++E+EEEE +++ K+++ + T
Sbjct: 215 TEEKQPQEEQEEEEVEEEAKQEEGQGTD 242
Score = 28.1 bits (62), Expect = 7.9
Identities = 14/79 (17%), Positives = 34/79 (43%)
Query: 101 AEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKK 160
E + E+ N + + + K K K++ +E +E K ++K
Sbjct: 159 ITENQSFQPWPERLHNNVEELLQSSLSLGGSVQVKAPKPKQEQLLSKLQEYLQEHKTEEK 218
Query: 161 KKKKKKRTKKKEEEKRKNE 179
+ ++++ ++ EEE ++ E
Sbjct: 219 QPQEEQEEEEVEEEAKQEE 237
>gnl|CDD|225620 COG3078, COG3078, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 169
Score = 30.2 bits (68), Expect = 1.4
Identities = 25/106 (23%), Positives = 54/106 (50%)
Query: 8 KKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKN 67
KK ++ R+K +K + K+R+E + E R +K++K +K + + + K++N+
Sbjct: 4 SKKTRRPRSKADKKARRKTREELDAEARDRKRQKKRKGLASGSRHSGGNENSGNKQQNQK 63
Query: 68 KNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEK 113
K+ + KK +K ++K + E+ K + E + +N E+
Sbjct: 64 KDPRIGSKKPIPLGVTEKVTKQHKPKSEKPKLSPQAELELLENDER 109
>gnl|CDD|225324 COG2604, COG2604, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 594
Score = 30.8 bits (70), Expect = 1.4
Identities = 23/115 (20%), Positives = 39/115 (33%), Gaps = 17/115 (14%)
Query: 20 EKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRT-----KKKEKNKNKNRKEEK 74
+K+KNK + +++ K K +K + K K +E + + K EK
Sbjct: 453 DKDKNKPFIKLILLSNNSQEKAVLKLLQKIKKNNDFIKEFETDALKLQEILEKVDSKSEK 512
Query: 75 KKKKKRRTKK-KEKNKNK-----------SRKEEKKKEAEEEKKKTKNKEKNKNK 117
+K + KE + + A K K+KE NK
Sbjct: 513 LEKISAKIDNIKELFDESKMSILQEILQPALHHIELNIARIYKLNIKDKEDFLNK 567
>gnl|CDD|220410 pfam09798, LCD1, DNA damage checkpoint protein. This is a family
of proteins which regulate checkpoint kinases. In
Schizosaccharomyces pombe this protein is called Rad26
and in Saccharomyces cerevisiae it is called LCD1.
Length = 648
Score = 30.9 bits (70), Expect = 1.5
Identities = 24/127 (18%), Positives = 42/127 (33%), Gaps = 20/127 (15%)
Query: 17 KKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKK-KRTKKKEKNKNKNRKEEKK 75
++K++ +NK + E K +E K + E+E+K +++ + N R E
Sbjct: 11 QQKQEERNKQKSRVNELKEKHDQELQKLKQELQSLEDERKFLVLEQRGLSANDLRTE--- 67
Query: 76 KKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKK 135
S E++ N K +K E KE
Sbjct: 68 ------LSPPSNLLKTSDASHIADESQP----------NSIKQKKREISPVKELVPLNPN 111
Query: 136 RTKKKEK 142
R K +K
Sbjct: 112 RIIKDDK 118
>gnl|CDD|216581 pfam01577, Peptidase_S30, Potyvirus P1 protease. The potyviridae
family positive stand RNA viruses with genome encoding a
polyprotein. members include zucchini yellow mosaic
virus, and turnip mosaic viruses which cause
considerable losses of crops worldwide. This family
consists of a C terminus region from various plant
potyvirus P1 proteins (found at the N terminus of the
polyprotein). The C terminus of P1 is a serine-type
protease responsible for autocatalytic cleavage between
P1 and the helper component protease pfam00851. The
entire P1 protein may be involved in virus-host
interactions.
Length = 245
Score = 30.4 bits (69), Expect = 1.5
Identities = 18/94 (19%), Positives = 35/94 (37%), Gaps = 4/94 (4%)
Query: 60 KKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSR 119
++ + + K+EKK + R + K K ++++ E + + +
Sbjct: 9 ERLLRKEMSKIKQEKKGRIILRKLSPAQVAKKREKLKREEREERQFLQGAYASIVSKITP 68
Query: 120 KEEEEKKKEAE----EKKKKRTKKKEKNKNKSRK 149
++ K KRT KK K K K +K
Sbjct: 69 IGTDKVSKTESVSFRTPYYKRTTKKMKKKKKKKK 102
Score = 29.2 bits (66), Expect = 3.5
Identities = 23/99 (23%), Positives = 39/99 (39%), Gaps = 5/99 (5%)
Query: 77 KKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKK---EAEEKK 133
K R +KE +K K K+ + + + +K + R+E EE++
Sbjct: 6 KVAERLLRKEMSKIKQEKKGRIIL--RKLSPAQVAKKREKLKREEREERQFLQGAYASIV 63
Query: 134 KKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKE 172
K T +K+ K+ KK KK+ KKK+
Sbjct: 64 SKITPIGTDKVSKTESVSFRTPYYKRTTKKMKKKKKKKK 102
Score = 28.8 bits (65), Expect = 4.2
Identities = 36/152 (23%), Positives = 55/152 (36%), Gaps = 14/152 (9%)
Query: 3 NKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNK------NKSRKEEEKK 56
K E+ +K+ K+EK ++ + KK+EK K+ + +
Sbjct: 5 AKVAERLLRKEMSKIKQEKKGRIILRKLSPAQVAKKREKLKREEREERQFLQGAYASIVS 64
Query: 57 KRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKN 116
K T +K + +RT KK K K K +K + ++ K K
Sbjct: 65 KITPIGTDKVSKTESVSFRTPYYKRTTKKMKKKKKKKKVVMSDKINYLIRQVLKIAKKKG 124
Query: 117 KSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSR 148
K E KKKKRT+ K K SR
Sbjct: 125 KP--------VELIGKKKKRTRVTFKRKGGSR 148
>gnl|CDD|221177 pfam11708, Slu7, Pre-mRNA splicing Prp18-interacting factor. The
spliceosome, an assembly of snRNAs (U1, U2, U4/U6, and
U5) and proteins, catalyzes the excision of introns from
pre-mRNAs in two successive trans-esterification
reactions. Step 2 depends upon integral spliceosome
constituents such as U5 snRNA and Prp8 and
non-spliceosomal proteins Prp16, Slu7, Prp18, and Prp22.
ATP hydrolysis by the DEAH-box enzyme Prp16 promotes a
conformational change in the spliceosome that leads to
protection of the 3'ss from targeted RNase H cleavage.
This change, which probably reflects binding of the 3'ss
PyAG in the catalytic centre of the spliceosome,
requires the ordered recruitment of Slu7, Prp18, and
Prp22 to the spliceosome. There is a close functional
relationship between Prp8, Prp18, and Slu7, and Prp18
interacts with Slu7, so that together they recruit Prp22
to the spliceosome. Most members of the family carry a
zinc-finger of the CCHC-type upstream of this domain.
Length = 236
Score = 30.5 bits (69), Expect = 1.5
Identities = 36/199 (18%), Positives = 79/199 (39%), Gaps = 23/199 (11%)
Query: 4 KKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKR----T 59
++ EK ++ +++ K K+++ + E+E++ E + + + + + R T
Sbjct: 24 EEYEKLEELRKKLKAKKEDDSDDTDYEDEDEELYLDESDMGDSDSKTRTTVRNLRIREDT 83
Query: 60 KKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEK--------------KKEAEEEK 105
K N + N K + R ++ + +K A E
Sbjct: 84 AKYLLNLDSNSAYYDPKSRSMRDDPLADPEDVLFAGDNFVRLSGEALEFEELQKFAWEAA 143
Query: 106 KKTKNKEKNKNKS-----RKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKK 160
+K + N + RK+E+EKK++ + +KK+ +K + K +E + +
Sbjct: 144 EKGGDVHLQANPTKLELLRKKEKEKKEQLKIQKKQSLLEKYGGEEHLDKPPKELLLGQSE 203
Query: 161 KKKKKKRTKKKEEEKRKNE 179
+ R KK++ K K E
Sbjct: 204 DYVEYDRAGKKKKAKSKYE 222
>gnl|CDD|222636 pfam14265, DUF4355, Domain of unknown function (DUF4355). This
family of proteins is found in bacteria and viruses.
Proteins in this family are typically between 180 and
214 amino acids in length.
Length = 125
Score = 29.5 bits (67), Expect = 1.5
Identities = 22/87 (25%), Positives = 43/87 (49%)
Query: 111 KEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKK 170
E+ K + KE ++ + + K +K+ ++K+ K K EE+ + + +K +K+ +
Sbjct: 2 PEEEKTFTDKEVDKAIAKEKAKWEKKQEEKKSEAEKLAKMSAEEKAEYELEKLEKELEEL 61
Query: 171 KEEEKRKNEKAVRLTKLSAFGISGYLL 197
+ E R+ KA LS G+ LL
Sbjct: 62 EAELARRELKAEAKKMLSEKGLPVELL 88
>gnl|CDD|178320 PLN02718, PLN02718, Probable galacturonosyltransferase.
Length = 603
Score = 30.6 bits (69), Expect = 1.5
Identities = 15/96 (15%), Positives = 40/96 (41%)
Query: 37 KKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEE 96
+ + N S + ++ N +K ++E+ + +K E+ + +R +
Sbjct: 78 QDGDFNSVVSYNSSDKNNDSLESEVDGGNNHKPKEEQAQVSQKTTVSSSEEVQISARDIQ 137
Query: 97 KKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEK 132
+ + K+++ + + R+ +EK KE +K
Sbjct: 138 LNHKTQFNPPTVKHEKNTRVQPRRATDEKVKEIRDK 173
Score = 28.7 bits (64), Expect = 7.2
Identities = 40/208 (19%), Positives = 78/208 (37%), Gaps = 24/208 (11%)
Query: 6 EEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEE----EKKKRTKK 61
E K K + + N S ++ + + E + N +K ++E+ +K +
Sbjct: 67 EGLKGPKLVIYQDGDFNSVVSYNSSDKNNDSLESEVDGGNNHKPKEEQAQVSQKTTVSSS 126
Query: 62 KEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKE----EKKKEAEEEKKKTK---NKEKN 114
+E + + K + K + + + EK KE ++ + K N
Sbjct: 127 EEVQISARDIQLNHKTQFNPPTVKHEKNTRVQPRRATDEKVKEIRDKIIQAKAYLNLAPP 186
Query: 115 KNKSR--KEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKK---------- 162
+ S+ KE + KE E TK K+ +K+ ++ + E K +
Sbjct: 187 GSNSQLVKELRLRTKELERAVGDATKDKDLSKSALQRMKSMEVTLYKASRVFPNCPAIAT 246
Query: 163 KKKKRTKKKEEEKRKNEK-AVRLTKLSA 189
K + T EE+ R + A L +L+A
Sbjct: 247 KLRAMTYNTEEQVRAQKNQAAYLMQLAA 274
>gnl|CDD|216833 pfam01991, vATP-synt_E, ATP synthase (E/31 kDa) subunit. This
family includes the vacuolar ATP synthase E subunit, as
well as the archaebacterial ATP synthase E subunit.
Length = 195
Score = 30.0 bits (68), Expect = 1.6
Identities = 19/86 (22%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 72 EEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEE 131
EE+ + +K ++ + K + E+K+K+AE EK+ + KN++R + ++E +
Sbjct: 18 EEEFEIEKAEAVEEAEKKIEEIYEKKEKQAEMEKQIIISNA--KNEARLKVLNAREELLD 75
Query: 132 KKKKRTKKKEKNKNKSRKEEEEEEKK 157
+ K++ N ++ + E ++ K
Sbjct: 76 SVFEEAKERLANLSEDKDEYKDLLKD 101
>gnl|CDD|198139 smart01071, CDC37_N, Cdc37 N terminal kinase binding. Cdc37 is a
molecular chaperone required for the activity of
numerous eukaryotic protein kinases. This domain
corresponds to the N terminal domain which binds
predominantly to protein kinases.and is found N terminal
to the Hsp (Heat shocked protein) 90-binding domain.
Expression of a construct consisting of only the
N-terminal domain of Saccharomyces pombe Cdc37 results
in cellular viability. This indicates that interactions
with the cochaperone Hsp90 may not be essential for
Cdc37 function.
Length = 154
Score = 29.7 bits (67), Expect = 1.6
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 6/98 (6%)
Query: 70 RKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKN---KSRKEEEEKK 126
R EE K K NK + + +E E + E + +KE EE
Sbjct: 44 RMEEIKNLKYELIMNDHLNKRIDKLLKGLREEELSPETPTYNEMLAELQDQLKKELEEAN 103
Query: 127 KEAE---EKKKKRTKKKEKNKNKSRKEEEEEEKKKKKK 161
++E E+ KK K +K + + RK+ +E EK++KKK
Sbjct: 104 GDSEGLLEELKKHRDKLKKEQKELRKKLDELEKEEKKK 141
Score = 27.4 bits (61), Expect = 8.1
Identities = 29/97 (29%), Positives = 41/97 (42%), Gaps = 8/97 (8%)
Query: 93 RKEEKKK-EAEEEKKKTKNKEKNKNKSRKEEEEKKKEA-------EEKKKKRTKKKEKNK 144
R EE K + E NK +K EEE E E + + K+ E+
Sbjct: 44 RMEEIKNLKYELIMNDHLNKRIDKLLKGLREEELSPETPTYNEMLAELQDQLKKELEEAN 103
Query: 145 NKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKA 181
S EE +K + K KK++K +KK +E K EK
Sbjct: 104 GDSEGLLEELKKHRDKLKKEQKELRKKLDELEKEEKK 140
>gnl|CDD|219342 pfam07227, DUF1423, Protein of unknown function (DUF1423). This
family represents a conserved region approximately 500
residues long within a number of Arabidopsis thaliana
proteins of unknown function.
Length = 446
Score = 30.5 bits (69), Expect = 1.6
Identities = 28/118 (23%), Positives = 56/118 (47%), Gaps = 10/118 (8%)
Query: 53 EEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEE-----KKKEAEEEKKK 107
EEK + KK + +E ++K ++ K E+ + K + +E + K+AE + +
Sbjct: 311 EEKMRMLKKARSALDACDRELEEKAREVSELKMERQRKKPQIDELESIVRLKQAEADMFQ 370
Query: 108 TKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKK 165
K +++R+E E ++ A K +K ++ K R E EEE++ ++ K
Sbjct: 371 LK-----ADEARREAERLQRIALAKTEKSEEEYASKYLKLRLSEAEEERQYLFEELKL 423
>gnl|CDD|218585 pfam05424, Duffy_binding, Duffy binding domain. This domain is
found in Plasmodium Duffy binding proteins. Plasmodium
vivax and Plasmodium knowlesi merozoites invade human
erythrocytes that express Duffy blood group surface
determinants. The Duffy receptor family is localised in
micronemes, an organelle found in all organisms of the
phylum Apicomplexa.
Length = 276
Score = 30.4 bits (69), Expect = 1.6
Identities = 27/77 (35%), Positives = 43/77 (55%)
Query: 27 RKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKE 86
R+ +++ ++ KKK K KK K+ K K KK K N+K+E K+KK+ K K+
Sbjct: 199 RERKKKLEKLKKKCKEKKCNKYCSKKCTKCKNACKKYKKWIDNKKKEWDKQKKKYKKYKK 258
Query: 87 KNKNKSRKEEKKKEAEE 103
+N K+ + K K A+E
Sbjct: 259 RNNKKNYSDIKDKYAKE 275
Score = 29.6 bits (67), Expect = 2.4
Identities = 26/77 (33%), Positives = 41/77 (53%)
Query: 95 EEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEE 154
E+KK+ E+ KKK K K+ NK S+K + K + KK KKKE +K K + ++ ++
Sbjct: 199 RERKKKLEKLKKKCKEKKCNKYCSKKCTKCKNACKKYKKWIDNKKKEWDKQKKKYKKYKK 258
Query: 155 EKKKKKKKKKKKRTKKK 171
KK K + K+
Sbjct: 259 RNNKKNYSDIKDKYAKE 275
>gnl|CDD|235219 PRK04098, PRK04098, sec-independent translocase; Provisional.
Length = 158
Score = 29.7 bits (67), Expect = 1.6
Identities = 21/103 (20%), Positives = 41/103 (39%), Gaps = 4/103 (3%)
Query: 5 KEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEK 64
KEE K KK E K K + EE ++ + E K+ ++ +K
Sbjct: 60 KEEALKYKKEFESAVESLKKKLKFEELDDLK-ITAENEIKSIQDLLQDYKKSLEEDTIPN 118
Query: 65 NKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKK 107
+ N+ E K ++ +++ + + K K + +K+K
Sbjct: 119 HLNEEVSNETKLTQE---SSSDESPKEVKLATKNKTKKHDKEK 158
Score = 29.7 bits (67), Expect = 1.7
Identities = 19/99 (19%), Positives = 39/99 (39%)
Query: 78 KKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRT 137
K+ K K++ ++ +KK + EE E + ++ KK EE
Sbjct: 60 KEEALKYKKEFESAVESLKKKLKFEELDDLKITAENEIKSIQDLLQDYKKSLEEDTIPNH 119
Query: 138 KKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKR 176
+E + +E ++ K+ K K KK ++++
Sbjct: 120 LNEEVSNETKLTQESSSDESPKEVKLATKNKTKKHDKEK 158
Score = 28.9 bits (65), Expect = 3.3
Identities = 31/129 (24%), Positives = 50/129 (38%), Gaps = 7/129 (5%)
Query: 38 KKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEK 97
K K N KS ++E K+E K K E + K++ K +E + K E +
Sbjct: 37 KAVKKTINDAKSTLDKEINIEEIKEEALKYKKEFESAVESLKKKLKFEELDDLKITAENE 96
Query: 98 KKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKK 157
K ++ + K + EE E +E + ++S KE + K
Sbjct: 97 IKSIQDLLQDYKKSLEEDTIPNHLNEEVSNE-------TKLTQESSSDESPKEVKLATKN 149
Query: 158 KKKKKKKKK 166
K KK K+K
Sbjct: 150 KTKKHDKEK 158
Score = 28.5 bits (64), Expect = 3.4
Identities = 23/107 (21%), Positives = 49/107 (45%)
Query: 19 KEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKK 78
KE N + ++E + K+ + K +E + K T + E ++ ++ KK
Sbjct: 52 KEINIEEIKEEALKYKKEFESAVESLKKKLKFEELDDLKITAENEIKSIQDLLQDYKKSL 111
Query: 79 KRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEK 125
+ T N+ S + + +E+ ++ + K KNK++K ++EK
Sbjct: 112 EEDTIPNHLNEEVSNETKLTQESSSDESPKEVKLATKNKTKKHDKEK 158
Score = 27.4 bits (61), Expect = 9.3
Identities = 13/65 (20%), Positives = 30/65 (46%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKK 61
+N+ + + + K E++ + EE TK +++ +++ + K +TKK
Sbjct: 94 ENEIKSIQDLLQDYKKSLEEDTIPNHLNEEVSNETKLTQESSSDESPKEVKLATKNKTKK 153
Query: 62 KEKNK 66
+K K
Sbjct: 154 HDKEK 158
>gnl|CDD|221049 pfam11262, Tho2, Transcription factor/nuclear export subunit
protein 2. THO and TREX form a eukaryotic complex which
functions in messenger ribonucleoprotein metabolism and
plays a role in preventing the transcription-associated
genetic instability. Tho2, along with four other
subunits forms THO.
Length = 296
Score = 30.4 bits (69), Expect = 1.6
Identities = 18/53 (33%), Positives = 27/53 (50%)
Query: 134 KKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKAVRLTK 186
K ++ EK + +KKKK+KK+ K KK EEE +K+ + TK
Sbjct: 30 DKEIERLEKQIKELDSSSSGIDKKKKEKKRLKSLIKKLEEELKKHIEHNEKTK 82
Score = 28.8 bits (65), Expect = 4.4
Identities = 18/60 (30%), Positives = 31/60 (51%)
Query: 33 EKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKS 92
+K ++ EK K + S +KKK+ KK+ K+ K +EE KK + K K++ +
Sbjct: 30 DKEIERLEKQIKELDSSSSGIDKKKKEKKRLKSLIKKLEEELKKHIEHNEKTKKRLSEEK 89
>gnl|CDD|220535 pfam10037, MRP-S27, Mitochondrial 28S ribosomal protein S27.
Members of this family of small ribosomal proteins
possess one of three conserved blocks of sequence found
in proteins that stimulate the dissociation of guanine
nucleotides from G-proteins, leaving open the
possibility that MRP-S27 might be a functional partner
of GTP-binding ribosomal proteins.
Length = 417
Score = 30.5 bits (69), Expect = 1.6
Identities = 18/140 (12%), Positives = 58/140 (41%), Gaps = 13/140 (9%)
Query: 20 EKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKK 79
EK ++ + ++ + + ++ EE +K +K E + + ++ + K
Sbjct: 290 EKLSSELDEASLKKLQEAIDKSESSELDEDLLLEEVEKSKQKFEPLLAQYGESFQEWRSK 349
Query: 80 RRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKK 139
+ K ++++ EE+ E+E + E++++ + +K ++
Sbjct: 350 LQALAKVESRSLLSVEERLPTIEKEDLEL-------------YEQRQQLWFFENRKLWQR 396
Query: 140 KEKNKNKSRKEEEEEEKKKK 159
K+K + ++ +E ++ +
Sbjct: 397 KKKLREQADEEYQQRHATRA 416
Score = 30.1 bits (68), Expect = 2.5
Identities = 20/97 (20%), Positives = 42/97 (43%), Gaps = 12/97 (12%)
Query: 91 KSRKEEKKKEAEEEKKKTKNKE------------KNKNKSRKEEEEKKKEAEEKKKKRTK 138
S +E E EK K K + ++K ++ + E + + E++ +
Sbjct: 313 SSELDEDLLLEEVEKSKQKFEPLLAQYGESFQEWRSKLQALAKVESRSLLSVEERLPTIE 372
Query: 139 KKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEK 175
K++ + R++ E +K ++KKK R + EE +
Sbjct: 373 KEDLELYEQRQQLWFFENRKLWQRKKKLREQADEEYQ 409
>gnl|CDD|224272 COG1353, COG1353, Predicted CRISPR-associated polymerase [Defense
mechanisms].
Length = 799
Score = 30.5 bits (69), Expect = 1.7
Identities = 29/148 (19%), Positives = 44/148 (29%), Gaps = 11/148 (7%)
Query: 27 RKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKE 86
R+ E E+ K+ KN ++ K + + +N +E K + +
Sbjct: 646 REARELEEEAKENR--GKNAIGLFDRSGGREFVVKWDTLEKRNVEELLKFRLSYELSNRN 703
Query: 87 KNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNK 146
K + K E K EE A K R + K
Sbjct: 704 AYILKRILYKLLKLLESR---------VKKLLEALEEYVLARARGSVKNRLEDGGKINYY 754
Query: 147 SRKEEEEEEKKKKKKKKKKKRTKKKEEE 174
S K EEE KK +K K+
Sbjct: 755 SLKNRLEEEIGKKLPEKGLSIAKQIRGL 782
Score = 28.6 bits (64), Expect = 7.6
Identities = 23/152 (15%), Positives = 49/152 (32%), Gaps = 9/152 (5%)
Query: 50 RKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTK 109
R+ E ++ K+ KN + + K + + +E + + +
Sbjct: 646 REARELEEEAKENR-GKNAIG-LFDRSGGREFVVKWDTLEK-----RNVEELLKFRLSYE 698
Query: 110 NKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTK 169
+N ++ + K E + KK + E+ +R + + + K K
Sbjct: 699 LSNRNAYILKRILYKLLKLLESRVKKLLEALEEYV-LARARGSVKNRLEDGGKINYYSLK 757
Query: 170 KK-EEEKRKNEKAVRLTKLSAFGISGYLLQWI 200
+ EEE K L+ LL +
Sbjct: 758 NRLEEEIGKKLPEKGLSIAKQIRGLNILLSLV 789
>gnl|CDD|173965 cd08045, TAF4, TATA Binding Protein (TBP) Associated Factor 4
(TAF4) is one of several TAFs that bind TBP and is
involved in forming Transcription Factor IID (TFIID)
complex. The TATA Binding Protein (TBP) Associated
Factor 4 (TAF4) is one of several TAFs that bind TBP and
are involved in forming the Transcription Factor IID
(TFIID) complex. TFIID is one of seven General
Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE,
TFIIF, and TFIID) that are involved in accurate
initiation of transcription by RNA polymerase II in
eukaryote. TFIID plays an important role in the
recognition of promoter DNA and assembly of the
pre-initiation complex. TFIID complex is composed of the
TBP and at least 13 TAFs. TAFs from various species were
originally named by their predicted molecular weight or
their electrophoretic mobility in polyacrylamide gels. A
new, unified nomenclature for the pol II TAFs has been
suggested to show the relationship between TAF orthologs
and paralogs. Several hypotheses are proposed for TAFs
functions such as serving as activator-binding sites,
core-promoter recognition or a role in essential
catalytic activity. Each TAF, with the help of a
specific activator, is required only for the expression
of subset of genes and is not universally involved for
transcription as are GTFs. In yeast and human cells,
TAFs have been found as components of other complexes
besides TFIID. Several TAFs interact via histone-fold
(HFD) motifs; HFD is the interaction motif involved in
heterodimerization of the core histones and their
assembly into nucleosome octamers. The minimal HFD
contains three alpha-helices linked by two loops and is
found in core histones, TAFS and many other
transcription factors. TFIID has a histone octamer-like
substructure. TAF4 domain interacts with TAF12 and makes
a novel histone-like heterodimer that binds DNA and has
a core promoter function of a subset of genes.
Length = 212
Score = 30.0 bits (68), Expect = 1.7
Identities = 16/59 (27%), Positives = 33/59 (55%), Gaps = 7/59 (11%)
Query: 123 EEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKA 181
E+ ++E EEK+ + +++ KSR E + + K+K K +K+E+E+ ++ A
Sbjct: 120 EQLEREEEEKRDEEERERLLRAAKSRSE-------QSRLKQKAKEMQKEEDEEMRHRAA 171
Score = 28.4 bits (64), Expect = 5.4
Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 16 TKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKK 75
+K+ + + +EEEE++ +++E+ + KSR ++ R K+K K K EE +
Sbjct: 112 VRKQLRFLEQLEREEEEKRDEEERERLLR-AAKSR---SEQSRLKQKAKEMQKEEDEEMR 167
Query: 76 KK 77
+
Sbjct: 168 HR 169
Score = 28.1 bits (63), Expect = 7.0
Identities = 10/47 (21%), Positives = 29/47 (61%)
Query: 83 KKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEA 129
+++E+ +++ +E + A+ ++++ K+K K ++E+EE + A
Sbjct: 124 REEEEKRDEEERERLLRAAKSRSEQSRLKQKAKEMQKEEDEEMRHRA 170
Score = 28.1 bits (63), Expect = 7.2
Identities = 15/62 (24%), Positives = 31/62 (50%), Gaps = 12/62 (19%)
Query: 96 EKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEE 155
E+ + EEEK+ +EE E+ A + + ++++ K+K K ++E+EE
Sbjct: 120 EQLEREEEEKR------------DEEERERLLRAAKSRSEQSRLKQKAKEMQKEEDEEMR 167
Query: 156 KK 157
+
Sbjct: 168 HR 169
>gnl|CDD|178669 PLN03122, PLN03122, Poly [ADP-ribose] polymerase; Provisional.
Length = 815
Score = 30.5 bits (69), Expect = 1.8
Identities = 19/58 (32%), Positives = 27/58 (46%)
Query: 52 EEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTK 109
EE K K+K +NK ++ KK KK + + N N E+ KE EE K +
Sbjct: 15 EEGKGGTRKQKAENKEHEGEQSPKKAKKEKKQDDSGNGNGKSAEDAVKEFEEFCKAIE 72
Score = 29.8 bits (67), Expect = 3.3
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 90 NKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKR-TKKKEKNKNKSR 148
+++R + AEE K T+ K+K +NK + E+ KK +EKK+ K+ +
Sbjct: 3 HETRSQAHAPAAEEGKGGTR-KQKAENKEHEGEQSPKKAKKEKKQDDSGNGNGKSAEDAV 61
Query: 149 KEEEEEEKKKK 159
KE EE K +
Sbjct: 62 KEFEEFCKAIE 72
>gnl|CDD|236080 PRK07734, motB, flagellar motor protein MotB; Reviewed.
Length = 259
Score = 30.1 bits (68), Expect = 1.8
Identities = 13/49 (26%), Positives = 27/49 (55%)
Query: 114 NKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKK 162
K+ ++ E +KE + + K+K + +++K++E EE K +KK
Sbjct: 65 VKDFLSDQKPEDEKELSASSLEAEQAKKKEEAEAKKKKEMEELKAVQKK 113
>gnl|CDD|217829 pfam03985, Paf1, Paf1. Members of this family are components of
the RNA polymerase II associated Paf1 complex. The Paf1
complex functions during the elongation phase of
transcription in conjunction with Spt4-Spt5 and
Spt16-Pob3i.
Length = 431
Score = 30.5 bits (69), Expect = 1.8
Identities = 12/82 (14%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Query: 72 EEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNK-NKSRKEEEEKKKEAE 130
+E K + KRR + + + ++E ++E + + + + ++ + + E+ E+
Sbjct: 350 KESKMRDKRRARLDPIDFEEVDEDEDEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSESS 409
Query: 131 EKKKKRTKKKEKNKNKSRKEEE 152
++ K ++ S + E
Sbjct: 410 SDVGSDSESKADKESASDSDSE 431
>gnl|CDD|227476 COG5147, REB1, Myb superfamily proteins, including transcription
factors and mRNA splicing factors [Transcription / RNA
processing and modification / Cell division and
chromosome partitioning].
Length = 512
Score = 30.5 bits (69), Expect = 1.8
Identities = 27/144 (18%), Positives = 53/144 (36%), Gaps = 8/144 (5%)
Query: 45 NKNKSRKEEEKKKRTKKKEKNKNKN--------RKEEKKKKKKRRTKKKEKNKNKSRKEE 96
N+N +R+ + + ++E N+ + K + K ++K + + KE
Sbjct: 141 NENSARRPDIYEDELLEREVNREASYRLRVPRVSKADVKPREKGEENNPDIEDLQEMKEL 200
Query: 97 KKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEK 156
K E NK + E ++E E K+K+ +++ + + +E+K
Sbjct: 201 KSASITRHLILPSKSEINKAFKKGETLALEQEINEYKEKKGLSRKQFCERIWSTDRDEDK 260
Query: 157 KKKKKKKKKKRTKKKEEEKRKNEK 180
KK KK K K
Sbjct: 261 FWPNIYKKLPYRDKKSIYKHLRRK 284
>gnl|CDD|222812 PHA00727, PHA00727, hypothetical protein.
Length = 278
Score = 30.2 bits (68), Expect = 1.9
Identities = 26/70 (37%), Positives = 43/70 (61%), Gaps = 4/70 (5%)
Query: 102 EEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRT-KKKEKNKNKSRKEEEEEEKKKKK 160
EEE +K ++ E+ K +K EE +K+ A+ K KR K EK + + +K++ E+ K +
Sbjct: 11 EEELRKAQSLEELK---QKYEEAQKQIADGKTLKRLYKVYEKREFELKKQQFEQLKAELS 67
Query: 161 KKKKKKRTKK 170
KKKKK + +K
Sbjct: 68 KKKKKFKKEK 77
>gnl|CDD|218598 pfam05470, eIF-3c_N, Eukaryotic translation initiation factor 3
subunit 8 N-terminus. The largest of the mammalian
translation initiation factors, eIF3, consists of at
least eight subunits ranging in mass from 35 to 170 kDa.
eIF3 binds to the 40 S ribosome in an early step of
translation initiation and promotes the binding of
methionyl-tRNAi and mRNA.
Length = 593
Score = 30.5 bits (69), Expect = 1.9
Identities = 38/188 (20%), Positives = 78/188 (41%), Gaps = 19/188 (10%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRK---------- 51
K+K+ E+ + K K + EE +K K +K K+ +
Sbjct: 25 KDKRFEEMTSTIKTIKNAMKINDWVSLLEEFDKLNKAYQKAKRVSENVKTPRFYIKTLVM 84
Query: 52 -----EEEKKKRTKKKEKNKNKNRK-EEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEK 105
E + KK+ +KN + K+K K+ K+ E + + R++ E+E+E+
Sbjct: 85 LEDFLNELWADKEAKKKMSKNNAKALNTLKQKVKKNNKQFEDDITRYRED---PESEDEE 141
Query: 106 KKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKK 165
++ + + ++E+E A E+ ++ + +E+E+ + KK ++
Sbjct: 142 EEEDEDDDDDGSDDEDEDEDGVGATEEVAASSESGVDRVKEDDEEDEDADLSKKDVLEEP 201
Query: 166 KRTKKKEE 173
K KK EE
Sbjct: 202 KMFKKPEE 209
>gnl|CDD|184064 PRK13461, PRK13461, F0F1 ATP synthase subunit B; Provisional.
Length = 159
Score = 29.2 bits (66), Expect = 2.0
Identities = 26/84 (30%), Positives = 43/84 (51%)
Query: 59 TKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKS 118
++ + NK K ++ +KK R K K + + K+ KEE KK EE K K +N + K
Sbjct: 35 DSRQSEIDNKIEKADEDQKKARELKLKNERELKNAKEEGKKIVEEYKSKAENVYEEIVKE 94
Query: 119 RKEEEEKKKEAEEKKKKRTKKKEK 142
EE + E + + +R K+K +
Sbjct: 95 AHEEADLIIERAKLEAQREKEKAE 118
>gnl|CDD|224308 COG1390, NtpE, Archaeal/vacuolar-type H+-ATPase subunit E [Energy
production and conversion].
Length = 194
Score = 29.6 bits (67), Expect = 2.0
Identities = 18/92 (19%), Positives = 47/92 (51%)
Query: 52 EEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNK 111
E+ KK ++ E+ + +E +++ +K + + K + + + +K E E E+++ +
Sbjct: 5 EKLIKKILREAEEEAEEILEEAREEAEKIKEEAKREAEEAIEEILRKAEKEAERERQRII 64
Query: 112 EKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKN 143
++R++ E K+E E + ++K +N
Sbjct: 65 SSALLEARRKLLEAKEEILESVFEAVEEKLRN 96
>gnl|CDD|233830 TIGR02350, prok_dnaK, chaperone protein DnaK. Members of this
family are the chaperone DnaK, of the DnaK-DnaJ-GrpE
chaperone system. All members of the seed alignment were
taken from completely sequenced bacterial or archaeal
genomes and (except for Mycoplasma sequence) found
clustered with other genes of this systems. This model
excludes DnaK homologs that are not DnaK itself, such as
the heat shock cognate protein HscA (TIGR01991).
However, it is not designed to distinguish among DnaK
paralogs in eukaryotes. Note that a number of dnaK genes
have shadow ORFs in the same reverse (relative to dnaK)
reading frame, a few of which have been assigned
glutamate dehydrogenase activity. The significance of
this observation is unclear; lengths of such shadow ORFs
are highly variable as if the presumptive protein
product is not conserved [Protein fate, Protein folding
and stabilization].
Length = 595
Score = 30.4 bits (69), Expect = 2.0
Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 8/81 (9%)
Query: 102 EEEKKKTKNKEKNK--NKSRKEEEEKKKEAE------EKKKKRTKKKEKNKNKSRKEEEE 153
EE ++ K E N +K RKEE E + A+ EK K K + K + E+
Sbjct: 501 EEIERMVKEAEANAEEDKKRKEEIEARNNADSLAYQAEKTLKEAGDKLPAEEKEKIEKAV 560
Query: 154 EEKKKKKKKKKKKRTKKKEEE 174
E K+ K + + K K EE
Sbjct: 561 AELKEALKGEDVEEIKAKTEE 581
>gnl|CDD|219589 pfam07808, RED_N, RED-like protein N-terminal region. This family
contains sequences that are similar to the N-terminal
region of Red protein. This and related proteins contain
a RED repeat which consists of a number of RE and RD
sequence elements. The region in question has several
conserved NLS sequences and a putative trimeric
coiled-coil region, suggesting that these proteins are
expressed in the nucleus. The function of Red protein is
unknown, but efficient sequestration to nuclear bodies
suggests that its expression may be tightly regulated of
that the protein self-aggregates extremely efficiently.
Length = 238
Score = 29.8 bits (67), Expect = 2.1
Identities = 31/145 (21%), Positives = 54/145 (37%), Gaps = 7/145 (4%)
Query: 4 KKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKE 63
KK++K +++ + EK N ++ E+R + + + + ++
Sbjct: 1 KKKKKYAYLRKQEENAEKEINPKYRDRARERRKGINKDYDPSSLAAYRAVAPDAKSDIDA 60
Query: 64 KNKNKNRKEEKKKKKKRRTKKKEKNK------NKSRKEEKKKEAEEEKKKTK-NKEKNKN 116
N +E K NK R E KKE EEE+ K K N+ K K
Sbjct: 61 AENRNNTIDESKFLGGDVEHTHLVKGLDFALLNKVRSELIKKEDEEEEGKDKVNQSKEKY 120
Query: 117 KSRKEEEEKKKEAEEKKKKRTKKKE 141
+ + +K AE + K K +
Sbjct: 121 LPSQAQNLTEKRAESESKITFKTEL 145
>gnl|CDD|240420 PTZ00441, PTZ00441, sporozoite surface protein 2 (SSP2);
Provisional.
Length = 576
Score = 30.3 bits (68), Expect = 2.1
Identities = 19/103 (18%), Positives = 34/103 (33%), Gaps = 5/103 (4%)
Query: 23 KNKSRKEEEEEKRTKKKEKNKKNKN-----KSRKEEEKKKRTKKKEKNKNKNRKEEKKKK 77
+ KK E +N K E + K+ N++ E++ +
Sbjct: 411 MEPEDDRDNNFNEPKKPENKGDGQNEPVIPKPLDNERDQSNKNKQVNPGNRHNSEDRYTR 470
Query: 78 KKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRK 120
R + NK+ K E E ++ K+K+ N K
Sbjct: 471 PHGRNNENRNYNNKNSDIPKHPERSEHEQPEDKKKKSSNNGYK 513
Score = 29.9 bits (67), Expect = 2.8
Identities = 21/140 (15%), Positives = 42/140 (30%), Gaps = 2/140 (1%)
Query: 24 NKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTK 83
S E + N + E + ++ + + ++ +
Sbjct: 369 GGSNSEFSSDVENPPNPPNPDIPEQEPNIPEDSNKEVPEDVPMEPEDDRDNNFNEPKKPE 428
Query: 84 KKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKN 143
K +N+ K E + KNK+ N E+ + + R + +
Sbjct: 429 NKGDGQNE--PVIPKPLDNERDQSNKNKQVNPGNRHNSEDRYTRPHGRNNENRNYNNKNS 486
Query: 144 KNKSRKEEEEEEKKKKKKKK 163
E E E+ + KKKK
Sbjct: 487 DIPKHPERSEHEQPEDKKKK 506
>gnl|CDD|227935 COG5648, NHP6B, Chromatin-associated proteins containing the HMG
domain [Chromatin structure and dynamics].
Length = 211
Score = 29.8 bits (67), Expect = 2.2
Identities = 37/170 (21%), Positives = 66/170 (38%), Gaps = 15/170 (8%)
Query: 4 KKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKE 63
K +K K K+ KKK+ N K + +++ +K K E K ++K
Sbjct: 51 KPRKKTKSKRLVRKKKDPNGPKRPLSAYFLYSAENRDEIRKENPKLTFGEVGKLLSEKW- 109
Query: 64 KNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEE 123
K+ ++KE ++ + ++ + E+E+ K K E E
Sbjct: 110 --------------KELTDEEKEPYYKEANSDRERYQREKEEYNKKLPNKAPIGPFIENE 155
Query: 124 EKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEE 173
K + E E+ K S+ E +E KKKK K K+ K++ +
Sbjct: 156 PKIRPKVEGPSPDKALVEETKIISKAWSELDESKKKKYIDKYKKLKEEYD 205
>gnl|CDD|206228 pfam14058, PcfK, PcfK-like protein. The PcfK-like protein family
includes the Enterococcus faecalis PcfK protein, which
is functionally uncharacterized. This family of proteins
is found in bacteria and viruses. Proteins in this
family are typically between 137 and 257 amino acids in
length. There are two completely conserved residues (D
and L) that may be functionally important.
Length = 136
Score = 28.9 bits (65), Expect = 2.2
Identities = 12/56 (21%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 121 EEEEKKKEAEEKKKKRTKKKEKNKNKSRKE--EEEEEKKKKKKKKKKKRTKKKEEE 174
+ K + E+ K ++RKE + ++++ +K +K+ K++KK E
Sbjct: 72 IKVGKPINCRVTVNHTVELTEEEKAEARKEALKAYQQEELRKIQKRSKKSKKAEPV 127
Score = 27.3 bits (61), Expect = 9.4
Identities = 12/62 (19%), Positives = 26/62 (41%)
Query: 63 EKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEE 122
E + + + + E+ K ++RKE K +EE +K + + K K+ +
Sbjct: 69 EDDIKVGKPINCRVTVNHTVELTEEEKAEARKEALKAYQQEELRKIQKRSKKSKKAEPVQ 128
Query: 123 EE 124
+
Sbjct: 129 GQ 130
>gnl|CDD|236498 PRK09401, PRK09401, reverse gyrase; Reviewed.
Length = 1176
Score = 30.3 bits (69), Expect = 2.2
Identities = 17/55 (30%), Positives = 23/55 (41%)
Query: 69 NRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEE 123
R +E KK K K +N E + E EE +K N + + KEEE
Sbjct: 824 ERYKEYKKSKGYVLVIKLENGGGLELEGEFSEKEEAEKFYNNLIEVEKVEEKEEE 878
>gnl|CDD|218896 pfam06098, Radial_spoke_3, Radial spoke protein 3. This family
consists of several radial spoke protein 3 (RSP3)
sequences. Eukaryotic cilia and flagella present in
diverse types of cells perform motile, sensory, and
developmental functions in organisms from protists to
humans. They are centred by precisely organised,
microtubule-based structures, the axonemes. The axoneme
consists of two central singlet microtubules, called the
central pair, and nine outer doublet microtubules. These
structures are well-conserved during evolution. The
outer doublet microtubules, each composed of A and B
sub-fibres, are connected to each other by nexin links,
while the central pair is held at the centre of the
axoneme by radial spokes. The radial spokes are T-shaped
structures extending from the A-tubule of each outer
doublet microtubule to the centre of the axoneme. Radial
spoke protein 3 (RSP3), is present at the proximal end
of the spoke stalk and helps in anchoring the radial
spoke to the outer doublet. It is thought that radial
spokes regulate the activity of inner arm dynein through
protein phosphorylation and dephosphorylation.
Length = 288
Score = 30.0 bits (68), Expect = 2.3
Identities = 16/60 (26%), Positives = 36/60 (60%)
Query: 121 EEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEK 180
EEEE + +++++ ++ + R EE E ++++K+++KK+ ++K+ EK EK
Sbjct: 150 EEEELAELRQQQRQFEQRRNAELAETQRLEEAERRRREEKERRKKQDKERKQREKETAEK 209
>gnl|CDD|219913 pfam08576, DUF1764, Eukaryotic protein of unknown function
(DUF1764). This is a family of eukaryotic proteins of
unknown function. This family contains many hypothetical
proteins.
Length = 98
Score = 28.2 bits (63), Expect = 2.3
Identities = 19/61 (31%), Positives = 30/61 (49%)
Query: 123 EEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKAV 182
EEKK E +K+ K K +K+ + + K KK +K+ KKK+E E++
Sbjct: 2 EEKKNEKTDKRDIDDIFSNIKKRKKKKKRTAKTARPKATKKGQKKDKKKDEFPEFPEESK 61
Query: 183 R 183
R
Sbjct: 62 R 62
Score = 28.2 bits (63), Expect = 2.3
Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 4/88 (4%)
Query: 94 KEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEE 153
KEEKK E +++ + + +K +++KK+ A+ + K TKK +K K + E
Sbjct: 1 KEEKKNEKTDKRDI----DDIFSNIKKRKKKKKRTAKTARPKATKKGQKKDKKKDEFPEF 56
Query: 154 EEKKKKKKKKKKKRTKKKEEEKRKNEKA 181
E+ K+++ + +EE K N A
Sbjct: 57 PEESKRRRTEDGLPIYTEEELKIGNPDA 84
Score = 27.0 bits (60), Expect = 6.8
Identities = 18/66 (27%), Positives = 28/66 (42%)
Query: 39 KEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKK 98
KE+ K K R ++ KK++K K + K + K K+ KK +K E+
Sbjct: 1 KEEKKNEKTDKRDIDDIFSNIKKRKKKKKRTAKTARPKATKKGQKKDKKKDEFPEFPEES 60
Query: 99 KEAEEE 104
K E
Sbjct: 61 KRRRTE 66
>gnl|CDD|225087 COG2176, PolC, DNA polymerase III, alpha subunit (gram-positive
type) [DNA replication, recombination, and repair].
Length = 1444
Score = 30.4 bits (69), Expect = 2.4
Identities = 34/167 (20%), Positives = 65/167 (38%), Gaps = 8/167 (4%)
Query: 14 RRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEE 73
+ + + +N E+E + KK + K+ K K + K K N +
Sbjct: 76 AKVEFDIEVRNVDITEQEIQTYFKKIIEQLSVKSPIFKSLLNKLKLKVKGNNILIEQVLN 135
Query: 74 KKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKK 133
+ + KNKS + +KK ++ + E N +E E+ ++ E+
Sbjct: 136 NPEF--------DHFKNKSPELQKKLQSFGFPQLLIEFEVNDISEEQEFEKFEEAINEEV 187
Query: 134 KKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEK 180
+K ++ + + K + E + EK K +K R K EE + K
Sbjct: 188 EKAAQEALEAEKKLKAESPKVEKPKPLFDGQKGRKIKSTEEIKPLIK 234
Score = 28.4 bits (64), Expect = 7.8
Identities = 21/96 (21%), Positives = 39/96 (40%)
Query: 3 NKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKK 62
N + + K K +KK ++ + E E +E+ + ++ EE +K +
Sbjct: 136 NPEFDHFKNKSPELQKKLQSFGFPQLLIEFEVNDISEEQEFEKFEEAINEEVEKAAQEAL 195
Query: 63 EKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKK 98
E K + K +K K ++ K KS +E K
Sbjct: 196 EAEKKLKAESPKVEKPKPLFDGQKGRKIKSTEEIKP 231
>gnl|CDD|220600 pfam10147, CR6_interact, Growth arrest and DNA-damage-inducible
proteins-interacting protein 1. Members of this family
of proteins act as negative regulators of G1 to S cell
cycle phase progression by inhibiting cyclin-dependent
kinases. Inhibitory effects are additive with GADD45
proteins but occur also in the absence of GADD45
proteins. Furthermore, they act as a repressor of the
orphan nuclear receptor NR4A1 by inhibiting AB
domain-mediated transcriptional activity.
Length = 217
Score = 29.4 bits (66), Expect = 2.4
Identities = 19/104 (18%), Positives = 56/104 (53%), Gaps = 5/104 (4%)
Query: 84 KKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKE-- 141
++++ + ++R++ ++ E + K + +++ E+K + A+E+K++ +
Sbjct: 109 REQQKEKEARRQAREAEIAKNMAKMPQMIADWRAQKRKREQKARAAKERKERLVAEAREH 168
Query: 142 ---KNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKAV 182
+ + +E ++K+K++KKK K K++E+E+++ V
Sbjct: 169 FGYWVDPRDPRFQEMLQQKEKEEKKKVKEAKRREKEEKRMAALV 212
Score = 29.4 bits (66), Expect = 2.5
Identities = 24/105 (22%), Positives = 48/105 (45%), Gaps = 8/105 (7%)
Query: 8 KKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKN 67
+ ++ R ++KEK + +E E K K + + +++ E+K R K+ K +
Sbjct: 102 NQMLEENREQQKEKEARRQAREAEIAKNMAKMPQMIADWRAQKRKREQKARAAKERKERL 161
Query: 68 KNRKEE--------KKKKKKRRTKKKEKNKNKSRKEEKKKEAEEE 104
E + + + ++KEK + K KE K++E EE+
Sbjct: 162 VAEAREHFGYWVDPRDPRFQEMLQQKEKEEKKKVKEAKRREKEEK 206
Score = 29.4 bits (66), Expect = 3.1
Identities = 29/119 (24%), Positives = 58/119 (48%), Gaps = 5/119 (4%)
Query: 26 SRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKE--KNKNKNRKEEKKKKKKRRTK 83
EEEE + + + + +KE+E +++ ++ E KN K + + ++R +
Sbjct: 88 EELEEEEREWYPSLNQMLEENREQQKEKEARRQAREAEIAKNMAKMPQMIADWRAQKRKR 147
Query: 84 KKEKNKNKSRKEEKKKEAEEE---KKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKK 139
+++ K RKE EA E ++ + +KE+EEKKK E K++++ +K
Sbjct: 148 EQKARAAKERKERLVAEAREHFGYWVDPRDPRFQEMLQQKEKEEKKKVKEAKRREKEEK 206
>gnl|CDD|235778 PRK06319, PRK06319, DNA topoisomerase I/SWI domain fusion protein;
Validated.
Length = 860
Score = 30.2 bits (68), Expect = 2.4
Identities = 15/36 (41%), Positives = 24/36 (66%)
Query: 105 KKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKK 140
+KKTK K+K+ + K + KK+++ K KK TKK+
Sbjct: 748 EKKTKAKKKSASTKGKAAKTVKKKSKAKSKKTTKKR 783
Score = 30.2 bits (68), Expect = 2.7
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 134 KKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKK 170
+K+TK K+K+ + K + +KK K K KK + +
Sbjct: 748 EKKTKAKKKSASTKGKAAKTVKKKSKAKSKKTTKKRA 784
Score = 29.8 bits (67), Expect = 2.9
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 56 KKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNK 91
+K+TK K+K+ + K K KKK + K K+ K +
Sbjct: 748 EKKTKAKKKSASTKGKAAKTVKKKSKAKSKKTTKKR 783
Score = 29.0 bits (65), Expect = 5.7
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 33 EKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKN 69
EK+TK K+K+ K K+ K +KK + K K+ K +
Sbjct: 748 EKKTKAKKKSASTKGKAAKTVKKKSKAKSKKTTKKRA 784
Score = 28.6 bits (64), Expect = 7.5
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 138 KKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKK 171
+KK K K KS + + K KKK K K + K
Sbjct: 748 EKKTKAKKKSASTKGKAAKTVKKKSKAKSKKTTK 781
>gnl|CDD|236277 PRK08493, PRK08493, NADH dehydrogenase subunit G; Validated.
Length = 819
Score = 30.1 bits (68), Expect = 2.5
Identities = 14/55 (25%), Positives = 25/55 (45%)
Query: 111 KEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKK 165
+E + ++ KEA + ++K + + E +EE KK+ KK KK
Sbjct: 445 EEAILKSLEEFKQSIVKEAALSILEEIREKVLEQAEQGCENQEEVKKEVPKKVKK 499
Score = 29.7 bits (67), Expect = 3.3
Identities = 29/117 (24%), Positives = 45/117 (38%), Gaps = 9/117 (7%)
Query: 78 KKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRT 137
++ K + +S +E EE ++ K E+ + +EE KK E KK
Sbjct: 444 EEEAILKSLEEFKQSIVKEAALSILEEIRE-KVLEQAEQGCENQEEVKK----EVPKKVK 498
Query: 138 KKKEKNKNKSRKE----EEEEEKKKKKKKKKKKRTKKKEEEKRKNEKAVRLTKLSAF 190
K E + +E EE EK + KK T E+ ++ A L KL
Sbjct: 499 KIPEVDTYLLLEELGINEETYEKLEALLAKKNNFTLVVGEDLYAHKNAKNLAKLLGL 555
>gnl|CDD|185429 PTZ00074, PTZ00074, 60S ribosomal protein L34; Provisional.
Length = 135
Score = 28.9 bits (65), Expect = 2.5
Identities = 20/41 (48%), Positives = 27/41 (65%)
Query: 51 KEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNK 91
EE+K + KEK K K +K++KKKKKK++T KK K K
Sbjct: 95 VEEQKIVKQVLKEKAKQKKQKKKKKKKKKKKTSKKAAKKKK 135
Score = 28.5 bits (64), Expect = 3.6
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 28 KEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNK 68
EE++ + KEK K+ K K +K+++KKK+T KK K K
Sbjct: 95 VEEQKIVKQVLKEKAKQKKQKKKKKKKKKKKTSKKAAKKKK 135
>gnl|CDD|239500 cd03406, Band_7_3, A subgroup of the band 7 domain of flotillin
(reggie) like proteins. This subgroup contains proteins
similar to stomatin, prohibitin, flotillin, HlfK/C and
podicin. Many of these band 7 domain-containing
proteins are lipid raft-associated. Individual proteins
of this band 7 domain family may cluster to form
membrane microdomains which may in turn recruit
multiprotein complexes. Microdomains formed from
flotillin proteins may in addition be dynamic units with
their own regulatory functions. Flotillins have been
implicated in signal transduction, vesicle trafficking,
cytoskeleton rearrangement and are known to interact
with a variety of proteins. Stomatin interacts with and
regulates members of the degenerin/epithelia Na+ channel
family in mechanosensory cells of Caenorhabditis elegans
and vertebrate neurons and participates in trafficking
of Glut1 glucose transporters. Prohibitin may act as a
chaperone for the stabilization of mitochondrial
proteins. Prokaryotic HflK/C plays a role in the
decision between lysogenic and lytic cycle growth during
lambda phage infection. Flotillins have been implicated
in the progression of prion disease, in the pathogenesis
of neurodegenerative diseases such as Parkinson's and
Alzheimer's disease and, in cancer invasion and
metastasis. Mutations in the podicin gene give rise to
autosomal recessive steroid resistant nephritic
syndrome.
Length = 280
Score = 29.8 bits (67), Expect = 2.5
Identities = 30/109 (27%), Positives = 45/109 (41%), Gaps = 5/109 (4%)
Query: 36 TKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKE 95
TK K +N E EK K +K K ++ E ++KK +K K
Sbjct: 153 TKPKIPEAIRRNYELMEAEKTKLLIAIQKQKVVEKEAETERKKAVIEAEKVAQVAKILFG 212
Query: 96 EKKKEAEEEKKKTK-----NKEKNKNKSRKEEEEKKKEAEEKKKKRTKK 139
+K E E EK+ ++ + K K+ E +KEAE K K T +
Sbjct: 213 QKVMEKETEKRISEIEDEAFLAREKAKADAEYYTAQKEAEANKLKLTPE 261
>gnl|CDD|236942 PRK11637, PRK11637, AmiB activator; Provisional.
Length = 428
Score = 30.0 bits (68), Expect = 2.6
Identities = 31/127 (24%), Positives = 61/127 (48%), Gaps = 17/127 (13%)
Query: 47 NKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKR--RTKKKEKNKNKSRKEEKKK----- 99
N++R+E + + ++E K EEK+ ++K ++ ++ K + + E+KK
Sbjct: 165 NQARQETIAELKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGL 224
Query: 100 EAEEEKKKTKNKEKNKNKSR------KEEEEKK----KEAEEKKKKRTKKKEKNKNKSRK 149
E+ +K + + E N+SR + E E K +EA E + R K+K+ + S
Sbjct: 225 ESSLQKDQQQLSELRANESRLRDSIARAEREAKARAEREAREAARVRDKQKQAKRKGSTY 284
Query: 150 EEEEEEK 156
+ E E+
Sbjct: 285 KPTESER 291
>gnl|CDD|227447 COG5117, NOC3, Protein involved in the nuclear export of
pre-ribosomes [Translation, ribosomal structure and
biogenesis / Intracellular trafficking and secretion].
Length = 657
Score = 30.0 bits (67), Expect = 2.7
Identities = 31/145 (21%), Positives = 56/145 (38%), Gaps = 3/145 (2%)
Query: 12 KKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRK 71
+ R TKK E+ + E E +K + KS +EE++ + + + N +
Sbjct: 12 EPRTTKKAERELTQEDIEFFNENPEDLGKKVIYDLKKSSSDEEEQDYELRPRVSSSWNNE 71
Query: 72 EEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEE 131
+ K + N EE E+E E + + K + EE+K
Sbjct: 72 SYNRLPIKTKDNVVADVNNG---EEFLSESESEASLEIDSDIKDEKQKSLEEQKIAPEIP 128
Query: 132 KKKKRTKKKEKNKNKSRKEEEEEEK 156
K++ +KE+ + K EE E+
Sbjct: 129 VKQQIDSEKERIASICTKIIEEPEE 153
Score = 28.8 bits (64), Expect = 5.8
Identities = 14/49 (28%), Positives = 24/49 (48%)
Query: 134 KKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKAV 182
+K K E NK S++E+++ KK +K +K + + E R E
Sbjct: 344 EKARKYWEANKPVSKREKKDIFHLSKKLRKIEKERLRIQSEMRDAEDIE 392
>gnl|CDD|205286 pfam13105, DUF3959, Protein of unknown function (DUF3959). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are approximately 260 amino acids in length.
Length = 242
Score = 29.5 bits (66), Expect = 2.7
Identities = 17/86 (19%), Positives = 35/86 (40%), Gaps = 8/86 (9%)
Query: 57 KRTKKKEKNKNKNRKEEKKKKKK--------RRTKKKEKNKNKSRKEEKKKEAEEEKKKT 108
R +K + +N N ++KKK+KK R K K K RK K+ + +
Sbjct: 151 HRKEKDDNKENINLFKQKKKRKKLSFKIRLPRLPKLKMKLFKFGRKPSNSKDPRKYEHNY 210
Query: 109 KNKEKNKNKSRKEEEEKKKEAEEKKK 134
+ + + ++ K+ + + +
Sbjct: 211 EENVPMYHMTEPIDQYKEPTTQGQTR 236
>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import
receptor (72 kDa mitochondrial outermembrane protein)
(mitochondrial import receptor for the ADP/ATP carrier)
(translocase of outermembrane tom70). [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 615
Score = 30.0 bits (67), Expect = 2.8
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Query: 70 RKEEKKKKKKRRTKKKEKNKNK-SRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKK- 127
RK +++++ K + KKE+ K K + KE + K E++ KN E +E
Sbjct: 57 RKGQQQRESKPKISKKERRKRKQAEKETEGKTEEKKSTAPKNAPVEPADELPEIDESSVA 116
Query: 128 --EAEEKKKKRTKKKEK 142
EE+KK K KEK
Sbjct: 117 NLSEEERKKYAAKLKEK 133
Score = 28.0 bits (62), Expect = 9.9
Identities = 19/80 (23%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 60 KKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKN-KNKS 118
+K ++ + K KK+++KR+ +KE K+ + + + E + + +
Sbjct: 57 RKGQQQRESKPKISKKERRKRKQAEKETEGKTEEKKSTAPKNAPVEPADELPEIDESSVA 116
Query: 119 RKEEEEKKKEAEEKKKKRTK 138
EEE+KK A + K+K K
Sbjct: 117 NLSEEERKKYAAKLKEKGNK 136
>gnl|CDD|222791 PHA00431, PHA00431, internal virion protein C.
Length = 746
Score = 29.8 bits (67), Expect = 2.8
Identities = 9/40 (22%), Positives = 20/40 (50%)
Query: 27 RKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNK 66
+K EE + K+ NK+ + + ++ R K+K+ +
Sbjct: 699 QKLAEEAREKALKDANKRAPIVAATQAREEVREKRKQTSG 738
>gnl|CDD|223616 COG0542, clpA, ATP-binding subunits of Clp protease and DnaK/DnaJ
chaperones [Posttranslational modification, protein
turnover, chaperones].
Length = 786
Score = 29.9 bits (68), Expect = 2.9
Identities = 16/63 (25%), Positives = 29/63 (46%)
Query: 118 SRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRK 177
+R E K E ++ ++ + E K +E++E+EKK + K K + E EK
Sbjct: 391 ARVRLEIDKPEELDELERELAQLEIEKEALEREQDEKEKKLIDEIIKLKEGRIPELEKEL 450
Query: 178 NEK 180
+
Sbjct: 451 EAE 453
>gnl|CDD|185616 PTZ00436, PTZ00436, 60S ribosomal protein L19-like protein;
Provisional.
Length = 357
Score = 29.5 bits (65), Expect = 2.9
Identities = 29/156 (18%), Positives = 67/156 (42%)
Query: 15 RTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEK 74
R K ++++ R +E + + + ++ + + K+ ++ + RK +
Sbjct: 52 RKPVKVHSRSRWRHMKEAKSMGRHEGAGRREGTREARMPSKELWMRRLRILRRLLRKYRE 111
Query: 75 KKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKK 134
+KK R ++ K K K+ E K KN++K + + ++ K+ + E+ +
Sbjct: 112 EKKIDRHIYRELYVKAKGNVFRNKRNLMEHIHKVKNEKKKERQLAEQLAAKRLKDEQHRH 171
Query: 135 KRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKK 170
K K++ + + K R+ E+ K+K KK
Sbjct: 172 KARKQELRKREKDRERARREDAAAAAAAKQKAAAKK 207
Score = 29.5 bits (65), Expect = 3.7
Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 7/105 (6%)
Query: 14 RRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKN-------K 66
RR +K + + K + E K K +NK + K K KKKE+ K
Sbjct: 103 RRLLRKYREEKKIDRHIYRELYVKAKGNVFRNKRNLMEHIHKVKNEKKKERQLAEQLAAK 162
Query: 67 NKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNK 111
++ + K +K+ +K+EK++ ++R+E+ A ++K K
Sbjct: 163 RLKDEQHRHKARKQELRKREKDRERARREDAAAAAAAKQKAAAKK 207
Score = 28.4 bits (62), Expect = 8.4
Identities = 28/113 (24%), Positives = 57/113 (50%), Gaps = 2/113 (1%)
Query: 27 RKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEK-KKKKKRRTKKK 85
RK EE+K + + K K K+ + K KN+ +KE + ++ + K
Sbjct: 107 RKYREEKKIDRHIYRELYVKAKGNVFRNKRNLMEHIHKVKNEKKKERQLAEQLAAKRLKD 166
Query: 86 EKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTK 138
E++++K+RK+E +K E+++++ + ++ + K++ KK A KK K
Sbjct: 167 EQHRHKARKQELRKR-EKDRERARREDAAAAAAAKQKAAAKKAAAPSGKKSAK 218
>gnl|CDD|183377 PRK11910, PRK11910, amidase; Provisional.
Length = 615
Score = 30.0 bits (67), Expect = 2.9
Identities = 22/94 (23%), Positives = 37/94 (39%)
Query: 31 EEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKN 90
E + KK+K K K ++ K KE + K+ + +R + ++
Sbjct: 34 ENKSAVSKKKKPTVKKEKPKQSSNNLTLGKNKENFHLEKGFGNKQLQVERIIDRIFQSSL 93
Query: 91 KSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEE 124
K+R E K K +KK K S+ E+ E
Sbjct: 94 KNRTEIKVKPKNNPQKKQNIKPVKPIPSKPEKPE 127
Score = 29.6 bits (66), Expect = 3.1
Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 4/92 (4%)
Query: 11 KKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNR 70
KKK+ T KKEK K S K KE K K+ + ++ + ++ KNR
Sbjct: 41 KKKKPTVKKEKPKQSSNNL----TLGKNKENFHLEKGFGNKQLQVERIIDRIFQSSLKNR 96
Query: 71 KEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAE 102
E K K K KK+ K + +K +
Sbjct: 97 TEIKVKPKNNPQKKQNIKPVKPIPSKPEKPED 128
Score = 29.2 bits (65), Expect = 4.1
Identities = 20/99 (20%), Positives = 34/99 (34%), Gaps = 4/99 (4%)
Query: 54 EKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEK 113
E K KK+K K K ++ K KE + K+ + E +
Sbjct: 34 ENKSAVSKKKKPTVKKEKPKQSSNNLTLGKNKENFHLEKGFGNKQLQVERIIDRIFQSSL 93
Query: 114 NKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEE 152
E + K + +KK+ K + +K K E+
Sbjct: 94 KNRT----EIKVKPKNNPQKKQNIKPVKPIPSKPEKPED 128
Score = 29.2 bits (65), Expect = 4.9
Identities = 23/111 (20%), Positives = 43/111 (38%), Gaps = 8/111 (7%)
Query: 40 EKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNK--------NK 91
++ ++NKS ++KK KK++ ++ N K K+ +K NK ++
Sbjct: 28 QQTTTSENKSAVSKKKKPTVKKEKPKQSSNNLTLGKNKENFHLEKGFGNKQLQVERIIDR 87
Query: 92 SRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEK 142
+ K E + K N +K +N + K E E K +
Sbjct: 88 IFQSSLKNRTEIKVKPKNNPQKKQNIKPVKPIPSKPEKPEDSPSPFYDKAR 138
Score = 28.8 bits (64), Expect = 6.4
Identities = 24/98 (24%), Positives = 39/98 (39%), Gaps = 6/98 (6%)
Query: 74 KKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNK------NKSRKEEEEKKK 127
++ K K + K+EK K++ KNKE NK + E +
Sbjct: 28 QQTTTSENKSAVSKKKKPTVKKEKPKQSSNNLTLGKNKENFHLEKGFGNKQLQVERIIDR 87
Query: 128 EAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKK 165
+ K RT+ K K KN +K++ + K K +K
Sbjct: 88 IFQSSLKNRTEIKVKPKNNPQKKQNIKPVKPIPSKPEK 125
>gnl|CDD|221275 pfam11861, DUF3381, Domain of unknown function (DUF3381). This
domain is functionally uncharacterized. This domain is
found in eukaryotes. This presumed domain is typically
between 156 to 174 amino acids in length. This domain is
found associated with pfam07780, pfam01728.
Length = 154
Score = 28.8 bits (65), Expect = 2.9
Identities = 16/55 (29%), Positives = 32/55 (58%)
Query: 94 KEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSR 148
K+EK++E EEE + + E+ + E+E K + E++++ K+KE K + +
Sbjct: 98 KKEKEEEEEEEVEVEELDEEEQIDELLEKELAKLKREKRRENERKQKEILKEQMK 152
Score = 28.0 bits (63), Expect = 6.2
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 105 KKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKK 164
KK K K + K RK KKE EE++++ + +E EEE+ ++ +K+ K
Sbjct: 77 KKDFKKLLKWRKKVRKLLGLDKKEKEEEEEEEVEVEEL------DEEEQIDELLEKELAK 130
Query: 165 KKRTKKKEEEKRKNEKA 181
KR K++E E+++ E
Sbjct: 131 LKREKRRENERKQKEIL 147
>gnl|CDD|203489 pfam06644, ATP11, ATP11 protein. This family consists of several
eukaryotic ATP11 proteins. In Saccharomyces cerevisiae,
expression of functional F1-ATPase requires two proteins
encoded by the ATP11 and ATP12 genes. Atp11p is a
molecular chaperone of the mitochondrial matrix that
participates in the biogenesis pathway to form F1, the
catalytic unit of the ATP synthase.
Length = 250
Score = 29.3 bits (66), Expect = 3.0
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Query: 103 EEKKKTKNKEKNKNKSRKEEEEKKKEAEEK--KKKRTKKKEKNKNKSRKEEEEEEKKKKK 160
EK ++K +K K + E KK ++K KK+ + KK + + + K K
Sbjct: 1 YEKYRSKLLQKAKESGLEFIERLKKALKDKIEKKEFSAKKPPTGPSKQASKFKTLKPPKP 60
Query: 161 KKKKKKRTK 169
KKK K
Sbjct: 61 ADKKKPFDK 69
>gnl|CDD|219882 pfam08524, rRNA_processing, rRNA processing. This is a family of
proteins that are involved in rRNA processing. In a
localisation study they were found to localise to the
nucleus and nucleolus. The family also includes other
metazoa members from plants to mammals where the protein
has been named BR22 and is associated with TTF-1,
thyroid transcription factor 1. In the lungs, the family
binds TTF-1 to form a complex which influences the
expression of the key lung surfactant protein-B (SP-B)
and -C (SP-C), the small hydrophobic surfactant proteins
that maintain surface tension in alveoli.
Length = 150
Score = 28.7 bits (64), Expect = 3.0
Identities = 33/121 (27%), Positives = 71/121 (58%)
Query: 60 KKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSR 119
+ ++KN K +E K K+ +R KK + K + K +K+ +K++ K+ +K
Sbjct: 6 QNQKKNGKKFTREYKVKEIQRNLTKKARLKKEYLKLLEKEGYAVPEKESAEKQVKSSKED 65
Query: 120 KEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNE 179
++ E+KKK E+K+ + +K+E+ + + K ++E EK + KKK+K+R +++++ +K +
Sbjct: 66 RKFEKKKKLDEKKEIAKQRKREQREKELAKRQKELEKIELSKKKQKERERRRKKLTKKTK 125
Query: 180 K 180
Sbjct: 126 S 126
>gnl|CDD|218427 pfam05093, CIAPIN1, Cytokine-induced anti-apoptosis inhibitor 1,
Fe-S biogenesis. Anamorsin, subsequently named CIAPIN1
for cytokine-induced anti-apoptosis inhibitor 1, in
humans is the homologue of yeast Dre2, a conserved
soluble eukaryotic Fe-S cluster protein, that functions
in cytosolic Fe-S protein biogenesis. It is found in
both the cytoplasm and in the mitochondrial
intermembrane space (IMS). CIAPIN1 is found to be
up-regulated in hepatocellular cancer, is considered to
be a downstream effector of the receptor tyrosine
kinase-Ras signalling pathway, and is essential in mouse
definitive haematopoiesis. Dre2 has been found to
interact with the yeast reductase Tah18, forming a tight
cytosolic complex implicated in the response to high
levels of oxidative stress.
Length = 97
Score = 28.1 bits (63), Expect = 3.1
Identities = 13/53 (24%), Positives = 21/53 (39%)
Query: 128 EAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEK 180
+ +K KN EEEE+EKK K +++K E + +
Sbjct: 12 RKCGPGPGKKRKACKNCTCGLAEEEEQEKKDKSAAQQQKVEDDLAEITVEGKT 64
>gnl|CDD|227577 COG5252, COG5252, Uncharacterized conserved protein, contains
CCCH-type Zn-finger protein [General function prediction
only].
Length = 299
Score = 29.7 bits (66), Expect = 3.2
Identities = 25/125 (20%), Positives = 55/125 (44%)
Query: 17 KKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKK 76
KK K + +S K+ + R + ++K KNK+R + + + + N + ++++K
Sbjct: 4 KKMAKKQQESGKKATRDMRKELEDKTFGLKNKNRSTKVQAIIKQIETLNLKEQLEKKEKM 63
Query: 77 KKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKR 136
+ + + ++ EK ++ + K KT K + +EE +K E +
Sbjct: 64 RMEEKRREPEKQVIRAGVDPKTVVCALFLNKTCAKGDACKFAHGKEEARKTEKPDLYSDV 123
Query: 137 TKKKE 141
K+E
Sbjct: 124 RDKEE 128
>gnl|CDD|202427 pfam02841, GBP_C, Guanylate-binding protein, C-terminal domain.
Transcription of the anti-viral guanylate-binding
protein (GBP) is induced by interferon-gamma during
macrophage induction. This family contains GBP1 and
GPB2, both GTPases capable of binding GTP, GDP and GMP.
Length = 297
Score = 29.6 bits (67), Expect = 3.2
Identities = 22/86 (25%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 96 EKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNK-NKSRKEEEEE 154
EK EAE K + E+ + +++EEE+ EA+E+ + K+ K R++ E
Sbjct: 203 EKAIEAERAKAEAAEAEQELLREKQKEEEQMMEAQERSYQEHVKQLIEKMEAEREKLLAE 262
Query: 155 EKKKKKKKKKKKRTKKKEEEKRKNEK 180
+++ + K +++ KE K + E
Sbjct: 263 QERMLEHKLQEQEELLKEGFKTEAES 288
Score = 28.8 bits (65), Expect = 5.0
Identities = 17/92 (18%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Query: 12 KKRRTKKKEKNKNKS-RKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNR 70
K + + E+ K ++ E+E + +K+E+ + +E K+ +K E + K
Sbjct: 201 AKEKAIEAERAKAEAAEAEQELLREKQKEEEQMMEAQERSYQEHVKQLIEKMEAEREKLL 260
Query: 71 KEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAE 102
E+++ + + +++E K + E + + E
Sbjct: 261 AEQERMLEHKLQEQEELLKEGFKTEAESLQKE 292
Score = 28.0 bits (63), Expect = 9.9
Identities = 21/92 (22%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
Query: 72 EEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEE--EKKKTKNKEKNKNKSRKEEEEKKKEA 129
++K + R K + + EK+KE E+ E ++ +E K K E E++K
Sbjct: 201 AKEKAIEAERAKAEAAEAEQELLREKQKEEEQMMEAQERSYQEHVKQLIEKMEAEREKLL 260
Query: 130 EEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKK 161
E+++ + K + + + KE + E + +K
Sbjct: 261 AEQERM-LEHKLQEQEELLKEGFKTEAESLQK 291
>gnl|CDD|184860 PRK14858, tatA, twin arginine translocase protein A; Provisional.
Length = 108
Score = 27.9 bits (62), Expect = 3.4
Identities = 14/58 (24%), Positives = 26/58 (44%)
Query: 121 EEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKN 178
+EE + E +EK +K + K++ + K EE++ K K + K + K
Sbjct: 51 QEESRTAEEKEKAEKLAETKKEAEAPEAKAEEDQAPKPKGAGEPPATVASKAGDGAKA 108
>gnl|CDD|218771 pfam05835, Synaphin, Synaphin protein. This family consists of
several eukaryotic synaphin 1 and 2 proteins.
Synaphin/complexin is a cytosolic protein that
preferentially binds to syntaxin within the SNARE
complex. Synaphin promotes SNAREs to form precomplexes
that oligomerise into higher order structures. A peptide
from the central, syntaxin binding domain of synaphin
competitively inhibits these two proteins from
interacting and prevents SNARE complexes from
oligomerising. It is thought that oligomerisation of
SNARE complexes into a higher order structure creates a
SNARE scaffold for efficient, regulated fusion of
synaptic vesicles. Synaphin promotes neuronal exocytosis
by promoting interaction between the complementary
syntaxin and synaptobrevin transmembrane regions that
reside in opposing membranes prior to fusion.
Length = 139
Score = 28.7 bits (64), Expect = 3.4
Identities = 26/103 (25%), Positives = 49/103 (47%)
Query: 85 KEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNK 144
KE ++S EE+ +E +E ++ + + K K++ +EE E ++ K KK+E +
Sbjct: 23 KEDEGDESDAEEEDEEIQEALREAEEERKAKHRKMEEEREVMRQGIRDKYGIKKKEEDEE 82
Query: 145 NKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKAVRLTKL 187
EEEE + +KKK ++ + EE + E+
Sbjct: 83 EPQAAAEEEEGRLGRKKKTPEELAAEAGEEDEEEEEKSGFPTQ 125
>gnl|CDD|215124 PLN02195, PLN02195, cellulose synthase A.
Length = 977
Score = 29.6 bits (66), Expect = 3.5
Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
Query: 68 KNRKE---EKKKKKKRRTKKKEKNKNKSRKEEKKKE 100
KNR E +KK KKK+ KKKE +K + E++ +E
Sbjct: 115 KNRVESWKDKKNKKKKSAKKKEAHKAQIPPEQQMEE 150
Score = 29.6 bits (66), Expect = 3.6
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 120 KEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEK 156
K E K+ + KKKK KKKE +K + E++ EEK
Sbjct: 115 KNRVESWKDKKNKKKKSAKKKEAHKAQIPPEQQMEEK 151
Score = 28.4 bits (63), Expect = 8.3
Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Query: 2 KNKKE---EKKKKKKRRTKKKEKNKNKSRKEEEEEKR 35
KN+ E +KK KKK+ KKKE +K + E++ E++
Sbjct: 115 KNRVESWKDKKNKKKKSAKKKEAHKAQIPPEQQMEEK 151
>gnl|CDD|219405 pfam07418, PCEMA1, Acidic phosphoprotein precursor PCEMA1. This
family consists of several acidic phosphoprotein
precursor PCEMA1 sequences which appear to be found
exclusively in Plasmodium chabaudi. PCEMA1 is an antigen
that is associated with the membrane of the infected
erythrocyte throughout the entire intraerythrocytic
cycle. The exact function of this family is unclear.
Length = 286
Score = 29.5 bits (66), Expect = 3.5
Identities = 19/108 (17%), Positives = 43/108 (39%)
Query: 31 EEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKN 90
E++ T ++ + S E + T +N+ +E + + K E +
Sbjct: 179 EDDASTLHEDDELDEEVTSYLNELDDEVTSYFNDGENEENDDELEAEVISYLKDGENDNE 238
Query: 91 KSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTK 138
K ++ + K N+ + +++S E EE+ E +E + K +
Sbjct: 239 VKEKIRREYREWKGDKANTNETEIEDESEDEYEEEAGEEQENEDKGEE 286
>gnl|CDD|241486 cd13332, FERM_C_JAK1, Janus kinase 1 FERM domain C-lobe. JAK1 is a
tyrosine kinase protein essential in signaling type I
and type II cytokines. It interacts with the gamma chain
of type I cytokine receptors to elicit signals from the
IL-2 receptor family, the IL-4 receptor family, the
gp130 receptor family, ciliary neurotrophic factor
receptor (CNTF-R), neurotrophin-1 receptor (NNT-1R) and
Leptin-R). It also is involved in transducing a signal
by type I (IFN-alpha/beta) and type II (IFN-gamma)
interferons, and members of the IL-10 family via type II
cytokine receptors. JAK (also called Just Another
Kinase) is a family of intracellular, non-receptor
tyrosine kinases that transduce cytokine-mediated
signals via the JAK-STAT pathway. The JAK family in
mammals consists of 4 members: JAK1, JAK2, JAK3 and
TYK2. JAKs are composed of seven JAK homology (JH)
domains (JH1-JH7) . The C-terminal JH1 domain is the
main catalytic domain, followed by JH2, which is often
referred to as a pseudokinase domain, followed by
JH3-JH4 which is homologous to the SH2 domain, and
lastly JH5-JH7 which is a FERM domain. Named after
Janus, the two-faced Roman god of doorways, JAKs possess
two near-identical phosphate-transferring domains; one
which displays the kinase activity (JH1), while the
other negatively regulates the kinase activity of the
first (JH2). The FERM domain has a cloverleaf tripart
structure (FERM_N, FERM_M, FERM_C/N, alpha-, and
C-lobe/A-lobe,A-lobe, B-lobe, C-lobe/F1, F2, F3). The
C-lobe/F3 within the FERM domain is part of the PH
domain family. The FERM domain is found in the
cytoskeletal-associated proteins such as ezrin, moesin,
radixin, 4.1R, and merlin. These proteins provide a link
between the membrane and cytoskeleton and are involved
in signal transduction pathways. The FERM domain is also
found in protein tyrosine phosphatases (PTPs) , the
tyrosine kinases FAK and JAK, in addition to other
proteins involved in signaling. This domain is
structurally similar to the PH and PTB domains and
consequently is capable of binding to both peptides and
phospholipids at different sites.
Length = 198
Score = 29.0 bits (65), Expect = 3.6
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 154 EEKKKKKKKKKKKRTKKKEEEKRKNE 179
E+KKK K KK K + KK E++K+ E
Sbjct: 90 EKKKKGKSKKNKLKGKKDEDKKKARE 115
Score = 27.9 bits (62), Expect = 8.9
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 70 RKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEE 104
RK +K++ K +KNK K +K+E KK+A E
Sbjct: 82 RKPATTAVEKKKKGKSKKNKLKGKKDEDKKKAREG 116
Score = 27.5 bits (61), Expect = 9.6
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 56 KKRTKKKEKNKNKNRKEEKKKKKK 79
KK+ K +KNK K +K+E KKK +
Sbjct: 91 KKKKGKSKKNKLKGKKDEDKKKAR 114
Score = 27.5 bits (61), Expect = 9.9
Identities = 14/21 (66%), Positives = 18/21 (85%)
Query: 37 KKKEKNKKNKNKSRKEEEKKK 57
KKK K+KKNK K +K+E+KKK
Sbjct: 92 KKKGKSKKNKLKGKKDEDKKK 112
>gnl|CDD|218517 pfam05236, TAF4, Transcription initiation factor TFIID component
TAF4 family. This region of similarity is found in
Transcription initiation factor TFIID component TAF4.
Length = 255
Score = 29.3 bits (66), Expect = 3.6
Identities = 16/90 (17%), Positives = 37/90 (41%), Gaps = 15/90 (16%)
Query: 21 KNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKR 80
+++ K + + + + + +KEEE+++ +++E + K+K
Sbjct: 93 RHRRDGIKSDPNYEIRSDVRRQLRFLAQKQKEEEERRVERRRELGLEDPEQLRLKQKA-- 150
Query: 81 RTKKKEKNKNKSRKEEKKKEAEEEKKKTKN 110
KEE+K E+EE + + N
Sbjct: 151 -------------KEEQKAESEETRHRAAN 167
Score = 28.9 bits (65), Expect = 4.6
Identities = 12/47 (25%), Positives = 29/47 (61%)
Query: 68 KNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKN 114
K ++EE+++ ++RR E + K++ K+E + E ++T+++ N
Sbjct: 121 KQKEEEERRVERRRELGLEDPEQLRLKQKAKEEQKAESEETRHRAAN 167
>gnl|CDD|233119 TIGR00763, lon, ATP-dependent protease La. This protein is induced
by heat shock and other stresses in E. coli, B.
subtilis, and other species. The yeast member,
designated PIM1, is located in the mitochondrial matrix,
required for mitochondrial function, and also induced by
heat shock [Protein fate, Degradation of proteins,
peptides, and glycopeptides].
Length = 775
Score = 29.6 bits (67), Expect = 3.7
Identities = 21/80 (26%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 102 EEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKK 161
++E + K + K K ++ E+ ++E +++ + KKE K K+E E+ K+K ++
Sbjct: 199 KKELELLKLQNKITKKVEEKMEKTQREYYLREQLKAIKKELGIEKDDKDELEKLKEKLEE 258
Query: 162 KKKKKRTKKK-EEEKRKNEK 180
K + KK E+E K
Sbjct: 259 LKLPEEVKKVIEKELTKLSL 278
>gnl|CDD|219564 pfam07771, TSGP1, Tick salivary peptide group 1. This contains a
group of peptides derived from a salivary gland cDNA
library of the tick Ixodes scapularis. Also present are
peptides from a related tick species, Ixodes ricinus.
They are characterized by a putative signal peptide
indicative of secretion and conserved cysteine residues.
Length = 120
Score = 28.3 bits (63), Expect = 3.7
Identities = 15/41 (36%), Positives = 19/41 (46%)
Query: 135 KRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEK 175
T E + E E+ KKKKKK KK + KK +K
Sbjct: 79 LTTSSGEPSHPDDHPPEPTEKPKKKKKKSKKTKKPKKSSKK 119
Score = 27.9 bits (62), Expect = 4.4
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 151 EEEEEKKKKKKKKKKKRTKKKEEEKRK 177
E EK KKKKKK KK K K+ K+
Sbjct: 94 PEPTEKPKKKKKKSKKTKKPKKSSKKD 120
Score = 27.5 bits (61), Expect = 6.8
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 152 EEEEKKKKKKKKKKKRTKKKEEEKRKN 178
E +K KKKKKK K+TKK ++ +K+
Sbjct: 94 PEPTEKPKKKKKKSKKTKKPKKSSKKD 120
>gnl|CDD|216568 pfam01555, N6_N4_Mtase, DNA methylase. Members of this family are
DNA methylases. The family contains both N-4
cytosine-specific DNA methylases and N-6
Adenine-specific DNA methylases.
Length = 219
Score = 28.9 bits (65), Expect = 3.7
Identities = 10/54 (18%), Positives = 17/54 (31%)
Query: 74 KKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKK 127
K KK K + + KK+ E K + + + E+E
Sbjct: 106 KTKKYYTFNYDAIKVPYDEKDKLKKRGDSEPNGKPIGDVWDFPRVQPSEKESGG 159
>gnl|CDD|218391 pfam05029, TIMELESS_C, Timeless protein C terminal region. The
timeless (tim) gene is essential for circadian function
in Drosophila. Putative homologues of Drosophila tim
have been identified in both mice and humans (mTim and
hTIM, respectively). Mammalian TIM is not the true
orthologue of Drosophila TIM, but is the likely
orthologue of a fly gene, timeout (also called tim-2).
mTim has been shown to be essential for embryonic
development, but does not have substantiated circadian
function. Some family members contain a SANT domain in
this region.
Length = 507
Score = 29.3 bits (65), Expect = 3.7
Identities = 17/87 (19%), Positives = 36/87 (41%), Gaps = 2/87 (2%)
Query: 88 NKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKS 147
+ + R+ EEE+ + + K+ + E E + + ++R K +
Sbjct: 367 SSTQLRRRAASLSGEEEEPEDELKDDVDGEQADESEHETLALRKNARQR--KAGLASPEE 424
Query: 148 RKEEEEEEKKKKKKKKKKKRTKKKEEE 174
EEE+K KKK+ ++ K++
Sbjct: 425 EALGEEEQKAPPKKKQLNQKNKQQTGS 451
>gnl|CDD|219355 pfam07267, Nucleo_P87, Nucleopolyhedrovirus capsid protein P87.
This family consists of several Nucleopolyhedrovirus
capsid protein P87 sequences. P87 is expressed late in
infection and concentrated in infected cell nuclei.
Length = 606
Score = 29.5 bits (66), Expect = 3.7
Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKK-KRTK 60
+ E R+ K++ +E+E + + E + + + K R+EE+K R K
Sbjct: 344 DSDSEASDSGPTRKRKRRRVPPLPEYSSDEDEDDSDEDEVDYEKERKRRREEDKNFLRLK 403
Query: 61 KKEKNKNKNRKEEKKK 76
E +K E +K
Sbjct: 404 ALELSKYAGVNERMEK 419
>gnl|CDD|240433 PTZ00482, PTZ00482, membrane-attack complex/perforin (MACPF)
Superfamily; Provisional.
Length = 844
Score = 29.4 bits (66), Expect = 3.9
Identities = 20/117 (17%), Positives = 42/117 (35%), Gaps = 3/117 (2%)
Query: 54 EKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEK 113
++ + + N N ++ + + +++ N S E K EE+K +T+N K
Sbjct: 125 DRDEDADTQANNDQTNDFDQDDSSNSQTDQGLKQSVNLSSAE---KLIEEKKGQTENTFK 181
Query: 114 NKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKK 170
N EE K+ + K + + + E ++ K + K
Sbjct: 182 FYNFGNDGEEAAAKDGGKSKSSDPGPLNDSDGQGDDGDPESAEEDKAASNTRAAYTK 238
>gnl|CDD|184724 PRK14520, rpsP, 30S ribosomal protein S16; Provisional.
Length = 155
Score = 28.5 bits (64), Expect = 3.9
Identities = 14/76 (18%), Positives = 21/76 (27%)
Query: 106 KKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKK 165
K T + +K K E K E + K + + E KKKK +
Sbjct: 75 KITGDWQKFKGLPGAEGTLKVAEPKPSKLELFNAALAEADGGPTAEATTPKKKKAAAEAA 134
Query: 166 KRTKKKEEEKRKNEKA 181
+ A
Sbjct: 135 AAEAAAPAAEAAAAAA 150
>gnl|CDD|225381 COG2825, HlpA, Outer membrane protein [Cell envelope biogenesis,
outer membrane].
Length = 170
Score = 28.5 bits (64), Expect = 3.9
Identities = 18/83 (21%), Positives = 40/83 (48%)
Query: 93 RKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEE 152
+ ++ + E E KK + + + K K +E K ++ + + + K + + K K
Sbjct: 41 QAKKVSADLESEFKKRQKELQKMQKELKAKEAKLQDDGKMEALSDRAKAEAEIKKEKLVN 100
Query: 153 EEEKKKKKKKKKKKRTKKKEEEK 175
KK+++ +K R + +EE+K
Sbjct: 101 AFNKKQQEYEKDLNRREAEEEQK 123
Score = 27.7 bits (62), Expect = 8.0
Identities = 24/90 (26%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 83 KKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEK 142
+ +K + + +K +K+ +A+E K + K + + K E E KKE K++E
Sbjct: 51 SEFKKRQKELQKMQKELKAKEAKLQDDGKMEALSDRAKAEAEIKKEKLV-NAFNKKQQEY 109
Query: 143 NKNKSRKEEEEEEKKKKKKKKKKKRTKKKE 172
K+ +R+E EEE+K +K ++ + +K
Sbjct: 110 EKDLNRREAEEEQKLLEKIQRAIESVAEKG 139
Score = 27.7 bits (62), Expect = 8.6
Identities = 17/95 (17%), Positives = 42/95 (44%)
Query: 49 SRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKT 108
S E + K+ +K+ + K K ++ K + + ++ K+ E KK++ K
Sbjct: 46 SADLESEFKKRQKELQKMQKELKAKEAKLQDDGKMEALSDRAKAEAEIKKEKLVNAFNKK 105
Query: 109 KNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKN 143
+ + + R+ EEE+K + ++ + ++
Sbjct: 106 QQEYEKDLNRREAEEEQKLLEKIQRAIESVAEKGG 140
>gnl|CDD|240323 PTZ00233, PTZ00233, variable surface protein Vir18; Provisional.
Length = 509
Score = 29.6 bits (66), Expect = 3.9
Identities = 20/101 (19%), Positives = 41/101 (40%), Gaps = 7/101 (6%)
Query: 3 NKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKK 62
N E+ K K + K N ++ + +E K K K + ++
Sbjct: 81 NNDEKIKNFKSKCNNKGTCNNGAFPAKKPPLIKPTTQEPCKGGKGC------KTETPQRV 134
Query: 63 E-KNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAE 102
+ K+++K R K K +E+++N++ +E KE+
Sbjct: 135 DTKSQSKLRPVPSKAKSLEIKDPQEQSQNQADAQESNKESV 175
>gnl|CDD|185611 PTZ00428, PTZ00428, 60S ribosomal protein L4; Provisional.
Length = 381
Score = 29.3 bits (66), Expect = 4.0
Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 19/74 (25%)
Query: 132 KKKKRTKKKEKNKN-------------------KSRKEEEEEEKKKKKKKKKKKRTKKKE 172
KKK K++ + KN K +E+ K +K K +R +KK
Sbjct: 304 AKKKPAKRRVQKKNPLKNRRVRLRLNPAAKKLRKLAVLAQEKATAKGAQKVKNRRARKKA 363
Query: 173 EEKRKNEKAVRLTK 186
++ R + A L K
Sbjct: 364 KKARLAKVAKALYK 377
>gnl|CDD|234402 TIGR03928, T7_EssCb_Firm, type VII secretion protein EssC,
C-terminal domain. This model describes the C-terminal
domain, or longer subunit, of the Firmicutes type VII
secretion protein EssC. This protein (homologous to EccC
in Actinobacteria) and the WXG100 target proteins are
the only homologous parts of type VII secretion between
Firmicutes and Actinobacteria [Protein fate, Protein and
peptide secretion and trafficking].
Length = 1296
Score = 29.6 bits (67), Expect = 4.0
Identities = 10/55 (18%), Positives = 20/55 (36%)
Query: 68 KNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEE 122
+ +K+ KK +KR + K ++ + E + N + K E
Sbjct: 84 REKKKYKKDVEKRNRSYRLYLDKKRKELQALSEKQRHVLHYHNPSVEELKEMVEN 138
Score = 28.8 bits (65), Expect = 6.4
Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 2 KNKKEEKKKKKKRRTKKKE--KNKNKSRKEEEEEKR 35
+ KK+ KK +KR + K K + E++R
Sbjct: 84 REKKKYKKDVEKRNRSYRLYLDKKRKELQALSEKQR 119
>gnl|CDD|214922 smart00935, OmpH, Outer membrane protein (OmpH-like). This family
includes outer membrane proteins such as OmpH among
others. Skp (OmpH) has been characterized as a molecular
chaperone that interacts with unfolded proteins as they
emerge in the periplasm from the Sec translocation
machinery.
Length = 140
Score = 28.3 bits (64), Expect = 4.1
Identities = 22/80 (27%), Positives = 46/80 (57%)
Query: 100 EAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKK 159
E+ K K EK K + E E+ +KE ++ K+K K +R+++E+E +KK
Sbjct: 12 ESPAGKAAQKQLEKEFKKRQAELEKLEKELQKLKEKLQKDAATLSEAAREKKEKELQKKV 71
Query: 160 KKKKKKKRTKKKEEEKRKNE 179
++ ++K++ +++ +KR+ E
Sbjct: 72 QEFQRKQQKLQQDLQKRQQE 91
Score = 27.9 bits (63), Expect = 5.6
Identities = 17/76 (22%), Positives = 43/76 (56%)
Query: 83 KKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEK 142
+K+ + + K R+ E +K +E +K + +K+ + EKK++ +KK + ++K++
Sbjct: 20 QKQLEKEFKKRQAELEKLEKELQKLKEKLQKDAATLSEAAREKKEKELQKKVQEFQRKQQ 79
Query: 143 NKNKSRKEEEEEEKKK 158
+ ++ ++EE +K
Sbjct: 80 KLQQDLQKRQQEELQK 95
>gnl|CDD|225123 COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC
component [Carbohydrate transport and metabolism].
Length = 472
Score = 29.2 bits (66), Expect = 4.1
Identities = 7/45 (15%), Positives = 17/45 (37%), Gaps = 3/45 (6%)
Query: 57 KRTKKKEKN---KNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKK 98
K +K + ++ + +E K + K ++ + KK
Sbjct: 336 KTSKTESEDDLEAATAKMKEMKGESKGQSSALAADVKNDLSNVKK 380
>gnl|CDD|236272 PRK08475, PRK08475, F0F1 ATP synthase subunit B; Validated.
Length = 167
Score = 28.4 bits (64), Expect = 4.2
Identities = 29/93 (31%), Positives = 46/93 (49%), Gaps = 14/93 (15%)
Query: 83 KKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAE------------ 130
K KN KSR + K EE ++K K ++ K + K+ EE K++AE
Sbjct: 44 AKPLKNFYKSRINKISKRLEEIQEKLKESKEKKEDALKKLEEAKEKAELIVETAKKEAYI 103
Query: 131 --EKKKKRTKKKEKNKNKSRKEEEEEEKKKKKK 161
+K +K+TK +N KS +E E E +K ++
Sbjct: 104 LTQKIEKQTKDDIENLIKSFEELMEFEVRKMER 136
>gnl|CDD|233034 TIGR00584, mug, mismatch-specific thymine-DNA glycosylate (mug).
All proteins in this family for whcih functions are
known are G-T or G-U mismatch glycosylases that function
in base excision repair. This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University). Used 2pf model [DNA metabolism,
DNA replication, recombination, and repair].
Length = 328
Score = 29.3 bits (65), Expect = 4.2
Identities = 23/98 (23%), Positives = 40/98 (40%)
Query: 77 KKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKR 136
KK++R+ +EE + + ++E K + RK + E KK
Sbjct: 20 KKQQRSADAPNMALVEEQEETSGVPAKAPTQEPSEEAPKFRKRKPRSNEPYRPVEPKKPS 79
Query: 137 TKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEE 174
KK KS++++E+ K K K+K + E E
Sbjct: 80 DSKKSGKSTKSKEKQEKITDKFKVKRKVDRFNGVSEAE 117
>gnl|CDD|145736 pfam02741, FTR_C, FTR, proximal lobe. The FTR
(Formylmethanofuran--tetrahydromethanopterin
formyltransferase) enzyme EC:2.3.1.101 is involved in
archaebacteria in the formation of methane from carbon
dioxide. C-terminal proximal lobe of alpha+beta
ferredoxin-like fold. SCOP reports fold duplication with
N-terminal distal lobe.
Length = 150
Score = 28.3 bits (64), Expect = 4.2
Identities = 9/28 (32%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 251 GFNFWLFADDLKVALRVGGQREVDSMQS 278
G NF + A+D AL + VD+++
Sbjct: 18 GGNFLILAEDQMAALA-AAEAAVDAIRE 44
>gnl|CDD|240227 PTZ00009, PTZ00009, heat shock 70 kDa protein; Provisional.
Length = 653
Score = 29.4 bits (66), Expect = 4.2
Identities = 29/114 (25%), Positives = 49/114 (42%), Gaps = 19/114 (16%)
Query: 32 EEKRTKKKEKNKKNKNKSR-KEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKN-- 88
E+K T K K +K R + + + + EK K E++ +++ K +N
Sbjct: 493 EDKSTGKSNKITITNDKGRLSKADIDRMVNEAEKYKA----EDEANRERVEAKNGLENYC 548
Query: 89 ---KNKSRKEEKKKEAEEEKKKTKNK---------EKNKNKSRKEEEEKKKEAE 130
KN + E+ K + + K T K EKN+ ++E E K+KE E
Sbjct: 549 YSMKNTLQDEKVKGKLSDSDKATIEKAIDEALEWLEKNQLAEKEEFEHKQKEVE 602
>gnl|CDD|223630 COG0556, UvrB, Helicase subunit of the DNA excision repair complex
[DNA replication, recombination, and repair].
Length = 663
Score = 29.5 bits (67), Expect = 4.3
Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 7/78 (8%)
Query: 52 EEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNK 111
+E +++R + N E+ + KKK ++ EE + +A+ EKK +K
Sbjct: 566 DETERRREIQMAYN-------EEHGITPQTIKKKIRDILDGEYEEDEYKAKIEKKASKMS 618
Query: 112 EKNKNKSRKEEEEKKKEA 129
+K K K+ E++ KEA
Sbjct: 619 KKELEKLIKKLEKEMKEA 636
>gnl|CDD|197876 smart00792, Agouti, Agouti protein. The agouti protein regulates
pigmentation in the mouse hair follicle producing a
black hair with a subapical yellow band. A highly
homologous protein agouti signal protein (ASIP) is
present in humans and is expressed at highest levels in
adipose tissue where it may play a role in energy
homeostasis and possibly human pigmentation.
Length = 124
Score = 27.9 bits (62), Expect = 4.3
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 146 KSRK-EEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKAVRL 184
K +K EE EKK +KK+KK T E R + VRL
Sbjct: 53 KPKKISAEEAEKKLLQKKEKKALTNVLRPEPRSPRRCVRL 92
>gnl|CDD|215349 PLN02647, PLN02647, acyl-CoA thioesterase.
Length = 437
Score = 29.4 bits (66), Expect = 4.4
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 122 EEEKK--KEAEEKKKKRTKKKEKNKNKSRKEEEE 153
EEEK +EAE + K R KK+ + K + E E
Sbjct: 227 EEEKLLFEEAEARNKLRKKKRGEQKREFENGEAE 260
>gnl|CDD|237869 PRK14962, PRK14962, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 472
Score = 29.3 bits (66), Expect = 4.6
Identities = 12/50 (24%), Positives = 29/50 (58%)
Query: 125 KKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEE 174
+ + ++ ++K N N +KE+++EE K K++K++ +K+ +E
Sbjct: 332 TRFSSPNVQENDVEEKNDNSNVQQKEKKKEESKAKEEKQEDIEFEKRFKE 381
Score = 29.0 bits (65), Expect = 4.7
Identities = 11/45 (24%), Positives = 25/45 (55%)
Query: 121 EEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKK 165
++ E+ ++KEK K +S+ +EE++E + +K+ K+
Sbjct: 337 PNVQENDVEEKNDNSNVQQKEKKKEESKAKEEKQEDIEFEKRFKE 381
>gnl|CDD|237631 PRK14162, PRK14162, heat shock protein GrpE; Provisional.
Length = 194
Score = 28.6 bits (64), Expect = 4.6
Identities = 17/64 (26%), Positives = 31/64 (48%)
Query: 106 KKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKK 165
K+ EK+ + +E KKEA+E K+ ++K+ KE + + K K + K
Sbjct: 3 KEEFPSEKDLPQEETTDEAPKKEAKEAPKEEDQEKQNPVEDLEKEIADLKAKNKDLEDKY 62
Query: 166 KRTK 169
R++
Sbjct: 63 LRSQ 66
Score = 28.3 bits (63), Expect = 5.4
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 91 KSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRK 149
+ EK EE + KE K ++E++EK+ E+ +K+ K KNK+ K
Sbjct: 4 EEFPSEKDLPQEETTDEAPKKEA-KEAPKEEDQEKQNPVEDLEKEIADLKAKNKDLEDK 61
>gnl|CDD|233048 TIGR00605, rad4, DNA repair protein rad4. All proteins in this
family for which functions are known are involved in
targeting nucleotide excision repair to specific regions
of the genome.This family is based on the phylogenomic
analysis of JA Eisen (1999, Ph.D. Thesis, Stanford
University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 713
Score = 29.1 bits (65), Expect = 4.7
Identities = 19/103 (18%), Positives = 35/103 (33%), Gaps = 4/103 (3%)
Query: 9 KKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNK 68
K K + RK EE R+ + + + + E +K +K K K
Sbjct: 177 KLSNLIPEKVRLLLHPSVRKSEELPSRSLRGLRKPLVEKLKKCMETWQKGLRKTTKGLLK 236
Query: 69 NRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNK 111
+ R+K +E K+ +RK +K ++
Sbjct: 237 LLNGGRYS----RSKWEEIEKSSNRKLGGRKYRTLKRGSILEN 275
>gnl|CDD|227923 COG5636, COG5636, Uncharacterized conserved protein, contains
Zn-ribbon-like motif [Function unknown].
Length = 284
Score = 29.0 bits (64), Expect = 4.7
Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 3/118 (2%)
Query: 60 KKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSR 119
K+ + K + K + K R ++K + RK + K +K T + +++
Sbjct: 111 KETDSFKPPSFKMTTEPKVYRVVDDLMEDKEELRKLLRSKAQYMMRKDTDPRTIMEDELL 170
Query: 120 KEEEEKKK-EAEEKKKKRTKKKEKNKNKS--RKEEEEEEKKKKKKKKKKKRTKKKEEE 174
E+ E K + E +TKKK K+ + KEEEE E + ++ K K T+ + E
Sbjct: 171 DEDSEDKAIQRSECPPSKTKKKRACKDCTCGLKEEEENEIVRTRQDKVVKFTEDELTE 228
>gnl|CDD|233037 TIGR00592, pol2, DNA polymerase (pol2). All proteins in this
superfamily for which functions are known are DNA
polymerases.This family is based on the phylogenomic
analysis of JA Eisen (1999, Ph.D. Thesis, Stanford
University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 1172
Score = 29.3 bits (65), Expect = 4.7
Identities = 27/190 (14%), Positives = 52/190 (27%), Gaps = 14/190 (7%)
Query: 6 EEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKN 65
E KKK K+ K + N K+ + K+ K ++K+ ++ +T+ ++
Sbjct: 64 EAKKKDKENHKKVTKPNNIKAVRIACAPKKKKDRKKSLGKDGLLGDILQELNKTETAQRK 123
Query: 66 KNKNRKEEKKKK------------KKRRTKKKEKNKNKSRKEEKKKEAEEEKK--KTKNK 111
K K K+ + E+ K
Sbjct: 124 ITPRLVSVPKLKFSSPADVPAINDFSNHHPAVVDIVKKAIPVSTRYLLEKILIPVPLKRA 183
Query: 112 EKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKK 171
E + E + + K A + + +EE K+ +
Sbjct: 184 EFAGGDVQMEGDPELKLASFDIETYFHDGKDFFPGDENPADEEIMISTTPVIAKQWDYES 243
Query: 172 EEEKRKNEKA 181
E E R
Sbjct: 244 EPEARVVTWK 253
>gnl|CDD|179580 PRK03449, PRK03449, putative inner membrane protein translocase
component YidC; Provisional.
Length = 304
Score = 28.9 bits (65), Expect = 4.7
Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 10/37 (27%)
Query: 116 NKSRKEEEEKKKEAEEK----------KKKRTKKKEK 142
K KEEE KK+ E+ K KR+KKK
Sbjct: 268 GKIDKEEEAKKQAKAERRAANAPKPGAKPKRSKKKAP 304
>gnl|CDD|217834 pfam03998, Utp11, Utp11 protein. This protein is found to be part
of a large ribonucleoprotein complex containing the U3
snoRNA. Depletion of the Utp proteins impedes production
of the 18S rRNA, indicating that they are part of the
active pre-rRNA processing complex. This large RNP
complex has been termed the small subunit (SSU)
processome.
Length = 239
Score = 28.9 bits (65), Expect = 4.7
Identities = 33/180 (18%), Positives = 80/180 (44%), Gaps = 6/180 (3%)
Query: 3 NKKEEKKKKKKRRTKKKEKNKNKSRKEEEEE------KRTKKKEKNKKNKNKSRKEEEKK 56
+ K + +R +K+ +K + + + ++ KR + +K +K K + +
Sbjct: 60 SSKTDDGVHILKREEKEVLSKEQVKLLKTQDLNYVRTKRQAEAKKIEKLKEELHLTDSGS 119
Query: 57 KRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKN 116
K ++ ++ + T + ++ ++R + E + + K+ K
Sbjct: 120 AGPKHIVFVDDEEEQKSFDPAEYFDTTPELLDRRENRPRISQLEKTSLVDEKQKKKSAKK 179
Query: 117 KSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKR 176
K + +E K+++ EKK K+ +++ + + + K+ + ++KK K K K K K+E KR
Sbjct: 180 KRKLYKELKERKEREKKLKKVEQRLELQRELMKKGKGKKKKIVKDKDGKVVYKWKKERKR 239
>gnl|CDD|235549 PRK05658, PRK05658, RNA polymerase sigma factor RpoD; Validated.
Length = 619
Score = 29.0 bits (66), Expect = 4.8
Identities = 16/81 (19%), Positives = 36/81 (44%)
Query: 86 EKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKN 145
+ E ++ ++E ++ + E + + + E E +K E+ K + K+ K
Sbjct: 178 AEEDPAHVGSELEELDDDEDEEEEEDENDDSLAADESELPEKVLEKFKALAKQYKKLRKA 237
Query: 146 KSRKEEEEEEKKKKKKKKKKK 166
+ +K E + KK K ++K
Sbjct: 238 QEKKVEGRLAQHKKYAKLREK 258
>gnl|CDD|237200 PRK12778, PRK12778, putative bifunctional 2-polyprenylphenol
hydroxylase/glutamate synthase subunit beta;
Provisional.
Length = 752
Score = 29.3 bits (66), Expect = 4.8
Identities = 12/54 (22%), Positives = 20/54 (37%)
Query: 51 KEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEE 104
K E ++ K +E+ + K K K RT + + E + EE
Sbjct: 261 KTIEGEELLKLEERTAAWRAELRKSMKPKERTAIERVPMPELDPEYRAHNRFEE 314
>gnl|CDD|220413 pfam09805, Nop25, Nucleolar protein 12 (25kDa). Members of this
family of proteins are part of the yeast nuclear pore
complex-associated pre-60S ribosomal subunit. The family
functions as a highly conserved exonuclease that is
required for the 5'-end maturation of 5.8S and 25S
rRNAs, demonstrating that 5'-end processing also has a
redundant pathway. Nop25 binds late pre-60S ribosomes,
accompanying them from the nucleolus to the nuclear
periphery; and there is evidence for both physical and
functional links between late 60S subunit processing and
export.
Length = 134
Score = 28.1 bits (63), Expect = 4.8
Identities = 27/103 (26%), Positives = 57/103 (55%), Gaps = 3/103 (2%)
Query: 75 KKKKKRRTKKKEKNKNKSRK---EEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEE 131
K+K++RR K +E+ K K R+ EE+K+ EE K++ + + K + ++ K EE+ + E+
Sbjct: 29 KRKQQRRKKAQEEAKEKEREERIEERKRIREERKQELEKQLKERKEALKLLEEENDDEED 88
Query: 132 KKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEE 174
+ + T+ E ++ + E + +++ + K +T EE
Sbjct: 89 AETEDTEDVEDDEWEGFPEPTVTDYEEEYIDEDKYKTTVTVEE 131
>gnl|CDD|220897 pfam10883, DUF2681, Protein of unknown function (DUF2681). This
family of proteins is found in bacteria. Proteins in
this family are typically between 81 and 117 amino acids
in length.
Length = 87
Score = 27.0 bits (60), Expect = 5.1
Identities = 12/47 (25%), Positives = 23/47 (48%)
Query: 74 KKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRK 120
KK +++ R + E + + K + E + K + KN+E + SR
Sbjct: 26 KKAQRENRKLQAENEQLATEKAVAETEVKNAKVRQKNEENTRRLSRD 72
>gnl|CDD|234029 TIGR02830, spore_III_AG, stage III sporulation protein AG. CC A
comparative genome analysis of all sequenced genomes of
shows a number of proteins conserved strictly among the
endospore-forming subset of the Firmicutes. This
protein, a member of this panel, is found in a spore
formation operon and is designated stage III sporulation
protein AG [Cellular processes, Sporulation and
germination].
Length = 186
Score = 28.5 bits (64), Expect = 5.2
Identities = 18/86 (20%), Positives = 33/86 (38%), Gaps = 13/86 (15%)
Query: 84 KKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEK----------- 132
++ +S +K E + KE + K+ E + KE EK
Sbjct: 24 SSSEDIEESDTPNNEKTEPEFVQGEVQKEDEISDYEKQYENELKEILEKIEGVGDVTVMV 83
Query: 133 KKKRTKKK--EKNKNKSRKEEEEEEK 156
+++K KN +K ++ EE +K
Sbjct: 84 NLDSSEEKVYAKNTSKGQQTTEETDK 109
>gnl|CDD|237276 PRK13024, PRK13024, bifunctional preprotein translocase subunit
SecD/SecF; Reviewed.
Length = 755
Score = 29.0 bits (66), Expect = 5.2
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 157 KKKKKKKKKKRTKKKEEEKRKNE 179
+K++ KKKKKR K K+ E K E
Sbjct: 733 EKRRLKKKKKRKKVKKWEVEKIE 755
Score = 28.7 bits (65), Expect = 7.6
Identities = 13/21 (61%), Positives = 17/21 (80%)
Query: 155 EKKKKKKKKKKKRTKKKEEEK 175
EK++ KKKKK+K+ KK E EK
Sbjct: 733 EKRRLKKKKKRKKVKKWEVEK 753
>gnl|CDD|216807 pfam01956, DUF106, Integral membrane protein DUF106. This
archaebacterial protein family has no known function.
Members are predicted to be integral membrane proteins.
Length = 168
Score = 28.0 bits (63), Expect = 5.4
Identities = 18/83 (21%), Positives = 37/83 (44%), Gaps = 13/83 (15%)
Query: 132 KKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKAVRLTKLSAFG 191
+K ++ +K+EK K +E + K KK +K++ + E++K +
Sbjct: 40 RKMEKYQKREKEIQKRARELRKNGDKLSPKKFEKRQEELMEDQK-------EMMMDMMKP 92
Query: 192 -ISGYLLQ-----WIRNFLSGWI 208
+ + Q WI +F SG++
Sbjct: 93 NFAIMIPQILIFGWINSFFSGFV 115
>gnl|CDD|114172 pfam05432, BSP_II, Bone sialoprotein II (BSP-II). Bone
sialoprotein (BSP) is a major structural protein of the
bone matrix that is specifically expressed by
fully-differentiated osteoblasts. The expression of bone
sialoprotein (BSP) is normally restricted to mineralised
connective tissues of bones and teeth where it has been
associated with mineral crystal formation. However, it
has been found that ectopic expression of BSP occurs in
various lesions, including oral and extraoral
carcinomas, in which it has been associated with the
formation of microcrystalline deposits and the
metastasis of cancer cells to bone.
Length = 291
Score = 28.9 bits (64), Expect = 5.5
Identities = 32/146 (21%), Positives = 57/146 (39%), Gaps = 20/146 (13%)
Query: 20 EKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKK 79
E+N + EEE E+ T +E+N ++ + + EE + + T
Sbjct: 52 EENGDGDSSEEEGEEETSNEEENNEDSDGNEDEEAEAENTTLSTVTLGYGGD-------- 103
Query: 80 RRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKK 139
N + + KK KK TK E ++++ +EEEE+++ E+ ++ T
Sbjct: 104 --ATPGTGNIGLAALQLPKKAGNAGKKATKEDESDEDEEEEEEEEEEEAEVEENEQGTNG 161
Query: 140 KEKNKNKS----------RKEEEEEE 155
N + EE EEE
Sbjct: 162 TSTNSTEVDHGNGSSGGDNGEEGEEE 187
>gnl|CDD|185618 PTZ00438, PTZ00438, gamete antigen 27/25-like protein; Provisional.
Length = 374
Score = 28.9 bits (64), Expect = 5.6
Identities = 16/66 (24%), Positives = 34/66 (51%)
Query: 90 NKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRK 149
N E E E KN+E+ + +EE+E +E EE ++ ++E + ++ +
Sbjct: 79 NDKSDNENDVELEGLNIIVKNEEERGTQKEEEEDEDVEEIEEVEEVEVVEEEYDDDEDSE 138
Query: 150 EEEEEE 155
+++E+E
Sbjct: 139 KDDEKE 144
>gnl|CDD|227570 COG5245, DYN1, Dynein, heavy chain [Cytoskeleton].
Length = 3164
Score = 29.2 bits (65), Expect = 5.8
Identities = 20/121 (16%), Positives = 46/121 (38%)
Query: 83 KKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEK 142
+E + E ++ E + ++ + + K+K A++ ++ +
Sbjct: 2086 YIEELDCTNVNLVEGVRKYNEYGRGMGELKEQLSNTVVILGVKEKNADDALSGTPGERLE 2145
Query: 143 NKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKAVRLTKLSAFGISGYLLQWIRN 202
+ KS E + +++ +KR + K + AV L + I L+ IR+
Sbjct: 2146 REVKSVFVEAPRDMLFLLEEEVRKRKGSVMKFKSSKKPAVLEAVLFVYKIKKASLREIRS 2205
Query: 203 F 203
F
Sbjct: 2206 F 2206
>gnl|CDD|178635 PLN03086, PLN03086, PRLI-interacting factor K; Provisional.
Length = 567
Score = 29.1 bits (65), Expect = 5.8
Identities = 13/64 (20%), Positives = 33/64 (51%)
Query: 80 RRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKK 139
RR ++K + + + RK+ K + E E+K + K + + ++ +A E + K ++
Sbjct: 6 RRAREKLEREQRERKQRAKLKLERERKAKEEAAKQREAIEAAQRSRRLDAIEAQIKADQQ 65
Query: 140 KEKN 143
+++
Sbjct: 66 MQES 69
>gnl|CDD|211578 TIGR00497, hsdM, type I restriction system adenine methylase
(hsdM). Function: methylation of specific adenine
residues; required for both restriction and modification
activities. The ECOR124/3 I enzyme recognizes
5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257:
960-969 (1996)) [DNA metabolism,
Restriction/modification].
Length = 501
Score = 28.8 bits (64), Expect = 5.9
Identities = 13/63 (20%), Positives = 26/63 (41%)
Query: 71 KEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAE 130
+E+K + + +K + S+KEE E+ K + + + E +KE
Sbjct: 422 REKKNNRLSPKNIEKIVDCFNSKKEEANFAKSVERDKIRESNYDLTVGKYVNSEAEKEEL 481
Query: 131 EKK 133
+ K
Sbjct: 482 DIK 484
>gnl|CDD|236768 PRK10819, PRK10819, transport protein TonB; Provisional.
Length = 246
Score = 28.5 bits (64), Expect = 5.9
Identities = 14/65 (21%), Positives = 26/65 (40%), Gaps = 6/65 (9%)
Query: 121 EEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEK 180
E ++ K + + K K K K K K K +++ K++ K + + +N
Sbjct: 83 EPPKEAPVVIPKPEPKPKPKPKPKPKPVK------KVEEQPKREVKPVEPRPASPFENTA 136
Query: 181 AVRLT 185
R T
Sbjct: 137 PARPT 141
>gnl|CDD|217476 pfam03286, Pox_Ag35, Pox virus Ag35 surface protein.
Length = 198
Score = 28.2 bits (63), Expect = 6.0
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 6/82 (7%)
Query: 72 EEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEE 131
++ KKK+ T +K KS+K++K+K EEEKK + +K EE E + E
Sbjct: 48 PKQPKKKRPTTPRKPATTKKSKKKDKEKLTEEEKKPESDDDKT------EENENDPDNNE 101
Query: 132 KKKKRTKKKEKNKNKSRKEEEE 153
+ + N E++
Sbjct: 102 ESGDSQESASANSLSDIDNEDD 123
Score = 27.8 bits (62), Expect = 7.4
Identities = 13/61 (21%), Positives = 25/61 (40%)
Query: 70 RKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEA 129
++ +KK+ R K K KE+ +E ++ + E+N+N EE +
Sbjct: 49 KQPKKKRPTTPRKPATTKKSKKKDKEKLTEEEKKPESDDDKTEENENDPDNNEESGDSQE 108
Query: 130 E 130
Sbjct: 109 S 109
>gnl|CDD|237147 PRK12586, PRK12586, putative monovalent cation/H+ antiporter
subunit G; Reviewed.
Length = 145
Score = 27.8 bits (62), Expect = 6.1
Identities = 7/38 (18%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 50 RKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEK 87
RK + + +N E + + K+R + ++K
Sbjct: 104 RKNDAHTHASILLSS-NEQNSTEALQLRAKKREEHRKK 140
>gnl|CDD|227466 COG5137, COG5137, Histone chaperone involved in gene silencing
[Transcription / Chromatin structure and dynamics].
Length = 279
Score = 28.4 bits (63), Expect = 6.1
Identities = 22/97 (22%), Positives = 42/97 (43%), Gaps = 1/97 (1%)
Query: 61 KKEKNKNKNRKEEKKKKKKRRTKKKEKNK-NKSRKEEKKKEAEEEKKKTKNKEKNKNKSR 119
K EK+ + E+ ++ R EK + + E +E + N+ + R
Sbjct: 122 KLEKSDVEEPSEKVDEEDVEREILAEKPRVTRFNIVWDNDEDNDEAPPAQPDVDNEEEER 181
Query: 120 KEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEK 156
EE + ++E E+++ E N+ + +EEEE E
Sbjct: 182 LEESDGREEEEDEEVGSDSYGEGNRELNEEEEEEAEG 218
Score = 28.4 bits (63), Expect = 7.4
Identities = 19/95 (20%), Positives = 47/95 (49%)
Query: 86 EKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKN 145
+ + + + + ++E E+E+ + + + + +EEEE+ + +++ + + E+
Sbjct: 176 NEEEERLEESDGREEEEDEEVGSDSYGEGNRELNEEEEEEAEGSDDGEDVVDYEGERIDK 235
Query: 146 KSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEK 180
K +EEE EE+ + + + EE R NE+
Sbjct: 236 KQGEEEEMEEEVINLFEIEWEEESPSEEVPRNNEE 270
Score = 28.0 bits (62), Expect = 9.0
Identities = 19/104 (18%), Positives = 45/104 (43%), Gaps = 1/104 (0%)
Query: 65 NKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEE 124
N+ + R EE +++ ++ + E +E EEE + + + E + E +
Sbjct: 176 NEEEERLEESDGREEEEDEEVGSDSYGEGNRELNEEEEEEAEGSDDGEDVVDYE-GERID 234
Query: 125 KKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRT 168
KK+ EE+ ++ + + + EE + ++ KK++
Sbjct: 235 KKQGEEEEMEEEVINLFEIEWEEESPSEEVPRNNEESPAKKQKV 278
Score = 28.0 bits (62), Expect = 9.9
Identities = 21/103 (20%), Positives = 48/103 (46%), Gaps = 2/103 (1%)
Query: 19 KEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKK 78
+E+ + +EEEE++ + N+ + +EEE+ + + E + + E+ KK
Sbjct: 179 EERLEESDGREEEEDEEVGSDSYGEGNRELNEEEEEEAEGSDDGEDVVDY--EGERIDKK 236
Query: 79 KRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKE 121
+ ++ E+ + E ++E+ E+ N+E K + E
Sbjct: 237 QGEEEEMEEEVINLFEIEWEEESPSEEVPRNNEESPAKKQKVE 279
>gnl|CDD|224259 COG1340, COG1340, Uncharacterized archaeal coiled-coil protein
[Function unknown].
Length = 294
Score = 28.5 bits (64), Expect = 6.1
Identities = 33/167 (19%), Positives = 78/167 (46%), Gaps = 3/167 (1%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRT-- 59
K K+ +++ ++ + + + + + E+ +E K +E +K + + +E +
Sbjct: 14 KRKQLKEEIEELKEKRDELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQE 73
Query: 60 -KKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKS 118
K+K N +E +K+ ++ + K+ E N + ++E E +KK + +
Sbjct: 74 LKEKRDEINAKLQELRKEYRELKEKRNEFNLGGRSIKSLEREIERLEKKQQTSVLTPEEE 133
Query: 119 RKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKK 165
R+ ++ K+ +E + + +E K K K E +E KKK ++ +K
Sbjct: 134 RELVQKIKELRKELEDAKKALEENEKLKELKAEIDELKKKAREIHEK 180
Score = 28.1 bits (63), Expect = 9.3
Identities = 36/182 (19%), Positives = 81/182 (44%)
Query: 6 EEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKN 65
E K+K+ K+ R+ E EK+ + + + + ++ ++ ++ + K
Sbjct: 93 RELKEKRNEFNLGGRSIKSLEREIERLEKKQQTSVLTPEEERELVQKIKELRKELEDAKK 152
Query: 66 KNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEK 125
+ ++ K+ K + KK+ + + +E EA+E ++ + ++ RKE +E
Sbjct: 153 ALEENEKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADEL 212
Query: 126 KKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKAVRLT 185
+E E KK + E+ +N + E E+K K + K+K ++++ E+ K
Sbjct: 213 HEEFVELSKKIDELHEEFRNLQNELRELEKKIKALRAKEKAAKRREKREELKERAEEIYE 272
Query: 186 KL 187
K
Sbjct: 273 KF 274
>gnl|CDD|216108 pfam00769, ERM, Ezrin/radixin/moesin family. This family of
proteins contain a band 4.1 domain (pfam00373), at their
amino terminus. This family represents the rest of these
proteins.
Length = 244
Score = 28.6 bits (64), Expect = 6.2
Identities = 25/137 (18%), Positives = 66/137 (48%), Gaps = 13/137 (9%)
Query: 46 KNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEK 105
+ + ++E +++ + +E + ++ E+ ++ EEK K+ EEE
Sbjct: 2 EAEREQQELEERMEQMEEDMRRAQKELEEYEETALEL------------EEKLKQEEEEA 49
Query: 106 KKTKNKEKN-KNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKK 164
+ + K + ++R+ EEE EE+++ + E ++ EEE E+K+ + ++ +
Sbjct: 50 QLLEKKADELEEENRRLEEEAAASEEERERLEAEVDEATAEVAKLEEEREKKEAETRQLQ 109
Query: 165 KKRTKKKEEEKRKNEKA 181
++ + +E +R ++
Sbjct: 110 QELREAQEAHERARQEL 126
Score = 28.2 bits (63), Expect = 8.3
Identities = 23/116 (19%), Positives = 60/116 (51%), Gaps = 1/116 (0%)
Query: 72 EEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKK-KEAE 130
EE +++++ ++ E+ + R+ +K+ E EE ++ + + + EKK E E
Sbjct: 1 EEAEREQQELEERMEQMEEDMRRAQKELEEYEETALELEEKLKQEEEEAQLLEKKADELE 60
Query: 131 EKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKAVRLTK 186
E+ ++ ++ ++ + + E E ++ + K ++ +KKE E R+ ++ +R +
Sbjct: 61 EENRRLEEEAAASEEERERLEAEVDEATAEVAKLEEEREKKEAETRQLQQELREAQ 116
>gnl|CDD|204467 pfam10376, Mei5, Double-strand recombination repair protein. Mei5
is one of a pair of meiosis-specific proteins which
facilitate the loading of Dmc1 on to Rad51 on DNA at
double-strand breaks during recombination. Recombination
is carried out by a large protein complex based around
the two RecA homologues, Rad51 and Dmc1. This complex
may play both a catalytic and a structural role in the
interaction between homologous chromosomes during
meiosis. Mei5 is seen to contain a coiled-coli region.
Length = 212
Score = 28.2 bits (63), Expect = 6.2
Identities = 31/147 (21%), Positives = 60/147 (40%), Gaps = 4/147 (2%)
Query: 11 KKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNR 70
KK RR+ K K E E E + + EE + K EK + +
Sbjct: 40 KKTRRSSNALDRVAKRLKVENFELDQAVSEPPESSLKNIDSEENETSNEKLIEKWRTICQ 99
Query: 71 KEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKS-RKEEEEKKKEA 129
E + + + N+ K+ K+KE E EK+K + + ++ R+ + +K E
Sbjct: 100 SE---SRSILNSSSPKINRMGGYKDFKRKELEAEKRKLEYQVDEESDDLRRLKLVEKYEI 156
Query: 130 EEKKKKRTKKKEKNKNKSRKEEEEEEK 156
+ + + +K + ++E E+ +K
Sbjct: 157 KNDLSELQELIKKWEKAKQRELEKLQK 183
>gnl|CDD|153342 cd07658, F-BAR_NOSTRIN, The F-BAR (FES-CIP4 Homology and
Bin/Amphiphysin/Rvs) domain of Nitric Oxide Synthase
TRaffic INducer (NOSTRIN). F-BAR domains are
dimerization modules that bind and bend membranes and
are found in proteins involved in membrane dynamics and
actin reorganization. Nitric Oxide Synthase TRaffic
INducer (NOSTRIN) is expressed in endothelial and
epithelial cells and is involved in the regulation,
trafficking and targeting of endothelial NOS (eNOS).
NOSTRIN facilitates the endocytosis of eNOS by
coordinating the functions of dynamin and the
Wiskott-Aldrich syndrome protein (WASP). Increased
expression of NOSTRIN may be correlated to preeclampsia.
NOSTRIN contains an N-terminal F-BAR domain and a
C-terminal SH3 domain. F-BAR domains form banana-shaped
dimers with a positively-charged concave surface that
binds to negatively-charged lipid membranes. They can
induce membrane deformation in the form of long tubules.
The F-BAR domain of NOSTRIN is necessary and sufficient
for its membrane association and is responsible for its
subcellular localization.
Length = 239
Score = 28.5 bits (64), Expect = 6.3
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 8/84 (9%)
Query: 58 RTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNK 117
K K R E+ K KKK +E EK ++ E+ K++ K+K NK
Sbjct: 110 EVDKAAKLLTDWRSEQIKVKKKLHGLAREN--------EKLQDQVEDNKQSCTKQKMLNK 161
Query: 118 SRKEEEEKKKEAEEKKKKRTKKKE 141
+K E + KE E+ + KR K +E
Sbjct: 162 LKKSAEVQDKEDEKLEAKRKKGEE 185
>gnl|CDD|148701 pfam07246, Phlebovirus_NSM, Phlebovirus nonstructural protein NS-M.
This family consists of several Phlebovirus
nonstructural NS-M proteins which represent the
N-terminal region of the M polyprotein precursor. The
function of this family is unknown.
Length = 264
Score = 28.3 bits (62), Expect = 6.5
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 119 RKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTK-KKEEEKRK 177
R + E+ KK AEEK +K ++ + SR + E ++KK + +K R K+ +E R
Sbjct: 140 RVDYEKLKKNAEEKDATIQRKTKEMEEDSRNQIAHHEIQQKKNEIQKLRNDLKRGQEHRD 199
Query: 178 NEKAVR 183
+ V
Sbjct: 200 AKLRVE 205
>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1);
Provisional.
Length = 1466
Score = 28.8 bits (64), Expect = 6.6
Identities = 23/91 (25%), Positives = 37/91 (40%), Gaps = 3/91 (3%)
Query: 3 NKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKK 62
N+K KK K K+ + K+ E + N K++N+S KK K
Sbjct: 727 NQKVSSKKSSNNDNDKDSDMKSSAYKDSERGYDPDEMNGNSKHENESASN---KKSCKMS 783
Query: 63 EKNKNKNRKEEKKKKKKRRTKKKEKNKNKSR 93
++N ++N K + K+K K N R
Sbjct: 784 DENASENNAGGKLPFLRNLFKRKPKAPNNLR 814
>gnl|CDD|218684 pfam05672, MAP7, MAP7 (E-MAP-115) family. The organisation of
microtubules varies with the cell type and is presumably
controlled by tissue-specific microtubule-associated
proteins (MAPs). The 115-kDa epithelial MAP
(E-MAP-115/MAP7) has been identified as a
microtubule-stabilising protein predominantly expressed
in cell lines of epithelial origin. The binding of this
microtubule associated protein is nucleotide
independent.
Length = 171
Score = 28.1 bits (62), Expect = 6.6
Identities = 26/138 (18%), Positives = 81/138 (58%)
Query: 51 KEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKN 110
EE + +K+ + + + +EE++++++ + E+ + K R E++ EEE ++ +
Sbjct: 21 AEEATRLLAEKRRQAREQREQEEQERREQEEQDRLEREELKRRAAEERLRREEEARRQEE 80
Query: 111 KEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKK 170
+ + + + + + +++E +E++++ +K+K + ++R EE E + +++K ++ ++
Sbjct: 81 ERAREKEEKAKRKAEEEEKQEQEEQERIQKQKEEAEARAREEAERMRLEREKHFQQIEQE 140
Query: 171 KEEEKRKNEKAVRLTKLS 188
+ E K++ E+ ++ T+ S
Sbjct: 141 RLERKKRLEEIMKRTRKS 158
>gnl|CDD|220614 pfam10174, Cast, RIM-binding protein of the cytomatrix active zone.
This is a family of proteins that form part of the CAZ
(cytomatrix at the active zone) complex which is
involved in determining the site of synaptic vesicle
fusion. The C-terminus is a PDZ-binding motif that binds
directly to RIM (a small G protein Rab-3A effector). The
family also contains four coiled-coil domains.
Length = 774
Score = 28.8 bits (64), Expect = 6.6
Identities = 29/165 (17%), Positives = 77/165 (46%)
Query: 17 KKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKK 76
K K + + +E++ + + +++ K E K + +KK +N + + ++++
Sbjct: 355 KHNTLTKKTASLQAAQEEKATYAGEIEDMRDRYEKTERKLRVLQKKIENLQETFRRKERR 414
Query: 77 KKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKR 136
K+ + + + + + +K + +K + E+ K + ++E +++E E KK+
Sbjct: 415 LKEEKERLRSLQTDTNTDTALEKLEKALAEKERIIERLKEQRDRDERYEQEEFETYKKEF 474
Query: 137 TKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKA 181
KE+ +N K E E + + K++ K + +++ E+A
Sbjct: 475 EDLKEEVQNLQLKLSERELQLELLKEEVSKLASNQLKQRSDLERA 519
>gnl|CDD|233294 TIGR01159, DRP1, density-regulated protein DRP1. This protein
family shows weak but suggestive similarity to
translation initiation factor SUI1 and its prokaryotic
homologs.
Length = 173
Score = 27.9 bits (62), Expect = 6.7
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 128 EAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKAVRLTKL 187
EA + + +K EK+ +K +E E KKKKK +K T K+E ++ V L
Sbjct: 52 EAVTIGEAQEEKGEKDLLGIQKAQEAREGGKKKKKLPQKVTIKREPRTKRKFVTVI-KGL 110
Query: 188 SAFGI 192
F I
Sbjct: 111 ETFDI 115
>gnl|CDD|236078 PRK07726, PRK07726, DNA topoisomerase III; Provisional.
Length = 658
Score = 28.6 bits (65), Expect = 6.7
Identities = 15/69 (21%), Positives = 25/69 (36%), Gaps = 4/69 (5%)
Query: 103 EEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKK 162
E+ K++ K K N + + + K K K K +E + + KK
Sbjct: 594 EQAKQSSEKYKFDNLTGPKCPDCGK----PMLKVKGKNGKMLVCQDRECGKRKNVSKKTN 649
Query: 163 KKKKRTKKK 171
+ KKK
Sbjct: 650 ARCPNCKKK 658
>gnl|CDD|232965 TIGR00414, serS, seryl-tRNA synthetase. This model represents the
seryl-tRNA synthetase found in most organisms. This
protein is a class II tRNA synthetase, and is recognized
by the pfam model tRNA-synt_2b. The seryl-tRNA
synthetases of two archaeal species, Methanococcus
jannaschii and Methanobacterium thermoautotrophicum,
differ considerably and are included in a different
model [Protein synthesis, tRNA aminoacylation].
Length = 418
Score = 28.5 bits (64), Expect = 6.8
Identities = 19/91 (20%), Positives = 32/91 (35%), Gaps = 1/91 (1%)
Query: 36 TKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRK- 94
KE K + EK + K +E + K+ + + + K K
Sbjct: 12 DLVKESLKARGLSVDIDLEKLIALDDERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKI 71
Query: 95 EEKKKEAEEEKKKTKNKEKNKNKSRKEEEEK 125
EE KKE +E K++ E ++K
Sbjct: 72 EEIKKELKELKEELTELSAALKALEAELQDK 102
>gnl|CDD|220818 pfam10595, UPF0564, Uncharacterized protein family UPF0564. This
family of proteins has no known function. However, one
of the members is annotated as an EF-hand family
protein.
Length = 349
Score = 28.6 bits (64), Expect = 6.9
Identities = 42/176 (23%), Positives = 80/176 (45%), Gaps = 4/176 (2%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKK 61
+EE+ K+K R + ++ SR K ++ KK K +K + KKK K
Sbjct: 137 DKMQEEELKRKIRVQMRAQELLQSSRLPPRMAKHEAQERLTKKKKRGQKKSKYKKKTFKP 196
Query: 62 KEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKE 121
K + ++ +K +K+ +KK+ + + +E+ K+ ++ ++
Sbjct: 197 KRAKSIPDFEKLHEKFQKQLAEKKKSKRPTVPEPFNFQES----HKSSSRTYLDQENISA 252
Query: 122 EEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRK 177
EE K K TKK E R E +E+E K++++KK+ ++ KKK++E
Sbjct: 253 GEENLKPTRRKLPPSTKKWESLVKFLRTERKEKEAKEQQEKKELEQRKKKKKEMAP 308
Score = 28.2 bits (63), Expect = 7.4
Identities = 38/187 (20%), Positives = 75/187 (40%), Gaps = 21/187 (11%)
Query: 15 RTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEK 74
R KKK + K+ + + EEE +K++ + K K K + + EE+
Sbjct: 14 REKKKREKKSIRQSKLEEELNKLEKKEEEAECKKKFKANPVPASVKLPLYEEIMEQNEER 73
Query: 75 KKKKKRRTKKK-----------EKNKNKSRKEEKKKEAEEEKKKTKNKEKNK-------- 115
+++ + ++K E+ + K +K + +++ K +
Sbjct: 74 REEVREKSKAILLSSQKPFSFYEREEQKKAILPRKLRSSTSEREPKKFKAKPVPKSIYIP 133
Query: 116 --NKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEE 173
+EEE K+K + + + + + + K E +E KKKK+ +KK KK+
Sbjct: 134 LLKDKMQEEELKRKIRVQMRAQELLQSSRLPPRMAKHEAQERLTKKKKRGQKKSKYKKKT 193
Query: 174 EKRKNEK 180
K K K
Sbjct: 194 FKPKRAK 200
Score = 28.2 bits (63), Expect = 8.0
Identities = 23/107 (21%), Positives = 56/107 (52%)
Query: 18 KKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKK 77
+ ++ EE K T++K K +S + + +R +K+ K + + ++ E++KK
Sbjct: 242 RTYLDQENISAGEENLKPTRRKLPPSTKKWESLVKFLRTERKEKEAKEQQEKKELEQRKK 301
Query: 78 KKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEE 124
KK+ K K + ++ +K + E +++ K +++ K + ++ E+E
Sbjct: 302 KKKEMAPKVKQRFEANDPAQKLQEERKEQLAKLRKEEKEREKEYEQE 348
>gnl|CDD|240380 PTZ00362, PTZ00362, hypothetical protein; Provisional.
Length = 479
Score = 28.6 bits (64), Expect = 6.9
Identities = 14/62 (22%), Positives = 23/62 (37%)
Query: 57 KRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKN 116
K+ KKK+K +K + KK + K EE + + +N N
Sbjct: 9 KKKKKKKKKASKESSNGSQNSKKTIFMYNLSRRKKRHNEEGTFNNYGTNESQSSSTQNSN 68
Query: 117 KS 118
K+
Sbjct: 69 KN 70
Score = 28.6 bits (64), Expect = 7.1
Identities = 12/64 (18%), Positives = 25/64 (39%)
Query: 37 KKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEE 96
KKK+K KK +K + + N ++ +K ++ E + ++
Sbjct: 9 KKKKKKKKKASKESSNGSQNSKKTIFMYNLSRRKKRHNEEGTFNNYGTNESQSSSTQNSN 68
Query: 97 KKKE 100
K +E
Sbjct: 69 KNEE 72
>gnl|CDD|153289 cd07605, I-BAR_IMD, Inverse (I)-BAR, also known as the IRSp53/MIM
homology Domain (IMD), a dimerization module that binds
and bends membranes. Inverse (I)-BAR (or IMD) is a
member of the Bin/Amphiphysin/Rvs (BAR) domain family.
It is a dimerization and lipid-binding module that bends
membranes and induces membrane protrusions in the
opposite direction compared to classical BAR and F-BAR
domains, which produce membrane invaginations. IMD
domains are found in Insulin Receptor tyrosine kinase
Substrate p53 (IRSp53), Missing in Metastasis (MIM), and
Brain-specific Angiogenesis Inhibitor 1-Associated
Protein 2-like (BAIAP2L) proteins. These are
multi-domain proteins that act as scaffolding proteins
and transducers of a variety of signaling pathways that
link membrane dynamics and the underlying actin
cytoskeleton. Most members contain an N-terminal IMD, an
SH3 domain, and a WASP homology 2 (WH2) actin-binding
motif at the C-terminus, exccept for MIM which does not
carry an SH3 domain. Some members contain additional
domains and motifs. The IMD domain binds and bundles
actin filaments, binds membranes and produces membrane
protrusions, and interacts with the small GTPase Rac.
Length = 223
Score = 28.1 bits (63), Expect = 7.0
Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 73 EKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEK 132
E +K + +K K + K ++E+ K E KK K K++ + +EK +A E+
Sbjct: 104 ELDQKVINKFEKDYKKEYKQKREDLDKARSELKKLQK---KSQKSGTGKYQEKLDQALEE 160
Query: 133 KKKRTKKKEKNKNKSRKEEEEEEKKK 158
+ K+ E ++ ++ EE+++
Sbjct: 161 LNDKQKELEAFVSQGLRDALLEERRR 186
>gnl|CDD|219939 pfam08619, Nha1_C, Alkali metal cation/H+ antiporter Nha1 C
terminus. The C terminus of the plasma membrane Nha1
antiporter plays an important role in the immediate cell
response to hypo-osmotic shock which prevents an
execessive loss of ions and water. This domain is found
with pfam00999.
Length = 430
Score = 28.6 bits (64), Expect = 7.0
Identities = 19/116 (16%), Positives = 44/116 (37%), Gaps = 8/116 (6%)
Query: 69 NRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEE-----KKKTKNKEKNKNKSRKEEE 123
+KKKK + + + R+ +++KE + R
Sbjct: 53 GMLRRVRKKKKGSRAGRRASSLRRRRRQRRKEPQAGTGALGPISQSAISPQ---RRSSTG 109
Query: 124 EKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNE 179
E E++ +K E ++N + E +++ ++ + +K +E+E+R E
Sbjct: 110 ENSAESDNTSYGLSKLAEDSENIDVRPVYESDERSGISEEGSRPSKLREQEQRPTE 165
>gnl|CDD|148630 pfam07133, Merozoite_SPAM, Merozoite surface protein (SPAM). This
family consists of several Plasmodium falciparum SPAM
(secreted polymorphic antigen associated with
merozoites) proteins. Variation among SPAM alleles is
the result of deletions and amino acid substitutions in
non-repetitive sequences within and flanking the alanine
heptad-repeat domain. Heptad repeats in which the a and
d position contain hydrophobic residues generate
amphipathic alpha-helices which give rise to helical
bundles or coiled-coil structures in proteins. SPAM is
an example of a P. falciparum antigen in which a
repetitive sequence has features characteristic of a
well-defined structural element.
Length = 164
Score = 27.9 bits (62), Expect = 7.0
Identities = 22/79 (27%), Positives = 42/79 (53%)
Query: 95 EEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEE 154
EE+++E EEE ++ ++ E + EEEE++ E + K +KK N + +++
Sbjct: 52 EEEEEEDEEEIEEPEDIEDEEEIVEDEEEEEEDEEDNVDLKDIEKKNINDIFNSTQDDNA 111
Query: 155 EKKKKKKKKKKKRTKKKEE 173
+ K KK +++KK E
Sbjct: 112 QNLISKNYKKNEKSKKTAE 130
Score = 27.5 bits (61), Expect = 7.9
Identities = 19/89 (21%), Positives = 42/89 (47%)
Query: 89 KNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSR 148
+N+ K+EK+++ EEE+++ + + + EEE + E EE++ + K+ K
Sbjct: 39 ENEDVKDEKQEDDEEEEEEDEEEIEEPEDIEDEEEIVEDEEEEEEDEEDNVDLKDIEKKN 98
Query: 149 KEEEEEEKKKKKKKKKKKRTKKKEEEKRK 177
+ + + + KK E+ +K
Sbjct: 99 INDIFNSTQDDNAQNLISKNYKKNEKSKK 127
>gnl|CDD|215364 PLN02678, PLN02678, seryl-tRNA synthetase.
Length = 448
Score = 28.5 bits (64), Expect = 7.0
Identities = 17/57 (29%), Positives = 24/57 (42%)
Query: 110 NKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKK 166
+ K NK KE + K E+ + + KE K + KE E +E K K K
Sbjct: 51 SLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQEAKAALDAKLKT 107
>gnl|CDD|110514 pfam01517, HDV_ag, Hepatitis delta virus delta antigen. The
hepatitis delta virus (HDV) encodes a single protein,
the hepatitis delta antigen (HDAg). The central region
of this protein has been shown to bind RNA. Several
interactions are also mediated by a coiled-coil region
at the N terminus of the protein.
Length = 194
Score = 27.9 bits (62), Expect = 7.1
Identities = 29/133 (21%), Positives = 60/133 (45%), Gaps = 12/133 (9%)
Query: 6 EEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKN 65
E +KK+++ ++ NK + EEE +K+K+ K+ RT + E +
Sbjct: 22 EARKKREELEKDLRKANKKIKKLEEENPWLGNVVGIIRKDKDGEGAPPAKRPRTDQMEVD 81
Query: 66 KNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEK 125
+ ++ R++ ++++A E KKK + K+ SR+EEEE
Sbjct: 82 SGP-----------GKRPHAGGFTDQERRDHRRRKALENKKK-QLSSGGKHLSREEEEEL 129
Query: 126 KKEAEEKKKKRTK 138
++ EE +++ +
Sbjct: 130 RRLTEEDEERERR 142
>gnl|CDD|213844 TIGR03657, IsdB, heme uptake protein IsdB. Isd proteins are
iron-regulated surface proteins found in Bacillus,
Staphylococcus and Listeria species and are responsible
for heme scavenging from hemoproteins. The IsdB protein
is only observed in Staphylococcus and consists of an
N-terminal hydrophobic signal sequence, a pair of tandem
NEAT (NEAr Transporter, pfam05031) domains which confers
the ability to bind heme and a C-terminal sortase
processing signal which targets the protein to the cell
wall. IsdB is believed to make a direct contact with
methemoglobin facilitating transfer of heme to IsdB. The
heme is then transferred to other cell wall-bound NEAT
domain proteins such as IsdA and IsdC.
Length = 644
Score = 28.7 bits (63), Expect = 7.1
Identities = 28/157 (17%), Positives = 58/157 (36%)
Query: 3 NKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKK 62
NKKE++ K+ T +K + E+E ++ ++ + K KE + + K
Sbjct: 462 NKKEQQDNSAKKETTPATPSKPTTPPVEKESQKQDSQKDDNKQSPSVEKENDASSESGKD 521
Query: 63 EKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEE 122
+ K K E + TK +N ++ E ++ +T S +
Sbjct: 522 KTPATKPAKGEVESSSTTPTKVVSTTQNVAKPTTASSETTKDVVQTSAGSSEAKDSAPLQ 581
Query: 123 EEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKK 159
+ K + + K +NK++ + E+ K
Sbjct: 582 KANIKNTNDGHTQSQNNKNTQENKAKSLPQTGEESNK 618
Score = 28.4 bits (62), Expect = 9.2
Identities = 35/172 (20%), Positives = 67/172 (38%), Gaps = 3/172 (1%)
Query: 5 KEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEK 64
KE K +T KKE+ N ++KE T K + +S+K++ +K K+
Sbjct: 450 KEAFTKANADKTNKKEQQDNSAKKETTPA--TPSKPTTPPVEKESQKQDSQKDDNKQSPS 507
Query: 65 NKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEE 124
+ +N + K K K K + +S K + K + +++ K+ +
Sbjct: 508 VEKENDASSESGKDKTPATKPAKGEVESSSTTPTKVVSTTQNVAKPTTAS-SETTKDVVQ 566
Query: 125 KKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKR 176
+ E K +K KN + + + K ++ K K + EE +
Sbjct: 567 TSAGSSEAKDSAPLQKANIKNTNDGHTQSQNNKNTQENKAKSLPQTGEESNK 618
>gnl|CDD|226115 COG3587, COG3587, Restriction endonuclease [Defense mechanisms].
Length = 985
Score = 28.6 bits (64), Expect = 7.2
Identities = 33/137 (24%), Positives = 57/137 (41%)
Query: 62 KEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKE 121
KE N K+ K ++ +K K + K E +K + K + N+N+ ++
Sbjct: 563 KEINDESFIKQGFAKDEEELSKLILKERGKVLPETLEKLLFGDLIKDDYLDLNENEFAEK 622
Query: 122 EEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKA 181
E E K +E + K K+ K++ + K++KK+K K R + +E K EK
Sbjct: 623 EPELDKLKDELYEAFEKIKDLIKDRLIGADRIRNAKERKKEKIKIRKENFKEFKALWEKI 682
Query: 182 VRLTKLSAFGISGYLLQ 198
L S L+
Sbjct: 683 NHKAVLQYQIDSEALID 699
>gnl|CDD|225651 COG3109, ProQ, Activator of osmoprotectant transporter ProP [Signal
transduction mechanisms].
Length = 208
Score = 27.9 bits (62), Expect = 7.2
Identities = 11/69 (15%), Positives = 27/69 (39%), Gaps = 7/69 (10%)
Query: 119 RKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKN 178
++ E K + ++ +++ KK+E+ EK ++ R K K + +
Sbjct: 101 KQLAEAKARVQAQRAEQQAKKREEAPAAG-------EKPTAERPATAARPKPKAPREEVH 153
Query: 179 EKAVRLTKL 187
++ L
Sbjct: 154 TPVSDISAL 162
>gnl|CDD|239286 cd02988, Phd_like_VIAF, Phosducin (Phd)-like family, Viral
inhibitor of apoptosis (IAP)-associated factor (VIAF)
subfamily; VIAF is a Phd-like protein that functions in
caspase activation during apoptosis. It was identified
as an IAP binding protein through a screen of a human
B-cell library using a prototype IAP. VIAF lacks a
consensus IAP binding motif and while it does not
function as an IAP antagonist, it still plays a
regulatory role in the complete activation of caspases.
VIAF itself is a substrate for IAP-mediated
ubiquitination, suggesting that it may be a target of
IAPs in the prevention of cell death. The similarity of
VIAF to Phd points to a potential role distinct from
apoptosis regulation. Phd functions as a cytosolic
regulator of G protein by specifically binding to G
protein betagamma (Gbg)-subunits. The C-terminal domain
of Phd adopts a thioredoxin fold, but it does not
contain a CXXC motif. Phd interacts with G protein beta
mostly through the N-terminal helical domain.
Length = 192
Score = 28.0 bits (63), Expect = 7.3
Identities = 16/64 (25%), Positives = 33/64 (51%)
Query: 115 KNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEE 174
K S KEEEE+ E ++ ++K ++ +E +EEE + ++ ++KR + +
Sbjct: 16 KPPSPKEEEEEALELAIQEAHENALEKKLLDELDEELDEEEDDRFLEEYRRKRLAEMKAL 75
Query: 175 KRKN 178
K+
Sbjct: 76 AEKS 79
>gnl|CDD|218437 pfam05107, DUF694, Family of unknown function (DUF694). Family of
hypothetical bacterial proteins.
Length = 278
Score = 28.4 bits (64), Expect = 7.4
Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 115 KNKSRKEEEEKKKEA---EEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKK 171
K K R ++ K E +EK+K + E + R EE +EKKKKKKKKKKK ++
Sbjct: 45 KRKIRDYLQDAKGEEIFVQEKEKLNDEHGELYERADRAEELLKEKKKKKKKKKKKEELRE 104
Query: 172 E 172
Sbjct: 105 W 105
>gnl|CDD|222918 PHA02687, PHA02687, ORF061 late transcription factor VLTF-4;
Provisional.
Length = 231
Score = 28.1 bits (62), Expect = 7.6
Identities = 16/47 (34%), Positives = 24/47 (51%)
Query: 10 KKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKK 56
K KRRTKKK K + + EK +++ KN+ K EE ++
Sbjct: 84 KTPKRRTKKKAKADKPEKSPKAVEKLCPPDDRDDKNEEKEPTEEAQR 130
>gnl|CDD|237028 PRK12267, PRK12267, methionyl-tRNA synthetase; Reviewed.
Length = 648
Score = 28.6 bits (65), Expect = 7.6
Identities = 8/35 (22%), Positives = 18/35 (51%)
Query: 148 RKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKAV 182
R + EEE K++ + + +E+EK+ + +
Sbjct: 509 RIDVEEEIAYIKEQMEGSAPKEPEEKEKKPEKPEI 543
>gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional.
Length = 895
Score = 28.7 bits (64), Expect = 7.8
Identities = 22/143 (15%), Positives = 48/143 (33%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKK 61
E KK+ ++ +E + +K ++ E N N E ++ K +
Sbjct: 587 SRSNEIKKQLNDLESRLQEIEIGFPDDKSYIDKSIREIENEANNLNNKYNEIQENKILIE 646
Query: 62 KEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKE 121
K + K N K++ + KE + E+ K++ + K + +
Sbjct: 647 KLRGKIDNYKKQIAEIDSIIPDLKEITSRINDIEDNLKKSRKALDDAKANRARLESTIEI 706
Query: 122 EEEKKKEAEEKKKKRTKKKEKNK 144
+ E ++ + E K
Sbjct: 707 LRTRINELSDRINDINETLESMK 729
>gnl|CDD|206307 pfam14138, COX16, Cytochrome c oxidase assembly protein COX16.
This family represents homologues of COX16 which has
been shown to be involved in assembly of cytochrome
oxidase. Protein in this family are typically between
106 and 134 amino acids in length.
Length = 79
Score = 26.3 bits (59), Expect = 7.9
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 139 KKEKNKNKSRKEEEEEEKKKKKKKKK 164
+ E+ K ++ EEEE K KK++K
Sbjct: 25 RYERRDRKVQQLEEEEALKLLKKRRK 50
>gnl|CDD|216249 pfam01025, GrpE, GrpE.
Length = 165
Score = 27.6 bits (62), Expect = 8.1
Identities = 18/62 (29%), Positives = 33/62 (53%)
Query: 103 EEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKK 162
EEK++ + E + +E EE ++E EE K + + + +N ++ E E E+ KK
Sbjct: 1 EEKEEEEELEDEEEALEEELEELEEEIEELKDRLLRLLAEFENYRKRTEREREEAKKYAI 60
Query: 163 KK 164
+K
Sbjct: 61 EK 62
>gnl|CDD|226400 COG3883, COG3883, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 265
Score = 28.1 bits (63), Expect = 8.2
Identities = 18/115 (15%), Positives = 44/115 (38%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKK 61
+ +KE+KK ++++ ++K + + E E + K KN K+ +
Sbjct: 151 EQQKEDKKSLEEKQAALEDKLETLVALQNELETQLNSLNSQKAEKNALIAALAAKEASAL 210
Query: 62 KEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKN 116
EK + +K + K++ K ++++ + A + + E
Sbjct: 211 GEKAALEEQKALAEAAAAEAAKQEAAAKAAAQEQAALQAAATAAQPSAVTESASA 265
>gnl|CDD|221408 pfam12072, DUF3552, Domain of unknown function (DUF3552). This
presumed domain is functionally uncharacterized. This
domain is found in bacteria, archaea and eukaryotes.
This domain is about 200 amino acids in length. This
domain is found associated with pfam00013, pfam01966.
This domain has a single completely conserved residue A
that may be functionally important.
Length = 201
Score = 27.9 bits (63), Expect = 8.6
Identities = 43/159 (27%), Positives = 77/159 (48%), Gaps = 14/159 (8%)
Query: 4 KKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKE 63
KKE + KK+ + KE+ K R E E E + ++ E ++ K +KEE
Sbjct: 44 KKEAEALKKEALLEAKEEIH-KLRAEAERELKERRNELQRQEKRLLQKEE---------- 92
Query: 64 KNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEE 123
+RK+E +KK+ ++KEK +++ ++KE E E+ + +++ + S E
Sbjct: 93 ---TLDRKDESLEKKEESLEEKEKELAARQQQLEEKEEELEELIEEQQQELERISGLTAE 149
Query: 124 EKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKK 162
E K+ E+ + K + K +EE +EE KK K+
Sbjct: 150 EAKEILLEEVEAELKHEAAKMIKEIEEEAKEEADKKAKE 188
>gnl|CDD|236172 PRK08173, PRK08173, DNA topoisomerase III; Validated.
Length = 862
Score = 28.5 bits (64), Expect = 8.7
Identities = 10/50 (20%), Positives = 17/50 (34%)
Query: 122 EEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKK 171
E E ++ KK K ++ ++ KK KK +K
Sbjct: 812 EFEPREPKAAAAKKTAAKATAAAATKAEKAAAKKAPAKKTAAKKTAARKT 861
>gnl|CDD|217958 pfam04197, Birna_RdRp, Birnavirus RNA dependent RNA polymerase
(VP1). Birnaviruses are dsRNA viruses. This family
corresponds to the RNA dependent RNA polymerase. This
protein is also known as VP1. All of the birnavirus VP1
proteins contain conserved RdRp motifs that reside in
the catalytic "palm" domain of all classes of
polymerases. However, the birnavirus RdRps lack the
highly conserved Gly-Asp-Asp (GDD) sequence, a component
of the proposed catalytic site of this enzyme family
that exists in the conserved motif VI of the palm domain
of other RdRps.
Length = 855
Score = 28.3 bits (63), Expect = 8.7
Identities = 16/117 (13%), Positives = 38/117 (32%), Gaps = 11/117 (9%)
Query: 68 KNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKK 127
K+R + + + + S + EE + + K ++ + EE ++
Sbjct: 739 KSRINDDPQAEALADLATKLKPASSTVDNWASRTEELSVQLQLLLKANTLAKSQLEETRE 798
Query: 128 EAEEKKKKRTKKKEKNKNKSRKE-----------EEEEEKKKKKKKKKKKRTKKKEE 173
E + + + K+ + E K +K K+R K++
Sbjct: 799 ALEVVQSDKIITGKSPPEKNPGKAANPVVGYHLPAERAPLTPKARKMAKRREKQRRN 855
>gnl|CDD|227666 COG5374, COG5374, Uncharacterized conserved protein [Function
unknown].
Length = 192
Score = 27.8 bits (62), Expect = 8.7
Identities = 11/64 (17%), Positives = 25/64 (39%)
Query: 53 EEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKE 112
EE K+ K +K + + + + +K + + + + + K E ++ K
Sbjct: 129 EENAKKGGKIDKMEADSTDLKARLRKAQILLEGLQKNQEELFKLLDKYNELREQVQKESS 188
Query: 113 KNKN 116
K K
Sbjct: 189 KKKE 192
Score = 27.5 bits (61), Expect = 9.3
Identities = 15/63 (23%), Positives = 27/63 (42%)
Query: 102 EEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKK 161
EE KK +K + S + +K + + ++E K + E E+ +K+
Sbjct: 129 EENAKKGGKIDKMEADSTDLKARLRKAQILLEGLQKNQEELFKLLDKYNELREQVQKESS 188
Query: 162 KKK 164
KKK
Sbjct: 189 KKK 191
>gnl|CDD|219627 pfam07897, DUF1675, Protein of unknown function (DUF1675). The
members of this family are sequences derived from
hypothetical plant proteins of unknown function. One
member of this family is annotated as a putative
RNA-binding protein, but no evidence was found to
support this.
Length = 283
Score = 28.0 bits (62), Expect = 8.8
Identities = 20/157 (12%), Positives = 44/157 (28%), Gaps = 14/157 (8%)
Query: 29 EEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKE---KNKNKNRKEEKKK-----KKKR 80
E EEE R +K+ ++ R+ E K+KR++K+ N + + K
Sbjct: 67 ETEEEWRKRKEMQSL------RRLEAKRKRSEKEYNGVSNGDDMDSINAANGGGSGRDKE 120
Query: 81 RTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKK 140
+K E + + + + ++ + T
Sbjct: 121 SSKGVETGSPIATSSSSGGPSSSGLSELDVGVIGGQSGQTKQVRSPVNNILTGTESTSHG 180
Query: 141 EKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRK 177
+ + K+ ++ T E
Sbjct: 181 TDPVDAETNKSNTTSPTKRSRRPPSVDTNSGGEASLN 217
>gnl|CDD|234352 TIGR03779, Bac_Flav_CT_M, Bacteroides conjugative transposon TraM
protein. Members of this protein family are designated
TraM and are found in a proposed transfer region of a
class of conjugative transposon found in the Bacteroides
lineage [Cellular processes, DNA transformation].
Length = 410
Score = 28.2 bits (63), Expect = 8.9
Identities = 17/119 (14%), Positives = 44/119 (36%), Gaps = 3/119 (2%)
Query: 24 NKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTK 83
+K + E+E K+K+K + ++ + E+ K ++ + + +E + + T
Sbjct: 57 DKMKAYEQEALEQKQKDKKRTLQDLADSFEKSDKESQDYSSSDSGFDEEPDEPAE---TA 113
Query: 84 KKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEK 142
+ S + E K + + +E EE + + + +E+
Sbjct: 114 GSLRPIRSSAAAYRDINRELGSFYEYPKTDEEKELLREVEELESRLATEPSPAPELEEQ 172
>gnl|CDD|149180 pfam07960, CBP4, CBP4. The CBP4 in S. cerevisiae is essential for
the expression and activity of ubiquinol-cytochrome c
reductase. This family appears to be fungal specific.
Length = 128
Score = 27.0 bits (60), Expect = 8.9
Identities = 17/84 (20%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 84 KKEKNKNKSRKEEKKKEAEEEKKKTKNKEKN--KNKSRKEEEEKKKEAEEKKKKRTKKKE 141
+K + + ++++ E K+T +K K + EKK+ E +K + ++ +
Sbjct: 45 RKRYEEERDLRQQEFDELVTILKETSKSDKPIWKTGPIESPWEKKRNVREFQKTKAEEAQ 104
Query: 142 KNKNKSRKEEEEEEKKKKKKKKKK 165
K + + +EE EE + + ++ +K+
Sbjct: 105 KEELERIREELEEARAQSEEMRKE 128
>gnl|CDD|218435 pfam05104, Rib_recp_KP_reg, Ribosome receptor lysine/proline rich
region. This highly conserved region is found towards
the C-terminus of the transmembrane domain. The function
is unclear.
Length = 151
Score = 27.3 bits (60), Expect = 9.0
Identities = 21/58 (36%), Positives = 34/58 (58%)
Query: 98 KKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEE 155
K+ + EE + KE K +S+K +++KK++ EKK K KK+EK K + E +E
Sbjct: 2 KETSYEEALAKQRKESGKTQSQKSDKKKKEKVSEKKGKSKKKEEKPNGKIPEHEPNQE 59
>gnl|CDD|220611 pfam10169, Laps, Learning-associated protein. This is a family of
121-amino acid secretory proteins. Laps functions in the
regulation of neuronal cell adhesion and/or movement and
synapse attachment. Laps binds to the ApC/EBP (Aplysia
CCAAT/enhancer binding protein) promoter and activates
the transcription of ApC/EBP mRNA.
Length = 124
Score = 27.1 bits (60), Expect = 9.1
Identities = 31/123 (25%), Positives = 57/123 (46%)
Query: 55 KKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKN 114
K R+K + K + RK+ K+ R K ++ K A + + ++K
Sbjct: 1 KSLRSKWRRKMRAIKRKKNAPKELARLKKALGLIDGNVLMKDVKDIATVKPAEEVKEKKK 60
Query: 115 KNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEE 174
K + EE+++K E + K R KK ++++ + + KK KKK++K+ KKK+
Sbjct: 61 KEGTESEEDDEKMEVDNKAAVRNKKTLRDQHGQYPAWMNQRQAKKLKKKREKKKKKKKGA 120
Query: 175 KRK 177
K
Sbjct: 121 KNL 123
>gnl|CDD|217483 pfam03305, Lipoprotein_X, Mycoplasma MG185/MG260 protein. Most of
the aligned regions in this family are found towards the
middle of the member proteins.
Length = 237
Score = 27.8 bits (62), Expect = 9.2
Identities = 13/77 (16%), Positives = 22/77 (28%)
Query: 41 KNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKE 100
K+ K K+ ++ K + K K K +KS + +
Sbjct: 153 KDLKAPTKNNQKGGALGSVTSKGNANLLGKFTLDKNSLTSPEVKAFKEADKSEDPQTDSK 212
Query: 101 AEEEKKKTKNKEKNKNK 117
E K +KN
Sbjct: 213 TIELYKDKIPTDKNAGV 229
>gnl|CDD|240341 PTZ00272, PTZ00272, heat shock protein 83 kDa (Hsp83); Provisional.
Length = 701
Score = 28.5 bits (63), Expect = 9.2
Identities = 18/47 (38%), Positives = 26/47 (55%)
Query: 122 EEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRT 168
E+E E EE KK + E+ K + KE +E +KKK KK K+ +
Sbjct: 212 EKEVTDEDEEDTKKADEDGEEPKVEEVKEGDEGKKKKTKKVKEVTKE 258
>gnl|CDD|219901 pfam08555, DUF1754, Eukaryotic family of unknown function
(DUF1754). This is a eukaryotic protein family of
unknown function.
Length = 90
Score = 26.6 bits (59), Expect = 9.4
Identities = 25/83 (30%), Positives = 44/83 (53%)
Query: 60 KKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSR 119
K K K K +KKKKKK++ K ++ ++EE+K AE + K+ + E N+ +
Sbjct: 7 GGKLKLKGKKIDVKKKKKKKKKKNKSKEEVVTEKEEEEKSSAESDLKEGEEDEDNEKIEQ 66
Query: 120 KEEEEKKKEAEEKKKKRTKKKEK 142
+E+ EAE ++ +K+ K
Sbjct: 67 EEDGMNLTEAERAFEEAQRKRLK 89
>gnl|CDD|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular
trafficking and secretion].
Length = 526
Score = 28.3 bits (63), Expect = 9.4
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Query: 115 KNKSRKEEEEKKKEAEEKKKK-RTKKKEKNKNKSRK----EEEEEEKKKKKKKKKK 165
K K R +E ++ EE++ + R +K+E+ NK R EE E +++
Sbjct: 15 KGKGRFSADELRRRREEQQVELRKQKREELLNKRRNLADVSEEAESSFIPMEQQFY 70
>gnl|CDD|219461 pfam07543, PGA2, Protein trafficking PGA2. A Saccharomyces
cerevisiae member of this family (PGA2) is an ER protein
which has been implicated in protein trafficking.
Length = 139
Score = 27.1 bits (60), Expect = 9.5
Identities = 15/87 (17%), Positives = 38/87 (43%)
Query: 77 KKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKR 136
K + + +KE+ + + +E+K K + + + + EE+E+ +
Sbjct: 40 KAQEKEHEKERAEREEAREKKAKISPNALRGGATAGHGEEDTDDEEDEEDFATPSAVPQW 99
Query: 137 TKKKEKNKNKSRKEEEEEEKKKKKKKK 163
KK K + K ++ E E++ ++ +
Sbjct: 100 GKKARKRQRKVIRKLLEAEEQLREDQY 126
>gnl|CDD|187810 cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10.
CRISPR (Clustered Regularly Interspaced Short
Palindromic Repeats) and associated Cas proteins
comprise a system for heritable host defense by
prokaryotic cells against phage and other foreign DNA;
Multidomain protein with permuted HD nuclease domain,
palm domain and Zn-ribbon; MTH326-like has inactivated
polymerase catalytic domain; alr1562 and slr7011 -
predicted only on the basis of size, presence of HD
domain, and location with RAMPs in one operon; signature
gene for type III; also known as Crm2 family.
Length = 475
Score = 28.2 bits (63), Expect = 9.6
Identities = 30/202 (14%), Positives = 58/202 (28%), Gaps = 18/202 (8%)
Query: 7 EKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNK 66
K R + ++ N+ R+E EE + +K ++ + K
Sbjct: 125 LLKSDALERISDRIEDGNEDREEAEELEAARKNVRDFAPVPWIPPAPKIYIYIVSIFNEK 184
Query: 67 N--------KNRKEEKKKKKK---RRTKKKEKNKNKSRKEEK-KKEAEEEKKKTKNKEKN 114
+K K R K+ K +KE E+ K+ +
Sbjct: 185 ELSEKYKEFLLKKRNGLLLDKLGGRARKEYRSVCGLLAAAWKLEKETEQYSLFAKDDLEE 244
Query: 115 KNKSRKEEEEKK------KEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRT 168
K E E+ K ++ K K K EE + K + +++ R
Sbjct: 245 DLKLLLEAGERLCPLCLIKRLLPERLKEKLVLIDEVIKRSKRNREEPRLKYENFREELRE 304
Query: 169 KKKEEEKRKNEKAVRLTKLSAF 190
++E + +
Sbjct: 305 LLEKEPEIVYLFIKAKKNPGPY 326
>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584). This
protein is found in bacteria and eukaryotes. Proteins in
this family are typically between 943 to 1234 amino
acids in length. This family contains a P-loop motif
suggesting it is a nucleotide binding protein. It may be
involved in replication.
Length = 1198
Score = 28.5 bits (64), Expect = 9.6
Identities = 23/181 (12%), Positives = 67/181 (37%), Gaps = 16/181 (8%)
Query: 3 NKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKK 62
N + E++K+ + + K + + E+++ K + + E +++ T+ +
Sbjct: 634 NAELEEQKRAEAEARTALKQARLDLQRLQNEQQSLKDK-----LELAIAERKQQAETQLR 688
Query: 63 EKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEE 122
+ + + E+++ K + + ++ + K + E E +
Sbjct: 689 QLDAQLKQLLEQQQAFL-EALKDDFRELRTERLAKWQVVEGELD----------NQLAQL 737
Query: 123 EEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKAV 182
+ A + K R K+ +K ++ + + K+ K++ + + E V
Sbjct: 738 SAAIEAARTQAKARLKELKKQYDRELASLDVDPNTVKELKRQIEELETTIERIAVRRPEV 797
Query: 183 R 183
R
Sbjct: 798 R 798
>gnl|CDD|218311 pfam04888, SseC, Secretion system effector C (SseC) like family.
SseC is a secreted protein that forms a complex
together with SecB and SecD on the surface of
Salmonella. All these proteins are secreted by the type
III secretion system. Many mucosal pathogens use type
III secretion systems for the injection of effector
proteins into target cells. SecB, SseC and SecD are
inserted into the target cell membrane. where they form
a small pore or translocon. In addition to SseC, this
family includes the bacterial secreted proteins PopB,
PepB, YopB and EspD which are thought to be directly
involved in pore formation, and type III secretion
system translocon.
Length = 303
Score = 27.8 bits (62), Expect = 9.8
Identities = 12/45 (26%), Positives = 26/45 (57%)
Query: 18 KKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKK 62
K + + KS+ ++ E R K+++K ++ + + +K EK + KK
Sbjct: 11 KLAEKQAKSKLQQLERARDKQEKKAEEYQEQIKKAIEKAEEAKKS 55
>gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC. All proteins in this family for
which functions are known are part of an exonuclease
complex with sbcD homologs. This complex is involved in
the initiation of recombination to regulate the levels
of palindromic sequences in DNA. This family is based on
the phylogenomic analysis of JA Eisen (1999, Ph.D.
Thesis, Stanford University) [DNA metabolism, DNA
replication, recombination, and repair].
Length = 1042
Score = 28.4 bits (63), Expect = 10.0
Identities = 15/138 (10%), Positives = 50/138 (36%)
Query: 27 RKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKE 86
E + + +++K +K ++ K ++++ T+
Sbjct: 359 DAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSA 418
Query: 87 KNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNK 146
+ + KK+ E +++ + + + E+ +K +E + +++++ + K
Sbjct: 419 FRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTK 478
Query: 147 SRKEEEEEEKKKKKKKKK 164
+ +E KK +
Sbjct: 479 EQIHLQETRKKAVVLARL 496
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.310 0.127 0.343
Gapped
Lambda K H
0.267 0.0812 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 20,420,290
Number of extensions: 2158733
Number of successful extensions: 56285
Number of sequences better than 10.0: 1
Number of HSP's gapped: 26622
Number of HSP's successfully gapped: 5611
Length of query: 410
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 311
Effective length of database: 6,546,556
Effective search space: 2035978916
Effective search space used: 2035978916
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 60 (26.7 bits)