RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12268
(410 letters)
>d2es4d1 a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB)
{Burkholderia glumae [TaxId: 337]}
Length = 280
Score = 43.1 bits (101), Expect = 3e-05
Identities = 10/147 (6%), Positives = 54/147 (36%), Gaps = 6/147 (4%)
Query: 30 EEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNK 89
+E+ ++ E+ + + + E+K R + + ++ ++ ++
Sbjct: 131 DEQRRQRHDLERIRIANDTTLSPEQKAARLAALDA-----QLTPDERAQQAALHAQQDAV 185
Query: 90 NKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRK 149
K +K ++ + + + + + ++ + + + + E+++ + +
Sbjct: 186 TKIADLQKAGATPDQMRAQIAQTLGPEAAARAAQMQQDDEAWQTRYQAYAAERDR-IAAQ 244
Query: 150 EEEEEEKKKKKKKKKKKRTKKKEEEKR 176
+++ + + +++ E R
Sbjct: 245 GLAPQDRDARIAQLRQQTFTAPGEAIR 271
Score = 36.6 bits (84), Expect = 0.003
Identities = 5/126 (3%), Positives = 39/126 (30%)
Query: 6 EEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKN 65
++K + + ++ ++ + K + ++ + + +
Sbjct: 152 SPEQKAARLAALDAQLTPDERAQQAALHAQQDAVTKIADLQKAGATPDQMRAQIAQTLGP 211
Query: 66 KNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEK 125
+ R + ++ + + + + + + A +++ + + + + E +
Sbjct: 212 EAAARAAQMQQDDEAWQTRYQAYAAERDRIAAQGLAPQDRDARIAQLRQQTFTAPGEAIR 271
Query: 126 KKEAEE 131
+
Sbjct: 272 AASLDR 277
>d1zroa2 a.264.1.1 (A:283-596) Erythrocyte binding antigen region II
{Plasmodium falciparum [TaxId: 5833]}
Length = 314
Score = 35.4 bits (81), Expect = 0.008
Identities = 26/100 (26%), Positives = 42/100 (42%)
Query: 33 EKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKS 92
+ +TK E K + E++ KR K +KEE K+ K+ + ++ N K
Sbjct: 213 QDKTKMIETLKVECKEKPCEDDNCKRKCNSYKEWISKKKEEYNKQAKQYQEYQKGNNYKM 272
Query: 93 RKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEK 132
E K + E KK K N N + +EE + + K
Sbjct: 273 YSEFKSIKPEVYLKKYSEKCSNLNFEDEFKEELHSDYKNK 312
Score = 30.8 bits (69), Expect = 0.29
Identities = 24/179 (13%), Positives = 56/179 (31%)
Query: 1 CKNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTK 60
+ K K ++ K +E K+ + K++ K
Sbjct: 134 WNDLSNRKLVGKINTNSNYVHRNKQNDKLFRDEWWKVIKKDVWNVISWVFKDKTVCKEDD 193
Query: 61 KKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRK 120
+ + E + K + KE+ ++ ++K KE K +
Sbjct: 194 IENIPQFFRWFSEWGDDYCQDKTKMIETLKVECKEKPCEDDNCKRKCNSYKEWISKKKEE 253
Query: 121 EEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNE 179
++ K+ E +K K + K+ + ++ +K + K++ KN+
Sbjct: 254 YNKQAKQYQEYQKGNNYKMYSEFKSIKPEVYLKKYSEKCSNLNFEDEFKEELHSDYKNK 312
>d2o9ca2 d.110.3.9 (A:4-130) Bacteriophytochrome BphP {Deinococcus
radiodurans [TaxId: 1299]}
Length = 127
Score = 32.9 bits (75), Expect = 0.023
Identities = 12/22 (54%), Positives = 13/22 (59%), Gaps = 4/22 (18%)
Query: 219 EPIHIPSGCIQGGHMSGLLFSL 240
EPIHIP G IQ H G L +
Sbjct: 24 EPIHIP-GSIQ-PH--GALLTA 41
>d2oola2 d.110.3.9 (A:26-139) Sensor protein PhyB2 {Rhodopseudomonas
palustris [TaxId: 1076]}
Length = 114
Score = 32.5 bits (74), Expect = 0.027
Identities = 13/22 (59%), Positives = 14/22 (63%), Gaps = 4/22 (18%)
Query: 219 EPIHIPSGCIQGGHMSGLLFSL 240
EPIHIP G IQ H G LF +
Sbjct: 6 EPIHIP-GAIQ-PH--GYLFVV 23
>d3c2wa3 d.110.3.9 (A:5-117) Bacteriophytochrome BphP {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 113
Score = 31.4 bits (71), Expect = 0.056
Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 4/22 (18%)
Query: 219 EPIHIPSGCIQGGHMSGLLFSL 240
EPIH+P G IQ H G L +L
Sbjct: 11 EPIHVP-GAIQ-PH--GALVTL 28
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding
protein 1 (GBP1), C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 300
Score = 32.8 bits (74), Expect = 0.071
Identities = 21/177 (11%), Positives = 67/177 (37%)
Query: 1 CKNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTK 60
+ + + K +K ++ + +K + + + E+ +T
Sbjct: 122 DRCSGLLQVIFSPLEEEVKAGIYSKPGGYRLFVQKLQDLKKKYYEEPRKGIQAEEILQTY 181
Query: 61 KKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRK 120
K K + + + + K+ E + K+ + + E ++ + + +
Sbjct: 182 LKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSY 241
Query: 121 EEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRK 177
+E K+ + + + KE+ + + K +E+E+ K+ +K+ + K + ++ +
Sbjct: 242 QEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQT 298
Score = 32.0 bits (72), Expect = 0.095
Identities = 16/163 (9%), Positives = 62/163 (38%)
Query: 5 KEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEK 64
+E K + + + +++ + +K + ++ K +E +
Sbjct: 137 EEVKAGIYSKPGGYRLFVQKLQDLKKKYYEEPRKGIQAEEILQTYLKSKESMTDAILQTD 196
Query: 65 NKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEE 124
+++E + ++ + + K + K ++ E+K+++ + + + E +
Sbjct: 197 QTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDR 256
Query: 125 KKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKR 167
+ E+++ K +E+ + ++E K + + + +
Sbjct: 257 VQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTK 299
Score = 31.6 bits (71), Expect = 0.13
Identities = 26/179 (14%), Positives = 69/179 (38%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKK 61
++ + +++ K S+ K ++ KK + RK + ++ +
Sbjct: 121 SDRCSGLLQVIFSPLEEEVKAGIYSKPGGYRLFVQKLQDLKKKYYEEPRKGIQAEEILQT 180
Query: 62 KEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKE 121
K+K + + K+KE + + E + A+ + + E+ + +
Sbjct: 181 YLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERS 240
Query: 122 EEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEK 180
+E K+ EK + + K + ++ + +E+++ K+ +K+ K E + K
Sbjct: 241 YQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTK 299
Score = 31.3 bits (70), Expect = 0.17
Identities = 21/176 (11%), Positives = 66/176 (37%)
Query: 4 KKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKE 63
+K+ K+ + ++ + + K K ++ + KK
Sbjct: 106 EKKRDDFCKQNQEASSDRCSGLLQVIFSPLEEEVKAGIYSKPGGYRLFVQKLQDLKKKYY 165
Query: 64 KNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEE 123
+ K + E+ + ++K+ + + ++ +E + + E + ++ E
Sbjct: 166 EEPRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHE 225
Query: 124 EKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNE 179
++K + ++K +E K + K E + + K++++ +++E+ K
Sbjct: 226 MQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEG 281
Score = 30.9 bits (69), Expect = 0.29
Identities = 25/184 (13%), Positives = 66/184 (35%)
Query: 4 KKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKE 63
K+ + +KKR K+ + S + + + + K + +K +
Sbjct: 99 KELAAQLEKKRDDFCKQNQEASSDRCSGLLQVIFSPLEEEVKAGIYSKPGGYRLFVQKLQ 158
Query: 64 KNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEE 123
K K +E +K + + +S + + + +K K E + K+ +
Sbjct: 159 DLKKKYYEEPRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQA 218
Query: 124 EKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEKAVR 183
K E ++K ++K ++ ++ EK + + + K ++ K + ++ +
Sbjct: 219 SAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLL 278
Query: 184 LTKL 187
Sbjct: 279 KEGF 282
Score = 27.4 bits (60), Expect = 3.3
Identities = 25/182 (13%), Positives = 69/182 (37%), Gaps = 2/182 (1%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKK 61
+ K+ +K + EK ++ K+ +E + + + +E + +K
Sbjct: 88 SSFKDVDHLFQKELAAQLEKKRDDFCKQNQEASSDRCSGLLQVIFSPLEEEVKAGIYSKP 147
Query: 62 KEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKE 121
+ ++ KKK +K + + + K KE+ + ++ + + E
Sbjct: 148 GGYRLFVQKLQDLKKKYYEEPRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIE 207
Query: 122 EEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEE--EEKKKKKKKKKKKRTKKKEEEKRKNE 179
E K E+ + K + ++ + +++E +E K+ +K + + +E+ +
Sbjct: 208 VERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTL 267
Query: 180 KA 181
Sbjct: 268 AL 269
>d1twfa_ e.29.1.2 (A:) RBP1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 1449
Score = 32.9 bits (74), Expect = 0.075
Identities = 17/106 (16%), Positives = 31/106 (29%)
Query: 58 RTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNK 117
+ E N+ + K KKR K K E ++ + +
Sbjct: 111 KLLLDEHNELMRQALAIKDSKKRFAAIWTLCKTKMVCETDVPSEDDPTQLVSRGGCGNTQ 170
Query: 118 SRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKK 163
++ K KK + T ++ + + EE K K
Sbjct: 171 PTIRKDGLKLVGSWKKDRATGDADEPELRVLSTEEILNIFKHISVK 216
Score = 32.5 bits (73), Expect = 0.11
Identities = 19/121 (15%), Positives = 34/121 (28%), Gaps = 5/121 (4%)
Query: 35 RTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKS-- 92
+ E N+ + ++ KK+ K K E + T+ + +
Sbjct: 111 KLLLDEHNELMRQALAIKDSKKRFAAIWTLCKTKMVCETDVPSEDDPTQLVSRGGCGNTQ 170
Query: 93 ---RKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRK 149
RK+ K +K + EE + K N+ SR
Sbjct: 171 PTIRKDGLKLVGSWKKDRATGDADEPELRVLSTEEILNIFKHISVKDFTSLGFNEVFSRP 230
Query: 150 E 150
E
Sbjct: 231 E 231
Score = 31.0 bits (69), Expect = 0.32
Identities = 13/107 (12%), Positives = 33/107 (30%), Gaps = 4/107 (3%)
Query: 1 CKNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTK 60
C + + + ++ K+ ++ K K + + E+ +
Sbjct: 106 CMHCGKLLLDEHNELMRQALAIKDSKKRFAAIWTLCKTKMVCETDV----PSEDDPTQLV 161
Query: 61 KKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKK 107
+ N K K + KK++ + + E + + EE
Sbjct: 162 SRGGCGNTQPTIRKDGLKLVGSWKKDRATGDADEPELRVLSTEEILN 208
Score = 30.2 bits (67), Expect = 0.50
Identities = 14/86 (16%), Positives = 25/86 (29%), Gaps = 5/86 (5%)
Query: 8 KKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKS-----RKEEEKKKRTKKK 62
K KKR K K E + + + + RK+ K + KK
Sbjct: 127 IKDSKKRFAAIWTLCKTKMVCETDVPSEDDPTQLVSRGGCGNTQPTIRKDGLKLVGSWKK 186
Query: 63 EKNKNKNRKEEKKKKKKRRTKKKEKN 88
++ + E + K+
Sbjct: 187 DRATGDADEPELRVLSTEEILNIFKH 212
>d1zroa1 a.264.1.1 (A:8-282) Erythrocyte binding antigen region II
{Plasmodium falciparum [TaxId: 5833]}
Length = 275
Score = 31.9 bits (72), Expect = 0.11
Identities = 22/160 (13%), Positives = 53/160 (33%)
Query: 21 KNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKR 80
+ + K +E K + + + K R K + + K + + K
Sbjct: 96 MGNDMDFGGYSTKAENKIQEVFKGAHGEISEHKIKNFRKKWWNEFREKLWEAMLSEHKNN 155
Query: 81 RTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKK 140
K + + + + KE E ++ KS+ + + E++ K
Sbjct: 156 INNCKNIPQEELQITQWIKEWHGEFLLERDNRAKLPKSKCKNNALYEACEKECIDPCMKY 215
Query: 141 EKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNEK 180
+S+ E K+ + +K K+ + + +N+
Sbjct: 216 RDWIIRSKFEWHTLSKEYETQKVPKENAENYLIKISENKN 255
Score = 28.8 bits (64), Expect = 1.2
Identities = 19/170 (11%), Positives = 50/170 (29%)
Query: 8 KKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKN 67
K K +E K + E + + +K+ + + K + + +
Sbjct: 103 GGYSTKAENKIQEVFKGAHGEISEHKIKNFRKKWWNEFREKLWEAMLSEHKNNINNCKNI 162
Query: 68 KNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKK 127
+ + + K + ++ K K K + KE + + +
Sbjct: 163 PQEELQITQWIKEWHGEFLLERDNRAKLPKSKCKNNALYEACEKECIDPCMKYRDWIIRS 222
Query: 128 EAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRK 177
+ E + + +K ++ + + + K K + E K
Sbjct: 223 KFEWHTLSKEYETQKVPKENAENYLIKISENKNDAKVSLLLNNCDAEYSK 272
>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment
(residues 410-1202) {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 760
Score = 32.1 bits (72), Expect = 0.15
Identities = 10/132 (7%), Positives = 43/132 (32%), Gaps = 12/132 (9%)
Query: 47 NKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKK 106
NK R ++ + + + + + + S +E+++ E+ +
Sbjct: 624 NKPRNAIIQELENLGFPRFNKEGKPYYGSPNDEIAEQINDVKGATSDEEDEESSHEDTEN 683
Query: 107 KTKNKEKNKNK------------SRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEE 154
E+ +++ ++ K+ +EK+ + + + + +
Sbjct: 684 VINGPEELYGTYEYLLGMRIWSLTKERYQKLLKQKQEKETELENLLKLSAKDIWNTDLKA 743
Query: 155 EKKKKKKKKKKK 166
+ ++ ++
Sbjct: 744 FEVGYQEFLQRD 755
>d2veaa3 d.110.3.9 (A:4-130) Phytochrome-like protein Cph1
{Synechocystis sp. pcc 6803 [TaxId: 1148]}
Length = 127
Score = 30.2 bits (68), Expect = 0.20
Identities = 8/23 (34%), Positives = 10/23 (43%), Gaps = 4/23 (17%)
Query: 218 SEPIHIPSGCIQGGHMSGLLFSL 240
+ IH IQ H GL+ L
Sbjct: 14 TLAIHTA-HLIQ-PH--GLVVVL 32
>d1jmma_ b.30.6.1 (A:) V-region of surface antigen I/II (SA I/II,
PAC) {Streptococcus mutans [TaxId: 1309]}
Length = 377
Score = 31.2 bits (70), Expect = 0.21
Identities = 19/115 (16%), Positives = 38/115 (33%), Gaps = 6/115 (5%)
Query: 8 KKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKN 67
+K K K E+ K + + KN++ + E + E N N
Sbjct: 1 QKDLADYPVKLKAYED-----EQASIKAALAELEKHKNEDGNLTEPSAQNLVYDLEPNAN 55
Query: 68 KNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEE 122
K K +K+ S+ + +K + + N E++ + + E
Sbjct: 56 L-SLTTDGKFLKASAVDDAFSKSTSKAKYVQKILQLDDLDITNLEQSNDVASSME 109
Score = 29.6 bits (66), Expect = 0.74
Identities = 12/103 (11%), Positives = 29/103 (28%)
Query: 74 KKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKK 133
+K K K ++ + E E+ K + N + ++ + E
Sbjct: 1 QKDLADYPVKLKAYEDEQASIKAALAELEKHKNEDGNLTEPSAQNLVYDLEPNANLSLTT 60
Query: 134 KKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKR 176
+ K + K + + +K + E+
Sbjct: 61 DGKFLKASAVDDAFSKSTSKAKYVQKILQLDDLDITNLEQSND 103
>d2c6ja1 a.264.1.1 (A:15-308) Duffy receptor, alpha form {Plasmodium
knowlesi [TaxId: 5850]}
Length = 294
Score = 31.1 bits (70), Expect = 0.23
Identities = 26/178 (14%), Positives = 54/178 (30%), Gaps = 2/178 (1%)
Query: 2 KNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKK 61
E + +K ++++ + E +E + + KK T K
Sbjct: 110 SQVVENNLRSIFGTDEKAKQDRKQWWNESKEHIWRAMMFSLRSRLKEKFVWICKKDVTLK 169
Query: 62 KEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKE 121
E + +E + K++ K K + + +
Sbjct: 170 VEPQIYRWIREWGRDYMSELPKEQGKLNEKCASKLYYNNMAICMLPLCHDACKSYD--QW 227
Query: 122 EEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKNE 179
KKK+ + K + K+ K + + K++ K+ T + E KR N
Sbjct: 228 ITRKKKQWDVLSTKFSSVKKTQKIGTENIATAYDILKQELNGFKEATFENEINKRDNL 285
Score = 28.1 bits (62), Expect = 2.2
Identities = 12/103 (11%), Positives = 30/103 (29%)
Query: 7 EKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNK 66
+ K++ + +K +K ++ +RK+++ + K K
Sbjct: 187 SELPKEQGKLNEKCASKLYYNNMAICMLPLCHDACKSYDQWITRKKKQWDVLSTKFSSVK 246
Query: 67 NKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTK 109
+ + K+E N K E + +
Sbjct: 247 KTQKIGTENIATAYDILKQELNGFKEATFENEINKRDNLYNHL 289
Score = 26.5 bits (58), Expect = 6.9
Identities = 11/110 (10%), Positives = 35/110 (31%), Gaps = 1/110 (0%)
Query: 19 KEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKK-KRTKKKEKNKNKNRKEEKKKK 77
+E ++ + +E+ + +K +K N K +K++
Sbjct: 179 REWGRDYMSELPKEQGKLNEKCASKLYYNNMAICMLPLCHDACKSYDQWITRKKKQWDVL 238
Query: 78 KKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKK 127
+ + K+ K + + +++ + +N+ K +
Sbjct: 239 STKFSSVKKTQKIGTENIATAYDILKQELNGFKEATFENEINKRDNLYNH 288
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 248
Score = 30.5 bits (68), Expect = 0.26
Identities = 10/122 (8%), Positives = 38/122 (31%)
Query: 46 KNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEK 105
+N E + ++ + +K K++ + + + + +
Sbjct: 127 RNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVVVREGEVIFPDLRTYIQGSGRT 186
Query: 106 KKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKK 165
+ K S E++ + + ++ + E E+ + + + + +
Sbjct: 187 SRLFAGGLTKGASFLLEDDSELLSAFIERAKLYDIEFKSIDEVDFEKLSRELDESRDRYR 246
Query: 166 KR 167
+R
Sbjct: 247 RR 248
>d1ij5a_ a.39.1.9 (A:) Cbp40 (plasmodial specific CaII-binding
protein LAV1-2) {Physarum polycephalum [TaxId: 5791]}
Length = 321
Score = 30.0 bits (66), Expect = 0.49
Identities = 16/124 (12%), Positives = 54/124 (43%)
Query: 6 EEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKN 65
++ +++ KK +N + +K+ + K+++++ ++KE+E+K + + ++
Sbjct: 4 SQELTQREANVKKVHENLEELQKKLDHTSFAHKEDRDRLEAQIAQKEQEQKAKLAEYDQK 63
Query: 66 KNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEK 125
++ +++R + + K R K+ E++ +K +E+
Sbjct: 64 VQNEFDARERAEREREAARGDAAAEKQRLASLLKDLEDDASGYNRLRPSKPMLSEEDTNI 123
Query: 126 KKEA 129
++
Sbjct: 124 LRQL 127
>d1je5a_ b.40.4.7 (A:) gp2.5 {Bacteriophage T7 [TaxId: 10760]}
Length = 197
Score = 29.2 bits (65), Expect = 0.58
Identities = 14/98 (14%), Positives = 27/98 (27%)
Query: 76 KKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKK 135
K R ++ K +E EE + + K + E +
Sbjct: 45 PNKDPRCQRMVDEIVKCHEEAYAAAVEEYEANPPAVARGKKPLKPYEGDMPFFDNGDGTT 104
Query: 136 RTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEE 173
K K + +K +E + K K+ +
Sbjct: 105 TFKFKCYASFQDKKTKETKHINLVVVDSKGKKMEDVPI 142
Score = 25.8 bits (56), Expect = 8.3
Identities = 13/97 (13%), Positives = 25/97 (25%)
Query: 46 KNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEK 105
R + + K E+ +E + KK +
Sbjct: 46 NKDPRCQRMVDEIVKCHEEAYAAAVEEYEANPPAVARGKKPLKPYEGDMPFFDNGDGTTT 105
Query: 106 KKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEK 142
K K ++K KE + + K K+ +
Sbjct: 106 FKFKCYASFQDKKTKETKHINLVVVDSKGKKMEDVPI 142
>d1taza_ a.211.1.2 (A:) Catalytic domain of cyclic nucleotide
phosphodiesterase 1b, PDE1B {Human (Homo sapiens)
[TaxId: 9606]}
Length = 357
Score = 29.3 bits (65), Expect = 0.77
Identities = 9/47 (19%), Positives = 17/47 (36%), Gaps = 1/47 (2%)
Query: 63 EKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTK 109
K+KN+ + ++ + R K +E K+K K
Sbjct: 307 SKSKNQPSFQWRQPSLDVEVGDPNPDVVSFRSTWVK-RIQENKQKWK 352
>d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 138
Score = 27.9 bits (62), Expect = 1.3
Identities = 21/117 (17%), Positives = 49/117 (41%)
Query: 39 KEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKK 98
K + + +++ +E K EE++K ++ K K + +E +
Sbjct: 22 KPPSFDGVPEFNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQ 81
Query: 99 KEAEEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEE 155
K EE K ++ + + +E ++ +R ++K+K+ + RK +E +E
Sbjct: 82 KAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEKDKHAEEVRKNKELKE 138
Score = 27.5 bits (61), Expect = 1.7
Identities = 23/129 (17%), Positives = 46/129 (35%)
Query: 51 KEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKN 110
E K + E + + ++++ + + +K+ + E + ++ +
Sbjct: 6 IELNKCTSGQSFEVILKPPSFDGVPEFNASLPRRRDPSLEEIQKKLEAAEERRKYQEAEL 65
Query: 111 KEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKK 170
+ K E E +K EE KEK K +E E ++ + K
Sbjct: 66 LKHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEKDK 125
Query: 171 KEEEKRKNE 179
EE RKN+
Sbjct: 126 HAEEVRKNK 134
Score = 25.6 bits (56), Expect = 6.3
Identities = 19/117 (16%), Positives = 48/117 (41%)
Query: 46 KNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEAEEEK 105
K S + + + ++ + ++K + + R K +E K E+++ E E +
Sbjct: 22 KPPSFDGVPEFNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQ 81
Query: 106 KKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKK 162
K + ++++ +K + +E ++ + + K EE K K+ K+
Sbjct: 82 KAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEKDKHAEEVRKNKELKE 138
>d1ftra2 d.58.33.1 (A:149-296)
Formylmethanofuran:tetrahydromethanopterin
formyltransferase {Archaeon Methanopyrus kandleri
[TaxId: 2320]}
Length = 148
Score = 27.7 bits (62), Expect = 1.6
Identities = 7/29 (24%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 251 GFNFWLFADDLKVALRVGGQREVDSMQSM 279
G NF++ A+ L+ + VD+++ +
Sbjct: 18 GGNFYIMAESQPAGLQ-AAEAAVDAIKGV 45
>d1qasa3 c.1.18.1 (A:299-625) Phospholipase C isozyme D1 (PLC-D1)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 327
Score = 28.4 bits (63), Expect = 1.7
Identities = 17/120 (14%), Positives = 39/120 (32%), Gaps = 2/120 (1%)
Query: 1 CKNKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTK 60
K K K KK +N +++ +E + + +++ +++ K +E K +
Sbjct: 133 LKGKILLKGKKLGGLLPAGGENGSEATDVSDEVEAAEMEDEAVRSQ-VQHKPKEDKLKLV 191
Query: 61 KKEKNKNKNRKEEKKKK-KKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNKSR 119
+ + K T + + S E + +E + SR
Sbjct: 192 PELSDMIIYCKSVHFGGFSSPGTSGQAFYEMASFSESRALRLLQESGNGFVRHNVSCLSR 251
>d1m5sa2 d.58.33.1 (A:146-297)
Formylmethanofuran:tetrahydromethanopterin
formyltransferase {Archaeon Methanosarcina barkeri
[TaxId: 2208]}
Length = 152
Score = 27.3 bits (61), Expect = 2.1
Identities = 9/29 (31%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 251 GFNFWLFADDLKVALRVGGQREVDSMQSM 279
G NF++F D AL + VD++ +
Sbjct: 18 GGNFFIFGDSQMTALT-AAEAAVDTIAEL 45
>d1m5ha2 d.58.33.1 (A:146-297)
Formylmethanofuran:tetrahydromethanopterin
formyltransferase {Archaeon Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 152
Score = 27.4 bits (61), Expect = 2.3
Identities = 8/29 (27%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 251 GFNFWLFADDLKVALRVGGQREVDSMQSM 279
G NF++ A+ AL + VD++ +
Sbjct: 18 GGNFFIMAETQPSALA-AAKAAVDAISDV 45
>d1gtra2 c.26.1.1 (A:8-338) Glutaminyl-tRNA synthetase (GlnRS)
{Escherichia coli [TaxId: 562]}
Length = 331
Score = 27.5 bits (60), Expect = 3.4
Identities = 10/50 (20%), Positives = 16/50 (32%), Gaps = 2/50 (4%)
Query: 160 KKKKKKKRTKKKEEEKRKNEKAVRLTKLSAFGISGYLLQWIRNFLS--GW 207
K+K ++ + R+ +S GY IR F G
Sbjct: 259 TVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFCKRIGV 308
>d2q4ma1 d.23.1.2 (A:24-212) Hypothetical protein At5g01750 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 189
Score = 26.4 bits (58), Expect = 5.4
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 387 FAIALVTILDQINR 400
F +LV ILD +NR
Sbjct: 176 FIASLVVILDDVNR 189
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus
thermophilus [TaxId: 274]}
Length = 387
Score = 26.6 bits (58), Expect = 5.8
Identities = 17/131 (12%), Positives = 49/131 (37%)
Query: 42 NKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTKKKEKNKNKSRKEEKKKEA 101
+ EE +KK + + + +K+K + + K ++ E+ +
Sbjct: 242 ARLRMALESAPEEIDALERKKLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEIAKL 301
Query: 102 EEEKKKTKNKEKNKNKSRKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKK 161
E ++ + + +++ +E ++E E +++ + + E E + +
Sbjct: 302 RAEWEREREILRKLREAQHRLDEVRREIELAERQYDLNRAAELRYGELPKLEAEVEALSE 361
Query: 162 KKKKKRTKKKE 172
K + R + E
Sbjct: 362 KLRGARFVRLE 372
>d1y2oa1 a.238.1.3 (A:1-248) BAP2/IRSp53 N-terminal domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 248
Score = 26.5 bits (58), Expect = 6.0
Identities = 11/61 (18%), Positives = 25/61 (40%)
Query: 119 RKEEEEKKKEAEEKKKKRTKKKEKNKNKSRKEEEEEEKKKKKKKKKKKRTKKKEEEKRKN 178
++ E + KK ++ + K + E +K +KK + K K ++E +
Sbjct: 106 EQKVELDSRYLSAALKKYQTEQRSKGDALDKCQAELKKLRKKSQGSKNPQKYSDKELQYI 165
Query: 179 E 179
+
Sbjct: 166 D 166
>d2zkmx4 c.1.18.1 (X:312-660) Phospholipase C-beta-2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 349
Score = 26.2 bits (57), Expect = 8.6
Identities = 18/102 (17%), Positives = 39/102 (38%)
Query: 16 TKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKK 75
++ + EEEEE+ + ++ + K +S + + T +E + N + K
Sbjct: 183 AGEEGTELEEEEVEEEEEEESGNLDEEEIKKMQSDEGTAGLEVTAYEEMSSLVNYIQPTK 242
Query: 76 KKKKRRTKKKEKNKNKSRKEEKKKEAEEEKKKTKNKEKNKNK 117
+ +K ++ S E K K + + NK +
Sbjct: 243 FVSFEFSAQKNRSYVISSFTELKAYDLLSKASVQFVDYNKRQ 284
>d1ab4a_ e.11.1.1 (A:) DNA Gyrase A {Escherichia coli [TaxId: 562]}
Length = 493
Score = 26.1 bits (57), Expect = 9.4
Identities = 12/142 (8%), Positives = 31/142 (21%), Gaps = 16/142 (11%)
Query: 3 NKKEEKKKKKKRRTKKKEKNKNKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKK 62
K ++ + + K N + +R
Sbjct: 342 RKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDD 401
Query: 63 EKNKNKNRKEEKKKKKK----------------RRTKKKEKNKNKSRKEEKKKEAEEEKK 106
E + ++ E K +E + E +
Sbjct: 402 AARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLR 461
Query: 107 KTKNKEKNKNKSRKEEEEKKKE 128
+ ++ R+E E +++
Sbjct: 462 ILGSADRLMEVIREELELVREQ 483
>d1cs8a_ d.3.1.1 (A:) (Pro)cathepsin L {Human (Homo sapiens) [TaxId:
9606]}
Length = 316
Score = 25.7 bits (55), Expect = 9.6
Identities = 17/81 (20%), Positives = 29/81 (35%)
Query: 24 NKSRKEEEEEKRTKKKEKNKKNKNKSRKEEEKKKRTKKKEKNKNKNRKEEKKKKKKRRTK 83
N+ EE R EKN K +E + K + N + E+ ++ +
Sbjct: 20 NRLYGMNEEGWRRAVWEKNMKMIELHNQEYREGKHSFTMAMNAFGDMTSEEFRQVMNGFQ 79
Query: 84 KKEKNKNKSRKEEKKKEAEEE 104
++ K K +E EA
Sbjct: 80 NRKPRKGKVFQEPLFYEAPRS 100
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.310 0.127 0.343
Gapped
Lambda K H
0.267 0.0435 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,443,702
Number of extensions: 77464
Number of successful extensions: 2405
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1538
Number of HSP's successfully gapped: 474
Length of query: 410
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 323
Effective length of database: 1,213,086
Effective search space: 391826778
Effective search space used: 391826778
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 54 (25.3 bits)