Query psy12271
Match_columns 95
No_of_seqs 122 out of 1345
Neff 9.2
Searched_HMMs 46136
Date Fri Aug 16 23:04:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12271.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12271hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2504|consensus 99.4 8.3E-14 1.8E-18 99.7 4.2 71 2-72 134-204 (509)
2 KOG2532|consensus 99.4 1.6E-12 3.5E-17 92.3 5.9 78 5-82 130-224 (466)
3 COG2271 UhpC Sugar phosphate p 99.3 1.3E-12 2.8E-17 91.2 3.2 78 3-80 117-212 (448)
4 TIGR02332 HpaX 4-hydroxyphenyl 99.3 2.3E-11 5E-16 84.6 8.3 71 2-72 95-172 (412)
5 TIGR00894 2A0114euk Na(+)-depe 99.3 2.3E-11 5E-16 85.3 7.3 69 4-72 132-202 (465)
6 PRK10642 proline/glycine betai 99.2 1.3E-10 2.8E-15 82.4 9.2 68 5-72 120-196 (490)
7 TIGR00903 2A0129 major facilit 99.2 1.4E-10 3E-15 80.0 8.1 70 2-72 78-148 (368)
8 TIGR00893 2A0114 d-galactonate 99.1 2.2E-10 4.8E-15 77.0 7.5 70 3-72 82-152 (399)
9 PRK09952 shikimate transporter 99.1 3.8E-10 8.3E-15 79.0 8.7 68 5-72 127-203 (438)
10 PRK10213 nepI ribonucleoside t 99.1 3.8E-10 8.2E-15 78.1 7.8 70 3-72 108-178 (394)
11 PRK12307 putative sialic acid 99.1 4.2E-10 9.1E-15 77.8 7.6 70 3-72 106-176 (426)
12 KOG2533|consensus 99.1 1.2E-10 2.6E-15 83.3 4.7 71 2-72 133-210 (495)
13 PRK11663 regulatory protein Uh 99.1 5.2E-10 1.1E-14 78.2 7.3 68 5-72 113-181 (434)
14 PRK03545 putative arabinose tr 99.1 9.7E-10 2.1E-14 75.5 8.3 70 3-72 97-167 (390)
15 COG2814 AraJ Arabinose efflux 99.1 5.3E-10 1.1E-14 78.0 6.9 72 1-72 99-171 (394)
16 PRK10406 alpha-ketoglutarate t 99.1 1.2E-09 2.6E-14 76.3 8.6 68 5-72 126-202 (432)
17 TIGR00890 2A0111 Oxalate/Forma 99.1 4.6E-10 9.9E-15 75.5 6.2 69 4-72 92-160 (377)
18 TIGR00891 2A0112 putative sial 99.1 2.1E-09 4.4E-14 73.2 9.3 70 3-72 100-172 (405)
19 PRK10077 xylE D-xylose transpo 99.0 1.2E-09 2.6E-14 76.6 7.9 69 4-72 121-198 (479)
20 TIGR00892 2A0113 monocarboxyla 99.0 8.6E-10 1.9E-14 77.7 7.2 70 3-72 108-177 (455)
21 TIGR00887 2A0109 phosphate:H+ 99.0 2E-09 4.4E-14 76.5 8.8 60 3-62 115-175 (502)
22 PRK14995 methyl viologen resis 99.0 1.7E-09 3.8E-14 76.8 7.1 71 2-72 93-165 (495)
23 PRK15075 citrate-proton sympor 99.0 3.9E-09 8.4E-14 73.7 8.2 68 5-72 119-195 (434)
24 PRK09705 cynX putative cyanate 99.0 3.7E-09 7.9E-14 73.1 7.5 71 2-72 96-167 (393)
25 PRK03893 putative sialic acid 98.9 4.8E-09 1E-13 73.9 7.8 70 3-72 108-178 (496)
26 PF07690 MFS_1: Major Facilita 98.9 7.4E-10 1.6E-14 74.0 3.6 68 5-72 87-155 (352)
27 TIGR00900 2A0121 H+ Antiporter 98.9 4.2E-09 9.1E-14 70.6 7.1 70 3-72 92-162 (365)
28 TIGR00710 efflux_Bcr_CflA drug 98.9 7E-09 1.5E-13 70.4 7.7 70 3-72 93-163 (385)
29 PRK10091 MFS transport protein 98.9 5.7E-09 1.2E-13 71.7 7.3 70 3-72 91-161 (382)
30 TIGR00712 glpT glycerol-3-phos 98.9 6.9E-09 1.5E-13 72.6 7.4 68 5-72 120-189 (438)
31 PRK11551 putative 3-hydroxyphe 98.9 9E-09 2E-13 70.8 7.7 70 3-72 103-173 (406)
32 PRK15403 multidrug efflux syst 98.9 1.1E-08 2.3E-13 71.4 7.9 71 2-72 103-174 (413)
33 TIGR00806 rfc RFC reduced fola 98.9 5.2E-09 1.1E-13 74.8 6.2 68 3-72 115-183 (511)
34 PRK09556 uhpT sugar phosphate 98.9 1.1E-09 2.4E-14 77.1 2.8 70 3-72 122-195 (467)
35 PRK12382 putative transporter; 98.9 7.7E-09 1.7E-13 71.0 6.6 69 4-72 113-182 (392)
36 TIGR00879 SP MFS transporter, 98.8 8.8E-09 1.9E-13 71.0 6.2 68 5-72 129-200 (481)
37 TIGR00711 efflux_EmrB drug res 98.8 4.9E-09 1.1E-13 73.4 5.0 71 2-72 89-160 (485)
38 PRK11102 bicyclomycin/multidru 98.8 2.6E-08 5.6E-13 67.8 8.0 70 3-72 79-149 (377)
39 TIGR01299 synapt_SV2 synaptic 98.8 2.5E-08 5.3E-13 74.5 8.0 64 3-66 255-319 (742)
40 PRK05122 major facilitator sup 98.8 1.7E-08 3.7E-13 69.3 6.8 68 5-72 114-182 (399)
41 PRK03699 putative transporter; 98.8 3E-08 6.5E-13 68.4 7.5 70 3-72 95-166 (394)
42 TIGR00883 2A0106 metabolite-pr 98.8 5.2E-08 1.1E-12 65.8 8.2 68 5-72 98-174 (394)
43 TIGR00895 2A0115 benzoate tran 98.8 2.5E-08 5.3E-13 67.6 6.6 70 3-72 105-175 (398)
44 PRK10504 putative transporter; 98.8 3.6E-08 7.8E-13 69.2 7.3 70 3-72 98-168 (471)
45 PRK10473 multidrug efflux syst 98.8 6.6E-08 1.4E-12 66.4 8.2 69 4-72 92-161 (392)
46 KOG1330|consensus 98.7 4.3E-10 9.3E-15 79.5 -2.9 69 4-72 122-192 (493)
47 TIGR00881 2A0104 phosphoglycer 98.7 7E-09 1.5E-13 69.7 2.8 70 3-72 83-154 (379)
48 PRK11273 glpT sn-glycerol-3-ph 98.7 7.2E-08 1.6E-12 67.8 7.9 69 4-72 121-191 (452)
49 PTZ00207 hypothetical protein; 98.7 5.7E-08 1.2E-12 71.0 7.2 67 5-72 122-188 (591)
50 TIGR00898 2A0119 cation transp 98.7 1.1E-07 2.4E-12 67.3 8.0 68 2-72 179-247 (505)
51 PRK10207 dipeptide/tripeptide 98.7 9.5E-08 2E-12 68.3 7.0 67 6-72 108-177 (489)
52 PLN00028 nitrate transmembrane 98.7 1.6E-07 3.4E-12 66.7 7.9 68 4-72 125-202 (476)
53 TIGR00805 oat sodium-independe 98.7 6.7E-08 1.4E-12 71.1 6.2 63 3-65 172-235 (633)
54 PRK09874 drug efflux system pr 98.7 3E-07 6.4E-12 63.1 9.0 69 3-72 107-176 (408)
55 PRK15402 multidrug efflux syst 98.7 1.5E-07 3.3E-12 64.9 7.5 70 3-72 101-171 (406)
56 TIGR00901 2A0125 AmpG-related 98.6 2.2E-07 4.7E-12 63.0 8.0 64 9-72 89-161 (356)
57 PRK06814 acylglycerophosphoeth 98.6 9.3E-08 2E-12 73.6 6.8 70 3-72 108-178 (1140)
58 PRK11043 putative transporter; 98.6 3.1E-07 6.7E-12 63.3 8.5 70 3-72 94-164 (401)
59 TIGR00897 2A0118 polyol permea 98.6 1.6E-07 3.5E-12 65.0 6.9 66 3-68 105-172 (402)
60 TIGR00880 2_A_01_02 Multidrug 98.6 2.5E-07 5.5E-12 54.0 6.7 68 5-72 53-121 (141)
61 PRK11652 emrD multidrug resist 98.6 3.5E-07 7.6E-12 62.9 8.3 70 3-72 96-166 (394)
62 cd06174 MFS The Major Facilita 98.6 2.8E-07 6E-12 61.2 7.5 71 2-72 86-157 (352)
63 PRK11646 multidrug resistance 98.6 2.4E-07 5.1E-12 64.4 7.3 68 4-72 100-168 (400)
64 TIGR00886 2A0108 nitrite extru 98.6 2.6E-07 5.6E-12 62.5 6.9 68 3-71 91-169 (366)
65 TIGR00896 CynX cyanate transpo 98.6 3.2E-07 6.9E-12 62.3 7.3 69 4-72 88-158 (355)
66 TIGR00902 2A0127 phenyl propri 98.6 1.9E-07 4E-12 64.3 5.9 68 4-72 95-162 (382)
67 TIGR00924 yjdL_sub1_fam amino 98.6 2.7E-07 5.8E-12 65.7 6.8 68 5-72 104-175 (475)
68 KOG0255|consensus 98.6 4E-07 8.7E-12 65.0 7.7 68 2-72 170-238 (521)
69 PRK05122 major facilitator sup 98.5 5.3E-07 1.1E-11 62.0 7.9 67 6-72 305-372 (399)
70 PRK10489 enterobactin exporter 98.5 3.2E-07 6.9E-12 63.6 6.8 69 4-72 111-180 (417)
71 PRK15034 nitrate/nitrite trans 98.5 7.5E-07 1.6E-11 63.6 8.3 57 2-59 127-184 (462)
72 TIGR00892 2A0113 monocarboxyla 98.5 8E-08 1.7E-12 67.8 3.3 68 5-72 335-404 (455)
73 PRK11128 putative 3-phenylprop 98.5 3E-07 6.5E-12 63.2 5.9 67 5-72 96-162 (382)
74 PRK09584 tppB putative tripept 98.5 5.5E-07 1.2E-11 64.5 7.3 68 5-72 114-184 (500)
75 TIGR00899 2A0120 sugar efflux 98.5 7.3E-07 1.6E-11 60.4 7.3 68 5-72 89-159 (375)
76 PRK11902 ampG muropeptide tran 98.5 1.3E-06 2.7E-11 60.5 8.3 66 7-72 98-165 (402)
77 PRK11010 ampG muropeptide tran 98.5 9.7E-07 2.1E-11 63.0 7.8 68 5-72 109-178 (491)
78 PRK12382 putative transporter; 98.4 2.1E-06 4.6E-11 58.9 7.6 67 6-72 305-372 (392)
79 COG2223 NarK Nitrate/nitrite t 98.4 8.3E-07 1.8E-11 62.3 4.9 66 5-72 107-176 (417)
80 PRK15011 sugar efflux transpor 98.3 2.7E-06 5.9E-11 58.8 7.3 62 11-72 113-177 (393)
81 KOG3764|consensus 98.3 2.9E-07 6.3E-12 64.6 2.4 72 2-73 158-231 (464)
82 PRK11195 lysophospholipid tran 98.3 2.6E-06 5.5E-11 59.1 7.0 65 7-72 92-157 (393)
83 TIGR00889 2A0110 nucleoside tr 98.3 3.7E-06 7.9E-11 58.9 7.3 67 6-72 311-385 (418)
84 TIGR00885 fucP L-fucose:H+ sym 98.3 3.8E-06 8.3E-11 58.7 7.1 61 2-62 93-154 (410)
85 PRK10489 enterobactin exporter 98.3 4E-06 8.6E-11 58.2 6.5 66 7-72 316-382 (417)
86 TIGR00890 2A0111 Oxalate/Forma 98.2 7.7E-06 1.7E-10 54.9 6.9 65 9-73 301-366 (377)
87 TIGR00899 2A0120 sugar efflux 98.2 1E-05 2.3E-10 54.8 6.8 65 8-72 293-357 (375)
88 PRK09528 lacY galactoside perm 98.1 5.3E-06 1.2E-10 57.7 5.4 68 5-72 317-386 (420)
89 PRK08633 2-acyl-glycerophospho 98.1 1.1E-05 2.4E-10 62.1 7.5 62 3-64 103-165 (1146)
90 PRK10054 putative transporter; 98.1 1.4E-05 3E-10 55.5 7.3 63 9-72 102-165 (395)
91 TIGR00881 2A0104 phosphoglycer 98.1 9.1E-06 2E-10 54.6 5.8 63 9-71 316-379 (379)
92 TIGR01272 gluP glucose/galacto 98.1 2E-05 4.3E-10 53.4 6.8 71 2-72 9-96 (310)
93 PRK03545 putative arabinose tr 98.1 4.1E-05 8.9E-10 52.7 8.5 67 6-72 297-363 (390)
94 PRK15011 sugar efflux transpor 98.1 2.1E-05 4.6E-10 54.3 7.0 64 9-72 311-374 (393)
95 cd06174 MFS The Major Facilita 98.0 2.8E-05 6.1E-10 51.6 7.1 68 5-72 267-335 (352)
96 PRK10133 L-fucose transporter; 98.0 2.9E-05 6.2E-10 54.8 7.4 61 2-62 116-177 (438)
97 PRK03633 putative MFS family t 98.0 2.2E-05 4.7E-10 54.0 6.1 63 2-64 93-156 (381)
98 PRK15462 dipeptide/tripeptide 98.0 2.8E-05 6E-10 56.1 6.6 61 12-72 109-172 (493)
99 TIGR00897 2A0118 polyol permea 98.0 5.8E-05 1.2E-09 52.3 7.9 66 7-73 320-385 (402)
100 PRK09874 drug efflux system pr 98.0 2.2E-05 4.8E-10 53.9 5.6 67 6-72 314-381 (408)
101 PF00083 Sugar_tr: Sugar (and 97.9 1.6E-07 3.4E-12 65.6 -5.5 71 2-72 101-175 (451)
102 KOG0254|consensus 97.9 5.6E-05 1.2E-09 54.3 6.8 84 2-86 141-238 (513)
103 TIGR00891 2A0112 putative sial 97.9 9.1E-05 2E-09 50.5 7.3 63 11-73 336-400 (405)
104 TIGR00900 2A0121 H+ Antiporter 97.8 9.2E-05 2E-09 49.6 6.7 62 5-66 303-365 (365)
105 TIGR00883 2A0106 metabolite-pr 97.8 3.2E-05 7E-10 52.2 4.5 67 7-73 316-385 (394)
106 TIGR00893 2A0114 d-galactonate 97.8 0.00012 2.6E-09 49.2 6.6 53 20-72 328-382 (399)
107 PRK11663 regulatory protein Uh 97.8 0.00011 2.4E-09 51.5 6.6 48 25-72 359-407 (434)
108 PRK09556 uhpT sugar phosphate 97.8 0.00014 2.9E-09 51.5 7.0 47 26-72 372-432 (467)
109 PRK03633 putative MFS family t 97.7 0.00017 3.6E-09 49.6 7.1 63 10-72 292-355 (381)
110 PRK11273 glpT sn-glycerol-3-ph 97.7 0.00031 6.6E-09 49.5 7.8 47 26-72 370-418 (452)
111 COG2807 CynX Cyanate permease 97.7 0.0002 4.3E-09 50.1 6.5 67 6-72 102-169 (395)
112 PRK10642 proline/glycine betai 97.7 0.00025 5.3E-09 50.6 7.1 64 8-71 347-412 (490)
113 TIGR01299 synapt_SV2 synaptic 97.7 0.00017 3.6E-09 54.4 6.5 59 6-64 651-710 (742)
114 TIGR00879 SP MFS transporter, 97.6 0.00016 3.6E-09 49.9 5.8 51 22-72 402-453 (481)
115 PRK03699 putative transporter; 97.6 0.00035 7.5E-09 48.3 6.8 65 8-72 299-363 (394)
116 PF06609 TRI12: Fungal trichot 97.6 0.00023 4.9E-09 52.6 5.7 70 2-72 130-200 (599)
117 TIGR02718 sider_RhtX_FptX side 97.5 0.0012 2.6E-08 45.5 8.3 57 16-72 110-167 (390)
118 PRK11551 putative 3-hydroxyphe 97.5 0.00052 1.1E-08 47.3 6.4 65 8-72 313-379 (406)
119 TIGR00902 2A0127 phenyl propri 97.5 0.00076 1.6E-08 46.5 7.2 67 4-72 294-362 (382)
120 KOG0569|consensus 97.5 0.00053 1.1E-08 49.5 6.4 71 2-72 115-188 (485)
121 PRK10077 xylE D-xylose transpo 97.4 0.0013 2.8E-08 46.3 8.1 59 14-72 374-440 (479)
122 TIGR00924 yjdL_sub1_fam amino 97.4 0.0008 1.7E-08 48.1 7.0 70 3-72 381-451 (475)
123 PRK03893 putative sialic acid 97.4 0.0005 1.1E-08 48.6 5.8 52 21-72 384-436 (496)
124 PF03825 Nuc_H_symport: Nucleo 97.4 0.001 2.2E-08 46.9 7.1 61 11-71 309-371 (400)
125 TIGR01272 gluP glucose/galacto 97.3 0.00065 1.4E-08 46.0 5.6 61 11-72 238-298 (310)
126 TIGR00895 2A0115 benzoate tran 97.3 0.00053 1.1E-08 46.5 5.1 56 6-61 341-397 (398)
127 PRK10213 nepI ribonucleoside t 97.3 0.0018 3.9E-08 45.0 7.7 65 8-72 310-374 (394)
128 TIGR00882 2A0105 oligosacchari 97.3 0.00059 1.3E-08 47.1 4.9 61 10-72 106-166 (396)
129 PRK12307 putative sialic acid 97.2 0.0024 5.1E-08 44.3 7.6 49 22-70 340-389 (426)
130 TIGR00894 2A0114euk Na(+)-depe 97.2 0.00056 1.2E-08 48.2 4.4 59 14-72 372-433 (465)
131 PRK10504 putative transporter; 97.2 0.002 4.3E-08 45.4 7.1 60 9-68 359-419 (471)
132 PRK15402 multidrug efflux syst 97.1 0.0026 5.6E-08 44.0 6.9 62 8-69 314-375 (406)
133 TIGR02718 sider_RhtX_FptX side 97.1 0.0037 7.9E-08 43.1 7.5 61 12-72 312-374 (390)
134 PF06813 Nodulin-like: Nodulin 97.1 0.0015 3.3E-08 43.4 5.4 56 9-64 102-157 (250)
135 PF05977 MFS_3: Transmembrane 97.1 0.0022 4.8E-08 46.7 6.5 68 5-72 105-173 (524)
136 TIGR00792 gph sugar (Glycoside 97.1 0.0021 4.5E-08 44.7 6.2 67 6-72 102-177 (437)
137 KOG0253|consensus 97.1 0.0026 5.7E-08 45.2 6.5 69 2-72 165-234 (528)
138 PRK11646 multidrug resistance 97.1 0.00076 1.6E-08 46.9 3.9 57 9-65 303-360 (400)
139 PRK11010 ampG muropeptide tran 97.1 0.0042 9.1E-08 44.6 7.6 57 16-72 329-386 (491)
140 PRK09952 shikimate transporter 97.1 0.0045 9.8E-08 43.6 7.6 62 11-72 351-416 (438)
141 PRK09528 lacY galactoside perm 97.1 0.0016 3.6E-08 45.3 5.3 40 32-72 135-174 (420)
142 PRK11128 putative 3-phenylprop 97.0 0.0043 9.3E-08 42.7 7.0 65 4-68 294-359 (382)
143 KOG2615|consensus 97.0 0.00037 8E-09 49.2 1.7 61 2-63 120-181 (451)
144 PRK09705 cynX putative cyanate 97.0 0.0042 9.1E-08 43.1 6.7 62 11-72 300-364 (393)
145 TIGR02332 HpaX 4-hydroxyphenyl 97.0 0.0015 3.3E-08 45.6 4.5 48 26-73 356-405 (412)
146 TIGR00792 gph sugar (Glycoside 96.9 0.011 2.4E-07 41.1 8.7 63 6-68 314-384 (437)
147 TIGR00882 2A0105 oligosacchari 96.9 0.0027 5.8E-08 43.8 5.3 67 7-73 311-379 (396)
148 COG0477 ProP Permeases of the 96.9 0.011 2.3E-07 37.6 7.7 70 3-72 94-168 (338)
149 COG3104 PTR2 Dipeptide/tripept 96.8 0.00062 1.3E-08 49.2 1.8 67 5-72 120-189 (498)
150 PF05977 MFS_3: Transmembrane 96.8 0.0068 1.5E-07 44.2 7.1 66 7-72 311-377 (524)
151 PF11700 ATG22: Vacuole efflux 96.8 0.0083 1.8E-07 43.3 7.5 67 6-72 383-451 (477)
152 PLN00028 nitrate transmembrane 96.8 0.0014 3.1E-08 46.7 3.4 49 23-72 368-416 (476)
153 TIGR00710 efflux_Bcr_CflA drug 96.8 0.0064 1.4E-07 41.2 6.4 66 7-72 304-369 (385)
154 PRK06814 acylglycerophosphoeth 96.8 0.0054 1.2E-07 47.8 6.5 65 8-72 339-405 (1140)
155 TIGR00711 efflux_EmrB drug res 96.7 0.017 3.7E-07 40.6 8.3 59 9-67 354-413 (485)
156 PRK11652 emrD multidrug resist 96.7 0.0086 1.9E-07 41.2 6.5 62 8-69 304-365 (394)
157 PRK10054 putative transporter; 96.7 0.0081 1.8E-07 41.8 6.3 66 6-72 301-367 (395)
158 PF07690 MFS_1: Major Facilita 96.6 0.0057 1.2E-07 40.8 5.2 51 5-55 301-352 (352)
159 PRK11043 putative transporter; 96.5 0.016 3.6E-07 39.9 7.1 54 11-64 304-357 (401)
160 PRK15075 citrate-proton sympor 96.5 0.0076 1.7E-07 42.3 5.4 58 11-68 339-398 (434)
161 TIGR00898 2A0119 cation transp 96.4 0.011 2.4E-07 42.0 5.9 59 11-71 418-477 (505)
162 PRK11902 ampG muropeptide tran 96.4 0.021 4.5E-07 39.6 7.0 59 11-72 315-373 (402)
163 TIGR00712 glpT glycerol-3-phos 96.4 0.0069 1.5E-07 42.5 4.7 47 26-72 368-416 (438)
164 PRK10133 L-fucose transporter; 96.4 0.0074 1.6E-07 42.7 4.8 63 9-72 353-416 (438)
165 PRK09584 tppB putative tripept 96.4 0.014 3.1E-07 42.1 6.2 56 5-60 384-440 (500)
166 TIGR00788 fbt folate/biopterin 96.3 0.0068 1.5E-07 43.4 4.3 59 8-66 356-415 (468)
167 TIGR00896 CynX cyanate transpo 96.3 0.022 4.8E-07 38.6 6.5 57 10-66 292-350 (355)
168 KOG3626|consensus 96.3 0.011 2.3E-07 44.8 5.3 63 3-65 237-300 (735)
169 TIGR00887 2A0109 phosphate:H+ 96.3 0.025 5.4E-07 40.5 6.9 43 21-63 410-453 (502)
170 PF05978 UNC-93: Ion channel r 96.3 0.029 6.2E-07 34.9 6.3 59 3-61 89-148 (156)
171 PF00854 PTR2: POT family; In 96.2 0.014 3E-07 40.4 5.4 67 5-72 36-106 (372)
172 TIGR00903 2A0129 major facilit 96.2 0.017 3.7E-07 40.1 5.8 60 11-72 288-348 (368)
173 PRK14995 methyl viologen resis 96.2 0.022 4.8E-07 40.8 6.4 58 7-64 355-413 (495)
174 PF03209 PUCC: PUCC protein; 96.1 0.033 7.1E-07 39.6 6.7 59 10-68 96-155 (403)
175 TIGR00788 fbt folate/biopterin 96.1 0.0098 2.1E-07 42.5 4.0 68 5-72 122-192 (468)
176 PRK08633 2-acyl-glycerophospho 96.0 0.04 8.7E-07 42.9 7.5 57 6-62 325-382 (1146)
177 PF03137 OATP: Organic Anion T 96.0 0.0016 3.5E-08 47.6 -0.4 60 4-63 142-202 (539)
178 PF01306 LacY_symp: LacY proto 96.0 0.039 8.4E-07 39.4 6.5 70 3-72 312-383 (412)
179 PRK10091 MFS transport protein 95.9 0.061 1.3E-06 37.0 7.4 60 11-72 297-359 (382)
180 PRK10406 alpha-ketoglutarate t 95.9 0.047 1E-06 38.3 6.9 49 22-71 355-406 (432)
181 PRK10207 dipeptide/tripeptide 95.9 0.036 7.8E-07 40.0 6.3 56 6-61 382-438 (489)
182 KOG2504|consensus 95.9 0.0063 1.4E-07 44.3 2.4 70 3-72 388-459 (509)
183 COG2814 AraJ Arabinose efflux 95.8 0.085 1.8E-06 37.5 7.6 62 11-72 308-369 (394)
184 COG2807 CynX Cyanate permease 95.7 0.061 1.3E-06 38.0 6.4 63 10-72 303-368 (395)
185 PRK15034 nitrate/nitrite trans 95.4 0.061 1.3E-06 38.9 5.9 62 11-72 353-437 (462)
186 COG0738 FucP Fucose permease [ 95.4 0.07 1.5E-06 38.1 6.0 61 3-63 104-165 (422)
187 PRK11195 lysophospholipid tran 95.1 0.15 3.3E-06 35.4 7.1 64 8-72 298-363 (393)
188 PRK09848 glucuronide transport 95.1 0.13 2.9E-06 36.1 6.9 61 7-67 323-391 (448)
189 TIGR01301 GPH_sucrose GPH fami 95.0 0.12 2.5E-06 37.6 6.4 48 14-61 125-175 (477)
190 COG2223 NarK Nitrate/nitrite t 94.9 0.062 1.3E-06 38.3 4.7 60 13-72 324-384 (417)
191 PRK09669 putative symporter Ya 94.9 0.17 3.6E-06 35.7 6.8 63 6-68 322-392 (444)
192 TIGR00885 fucP L-fucose:H+ sym 94.7 0.079 1.7E-06 37.2 4.9 62 10-72 328-395 (410)
193 PRK15403 multidrug efflux syst 94.5 0.29 6.4E-06 34.3 7.4 55 8-64 317-373 (413)
194 COG2271 UhpC Sugar phosphate p 94.3 0.024 5.1E-07 40.6 1.4 68 5-72 348-417 (448)
195 PRK15462 dipeptide/tripeptide 94.2 0.23 5E-06 36.2 6.3 56 6-61 380-437 (493)
196 KOG2563|consensus 93.6 0.1 2.3E-06 37.7 3.6 59 6-64 143-202 (480)
197 PRK09669 putative symporter Ya 93.6 0.61 1.3E-05 32.9 7.4 64 9-72 115-187 (444)
198 PF13347 MFS_2: MFS/sugar tran 93.6 0.25 5.5E-06 34.6 5.5 68 2-69 314-389 (428)
199 COG2270 Permeases of the major 93.5 0.17 3.8E-06 36.3 4.5 62 5-66 343-405 (438)
200 KOG0252|consensus 93.5 0.026 5.7E-07 41.0 0.4 56 6-61 147-203 (538)
201 PF02487 CLN3: CLN3 protein; 93.4 0.38 8.2E-06 34.3 6.0 56 7-62 339-395 (402)
202 KOG2325|consensus 93.2 0.29 6.2E-06 35.8 5.4 60 3-62 130-189 (488)
203 TIGR00901 2A0125 AmpG-related 92.9 0.2 4.2E-06 34.0 4.1 40 9-48 315-355 (356)
204 KOG3762|consensus 92.8 0.11 2.3E-06 38.6 2.7 69 4-72 460-530 (618)
205 PRK10429 melibiose:sodium symp 92.5 0.75 1.6E-05 32.8 6.7 64 5-68 326-397 (473)
206 KOG0569|consensus 92.4 2.1 4.6E-05 31.4 8.8 70 12-82 376-459 (485)
207 TIGR00926 2A1704 Peptide:H+ sy 92.1 1 2.2E-05 34.1 7.2 62 11-72 93-165 (654)
208 PF13347 MFS_2: MFS/sugar tran 91.4 0.68 1.5E-05 32.5 5.4 66 7-72 107-181 (428)
209 KOG2532|consensus 91.1 0.29 6.3E-06 35.4 3.3 41 32-72 387-430 (466)
210 KOG4686|consensus 90.9 0.034 7.4E-07 38.7 -1.5 61 3-63 136-197 (459)
211 KOG0252|consensus 90.7 0.25 5.4E-06 36.2 2.6 49 25-73 428-482 (538)
212 COG2211 MelB Na+/melibiose sym 90.5 1.5 3.3E-05 32.0 6.4 57 7-63 116-174 (467)
213 COG0738 FucP Fucose permease [ 90.4 0.23 4.9E-06 35.6 2.2 61 11-72 332-392 (422)
214 PF03209 PUCC: PUCC protein; 90.3 1.9 4.1E-05 30.9 6.6 59 5-63 303-362 (403)
215 TIGR01301 GPH_sucrose GPH fami 89.5 1.4 3E-05 32.1 5.7 59 8-66 385-446 (477)
216 PRK11462 putative transporter; 89.0 3.6 7.9E-05 29.4 7.5 56 9-64 115-172 (460)
217 PF03092 BT1: BT1 family; Int 87.8 2.2 4.7E-05 30.5 5.7 57 11-67 326-383 (433)
218 TIGR00889 2A0110 nucleoside tr 87.5 1.9 4.2E-05 30.3 5.3 55 7-69 96-161 (418)
219 PTZ00207 hypothetical protein; 87.3 2.7 5.8E-05 31.6 6.1 58 5-63 455-513 (591)
220 KOG2615|consensus 87.2 1.1 2.4E-05 32.2 3.9 51 12-62 361-412 (451)
221 KOG3098|consensus 85.7 1.3 2.9E-05 32.2 3.7 57 4-60 103-160 (461)
222 TIGR00886 2A0108 nitrite extru 85.2 1 2.2E-05 30.3 2.9 39 12-50 327-365 (366)
223 PRK11102 bicyclomycin/multidru 85.0 4.8 0.00011 27.3 6.1 42 17-58 301-343 (377)
224 PF12597 DUF3767: Protein of u 84.7 1.6 3.6E-05 25.9 3.2 26 47-72 71-96 (118)
225 PF03092 BT1: BT1 family; Int 84.2 3.5 7.5E-05 29.5 5.2 66 7-72 90-158 (433)
226 KOG1237|consensus 83.5 5.9 0.00013 29.7 6.3 61 5-65 460-521 (571)
227 KOG4686|consensus 83.5 1.2 2.6E-05 31.3 2.5 56 11-66 360-416 (459)
228 KOG2816|consensus 82.6 4.5 9.8E-05 29.4 5.3 48 16-63 343-391 (463)
229 PF06609 TRI12: Fungal trichot 81.7 3.9 8.4E-05 30.8 4.8 56 7-62 409-465 (599)
230 PRK10429 melibiose:sodium symp 81.5 8.9 0.00019 27.4 6.5 51 9-59 112-164 (473)
231 PF01306 LacY_symp: LacY proto 81.0 3.9 8.4E-05 29.4 4.4 58 14-72 111-171 (412)
232 TIGR00769 AAA ADP/ATP carrier 80.4 12 0.00026 27.4 6.8 62 11-72 274-337 (472)
233 PRK10473 multidrug efflux syst 79.4 8.8 0.00019 26.3 5.8 31 35-69 324-354 (392)
234 PRK03612 spermidine synthase; 78.7 14 0.00031 27.2 6.9 60 9-68 116-176 (521)
235 PRK11462 putative transporter; 77.2 18 0.00038 26.0 6.9 57 11-67 326-390 (460)
236 KOG3764|consensus 76.3 3.2 7E-05 30.1 2.9 37 36-72 401-437 (464)
237 PF02487 CLN3: CLN3 protein; 74.1 5.5 0.00012 28.6 3.6 53 10-67 119-171 (402)
238 KOG0255|consensus 73.1 17 0.00036 26.2 6.0 56 7-62 410-466 (521)
239 KOG2325|consensus 71.7 0.81 1.8E-05 33.5 -1.0 65 8-72 393-458 (488)
240 KOG3098|consensus 71.6 25 0.00055 25.8 6.5 50 5-54 355-404 (461)
241 KOG2816|consensus 71.5 10 0.00022 27.7 4.5 54 19-72 128-182 (463)
242 TIGR00805 oat sodium-independe 65.9 6.5 0.00014 29.6 2.7 59 6-64 521-581 (633)
243 KOG0254|consensus 65.3 50 0.0011 24.0 7.6 45 22-66 414-459 (513)
244 PF03219 TLC: TLC ATP/ADP tran 63.2 58 0.0013 24.1 7.0 47 26-72 305-353 (491)
245 PF12832 MFS_1_like: MFS_1 lik 62.2 23 0.0005 19.0 4.1 45 27-71 22-68 (77)
246 COG3104 PTR2 Dipeptide/tripept 60.7 18 0.00039 26.8 4.1 55 5-59 396-451 (498)
247 PF00083 Sugar_tr: Sugar (and 60.6 0.22 4.7E-06 34.9 -5.6 46 21-66 367-413 (451)
248 PRK12460 2-keto-3-deoxyglucona 60.5 35 0.00076 23.8 5.2 48 16-63 258-305 (312)
249 COG2211 MelB Na+/melibiose sym 59.9 58 0.0013 24.0 6.5 66 3-68 327-400 (467)
250 PRK09848 glucuronide transport 59.2 57 0.0012 23.0 6.3 39 10-48 116-156 (448)
251 PF03219 TLC: TLC ATP/ADP tran 59.1 71 0.0015 23.7 6.9 39 25-63 166-205 (491)
252 PHA02706 hypothetical protein; 57.8 4.4 9.5E-05 20.3 0.4 26 12-37 14-39 (58)
253 PF15192 TMEM213: TMEM213 fami 55.8 10 0.00022 20.7 1.6 25 59-83 46-79 (82)
254 PF07214 DUF1418: Protein of u 55.8 38 0.00082 19.5 4.6 11 22-32 23-33 (96)
255 PF03616 Glt_symporter: Sodium 54.8 40 0.00086 23.9 4.9 31 35-65 156-186 (368)
256 PF11299 DUF3100: Protein of u 53.7 59 0.0013 21.9 5.2 46 11-56 179-224 (241)
257 KOG3626|consensus 52.4 12 0.00026 29.1 2.1 59 6-64 589-649 (735)
258 PF03137 OATP: Organic Anion T 50.9 5.1 0.00011 29.7 0.0 60 5-64 453-514 (539)
259 TIGR00939 2a57 Equilibrative N 46.7 1E+02 0.0022 22.4 6.0 54 5-58 374-428 (437)
260 COG1284 Uncharacterized conser 45.0 36 0.00077 23.4 3.3 44 6-49 117-165 (289)
261 PF02990 EMP70: Endomembrane p 43.9 79 0.0017 23.5 5.2 61 9-69 264-331 (521)
262 PF10225 DUF2215: Uncharacteri 43.1 1E+02 0.0022 20.7 5.5 49 5-56 36-84 (249)
263 COG5336 Uncharacterized protei 39.9 71 0.0015 18.9 3.6 32 34-65 38-69 (116)
264 PF11833 DUF3353: Protein of u 38.2 1.1E+02 0.0024 19.7 6.1 44 20-63 118-166 (194)
265 KOG1237|consensus 37.5 55 0.0012 24.7 3.6 61 12-72 161-228 (571)
266 PF13782 SpoVAB: Stage V sporu 35.0 98 0.0021 18.2 4.4 51 5-56 50-105 (110)
267 COG4721 ABC-type cobalt transp 34.5 1.3E+02 0.0028 19.4 5.3 58 7-72 95-155 (192)
268 PF03839 Sec62: Translocation 34.2 87 0.0019 20.8 3.8 15 9-23 116-130 (224)
269 PF09490 CbtA: Probable cobalt 33.7 96 0.0021 20.6 3.9 41 7-48 75-115 (227)
270 PF06963 FPN1: Ferroportin1 (F 32.9 1.4E+02 0.003 21.8 4.9 37 35-71 146-182 (432)
271 COG2855 Predicted membrane pro 32.7 91 0.002 22.1 3.8 53 10-62 124-179 (334)
272 PF09905 DUF2132: Uncharacteri 32.4 53 0.0012 17.4 2.1 18 55-72 12-29 (64)
273 PF05631 DUF791: Protein of un 32.3 1.9E+02 0.0041 20.7 6.4 66 2-67 120-192 (354)
274 PF06149 DUF969: Protein of un 32.1 1.5E+02 0.0034 19.6 5.6 35 3-37 21-55 (218)
275 PF09726 Macoilin: Transmembra 32.0 2.5E+02 0.0054 22.0 6.6 51 3-53 37-88 (697)
276 PF03601 Cons_hypoth698: Conse 31.9 1E+02 0.0023 21.3 4.0 53 10-62 115-170 (305)
277 PF10953 DUF2754: Protein of u 31.4 13 0.00029 19.4 -0.3 10 73-82 58-67 (70)
278 KOG3880|consensus 31.3 1.2E+02 0.0026 21.8 4.2 49 11-59 350-399 (409)
279 PRK05274 2-keto-3-deoxyglucona 30.9 1.9E+02 0.0041 20.3 5.2 18 16-33 266-283 (326)
280 PF08570 DUF1761: Protein of u 30.8 85 0.0018 18.4 3.1 6 42-47 107-112 (126)
281 PF03474 DMA: DMRTA motif; In 28.8 73 0.0016 15.1 2.0 22 24-45 4-26 (39)
282 PRK05771 V-type ATP synthase s 28.0 2.6E+02 0.0057 21.3 5.9 19 5-23 354-373 (646)
283 PHA03099 epidermal growth fact 27.5 44 0.00095 20.4 1.4 31 4-34 98-128 (139)
284 KOG2533|consensus 27.3 49 0.0011 24.5 1.9 53 20-72 384-439 (495)
285 PF03812 KdgT: 2-keto-3-deoxyg 26.8 2.3E+02 0.005 19.9 4.9 30 34-63 282-311 (314)
286 KOG0253|consensus 26.4 37 0.0008 25.0 1.1 40 19-58 450-490 (528)
287 COG4327 Predicted membrane pro 26.2 1.4E+02 0.003 17.2 3.5 43 30-72 11-55 (101)
288 COG3493 CitS Na+/citrate sympo 26.0 1.2E+02 0.0025 22.2 3.5 37 29-66 194-230 (438)
289 TIGR00681 kdpC K+-transporting 25.4 1.1E+02 0.0024 19.8 3.0 18 18-35 18-36 (187)
290 TIGR00698 conserved hypothetic 25.3 1.2E+02 0.0026 21.4 3.4 52 11-62 122-176 (335)
291 PRK15035 cytochrome bd-II oxid 24.6 1E+02 0.0022 23.2 3.1 25 3-27 384-408 (514)
292 TIGR00769 AAA ADP/ATP carrier 24.4 2E+02 0.0043 21.3 4.5 40 23-62 149-189 (472)
293 PRK13995 potassium-transportin 24.1 1.2E+02 0.0025 19.9 3.0 17 18-34 19-36 (203)
294 PF02669 KdpC: K+-transporting 23.8 70 0.0015 20.7 1.9 21 15-35 16-37 (188)
295 PF13038 DUF3899: Domain of un 22.3 42 0.0009 18.5 0.6 15 64-78 31-45 (92)
296 PF07857 DUF1632: CEO family ( 22.3 1.1E+02 0.0025 20.6 2.8 14 55-68 92-105 (254)
297 PF07274 DUF1440: Protein of u 21.9 1.3E+02 0.0029 18.3 2.8 30 15-44 60-92 (135)
298 COG3071 HemY Uncharacterized e 21.8 95 0.0021 22.5 2.4 35 2-36 2-36 (400)
299 KOG2563|consensus 21.1 1.9E+02 0.0042 21.6 3.9 53 11-63 273-326 (480)
300 PRK10692 hypothetical protein; 21.1 1.8E+02 0.0038 16.5 4.3 28 6-33 7-35 (92)
301 PF14880 COX14: Cytochrome oxi 20.6 1.4E+02 0.003 15.2 4.2 22 29-50 7-29 (59)
302 PF07787 DUF1625: Protein of u 20.5 2.7E+02 0.0058 18.4 4.9 29 4-33 185-213 (248)
303 TIGR00926 2A1704 Peptide:H+ sy 20.4 4.1E+02 0.0089 20.5 5.7 53 9-61 571-624 (654)
304 PHA00727 hypothetical protein 20.4 68 0.0015 21.1 1.4 15 5-19 216-230 (278)
305 PRK14000 potassium-transportin 20.2 1.6E+02 0.0035 19.0 3.0 18 17-34 18-36 (185)
306 TIGR00869 sec62 protein transl 20.0 2.9E+02 0.0062 18.6 5.2 18 6-23 121-138 (232)
No 1
>KOG2504|consensus
Probab=99.44 E-value=8.3e-14 Score=99.66 Aligned_cols=71 Identities=41% Similarity=0.848 Sum_probs=69.1
Q ss_pred chhHHHHHHHHHHhhccccchhHHHHHhhhhccchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271 2 SSHFAFSYGVFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE 72 (95)
Q Consensus 2 ~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~ 72 (95)
.|++|++++++.|+|.|+.+.++..++..||+|||++|+|+..+|.++|.++.|++..++.+.+|||+.++
T Consensus 134 i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l 204 (509)
T KOG2504|consen 134 LWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEKKRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALL 204 (509)
T ss_pred HHHHHHHHHHHhhccchhhhcchhhhhhhHhHHHHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999887
No 2
>KOG2532|consensus
Probab=99.35 E-value=1.6e-12 Score=92.26 Aligned_cols=78 Identities=23% Similarity=0.287 Sum_probs=71.2
Q ss_pred HHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhh-cChHHhhH----------
Q psy12271 5 FAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLES-YGYRRDTE---------- 72 (95)
Q Consensus 5 ~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~-~gw~~~~~---------- 72 (95)
.++..|+++|+++|..+|+...+.++|.| ++|++..++..++..+|+++..|+.+++.+. +||+++|+
T Consensus 130 ~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~ 209 (466)
T KOG2532|consen 130 LLLVLRFLQGLGQGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWF 209 (466)
T ss_pred hhHHHHHHhHHHHhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHH
Confidence 45778899999999999999999999998 6999999999999999999999999999999 99999998
Q ss_pred -----HhccCccchh
Q psy12271 73 -----KVREKGEEEE 82 (95)
Q Consensus 73 -----~~~~~p~~~~ 82 (95)
+.+|+|++.+
T Consensus 210 ~~w~~~~~d~P~~h~ 224 (466)
T KOG2532|consen 210 ILWFLFYSDSPSKHP 224 (466)
T ss_pred HHHHHHhcCCcccCC
Confidence 4567887743
No 3
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=99.31 E-value=1.3e-12 Score=91.22 Aligned_cols=78 Identities=21% Similarity=0.270 Sum_probs=71.1
Q ss_pred hhHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHH--HHHHhhcChHHhhH-------
Q psy12271 3 SHFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFL--RYLLESYGYRRDTE------- 72 (95)
Q Consensus 3 ~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~--~~l~~~~gw~~~~~------- 72 (95)
..++.+.-++.|..||...|++...+++||+ ++||+..+++++++++|..+.+++. +++..+++||..|+
T Consensus 117 ~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiai 196 (448)
T COG2271 117 LFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAI 196 (448)
T ss_pred HHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence 4556667789999999999999999999998 5999999999999999999999999 99999999999997
Q ss_pred --------HhccCccc
Q psy12271 73 --------KVREKGEE 80 (95)
Q Consensus 73 --------~~~~~p~~ 80 (95)
.+||+|++
T Consensus 197 ival~~~~~~rd~Pqs 212 (448)
T COG2271 197 IVALILLFLLRDRPQS 212 (448)
T ss_pred HHHHHHHHHhCCCccc
Confidence 56899987
No 4
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=99.28 E-value=2.3e-11 Score=84.56 Aligned_cols=71 Identities=17% Similarity=0.215 Sum_probs=62.3
Q ss_pred chhHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHh------hcChHHhhH
Q psy12271 2 SSHFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLE------SYGYRRDTE 72 (95)
Q Consensus 2 ~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~------~~gw~~~~~ 72 (95)
++..++..+++.|++.+...+....++++|+| ++|+++++++..+.++|..+++++.+++.+ .+|||+.|.
T Consensus 95 ~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~ 172 (412)
T TIGR02332 95 GPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFL 172 (412)
T ss_pred CHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHH
Confidence 34456667899999999999999899999998 589999999999999999999999998874 369999987
No 5
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=99.26 E-value=2.3e-11 Score=85.31 Aligned_cols=69 Identities=25% Similarity=0.331 Sum_probs=63.2
Q ss_pred hHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhc-ChHHhhH
Q psy12271 4 HFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESY-GYRRDTE 72 (95)
Q Consensus 4 ~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~-gw~~~~~ 72 (95)
..++..++++|++.+..++....++++|+| ++|++++++...+..+|..+++++.+++.+.+ |||+.|+
T Consensus 132 ~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~ 202 (465)
T TIGR00894 132 ALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFY 202 (465)
T ss_pred hHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehh
Confidence 346677899999999999999999999998 69999999999999999999999999999984 9998776
No 6
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=99.21 E-value=1.3e-10 Score=82.41 Aligned_cols=68 Identities=16% Similarity=0.206 Sum_probs=58.3
Q ss_pred HHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHH--------hhcChHHhhH
Q psy12271 5 FAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLL--------ESYGYRRDTE 72 (95)
Q Consensus 5 ~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~--------~~~gw~~~~~ 72 (95)
+++..++++|++.|..+++...++++|+| ++||++.++...+..+|..+++.+...+. .++|||+.|+
T Consensus 120 ~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~ 196 (490)
T PRK10642 120 LLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFF 196 (490)
T ss_pred HHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHH
Confidence 47778999999999999999999999998 69999999999888888888776655443 3689999887
No 7
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=99.18 E-value=1.4e-10 Score=80.01 Aligned_cols=70 Identities=13% Similarity=0.081 Sum_probs=61.5
Q ss_pred chhHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271 2 SSHFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE 72 (95)
Q Consensus 2 ~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~ 72 (95)
++..++..++++|+|++. +++....+++|+| ++|++++++...+..+|..+++++...+.+++|||+.|.
T Consensus 78 ~~~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~ 148 (368)
T TIGR00903 78 NYEWLLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLII 148 (368)
T ss_pred cHHHHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHH
Confidence 355677888999999985 5666667789998 699999999999999999999999999999999999886
No 8
>TIGR00893 2A0114 d-galactonate transporter.
Probab=99.14 E-value=2.2e-10 Score=77.05 Aligned_cols=70 Identities=26% Similarity=0.352 Sum_probs=63.9
Q ss_pred hhHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271 3 SHFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE 72 (95)
Q Consensus 3 ~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~ 72 (95)
+..++..+++.|++.+...++...++.+++| ++|++++++......+|..+++++.+.+.+.++||+.|.
T Consensus 82 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~ 152 (399)
T TIGR00893 82 YVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFI 152 (399)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHH
Confidence 4456667799999999999999999999998 599999999999999999999999999999999999886
No 9
>PRK09952 shikimate transporter; Provisional
Probab=99.14 E-value=3.8e-10 Score=79.04 Aligned_cols=68 Identities=10% Similarity=0.172 Sum_probs=60.1
Q ss_pred HHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHh--------hcChHHhhH
Q psy12271 5 FAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLE--------SYGYRRDTE 72 (95)
Q Consensus 5 ~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~--------~~gw~~~~~ 72 (95)
+++..|+++|++.|..++....++++++| ++|++..+....+..+|..++..+...+.. .+|||..|.
T Consensus 127 ~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~ 203 (438)
T PRK09952 127 LLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFL 203 (438)
T ss_pred HHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHH
Confidence 46678899999999999999999999998 599999999999999999999888776653 589999887
No 10
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=99.12 E-value=3.8e-10 Score=78.11 Aligned_cols=70 Identities=11% Similarity=0.125 Sum_probs=63.7
Q ss_pred hhHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271 3 SHFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE 72 (95)
Q Consensus 3 ~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~ 72 (95)
...++..+++.|++.+...+....++.+++| ++|++++++...+.++|..+++++.+.+.+.+|||+.|+
T Consensus 108 ~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~ 178 (394)
T PRK10213 108 FSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFN 178 (394)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHH
Confidence 4455667799999999999999999999998 699999999999999999999999999999999999887
No 11
>PRK12307 putative sialic acid transporter; Provisional
Probab=99.10 E-value=4.2e-10 Score=77.81 Aligned_cols=70 Identities=19% Similarity=0.280 Sum_probs=63.2
Q ss_pred hhHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271 3 SHFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE 72 (95)
Q Consensus 3 ~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~ 72 (95)
+..++..+++.|++.+..++....++.+++| ++|++++++...+..+|.++++.+.+.+.+.+|||+.|.
T Consensus 106 ~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~ 176 (426)
T PRK12307 106 VIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFF 176 (426)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHH
Confidence 3456667899999999999999999999998 589999999999999999999999999999999999886
No 12
>KOG2533|consensus
Probab=99.09 E-value=1.2e-10 Score=83.32 Aligned_cols=71 Identities=23% Similarity=0.235 Sum_probs=64.5
Q ss_pred chhHHHHHHHHHHhhccccchhHHHHHhhhhcc-chHHHHHHHHHhhHHHHHHHHHHHHHHH------hhcChHHhhH
Q psy12271 2 SSHFAFSYGVFVGIGAGLSFPPGIFIVTSYFLK-YRGLANGIAISGSALGSIFLPPFLRYLL------ESYGYRRDTE 72 (95)
Q Consensus 2 ~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~~-~rg~a~gi~~~~~~~g~~~~~~~~~~l~------~~~gw~~~~~ 72 (95)
+...|++.+++.|+.+++.+|+...++..||.| +|++.+|++.+..++|+++++.+...+. ...||||.|.
T Consensus 133 s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~Fi 210 (495)
T KOG2533|consen 133 SFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFI 210 (495)
T ss_pred hhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehh
Confidence 456688889999999999999999999999985 9999999999999999999999998863 4579999997
No 13
>PRK11663 regulatory protein UhpC; Provisional
Probab=99.08 E-value=5.2e-10 Score=78.17 Aligned_cols=68 Identities=18% Similarity=0.209 Sum_probs=61.0
Q ss_pred HHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271 5 FAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE 72 (95)
Q Consensus 5 ~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~ 72 (95)
.++..+++.|++.|..+++...++++|+| ++|++++++...+..+|..+++++.+++.+.+|||+.|.
T Consensus 113 ~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~ 181 (434)
T PRK11663 113 AFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMM 181 (434)
T ss_pred HHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHH
Confidence 34455678899999889999999999998 589999999999999999999999999999999999886
No 14
>PRK03545 putative arabinose transporter; Provisional
Probab=99.07 E-value=9.7e-10 Score=75.53 Aligned_cols=70 Identities=11% Similarity=0.091 Sum_probs=62.6
Q ss_pred hhHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271 3 SHFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE 72 (95)
Q Consensus 3 ~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~ 72 (95)
+..++..++++|++.+...+...+++++++| ++|++++|+...+..+|..+++++.+.+.+.+|||+.|+
T Consensus 97 ~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~ 167 (390)
T PRK03545 97 FTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFL 167 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHH
Confidence 4455666789999988888888899999998 599999999999999999999999999999999999887
No 15
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=99.07 E-value=5.3e-10 Score=77.97 Aligned_cols=72 Identities=17% Similarity=0.252 Sum_probs=68.0
Q ss_pred CchhHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271 1 MSSHFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE 72 (95)
Q Consensus 1 ~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~ 72 (95)
+++.+++..|++.|+..|..++....+..+..| +||++++++..+|..++.+++.|++.++-+.+|||+.|.
T Consensus 99 p~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~ 171 (394)
T COG2814 99 PSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFL 171 (394)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHH
Confidence 356778889999999999999999999999998 599999999999999999999999999999999999998
No 16
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=99.06 E-value=1.2e-09 Score=76.26 Aligned_cols=68 Identities=12% Similarity=0.188 Sum_probs=57.5
Q ss_pred HHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHH--------hhcChHHhhH
Q psy12271 5 FAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLL--------ESYGYRRDTE 72 (95)
Q Consensus 5 ~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~--------~~~gw~~~~~ 72 (95)
.++..|+++|++.|..++...+++++++| ++||++.++...+...|..+++.+...+. +.+|||+.|.
T Consensus 126 ~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~ 202 (432)
T PRK10406 126 LLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFA 202 (432)
T ss_pred HHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHH
Confidence 46778899999999999999999999998 69999999998888888887776654443 3689999887
No 17
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=99.06 E-value=4.6e-10 Score=75.46 Aligned_cols=69 Identities=25% Similarity=0.404 Sum_probs=61.2
Q ss_pred hHHHHHHHHHHhhccccchhHHHHHhhhhccchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271 4 HFAFSYGVFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE 72 (95)
Q Consensus 4 ~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~ 72 (95)
..++..+++.|++.+..++.....+.+|+|++|++++++...+..+|..+++++.+.+.+.+|||+.|.
T Consensus 92 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~ 160 (377)
T TIGR00890 92 AALYLTYGLASAGVGIAYGIALNTAVKWFPDKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFI 160 (377)
T ss_pred HHHHHHHHHHhHHHHHHHHhHHHHHHHHcCcccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHH
Confidence 345556679999999888888889999999999999999999999999999999999988899999886
No 18
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=99.05 E-value=2.1e-09 Score=73.22 Aligned_cols=70 Identities=23% Similarity=0.347 Sum_probs=62.4
Q ss_pred hhHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcC--hHHhhH
Q psy12271 3 SHFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYG--YRRDTE 72 (95)
Q Consensus 3 ~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~g--w~~~~~ 72 (95)
+..++..+++.|++.+..++....++.+++| ++|++++++...+..+|..+++.+.+.+.+..+ ||+.|.
T Consensus 100 ~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~ 172 (405)
T TIGR00891 100 YITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFF 172 (405)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHH
Confidence 3445667799999999999999999999998 699999999999999999999999999998877 998876
No 19
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=99.04 E-value=1.2e-09 Score=76.56 Aligned_cols=69 Identities=16% Similarity=0.166 Sum_probs=59.1
Q ss_pred hHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHH--------hhcChHHhhH
Q psy12271 4 HFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLL--------ESYGYRRDTE 72 (95)
Q Consensus 4 ~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~--------~~~gw~~~~~ 72 (95)
..++..|+++|++.|..++....++++++| ++||+++++...+..+|..+++.+...+. +.+|||+.|.
T Consensus 121 ~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~ 198 (479)
T PRK10077 121 PEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFA 198 (479)
T ss_pred HHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHH
Confidence 345678899999999999999999999998 68999999999999999998876655443 4579999887
No 20
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=99.04 E-value=8.6e-10 Score=77.71 Aligned_cols=70 Identities=33% Similarity=0.645 Sum_probs=62.1
Q ss_pred hhHHHHHHHHHHhhccccchhHHHHHhhhhccchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271 3 SHFAFSYGVFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE 72 (95)
Q Consensus 3 ~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~ 72 (95)
+.+++..+++.|++.+...++...++.+||+++|++++|+...+..+|..+++++.+.+.+.+|||+.|+
T Consensus 108 ~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~ 177 (455)
T TIGR00892 108 IELYLTAGFITGLGLAFNFQPSLTMLGKYFYRRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFL 177 (455)
T ss_pred HHHHHHHHHHHHhcchhhhhHHHHHHHHHHHhhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHH
Confidence 3445556788899998877778888999999999999999999999999999999999999999999987
No 21
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=99.03 E-value=2e-09 Score=76.50 Aligned_cols=60 Identities=17% Similarity=0.289 Sum_probs=53.2
Q ss_pred hhHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy12271 3 SHFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLL 62 (95)
Q Consensus 3 ~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~ 62 (95)
+..++..+++.|++.|..++....++++++| ++||+++++......+|..+++.+...+.
T Consensus 115 ~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~ 175 (502)
T TIGR00887 115 MATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVL 175 (502)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788899999999999999999999998 69999999999999999988888876654
No 22
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=98.99 E-value=1.7e-09 Score=76.81 Aligned_cols=71 Identities=21% Similarity=0.271 Sum_probs=63.5
Q ss_pred chhHHHHHHHHHHhhccccchhHHHHHhhhh-c-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271 2 SSHFAFSYGVFVGIGAGLSFPPGIFIVTSYF-L-KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE 72 (95)
Q Consensus 2 ~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f-~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~ 72 (95)
++..++..++++|+|.+...+....++.+++ | ++|++++|+......+|..++|++.+.+.+++||||.|+
T Consensus 93 ~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~ 165 (495)
T PRK14995 93 TASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFL 165 (495)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHH
Confidence 4556677789999999988888888887777 5 699999999999999999999999999999999999998
No 23
>PRK15075 citrate-proton symporter; Provisional
Probab=98.97 E-value=3.9e-09 Score=73.74 Aligned_cols=68 Identities=12% Similarity=0.183 Sum_probs=57.6
Q ss_pred HHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHH--------HhhcChHHhhH
Q psy12271 5 FAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYL--------LESYGYRRDTE 72 (95)
Q Consensus 5 ~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l--------~~~~gw~~~~~ 72 (95)
+++..++++|++.+..++....++++|+| ++|++++++...+..+|..+++.++..+ .+.+|||+.|.
T Consensus 119 ~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~ 195 (434)
T PRK15075 119 LVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFL 195 (434)
T ss_pred HHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHH
Confidence 35677899999999999988899999998 6999999999988888877777776665 35789999887
No 24
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=98.96 E-value=3.7e-09 Score=73.09 Aligned_cols=71 Identities=14% Similarity=0.162 Sum_probs=63.0
Q ss_pred chhHHHHHHHHHHhhccccchhHHHHHhhhhccchHHHHHHHHHhhHHHHHHHHHHHHHHHhhc-ChHHhhH
Q psy12271 2 SSHFAFSYGVFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLLESY-GYRRDTE 72 (95)
Q Consensus 2 ~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~-gw~~~~~ 72 (95)
++..++..++++|++.+..++....++.+|||++|+++++++..+..+|..+++++.+++.+++ +||+.+.
T Consensus 96 ~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~ 167 (393)
T PRK09705 96 QSALLLSSALLGGVGIGIIQAVMPSVIKRRFQQRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLA 167 (393)
T ss_pred chHHHHHHHHHHHhHHHHHhhhhhHHHHHHccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 4456677899999999998888889999999999999999999999999999999999998876 8998764
No 25
>PRK03893 putative sialic acid transporter; Provisional
Probab=98.94 E-value=4.8e-09 Score=73.89 Aligned_cols=70 Identities=19% Similarity=0.301 Sum_probs=63.0
Q ss_pred hhHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271 3 SHFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE 72 (95)
Q Consensus 3 ~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~ 72 (95)
...++..+++.|++.+..++....++.+++| ++|++++++...+..+|..+++++.+.+.+.+|||+.|.
T Consensus 108 ~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~ 178 (496)
T PRK03893 108 YWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFF 178 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHH
Confidence 3445667789999999989999999999998 589999999999999999999999999999999999877
No 26
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=98.94 E-value=7.4e-10 Score=74.04 Aligned_cols=68 Identities=29% Similarity=0.495 Sum_probs=64.0
Q ss_pred HHHHHHHHHHhhccccchhHHHHHhhhhcc-chHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271 5 FAFSYGVFVGIGAGLSFPPGIFIVTSYFLK-YRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE 72 (95)
Q Consensus 5 ~~~~~~~l~G~g~g~~~~~~~~~~~~~f~~-~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~ 72 (95)
.++..+++.|++.+...+....++.+++|+ +|++++++...+..+|..+++++.+.+.+.+|||+.|+
T Consensus 87 ~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~ 155 (352)
T PF07690_consen 87 LLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFL 155 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHH
T ss_pred HHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccc
Confidence 677888999999999999999999999995 99999999999999999999999999998999999887
No 27
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=98.94 E-value=4.2e-09 Score=70.60 Aligned_cols=70 Identities=11% Similarity=0.050 Sum_probs=63.3
Q ss_pred hhHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271 3 SHFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE 72 (95)
Q Consensus 3 ~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~ 72 (95)
...++..+++.|++.+...++...++.+++| ++|++++++...+..+|..+++++.+.+.+.+|||+.|+
T Consensus 92 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~ 162 (365)
T TIGR00900 92 IWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIW 162 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 4455666788999999999999999999998 599999999999999999999999999999999999886
No 28
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=98.92 E-value=7e-09 Score=70.36 Aligned_cols=70 Identities=13% Similarity=0.049 Sum_probs=63.0
Q ss_pred hhHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271 3 SHFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE 72 (95)
Q Consensus 3 ~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~ 72 (95)
+..++..+++.|++.+...++...++.+++| ++|++++++......+|..+++.+.+.+.+.+|||+.|.
T Consensus 93 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~ 163 (385)
T TIGR00710 93 IETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFA 163 (385)
T ss_pred HHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 3455667789999999999999999999998 589999999999999999999999999999999998876
No 29
>PRK10091 MFS transport protein AraJ; Provisional
Probab=98.92 E-value=5.7e-09 Score=71.71 Aligned_cols=70 Identities=16% Similarity=0.173 Sum_probs=61.9
Q ss_pred hhHHHHHHHHHHhhccccchhHHHHHhhhhcc-chHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271 3 SHFAFSYGVFVGIGAGLSFPPGIFIVTSYFLK-YRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE 72 (95)
Q Consensus 3 ~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~~-~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~ 72 (95)
+..++..+++.|++.+...+....++.+++++ +|++++++...+..+|..+++++.+++.+.+|||+.|.
T Consensus 91 ~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~ 161 (382)
T PRK10091 91 YLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFL 161 (382)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHH
Confidence 44556677999999998888888889999985 89999999999999999999999999999999999887
No 30
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=98.90 E-value=6.9e-09 Score=72.56 Aligned_cols=68 Identities=15% Similarity=0.169 Sum_probs=58.0
Q ss_pred HHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHh-hcChHHhhH
Q psy12271 5 FAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLE-SYGYRRDTE 72 (95)
Q Consensus 5 ~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~-~~gw~~~~~ 72 (95)
.+...+++.|++.+..+++....+.+++| ++|++++++...+..+|..+++++.+.... ..|||+.|+
T Consensus 120 ~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~ 189 (438)
T TIGR00712 120 IMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALY 189 (438)
T ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHH
Confidence 34456678899999888888889999997 699999999999999999999998886554 579999887
No 31
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=98.90 E-value=9e-09 Score=70.79 Aligned_cols=70 Identities=16% Similarity=0.170 Sum_probs=62.6
Q ss_pred hhHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271 3 SHFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE 72 (95)
Q Consensus 3 ~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~ 72 (95)
+..++..+++.|++.+...+....++.+++| ++|++++++...+..+|..+++.+...+.+.++||+.|+
T Consensus 103 ~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 173 (406)
T PRK11551 103 FPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFY 173 (406)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHH
Confidence 4455667789999999889999999999997 699999999999999999999999988889899999876
No 32
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=98.89 E-value=1.1e-08 Score=71.37 Aligned_cols=71 Identities=14% Similarity=-0.063 Sum_probs=61.4
Q ss_pred chhHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271 2 SSHFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE 72 (95)
Q Consensus 2 ~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~ 72 (95)
++..++..++++|++.+...+....++.+++| ++|++++++...+..+|..+++++++.+.+.+|||+.|+
T Consensus 103 ~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~ 174 (413)
T PRK15403 103 SMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFA 174 (413)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 44566778899999988666666778889998 588999999999999999999999999999899999887
No 33
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=98.88 E-value=5.2e-09 Score=74.77 Aligned_cols=68 Identities=12% Similarity=0.034 Sum_probs=60.7
Q ss_pred hhHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271 3 SHFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE 72 (95)
Q Consensus 3 ~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~ 72 (95)
+..+.+.+++.|+++|..+ +...++..||| ++|++++|+..++..+|.++++++.++ +..+|||+-+.
T Consensus 115 l~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y~~ 183 (511)
T TIGR00806 115 VWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWISYST 183 (511)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhHHH
Confidence 4456778899999999999 99999999999 599999999999999999999999999 66799997443
No 34
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=98.88 E-value=1.1e-09 Score=77.13 Aligned_cols=70 Identities=11% Similarity=-0.049 Sum_probs=60.4
Q ss_pred hhHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhc---ChHHhhH
Q psy12271 3 SHFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESY---GYRRDTE 72 (95)
Q Consensus 3 ~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~---gw~~~~~ 72 (95)
+..++..+++.|++++...++...++++||| ++||+++|+...+..+|..+++++..++...+ +||..|.
T Consensus 122 ~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~ 195 (467)
T PRK09556 122 LGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFI 195 (467)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHH
Confidence 4456667889999999999999999999998 58999999999999999999999988877654 5887664
No 35
>PRK12382 putative transporter; Provisional
Probab=98.87 E-value=7.7e-09 Score=70.99 Aligned_cols=69 Identities=10% Similarity=-0.023 Sum_probs=61.0
Q ss_pred hHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271 4 HFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE 72 (95)
Q Consensus 4 ~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~ 72 (95)
..++..++++|++.+...+.....+.+++| ++|++++++...+...|..+++++.+.+.+.+|||+.+.
T Consensus 113 ~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~ 182 (392)
T PRK12382 113 ALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALAL 182 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHH
Confidence 445667889999999888888888999997 699999999999999999999999999999999998654
No 36
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=98.84 E-value=8.8e-09 Score=71.03 Aligned_cols=68 Identities=18% Similarity=0.199 Sum_probs=60.9
Q ss_pred HHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHH---HHHHhhcChHHhhH
Q psy12271 5 FAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFL---RYLLESYGYRRDTE 72 (95)
Q Consensus 5 ~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~---~~l~~~~gw~~~~~ 72 (95)
.++..+++.|++.+..++....++++++| ++|++++++...+..+|..+++.+. ..+....|||+.|.
T Consensus 129 ~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~ 200 (481)
T TIGR00879 129 MLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLG 200 (481)
T ss_pred HHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHH
Confidence 56778899999999999999999999998 6999999999999999999999998 66667789998886
No 37
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=98.84 E-value=4.9e-09 Score=73.41 Aligned_cols=71 Identities=18% Similarity=0.253 Sum_probs=64.6
Q ss_pred chhHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271 2 SSHFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE 72 (95)
Q Consensus 2 ~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~ 72 (95)
++..++..++++|++.+...+....++.+++| ++|++++++...+..+|..+++.+.+++.+++|||+.|+
T Consensus 89 ~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~ 160 (485)
T TIGR00711 89 NLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFL 160 (485)
T ss_pred CHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhh
Confidence 34556778899999999999999999999998 699999999999999999999999999999999999886
No 38
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=98.83 E-value=2.6e-08 Score=67.78 Aligned_cols=70 Identities=9% Similarity=-0.006 Sum_probs=62.1
Q ss_pred hhHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271 3 SHFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE 72 (95)
Q Consensus 3 ~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~ 72 (95)
...++..+++.|++.+...++...++.+++| ++|++++++...+..+|..+++++.+.+.+.+|||+.|.
T Consensus 79 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~ 149 (377)
T PRK11102 79 IDQLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFW 149 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHH
Confidence 3445566789999988888888899999998 589999999999999999999999999999999999886
No 39
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=98.81 E-value=2.5e-08 Score=74.51 Aligned_cols=64 Identities=17% Similarity=0.258 Sum_probs=56.2
Q ss_pred hhHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcC
Q psy12271 3 SHFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYG 66 (95)
Q Consensus 3 ~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~g 66 (95)
+..++..+++.|++.|...+....++++++| ++||++++++.+...+|.++++.+...+...+|
T Consensus 255 ~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G 319 (742)
T TIGR01299 255 YGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYG 319 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4456677899999999999999999999998 699999999999999999999998888776554
No 40
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=98.81 E-value=1.7e-08 Score=69.34 Aligned_cols=68 Identities=13% Similarity=-0.052 Sum_probs=61.2
Q ss_pred HHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271 5 FAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE 72 (95)
Q Consensus 5 ~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~ 72 (95)
.++..++++|++.+...+....++.+++| ++|++++++...+..+|..+++++.+.+.+.+||++.+.
T Consensus 114 ~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~ 182 (399)
T PRK05122 114 LLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGL 182 (399)
T ss_pred HHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHH
Confidence 45667899999999999988888889987 699999999999999999999999999999999998775
No 41
>PRK03699 putative transporter; Provisional
Probab=98.79 E-value=3e-08 Score=68.40 Aligned_cols=70 Identities=20% Similarity=0.241 Sum_probs=59.4
Q ss_pred hhHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHh-hcChHHhhH
Q psy12271 3 SHFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLE-SYGYRRDTE 72 (95)
Q Consensus 3 ~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~-~~gw~~~~~ 72 (95)
...++..++++|++.+...+....++.+++| ++|++++++......+|..+++++.+.+.. .+|||+.|.
T Consensus 95 ~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~ 166 (394)
T PRK03699 95 LALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYA 166 (394)
T ss_pred HHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 3445667789999989888888889999998 589999999999999999999999888764 579999886
No 42
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=98.78 E-value=5.2e-08 Score=65.84 Aligned_cols=68 Identities=15% Similarity=0.226 Sum_probs=58.7
Q ss_pred HHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHH--------hhcChHHhhH
Q psy12271 5 FAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLL--------ESYGYRRDTE 72 (95)
Q Consensus 5 ~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~--------~~~gw~~~~~ 72 (95)
+++..++++|++.+...+....++.+++| ++|+++.++...+..+|..+++.+...+. +.++||+.|.
T Consensus 98 ~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~ 174 (394)
T TIGR00883 98 LLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFL 174 (394)
T ss_pred HHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHH
Confidence 45667899999999999999999999997 69999999999999999999988876654 4679998876
No 43
>TIGR00895 2A0115 benzoate transport.
Probab=98.78 E-value=2.5e-08 Score=67.61 Aligned_cols=70 Identities=21% Similarity=0.356 Sum_probs=62.8
Q ss_pred hhHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271 3 SHFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE 72 (95)
Q Consensus 3 ~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~ 72 (95)
+..++..+++.|++.+..++....++.+++| ++|++++++...+..+|..+++.+.+++.+.+|||+.|.
T Consensus 105 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~ 175 (398)
T TIGR00895 105 VTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFY 175 (398)
T ss_pred hHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehh
Confidence 3445667789999999999999999999998 589999999999999999999999999999999998766
No 44
>PRK10504 putative transporter; Provisional
Probab=98.76 E-value=3.6e-08 Score=69.21 Aligned_cols=70 Identities=16% Similarity=0.133 Sum_probs=63.2
Q ss_pred hhHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271 3 SHFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE 72 (95)
Q Consensus 3 ~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~ 72 (95)
...++..++++|++.+...+.....+.+++| ++|+++.++...+..+|..+++++.+.+.+.+|||+.|.
T Consensus 98 ~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~ 168 (471)
T PRK10504 98 LNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFL 168 (471)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHH
Confidence 3445667899999999999999999999998 589999999999999999999999999999999999987
No 45
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=98.75 E-value=6.6e-08 Score=66.38 Aligned_cols=69 Identities=12% Similarity=0.164 Sum_probs=60.6
Q ss_pred hHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271 4 HFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE 72 (95)
Q Consensus 4 ~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~ 72 (95)
..++..+++.|++.+..++....++.+++| ++|++++++......++..+++.+.+.+.+.+|||+.|+
T Consensus 92 ~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~ 161 (392)
T PRK10473 92 SLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFY 161 (392)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHH
Confidence 345566788999988888889999999998 699999999999999999999999988888899998876
No 46
>KOG1330|consensus
Probab=98.74 E-value=4.3e-10 Score=79.49 Aligned_cols=69 Identities=19% Similarity=0.075 Sum_probs=61.9
Q ss_pred hHHHHHHHHHHhhccccchhHHHHHhhhhcc-chHHHHHHHHHhhHHHHHHHHHHHHHHHhhcC-hHHhhH
Q psy12271 4 HFAFSYGVFVGIGAGLSFPPGIFIVTSYFLK-YRGLANGIAISGSALGSIFLPPFLRYLLESYG-YRRDTE 72 (95)
Q Consensus 4 ~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~~-~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~g-w~~~~~ 72 (95)
.+++..|.+.|+|.+.+.+.+.+++++-||+ +|++++++++.+.+.|..++-+++..+....+ |||+|+
T Consensus 122 wq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~ 192 (493)
T KOG1330|consen 122 WQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFR 192 (493)
T ss_pred HHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEE
Confidence 3455566789999999999999999999995 99999999999999999999999998887776 999987
No 47
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=98.73 E-value=7e-09 Score=69.74 Aligned_cols=70 Identities=24% Similarity=0.265 Sum_probs=60.5
Q ss_pred hhHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHH-HHHHHHhhcChHHhhH
Q psy12271 3 SHFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPP-FLRYLLESYGYRRDTE 72 (95)
Q Consensus 3 ~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~-~~~~l~~~~gw~~~~~ 72 (95)
...++..+++.|++.+...+....++.+++| ++|++++++...+..+|..++++ +...+.+..+||+.|.
T Consensus 83 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 154 (379)
T TIGR00881 83 LWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFI 154 (379)
T ss_pred HHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHH
Confidence 3456667789999999999999999999998 58999999999999999999995 6666777889999886
No 48
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=98.73 E-value=7.2e-08 Score=67.78 Aligned_cols=69 Identities=14% Similarity=0.141 Sum_probs=53.9
Q ss_pred hHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHH-HHHhhcChHHhhH
Q psy12271 4 HFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLR-YLLESYGYRRDTE 72 (95)
Q Consensus 4 ~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~-~l~~~~gw~~~~~ 72 (95)
..++..+++.|++.+..+++....+.+|+| ++|++++|+.+.+..+|..+.+++.. .+....|||+.|+
T Consensus 121 ~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~ 191 (452)
T PRK11273 121 AVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALY 191 (452)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHH
Confidence 345556788999999888888888999998 58999999999999998766555543 3334459999887
No 49
>PTZ00207 hypothetical protein; Provisional
Probab=98.71 E-value=5.7e-08 Score=71.00 Aligned_cols=67 Identities=19% Similarity=0.087 Sum_probs=55.7
Q ss_pred HHHHHHHHHHhhccccchhHHHHHhhhhccchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271 5 FAFSYGVFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE 72 (95)
Q Consensus 5 ~~~~~~~l~G~g~g~~~~~~~~~~~~~f~~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~ 72 (95)
.+..++++.|+|.+..++.+...+.+|||++||+++|+.....++|..+.+++...+.. .+|++.|+
T Consensus 122 ~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~-~~~~~~fl 188 (591)
T PTZ00207 122 RLSVYNGLMTLGCMLFDLGAVVTVLSVFPSNRGAVVAIMKTFTGLGSAILGSIQLAFFS-DNTSAYFF 188 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHH
Confidence 34455678999999888888899999999999999999999999999887777776655 46887665
No 50
>TIGR00898 2A0119 cation transport protein.
Probab=98.69 E-value=1.1e-07 Score=67.26 Aligned_cols=68 Identities=18% Similarity=0.331 Sum_probs=57.7
Q ss_pred chhHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271 2 SSHFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE 72 (95)
Q Consensus 2 ~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~ 72 (95)
++..++..+++.|++.+...+....++.+++| ++|+++.++...+..+|.++++.+...+.+ ||+.|+
T Consensus 179 ~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~~~~ 247 (505)
T TIGR00898 179 NYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRWLQL 247 (505)
T ss_pred cHHHHHHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHH
Confidence 34567777899999999999999999999998 589999999999999999888877665543 998876
No 51
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=98.67 E-value=9.5e-08 Score=68.33 Aligned_cols=67 Identities=15% Similarity=0.167 Sum_probs=60.1
Q ss_pred HHHHHHHHHhhccccchhHHHHHhhhhc-c--chHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271 6 AFSYGVFVGIGAGLSFPPGIFIVTSYFL-K--YRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE 72 (95)
Q Consensus 6 ~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~--~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~ 72 (95)
++...+++|+|.|...+...+++.++|| + +|+.+.+++.++.++|..+++.+.+++.+++|||+.|+
T Consensus 108 l~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~ 177 (489)
T PRK10207 108 IFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYN 177 (489)
T ss_pred HHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHH
Confidence 4456678899999999999999999997 3 45889999999999999999999999999999999997
No 52
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=98.66 E-value=1.6e-07 Score=66.71 Aligned_cols=68 Identities=19% Similarity=0.206 Sum_probs=48.6
Q ss_pred hHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHH----h-----hcChHHhhH
Q psy12271 4 HFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLL----E-----SYGYRRDTE 72 (95)
Q Consensus 4 ~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~----~-----~~gw~~~~~ 72 (95)
..++..+++.|++.+.. .+....+++||| ++||+++|+......+|..+++.+...+. . ..|||+.|+
T Consensus 125 ~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~ 202 (476)
T PLN00028 125 TGFIAVRFFIGFSLATF-VSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFF 202 (476)
T ss_pred HHHHHHHHHHHHHHHhh-HHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHH
Confidence 34556678899887754 445567899998 59999999998766666666655554432 2 258999887
No 53
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=98.66 E-value=6.7e-08 Score=71.08 Aligned_cols=63 Identities=27% Similarity=0.293 Sum_probs=57.4
Q ss_pred hhHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhc
Q psy12271 3 SHFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESY 65 (95)
Q Consensus 3 ~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~ 65 (95)
+.++++.++++|+|.+..++....++++++| ++|+++++++..+..+|+.+++++++++.+.+
T Consensus 172 ~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~ 235 (633)
T TIGR00805 172 WLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIY 235 (633)
T ss_pred ehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcc
Confidence 4567778999999999999999999999998 59999999999999999999999999988654
No 54
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=98.65 E-value=3e-07 Score=63.11 Aligned_cols=69 Identities=20% Similarity=0.229 Sum_probs=57.3
Q ss_pred hhHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271 3 SHFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE 72 (95)
Q Consensus 3 ~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~ 72 (95)
+..++..+++.|++.+ ..+.....+.+++| ++|++++++...+..+|..+++++.+.+.+.+|||+.|.
T Consensus 107 ~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~ 176 (408)
T PRK09874 107 IWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFF 176 (408)
T ss_pred HHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 3445566788888754 45666778888887 599999999999999999999999999999999998876
No 55
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=98.65 E-value=1.5e-07 Score=64.93 Aligned_cols=70 Identities=13% Similarity=0.021 Sum_probs=60.5
Q ss_pred hhHHHHHHHHHHhhccccchhHHHHHhhhhcc-chHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271 3 SHFAFSYGVFVGIGAGLSFPPGIFIVTSYFLK-YRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE 72 (95)
Q Consensus 3 ~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~~-~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~ 72 (95)
...++..+++.|++.+...+.....+.+++|+ +|++++++......++..++|++.+.+.+.+|||+.|+
T Consensus 101 ~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~ 171 (406)
T PRK15402 101 IEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFV 171 (406)
T ss_pred HHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHH
Confidence 34455677899999888888888999999984 88899999988888999999999999999999999887
No 56
>TIGR00901 2A0125 AmpG-related permease.
Probab=98.64 E-value=2.2e-07 Score=63.03 Aligned_cols=64 Identities=9% Similarity=-0.094 Sum_probs=56.4
Q ss_pred HHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcC--------hHHhhH
Q psy12271 9 YGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYG--------YRRDTE 72 (95)
Q Consensus 9 ~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~g--------w~~~~~ 72 (95)
..++.+++.+...++..+++.+++| ++|++++++...+..+|..+++++...+.+.+| ||..|.
T Consensus 89 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~ 161 (356)
T TIGR00901 89 LAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFF 161 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHH
Confidence 3456667777778888899999997 699999999999999999999999999998888 999887
No 57
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=98.64 E-value=9.3e-08 Score=73.55 Aligned_cols=70 Identities=14% Similarity=0.002 Sum_probs=64.0
Q ss_pred hhHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271 3 SHFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE 72 (95)
Q Consensus 3 ~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~ 72 (95)
+..++..++++|++.+...|+..+++.++++ ++|++++|+..++.++|.++++++++++....||++.|.
T Consensus 108 ~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~ 178 (1140)
T PRK06814 108 VPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVA 178 (1140)
T ss_pred HHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 4456667899999999999999999999998 599999999999999999999999999999999999874
No 58
>PRK11043 putative transporter; Provisional
Probab=98.63 E-value=3.1e-07 Score=63.26 Aligned_cols=70 Identities=11% Similarity=0.080 Sum_probs=59.5
Q ss_pred hhHHHHHHHHHHhhccccchhHHHHHhhhhcc-chHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271 3 SHFAFSYGVFVGIGAGLSFPPGIFIVTSYFLK-YRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE 72 (95)
Q Consensus 3 ~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~~-~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~ 72 (95)
+..++..+++.|++.+...+....++.+++++ +++.+.+.......++..+++++.+++.+.+|||+.|+
T Consensus 94 ~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~ 164 (401)
T PRK11043 94 AAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFA 164 (401)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHH
Confidence 33455567889998887777777889999985 78899999999999999999999999999999999886
No 59
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=98.61 E-value=1.6e-07 Score=64.97 Aligned_cols=66 Identities=15% Similarity=0.097 Sum_probs=52.7
Q ss_pred hhHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHH-HHHHHHHHHHHhhcChH
Q psy12271 3 SHFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGS-IFLPPFLRYLLESYGYR 68 (95)
Q Consensus 3 ~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~-~~~~~~~~~l~~~~gw~ 68 (95)
+..++..+++.|+|.+...+.....+.+++| ++|++++|+...+.++|. .+++++.+++.+.+||+
T Consensus 105 ~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~ 172 (402)
T TIGR00897 105 YPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEM 172 (402)
T ss_pred HHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchH
Confidence 3344566788899888777777777778876 699999999999999997 57888888888888844
No 60
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=98.61 E-value=2.5e-07 Score=53.98 Aligned_cols=68 Identities=25% Similarity=0.432 Sum_probs=60.4
Q ss_pred HHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271 5 FAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE 72 (95)
Q Consensus 5 ~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~ 72 (95)
.++...++.|++.+...+.....+.+.+| ++|++++++......+|..+++.+.+.+.+..+|++.+.
T Consensus 53 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 121 (141)
T TIGR00880 53 VLIIARFLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFL 121 (141)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHH
Confidence 34555688899888888888899999998 589999999999999999999999999999999998876
No 61
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=98.61 E-value=3.5e-07 Score=62.86 Aligned_cols=70 Identities=14% Similarity=0.156 Sum_probs=60.6
Q ss_pred hhHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271 3 SHFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE 72 (95)
Q Consensus 3 ~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~ 72 (95)
...++..+++.|++.+...+....+..++++ ++++.++++...+..++..+++++.+.+.+.+|||+.|+
T Consensus 96 ~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~ 166 (394)
T PRK11652 96 LTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYL 166 (394)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHH
Confidence 3455667789999888777777788888887 599999999999999999999999999999999998887
No 62
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=98.60 E-value=2.8e-07 Score=61.25 Aligned_cols=71 Identities=27% Similarity=0.419 Sum_probs=64.3
Q ss_pred chhHHHHHHHHHHhhccccchhHHHHHhhhhcc-chHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271 2 SSHFAFSYGVFVGIGAGLSFPPGIFIVTSYFLK-YRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE 72 (95)
Q Consensus 2 ~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~~-~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~ 72 (95)
+...++..+++.|++.+...+....++.+++|+ +|++++++......+|..+++.+.+.+.+..+||+.+.
T Consensus 86 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 157 (352)
T cd06174 86 SLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFL 157 (352)
T ss_pred cHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 345566778999999999999999999999985 99999999999999999999999999999999998876
No 63
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=98.60 E-value=2.4e-07 Score=64.37 Aligned_cols=68 Identities=19% Similarity=0.305 Sum_probs=59.9
Q ss_pred hHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271 4 HFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE 72 (95)
Q Consensus 4 ~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~ 72 (95)
..++..+++.|++.+...++..+++.+++| ++|++++|+......+|..+++++.+++. .+|||+.|+
T Consensus 100 ~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~ 168 (400)
T PRK11646 100 WLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCA 168 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHH
Confidence 344556788999888888888899999997 69999999999999999999999999998 789999887
No 64
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=98.58 E-value=2.6e-07 Score=62.51 Aligned_cols=68 Identities=19% Similarity=0.303 Sum_probs=49.8
Q ss_pred hhHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHh----------hcChHHhh
Q psy12271 3 SHFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLE----------SYGYRRDT 71 (95)
Q Consensus 3 ~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~----------~~gw~~~~ 71 (95)
+..++..+++.|++.+ .+++...++++++| ++|++++++......+|..+++.+.+.+.. ..+||+.|
T Consensus 91 ~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~ 169 (366)
T TIGR00886 91 YSVLLLLRLFIGIAGG-SFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAF 169 (366)
T ss_pred HHHHHHHHHHHHHhch-hhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchh
Confidence 4456667889998855 45667889999998 599999999986666666666555555443 24899888
No 65
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=98.57 E-value=3.2e-07 Score=62.28 Aligned_cols=69 Identities=14% Similarity=0.173 Sum_probs=58.4
Q ss_pred hHHHHHHHHHHhhccccchhHHHHHhhhhccchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcC--hHHhhH
Q psy12271 4 HFAFSYGVFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLLESYG--YRRDTE 72 (95)
Q Consensus 4 ~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~g--w~~~~~ 72 (95)
..++..+++.|++.+...+....++.+++|++|++++++...+..+|..+++.+.+.+.+..+ ||+.|.
T Consensus 88 ~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~ 158 (355)
T TIGR00896 88 ALLFAGTALIGVGIAIINVLLPSLIKRDFPQRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALA 158 (355)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 445667789999988877777778899999999999999999999999999999988887653 898775
No 66
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=98.56 E-value=1.9e-07 Score=64.30 Aligned_cols=68 Identities=13% Similarity=0.043 Sum_probs=56.4
Q ss_pred hHHHHHHHHHHhhccccchhHHHHHhhhhccchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271 4 HFAFSYGVFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE 72 (95)
Q Consensus 4 ~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~ 72 (95)
..++..++++|.+.+...|....+.. +++++|+++.|....+.++|..+++++.+.+.+.+|||..|.
T Consensus 95 ~~l~~~~~l~~~~~~~~~p~~~al~~-~~~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~ 162 (382)
T TIGR00902 95 WLLFIAIGLFALFFSAGMPIGDALAN-TWQKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILA 162 (382)
T ss_pred HHHHHHHHHHHHHHccchhHHHHHHH-HHHHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHH
Confidence 34444566788887777777767654 456789999999999999999999999999999999999887
No 67
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=98.56 E-value=2.7e-07 Score=65.67 Aligned_cols=68 Identities=19% Similarity=0.233 Sum_probs=59.9
Q ss_pred HHHHHHHHHHhhccccchhHHHHHhhhhcc----chHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271 5 FAFSYGVFVGIGAGLSFPPGIFIVTSYFLK----YRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE 72 (95)
Q Consensus 5 ~~~~~~~l~G~g~g~~~~~~~~~~~~~f~~----~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~ 72 (95)
.++...++.|+|.|...+....++++++|+ +|+.+.++...+..+|..+++++.+++.+++||++.|.
T Consensus 104 ~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~ 175 (475)
T TIGR00924 104 LIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFN 175 (475)
T ss_pred HHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHH
Confidence 344456788999999999999999999973 38899999999999999999999999999999999886
No 68
>KOG0255|consensus
Probab=98.56 E-value=4e-07 Score=64.98 Aligned_cols=68 Identities=19% Similarity=0.185 Sum_probs=62.1
Q ss_pred chhHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271 2 SSHFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE 72 (95)
Q Consensus 2 ~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~ 72 (95)
++..|+..|++.|++.+..+.....+++++++ ++|+.+..+ ......++.+.+++.+++.+ +||+.++
T Consensus 170 ~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~ 238 (521)
T KOG0255|consen 170 NYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFW 238 (521)
T ss_pred cHHHHHHHHHHHHhhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHH
Confidence 56788899999999999999999999999996 799999999 88888899999999999988 8999887
No 69
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=98.55 E-value=5.3e-07 Score=62.01 Aligned_cols=67 Identities=21% Similarity=0.148 Sum_probs=57.9
Q ss_pred HHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271 6 AFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE 72 (95)
Q Consensus 6 ~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~ 72 (95)
.+...++.|++.+..++.....+.+.+| ++||++.|+.+....+|..+++++.+.+.++.||++.|.
T Consensus 305 ~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~ 372 (399)
T PRK05122 305 ALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFL 372 (399)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 3445578888888888877777788887 699999999999999999999999999999999998887
No 70
>PRK10489 enterobactin exporter EntS; Provisional
Probab=98.54 E-value=3.2e-07 Score=63.63 Aligned_cols=69 Identities=16% Similarity=0.155 Sum_probs=60.2
Q ss_pred hHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271 4 HFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE 72 (95)
Q Consensus 4 ~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~ 72 (95)
..++..+++.|++.+...++...++.+++| ++|+++.++...+..+|..+++++.+.+.+..||++.|.
T Consensus 111 ~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~ 180 (417)
T PRK10489 111 LAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYG 180 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHH
Confidence 344556788898888778888889999998 589999999999999999999999999999899999887
No 71
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=98.52 E-value=7.5e-07 Score=63.59 Aligned_cols=57 Identities=19% Similarity=0.246 Sum_probs=44.1
Q ss_pred chhHHHHHHHHHHhhccccchhHHHHHhhhhcc-chHHHHHHHHHhhHHHHHHHHHHHH
Q psy12271 2 SSHFAFSYGVFVGIGAGLSFPPGIFIVTSYFLK-YRGLANGIAISGSALGSIFLPPFLR 59 (95)
Q Consensus 2 ~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~~-~rg~a~gi~~~~~~~g~~~~~~~~~ 59 (95)
++..++..+++.|++ +..+++....+++|||+ +||+++|+...+..+|..+.+++..
T Consensus 127 s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p 184 (462)
T PRK15034 127 PFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAP 184 (462)
T ss_pred CHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHH
Confidence 455677788999997 77899999999999995 8999999996555555554444443
No 72
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=98.52 E-value=8e-08 Score=67.79 Aligned_cols=68 Identities=15% Similarity=0.115 Sum_probs=58.8
Q ss_pred HHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhc-ChHHhhH
Q psy12271 5 FAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESY-GYRRDTE 72 (95)
Q Consensus 5 ~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~-gw~~~~~ 72 (95)
.++...++.|++.+...+...+++.+.+| +++++++|+.+....+|..++|++.+.+.+.. +|++.|+
T Consensus 335 ~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~ 404 (455)
T TIGR00892 335 GLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFY 404 (455)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHH
Confidence 34456678888888888888889999997 58999999999999999999999999999877 4988776
No 73
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=98.51 E-value=3e-07 Score=63.21 Aligned_cols=67 Identities=12% Similarity=0.020 Sum_probs=55.4
Q ss_pred HHHHHHHHHHhhccccchhHHHHHhhhhccchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271 5 FAFSYGVFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE 72 (95)
Q Consensus 5 ~~~~~~~l~G~g~g~~~~~~~~~~~~~f~~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~ 72 (95)
.++..+++.|++.+...+....++.+| .++|+++.+.......+|..++|++++++.+++|||..|+
T Consensus 96 ~l~i~~~l~g~~~~~~~~~~~a~~~~~-~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~ 162 (382)
T PRK11128 96 LLFVAIGLFNLFFSPLVPLTDALANTW-QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILW 162 (382)
T ss_pred HHHHHHHHHHHHHcccccHHHHHHHHH-HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHH
Confidence 344566778888887777776666654 6788899999999999999999999999999999998876
No 74
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=98.50 E-value=5.5e-07 Score=64.50 Aligned_cols=68 Identities=16% Similarity=0.169 Sum_probs=58.5
Q ss_pred HHHHHHHHHHhhccccchhHHHHHhhhhcc---chHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271 5 FAFSYGVFVGIGAGLSFPPGIFIVTSYFLK---YRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE 72 (95)
Q Consensus 5 ~~~~~~~l~G~g~g~~~~~~~~~~~~~f~~---~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~ 72 (95)
+++...++.|+|.|...+....+++++||+ +|+.+.+++..+..+|..++|++.+++.+++|||+.|.
T Consensus 114 ~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~ 184 (500)
T PRK09584 114 IVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFA 184 (500)
T ss_pred HHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHH
Confidence 344556788999998888888999999973 35568899999999999999999999999999999886
No 75
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=98.49 E-value=7.3e-07 Score=60.39 Aligned_cols=68 Identities=15% Similarity=0.157 Sum_probs=53.5
Q ss_pred HHHHHHHHHHhhccccchhHHHHHhhhhcc-chHHH--HHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271 5 FAFSYGVFVGIGAGLSFPPGIFIVTSYFLK-YRGLA--NGIAISGSALGSIFLPPFLRYLLESYGYRRDTE 72 (95)
Q Consensus 5 ~~~~~~~l~G~g~g~~~~~~~~~~~~~f~~-~rg~a--~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~ 72 (95)
.++..+++.|.+.+...|....++.++.|+ +|+.+ .++...+..+|..+++++.+.+.+.+|||+.|.
T Consensus 89 ~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~ 159 (375)
T TIGR00899 89 LLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFL 159 (375)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHH
Confidence 344556777766666677777788888874 55544 688888889999999999999999999999887
No 76
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=98.48 E-value=1.3e-06 Score=60.52 Aligned_cols=66 Identities=14% Similarity=0.071 Sum_probs=56.7
Q ss_pred HHHHHHHHhhccccchhHHHHHhhhhcc-chHHHHHHHHHhhHHHHHHHHHHHHHHHhh-cChHHhhH
Q psy12271 7 FSYGVFVGIGAGLSFPPGIFIVTSYFLK-YRGLANGIAISGSALGSIFLPPFLRYLLES-YGYRRDTE 72 (95)
Q Consensus 7 ~~~~~l~G~g~g~~~~~~~~~~~~~f~~-~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~-~gw~~~~~ 72 (95)
+...++.++..+...++...++.+++|+ +|+++.++...+..+|..+++.+...+.+. +|||..|+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~ 165 (402)
T PRK11902 98 AGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYL 165 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHH
Confidence 3344566777777888999999999985 799999999999999999999999999886 59999887
No 77
>PRK11010 ampG muropeptide transporter; Validated
Probab=98.47 E-value=9.7e-07 Score=63.04 Aligned_cols=68 Identities=13% Similarity=0.070 Sum_probs=59.6
Q ss_pred HHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHh-hcChHHhhH
Q psy12271 5 FAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLE-SYGYRRDTE 72 (95)
Q Consensus 5 ~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~-~~gw~~~~~ 72 (95)
.+...+++.|++.+...++...++.+|+| ++|++++++...+..+|..+++.+..++.+ .+|||..|+
T Consensus 109 ~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~ 178 (491)
T PRK11010 109 WLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYW 178 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHH
Confidence 44445677888888888888899999998 699999999999999999999999999998 579999997
No 78
>PRK12382 putative transporter; Provisional
Probab=98.38 E-value=2.1e-06 Score=58.94 Aligned_cols=67 Identities=24% Similarity=0.216 Sum_probs=58.0
Q ss_pred HHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271 6 AFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE 72 (95)
Q Consensus 6 ~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~ 72 (95)
.+...++.|++.+..++.....+.+.+| ++||+++|+.+....+|..+++++.+++.+++||+..|.
T Consensus 305 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~ 372 (392)
T PRK12382 305 ALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFL 372 (392)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHH
Confidence 3445577888888777877777788886 699999999999999999999999999999999999887
No 79
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=98.35 E-value=8.3e-07 Score=62.33 Aligned_cols=66 Identities=27% Similarity=0.431 Sum_probs=56.8
Q ss_pred HHHHHHHHHHhhccccchhHHHHHhhhhcc-chHHHHHHHHHhhHHHHHHHHHHHHHHHhhcC---hHHhhH
Q psy12271 5 FAFSYGVFVGIGAGLSFPPGIFIVTSYFLK-YRGLANGIAISGSALGSIFLPPFLRYLLESYG---YRRDTE 72 (95)
Q Consensus 5 ~~~~~~~l~G~g~g~~~~~~~~~~~~~f~~-~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~g---w~~~~~ 72 (95)
.++..+++.|++ |..+......++.|||| ++|+|+|+.. ..++|..+...+...++...| ||.+-.
T Consensus 107 ~ll~~gll~G~~-GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~ 176 (417)
T COG2223 107 QLLVIGLLLGLA-GASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAG 176 (417)
T ss_pred HHHHHHHHHhcc-cceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 567777899986 66788888999999995 9999999999 888999999999999999999 886544
No 80
>PRK15011 sugar efflux transporter B; Provisional
Probab=98.34 E-value=2.7e-06 Score=58.76 Aligned_cols=62 Identities=15% Similarity=0.083 Sum_probs=45.8
Q ss_pred HHHHhhccccchhHHHHHhhhhcc-ch--HHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271 11 VFVGIGAGLSFPPGIFIVTSYFLK-YR--GLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE 72 (95)
Q Consensus 11 ~l~G~g~g~~~~~~~~~~~~~f~~-~r--g~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~ 72 (95)
++.|...+...+....++.++.++ +| +...++...+.++|.++++++.+.+.+++|||..|.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~ 177 (393)
T PRK15011 113 VFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYL 177 (393)
T ss_pred HHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHH
Confidence 333433344566666667776653 34 345688889999999999999999999999999886
No 81
>KOG3764|consensus
Probab=98.34 E-value=2.9e-07 Score=64.62 Aligned_cols=72 Identities=26% Similarity=0.344 Sum_probs=64.8
Q ss_pred chhHHHHHHHHHHhhccccchhHHHHHhhhhcc--chHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhHH
Q psy12271 2 SSHFAFSYGVFVGIGAGLSFPPGIFIVTSYFLK--YRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTEK 73 (95)
Q Consensus 2 ~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~~--~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~ 73 (95)
+..+.+..|.++|+|.++...+...++++.||+ +|++++|+.....++|-.++||+++.+-+-.|.+.-|.+
T Consensus 158 sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlV 231 (464)
T KOG3764|consen 158 SYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLV 231 (464)
T ss_pred hhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHH
Confidence 344566677999999999999999999999983 889999999999999999999999999999999988873
No 82
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=98.33 E-value=2.6e-06 Score=59.11 Aligned_cols=65 Identities=18% Similarity=0.058 Sum_probs=57.2
Q ss_pred HHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271 7 FSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE 72 (95)
Q Consensus 7 ~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~ 72 (95)
+..++++|++.+...|+...++.+++| ++|++++|+......+|..++|++++.+.+. .|+..+.
T Consensus 92 ~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~ 157 (393)
T PRK11195 92 LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP-HAEAALA 157 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 345688999999999999999999998 5999999999999999999999999999885 4776554
No 83
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=98.30 E-value=3.7e-06 Score=58.90 Aligned_cols=67 Identities=15% Similarity=0.131 Sum_probs=57.2
Q ss_pred HHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHH-HhhHHHHHHHHHHHHHHHhh------cChHHhhH
Q psy12271 6 AFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAI-SGSALGSIFLPPFLRYLLES------YGYRRDTE 72 (95)
Q Consensus 6 ~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~-~~~~~g~~~~~~~~~~l~~~------~gw~~~~~ 72 (95)
++...++.|++.+...+....++++++| ++|++++|+.+ ...++|..++|++.+++.++ +||+.+|.
T Consensus 311 l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~ 385 (418)
T TIGR00889 311 LFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWL 385 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHH
Confidence 3445678888888888888889999998 59999999997 67889999999999999987 46998876
No 84
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=98.28 E-value=3.8e-06 Score=58.75 Aligned_cols=61 Identities=13% Similarity=-0.041 Sum_probs=52.6
Q ss_pred chhHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy12271 2 SSHFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLL 62 (95)
Q Consensus 2 ~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~ 62 (95)
++..++..+++.|+|.|...++....+.+..| ++|++.+++.....++|..+++.+...+.
T Consensus 93 ~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~ 154 (410)
T TIGR00885 93 NYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLI 154 (410)
T ss_pred cHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567778899999999998888888888887 58999999999999999999999888775
No 85
>PRK10489 enterobactin exporter EntS; Provisional
Probab=98.25 E-value=4e-06 Score=58.17 Aligned_cols=66 Identities=12% Similarity=0.003 Sum_probs=54.9
Q ss_pred HHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271 7 FSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE 72 (95)
Q Consensus 7 ~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~ 72 (95)
+...++.|++.+...+...+++.+.+| ++||+++|+......+|..+++.+.+++.+.+|.+..+.
T Consensus 316 ~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~ 382 (417)
T PRK10489 316 VLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASAS 382 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHH
Confidence 344456677766666667788889998 489999999999999999999999999999999887775
No 86
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=98.20 E-value=7.7e-06 Score=54.95 Aligned_cols=65 Identities=15% Similarity=0.044 Sum_probs=55.5
Q ss_pred HHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhHH
Q psy12271 9 YGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTEK 73 (95)
Q Consensus 9 ~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~ 73 (95)
..++.|++.+...+....++.+.+| ++|+++.|+......+|..+++++.+.+.++.||++.|.+
T Consensus 301 ~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~ 366 (377)
T TIGR00890 301 TVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIV 366 (377)
T ss_pred HHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHH
Confidence 3456677777666666778889998 6999999999999999999999999999999999998874
No 87
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=98.15 E-value=1e-05 Score=54.77 Aligned_cols=65 Identities=15% Similarity=0.121 Sum_probs=56.1
Q ss_pred HHHHHHHhhccccchhHHHHHhhhhccchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271 8 SYGVFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE 72 (95)
Q Consensus 8 ~~~~l~G~g~g~~~~~~~~~~~~~f~~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~ 72 (95)
...++.|++.+...+.....+.+.+|+++++++++.+....+|..+++++.+.+.+.+||+..|.
T Consensus 293 ~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~ 357 (375)
T TIGR00899 293 MLQLLNAIFIGILAGIGMLYFQDLMPGRAGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYW 357 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHH
Confidence 34566777777777777788888899888899999999999999999999999999999998887
No 88
>PRK09528 lacY galactoside permease; Reviewed
Probab=98.15 E-value=5.3e-06 Score=57.66 Aligned_cols=68 Identities=13% Similarity=0.104 Sum_probs=54.5
Q ss_pred HHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHH-HHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271 5 FAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGI-AISGSALGSIFLPPFLRYLLESYGYRRDTE 72 (95)
Q Consensus 5 ~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~ 72 (95)
.++..+++.|++.+...+....++.+.+| +.|++..+. .+....+|.++++++.+++.+.+||+..|.
T Consensus 317 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~ 386 (420)
T PRK09528 317 EVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYL 386 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHH
Confidence 34455677787777666777788888898 577777655 567788999999999999999999998887
No 89
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=98.14 E-value=1.1e-05 Score=62.09 Aligned_cols=62 Identities=18% Similarity=0.222 Sum_probs=55.9
Q ss_pred hhHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhh
Q psy12271 3 SHFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLES 64 (95)
Q Consensus 3 ~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~ 64 (95)
+..++..+++.|++.+...++...++.+++| ++|++++|+..++..+|.++++++++++.+.
T Consensus 103 ~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~ 165 (1146)
T PRK08633 103 FWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFES 165 (1146)
T ss_pred HHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456667789999999999999999999998 5999999999999999999999999999876
No 90
>PRK10054 putative transporter; Provisional
Probab=98.14 E-value=1.4e-05 Score=55.50 Aligned_cols=63 Identities=6% Similarity=-0.078 Sum_probs=51.2
Q ss_pred HHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271 9 YGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE 72 (95)
Q Consensus 9 ~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~ 72 (95)
.+++.|.+.+...+......++.+| ++|+++.|+......+|..++|++.+.+.. +||+..|+
T Consensus 102 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~ 165 (395)
T PRK10054 102 FFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFW 165 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHH
Confidence 3455666656566667777788887 589999999999999999999999998875 79998886
No 91
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=98.11 E-value=9.1e-06 Score=54.64 Aligned_cols=63 Identities=21% Similarity=0.073 Sum_probs=50.2
Q ss_pred HHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhh
Q psy12271 9 YGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDT 71 (95)
Q Consensus 9 ~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~ 71 (95)
..++.|+......+....++++.+| ++|+++.|+.+....+|..+++++.+.+.+++||++.|
T Consensus 316 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f 379 (379)
T TIGR00881 316 CLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWAGAF 379 (379)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhcccccC
Confidence 3344554433444455567888888 59999999999999999999999999999999999865
No 92
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=98.07 E-value=2e-05 Score=53.38 Aligned_cols=71 Identities=11% Similarity=-0.071 Sum_probs=62.0
Q ss_pred chhHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhh----------------
Q psy12271 2 SSHFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLES---------------- 64 (95)
Q Consensus 2 ~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~---------------- 64 (95)
++..|+...++.|+|.+..-+.+..++++..+ +++++.+++.....++|..++|.+.+.++..
T Consensus 9 ~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~~~~ 88 (310)
T TIGR01272 9 YYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATANAEA 88 (310)
T ss_pred HHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhhHHH
Confidence 45678888899999999999999999999987 5899999999999999999999999988832
Q ss_pred cChHHhhH
Q psy12271 65 YGYRRDTE 72 (95)
Q Consensus 65 ~gw~~~~~ 72 (95)
..|++.|.
T Consensus 89 ~~~~~~yl 96 (310)
T TIGR01272 89 AKVHTPYL 96 (310)
T ss_pred HHHHHHHH
Confidence 46888777
No 93
>PRK03545 putative arabinose transporter; Provisional
Probab=98.06 E-value=4.1e-05 Score=52.70 Aligned_cols=67 Identities=10% Similarity=-0.159 Sum_probs=55.8
Q ss_pred HHHHHHHHHhhccccchhHHHHHhhhhccchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271 6 AFSYGVFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE 72 (95)
Q Consensus 6 ~~~~~~l~G~g~g~~~~~~~~~~~~~f~~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~ 72 (95)
.+...++.|++.+...+.....+.+..|++|++++|+......+|..+++++.+.+.+++|++..|+
T Consensus 297 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~ 363 (390)
T PRK03545 297 LSVLSIFWGIAIMCIGLAMQVKVLKLAPDATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGY 363 (390)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHH
Confidence 3345567777766655666677778788899999999999999999999999999999999999887
No 94
>PRK15011 sugar efflux transporter B; Provisional
Probab=98.06 E-value=2.1e-05 Score=54.34 Aligned_cols=64 Identities=16% Similarity=0.132 Sum_probs=52.0
Q ss_pred HHHHHHhhccccchhHHHHHhhhhccchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271 9 YGVFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE 72 (95)
Q Consensus 9 ~~~l~G~g~g~~~~~~~~~~~~~f~~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~ 72 (95)
..++.+++.+...+.......+.+|++||+++++.+....+|..+++.+.+.+.+.+||+..|.
T Consensus 311 ~~~l~~~~~g~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~ 374 (393)
T PRK15011 311 LQLLNAIYIGILGGIGMLYFQDLMPGQAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFW 374 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 3444555555555555566788899889999999999999999999999999999999998876
No 95
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=98.04 E-value=2.8e-05 Score=51.62 Aligned_cols=68 Identities=24% Similarity=0.367 Sum_probs=61.4
Q ss_pred HHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271 5 FAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE 72 (95)
Q Consensus 5 ~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~ 72 (95)
..+...++.|++.+...+.....+.+.+| ++|++.+|+......+|..+++++.+.+.+..+|+..+.
T Consensus 267 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~ 335 (352)
T cd06174 267 LLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFL 335 (352)
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHH
Confidence 34455678899999999999999999998 699999999999999999999999999999999998876
No 96
>PRK10133 L-fucose transporter; Provisional
Probab=98.04 E-value=2.9e-05 Score=54.83 Aligned_cols=61 Identities=15% Similarity=0.048 Sum_probs=49.4
Q ss_pred chhHHHHHHHHHHhhccccchhHHHHHhhhhcc-chHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy12271 2 SSHFAFSYGVFVGIGAGLSFPPGIFIVTSYFLK-YRGLANGIAISGSALGSIFLPPFLRYLL 62 (95)
Q Consensus 2 ~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~~-~rg~a~gi~~~~~~~g~~~~~~~~~~l~ 62 (95)
++..++..++++|+|.|...++...++.++.|+ +|...+++.....++|..+++.++..+.
T Consensus 116 ~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~ 177 (438)
T PRK10133 116 NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_pred CHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667788999999999999998988888775 6666789999988899888888876543
No 97
>PRK03633 putative MFS family transporter protein; Provisional
Probab=98.00 E-value=2.2e-05 Score=53.98 Aligned_cols=63 Identities=11% Similarity=0.047 Sum_probs=52.3
Q ss_pred chhHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhh
Q psy12271 2 SSHFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLES 64 (95)
Q Consensus 2 ~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~ 64 (95)
++..++..++++|++.+...+.....+.++.+ ++|++++++...+..+|..+++++.+.+.+.
T Consensus 93 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 156 (381)
T PRK03633 93 GFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTE 156 (381)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 34455667799999998888877777777776 6999999999999999999999999988764
No 98
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=97.99 E-value=2.8e-05 Score=56.10 Aligned_cols=61 Identities=18% Similarity=0.207 Sum_probs=53.0
Q ss_pred HHHhhccccchhHHHHHhhhhcc---chHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271 12 FVGIGAGLSFPPGIFIVTSYFLK---YRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE 72 (95)
Q Consensus 12 l~G~g~g~~~~~~~~~~~~~f~~---~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~ 72 (95)
+.++|.|...+...+++++.||+ +|..+.++...+..+|..++|.+.+++.+.+|||+.|.
T Consensus 109 li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~ 172 (493)
T PRK15462 109 IIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFG 172 (493)
T ss_pred HHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHH
Confidence 34466676677777899999973 69999999999999999999999999999999999887
No 99
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=97.98 E-value=5.8e-05 Score=52.34 Aligned_cols=66 Identities=14% Similarity=0.109 Sum_probs=53.2
Q ss_pred HHHHHHHHhhccccchhHHHHHhhhhccchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhHH
Q psy12271 7 FSYGVFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTEK 73 (95)
Q Consensus 7 ~~~~~l~G~g~g~~~~~~~~~~~~~f~~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~ 73 (95)
+...++.|++.+...+ ....+.+..|++||++.|+.+....+|..++|++.+.+.+.+||+..+++
T Consensus 320 ~~~~~~~G~~~~~~~~-~~~~~~~~~~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~ 385 (402)
T TIGR00897 320 LIIAIALGIFLAGYVP-LAAVFPTLAPKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWI 385 (402)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHhhCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHH
Confidence 3445666766665433 34566777788999999999999999999999999999999999988773
No 100
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=97.96 E-value=2.2e-05 Score=53.88 Aligned_cols=67 Identities=15% Similarity=0.109 Sum_probs=57.5
Q ss_pred HHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271 6 AFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE 72 (95)
Q Consensus 6 ~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~ 72 (95)
++...++.|++.+...+...+.+.+..| ++||+++++......+|..++|++.+.+.+++||++.|.
T Consensus 314 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~ 381 (408)
T PRK09874 314 LGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFL 381 (408)
T ss_pred HHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHH
Confidence 3445567888888888888787777777 589999999999999999999999999999999999887
No 101
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=97.93 E-value=1.6e-07 Score=65.56 Aligned_cols=71 Identities=15% Similarity=0.144 Sum_probs=58.1
Q ss_pred chhHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHh---hcChHHhhH
Q psy12271 2 SSHFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLE---SYGYRRDTE 72 (95)
Q Consensus 2 ~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~---~~gw~~~~~ 72 (95)
++..+...+++.|++.|...+....++.+..| ++|++...+......+|..++..+...+.. ..+||..+.
T Consensus 101 ~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~ 175 (451)
T PF00083_consen 101 NFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLI 175 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 45667778899999999999999999999997 699999999999999998887776654433 245998765
No 102
>KOG0254|consensus
Probab=97.89 E-value=5.6e-05 Score=54.25 Aligned_cols=84 Identities=14% Similarity=0.023 Sum_probs=65.4
Q ss_pred chhHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhh--cChHHhhH------
Q psy12271 2 SSHFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLES--YGYRRDTE------ 72 (95)
Q Consensus 2 ~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~--~gw~~~~~------ 72 (95)
++..++..|++.|+|.|........++++.-| +.||...++......+|..++ .+.+...++ ++||..+.
T Consensus 141 ~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~ 219 (513)
T KOG0254|consen 141 SWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLG-YCINYGTSKVYAGWRIPLGLALIPA 219 (513)
T ss_pred hHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhhccCCccHHHHHHHHHHHH
Confidence 45678889999999999998888899999998 599999999999999888777 666665554 48996655
Q ss_pred -----HhccCccchhhhhH
Q psy12271 73 -----KVREKGEEEEEEEE 86 (95)
Q Consensus 73 -----~~~~~p~~~~~~~~ 86 (95)
.+.-.||++++.-.
T Consensus 220 ~~~~~~~~~~pesp~~L~~ 238 (513)
T KOG0254|consen 220 VILALGMLFLPESPRWLIE 238 (513)
T ss_pred HHHHHHHHhCCCChHHHHH
Confidence 22346666655543
No 103
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=97.87 E-value=9.1e-05 Score=50.46 Aligned_cols=63 Identities=16% Similarity=0.114 Sum_probs=51.5
Q ss_pred HHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcC-hHHhhHH
Q psy12271 11 VFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYG-YRRDTEK 73 (95)
Q Consensus 11 ~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~g-w~~~~~~ 73 (95)
++.|+..+...+.....+.+.+| ++|++++|+......+|..++|++.+++.++.| |+..+..
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~~~ 400 (405)
T TIGR00891 336 FFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTALAS 400 (405)
T ss_pred HHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHh
Confidence 44454445555666678889998 599999999999999999999999999999999 8877653
No 104
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=97.83 E-value=9.2e-05 Score=49.59 Aligned_cols=62 Identities=16% Similarity=0.059 Sum_probs=54.0
Q ss_pred HHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcC
Q psy12271 5 FAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYG 66 (95)
Q Consensus 5 ~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~g 66 (95)
.++...++.|++.+...+....++.+.+| ++|+++.|+......++..+++++.+.+.+.+|
T Consensus 303 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~g 365 (365)
T TIGR00900 303 LFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHLG 365 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34455678888888888888899999998 589999999999999999999999999988765
No 105
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=97.82 E-value=3.2e-05 Score=52.23 Aligned_cols=67 Identities=16% Similarity=0.064 Sum_probs=53.9
Q ss_pred HHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHH-HHhhHHHHHHHHHHHHHHHhhcC-hHHhhHH
Q psy12271 7 FSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIA-ISGSALGSIFLPPFLRYLLESYG-YRRDTEK 73 (95)
Q Consensus 7 ~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~-~~~~~~g~~~~~~~~~~l~~~~g-w~~~~~~ 73 (95)
+...++.|++.+...++....+.+.+| ++|++++++. ..+..+|..++|++.+++.++.| |+..++.
T Consensus 316 ~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~ 385 (394)
T TIGR00883 316 FFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYY 385 (394)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHH
Confidence 334456677777778888899999998 5899999984 56667889999999999999998 8877653
No 106
>TIGR00893 2A0114 d-galactonate transporter.
Probab=97.77 E-value=0.00012 Score=49.23 Aligned_cols=53 Identities=19% Similarity=0.228 Sum_probs=48.6
Q ss_pred cchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcC-hHHhhH
Q psy12271 20 SFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYG-YRRDTE 72 (95)
Q Consensus 20 ~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~g-w~~~~~ 72 (95)
..+....++.+.+| ++|++++|+......+|..+++.+.+.+.+..| |+..|.
T Consensus 328 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~ 382 (399)
T TIGR00893 328 AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALM 382 (399)
T ss_pred hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHH
Confidence 67888889999998 599999999999999999999999999999988 998876
No 107
>PRK11663 regulatory protein UhpC; Provisional
Probab=97.77 E-value=0.00011 Score=51.52 Aligned_cols=48 Identities=17% Similarity=0.014 Sum_probs=43.5
Q ss_pred HHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271 25 IFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE 72 (95)
Q Consensus 25 ~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~ 72 (95)
...+++.+| ++|++++|+.+....+|..++|++.+++.+.+||+..|.
T Consensus 359 ~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~ 407 (434)
T PRK11663 359 GMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFV 407 (434)
T ss_pred HHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHH
Confidence 345678887 599999999999999999999999999999999999887
No 108
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=97.77 E-value=0.00014 Score=51.52 Aligned_cols=47 Identities=23% Similarity=0.245 Sum_probs=40.7
Q ss_pred HHHhhhhc-cchHHHHHHHHHhhHH-HHHHHHHHHHHHHh------------hcChHHhhH
Q psy12271 26 FIVTSYFL-KYRGLANGIAISGSAL-GSIFLPPFLRYLLE------------SYGYRRDTE 72 (95)
Q Consensus 26 ~~~~~~f~-~~rg~a~gi~~~~~~~-g~~~~~~~~~~l~~------------~~gw~~~~~ 72 (95)
..+.+.+| +.||++.|+.+....+ |..+++++.+++.+ ..||+..|.
T Consensus 372 ~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~ 432 (467)
T PRK09556 372 VAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFA 432 (467)
T ss_pred HHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHH
Confidence 45668898 4999999999988886 77999999999999 678999887
No 109
>PRK03633 putative MFS family transporter protein; Provisional
Probab=97.75 E-value=0.00017 Score=49.63 Aligned_cols=63 Identities=14% Similarity=0.111 Sum_probs=53.3
Q ss_pred HHHHHhhccccchhHHHHHhhhhcc-chHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271 10 GVFVGIGAGLSFPPGIFIVTSYFLK-YRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE 72 (95)
Q Consensus 10 ~~l~G~g~g~~~~~~~~~~~~~f~~-~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~ 72 (95)
.++.|++....+|.....+.+..|+ +++.+.+......++|..++|++.+++.+++||++.|.
T Consensus 292 ~~l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~ 355 (381)
T PRK03633 292 LFILGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFI 355 (381)
T ss_pred HHHHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHH
Confidence 3556666566788888888999875 77888888888999999999999999999999998887
No 110
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=97.69 E-value=0.00031 Score=49.54 Aligned_cols=47 Identities=17% Similarity=0.185 Sum_probs=39.3
Q ss_pred HHHhhhhc-cchHHHHHHHHHhhHHHHHH-HHHHHHHHHhhcChHHhhH
Q psy12271 26 FIVTSYFL-KYRGLANGIAISGSALGSIF-LPPFLRYLLESYGYRRDTE 72 (95)
Q Consensus 26 ~~~~~~f~-~~rg~a~gi~~~~~~~g~~~-~~~~~~~l~~~~gw~~~~~ 72 (95)
..+.+.+| ++||+++|+.+....+|..+ +|.+.+++.+++||+..|.
T Consensus 370 ~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~ 418 (452)
T PRK11273 370 LHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFM 418 (452)
T ss_pred HHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHH
Confidence 34567888 58999999998887787654 7899999999999998886
No 111
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=97.67 E-value=0.0002 Score=50.06 Aligned_cols=67 Identities=18% Similarity=0.191 Sum_probs=57.3
Q ss_pred HHHHHHHHHhhccccchhHHHHHhhhhccchHHHHHHHHHhhHHHHHHHHHHHHHHHhhc-ChHHhhH
Q psy12271 6 AFSYGVFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLLESY-GYRRDTE 72 (95)
Q Consensus 6 ~~~~~~l~G~g~g~~~~~~~~~~~~~f~~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~-gw~~~~~ 72 (95)
.+...++.|+|.+......-.++-++||||-+..+|++.+..++|..+++.+...+.++. |||+...
T Consensus 102 L~~gt~l~G~gIav~nVLLPslIK~~Fpk~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~ 169 (395)
T COG2807 102 LFLGTLLAGAGIAVINVLLPSLIKRDFPKRVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALG 169 (395)
T ss_pred HHHHHHHHHhhHHHHHHhhhHHHHhhcccchhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHH
Confidence 344457788888888888889999999999999999999999999888888888888777 7998665
No 112
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=97.67 E-value=0.00025 Score=50.60 Aligned_cols=64 Identities=16% Similarity=0.008 Sum_probs=43.7
Q ss_pred HHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcC-hHHhh
Q psy12271 8 SYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYG-YRRDT 71 (95)
Q Consensus 8 ~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~g-w~~~~ 71 (95)
...++.|++.+........++.+.|| +.|++++|+......++..++|.+.+++.+..+ |+..+
T Consensus 347 ~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~ 412 (490)
T PRK10642 347 AGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPA 412 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHH
Confidence 33455555555445555667778898 599999998555555667888999999887654 56433
No 113
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=97.67 E-value=0.00017 Score=54.43 Aligned_cols=59 Identities=7% Similarity=-0.036 Sum_probs=49.3
Q ss_pred HHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhh
Q psy12271 6 AFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLES 64 (95)
Q Consensus 6 ~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~ 64 (95)
+++..++.|+..+..++....++++++| ++|++++|+..+...+|.+++|++.+.+...
T Consensus 651 ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~ 710 (742)
T TIGR01299 651 MIALLCLFGGLSIAAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGI 710 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344456676667778888889999999 5999999999999999999999999988763
No 114
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=97.64 E-value=0.00016 Score=49.86 Aligned_cols=51 Identities=24% Similarity=0.236 Sum_probs=44.9
Q ss_pred hhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271 22 PPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE 72 (95)
Q Consensus 22 ~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~ 72 (95)
+....++++.+| ++|++++++......+|.++++.+.+.+.++.||++.|+
T Consensus 402 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~ 453 (481)
T TIGR00879 402 PVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFI 453 (481)
T ss_pred CeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceeh
Confidence 455566789998 599999999999999999999999999999999998765
No 115
>PRK03699 putative transporter; Provisional
Probab=97.58 E-value=0.00035 Score=48.31 Aligned_cols=65 Identities=6% Similarity=-0.009 Sum_probs=53.8
Q ss_pred HHHHHHHhhccccchhHHHHHhhhhccchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271 8 SYGVFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE 72 (95)
Q Consensus 8 ~~~~l~G~g~g~~~~~~~~~~~~~f~~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~ 72 (95)
...++.|++.+..++.......+..|++++...++......+|..++|++.+++.+.+|++..++
T Consensus 299 ~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~ 363 (394)
T PRK03699 299 YAILGLGFFSSAIYTTIITLGSQQTKVASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALL 363 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhh
Confidence 34466777666677777777777777777888999999999999999999999999999998876
No 116
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=97.56 E-value=0.00023 Score=52.57 Aligned_cols=70 Identities=20% Similarity=0.232 Sum_probs=51.6
Q ss_pred chhHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271 2 SSHFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE 72 (95)
Q Consensus 2 ~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~ 72 (95)
+..-|+....+.|+|.|..... ...+++..| |.|....++.....-....+++.+.+.+..+-+|||+|+
T Consensus 130 ~~~~~iag~~l~GvgaG~~~~~-~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~ 200 (599)
T PF06609_consen 130 NMNTFIAGMVLYGVGAGVQELA-ALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFY 200 (599)
T ss_pred cHHHHHHHHHHHHHhhHHHHHH-HHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHH
Confidence 3456778888899987766543 445889998 788888777766655555566777777766779999998
No 117
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=97.48 E-value=0.0012 Score=45.50 Aligned_cols=57 Identities=14% Similarity=0.030 Sum_probs=44.6
Q ss_pred hccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271 16 GAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE 72 (95)
Q Consensus 16 g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~ 72 (95)
..+...+..-.+..++.+ ++++...+....+..+|..+++.+.+++.+++|||..|+
T Consensus 110 ~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~ 167 (390)
T TIGR02718 110 ASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFL 167 (390)
T ss_pred HHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 333344444455667776 466888888999999999999999999999999998887
No 118
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=97.47 E-value=0.00052 Score=47.29 Aligned_cols=65 Identities=18% Similarity=0.084 Sum_probs=51.8
Q ss_pred HHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcC-hHHhhH
Q psy12271 8 SYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYG-YRRDTE 72 (95)
Q Consensus 8 ~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~g-w~~~~~ 72 (95)
...++.|++.+...+....++.+.+| ++|++++|+......+|..++|++.+.+.++.+ |...+.
T Consensus 313 ~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~ 379 (406)
T PRK11551 313 LAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIG 379 (406)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHH
Confidence 34456677666667777788899998 599999999999999999999999999988654 444443
No 119
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=97.47 E-value=0.00076 Score=46.49 Aligned_cols=67 Identities=4% Similarity=-0.042 Sum_probs=55.9
Q ss_pred hHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHH-HhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271 4 HFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAI-SGSALGSIFLPPFLRYLLESYGYRRDTE 72 (95)
Q Consensus 4 ~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~-~~~~~g~~~~~~~~~~l~~~~gw~~~~~ 72 (95)
..++...++.|+..+...++...++++. | ++|++..++++ ...++|..+++.+.+++.+++|. ..|.
T Consensus 294 ~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~ 362 (382)
T TIGR00902 294 PLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFV 362 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHH
Confidence 3344456899999999999999999988 7 58899999986 57889999999999999999986 4444
No 120
>KOG0569|consensus
Probab=97.45 E-value=0.00053 Score=49.52 Aligned_cols=71 Identities=18% Similarity=0.103 Sum_probs=58.6
Q ss_pred chhHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHH-HHHH-hhcChHHhhH
Q psy12271 2 SSHFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFL-RYLL-ESYGYRRDTE 72 (95)
Q Consensus 2 ~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~-~~l~-~~~gw~~~~~ 72 (95)
...+++..+++.|+..|.......-++.+.-| +.||........+..+|..++..++ ..+. +.-.|++.+.
T Consensus 115 ~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~ 188 (485)
T KOG0569|consen 115 SFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLA 188 (485)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHH
Confidence 45778899999999999988888889999999 5999999999999999999986555 3444 3345988775
No 121
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=97.43 E-value=0.0013 Score=46.28 Aligned_cols=59 Identities=17% Similarity=0.204 Sum_probs=43.0
Q ss_pred Hhhccccc-hhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHH------HHhhcChHHhhH
Q psy12271 14 GIGAGLSF-PPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRY------LLESYGYRRDTE 72 (95)
Q Consensus 14 G~g~g~~~-~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~------l~~~~gw~~~~~ 72 (95)
+.+.+..+ +....++++.+| ++|++++|+......+|.++++.+.+. +.++++|++.|+
T Consensus 374 ~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 440 (479)
T PRK10077 374 VAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYW 440 (479)
T ss_pred HHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHH
Confidence 33444333 566788999998 599999999998888888877655543 446788887775
No 122
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=97.42 E-value=0.0008 Score=48.10 Aligned_cols=70 Identities=17% Similarity=0.119 Sum_probs=59.9
Q ss_pred hhHHHHHHHHHHhhccccchhHHHHHhhhhcc-chHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271 3 SHFAFSYGVFVGIGAGLSFPPGIFIVTSYFLK-YRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE 72 (95)
Q Consensus 3 ~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~~-~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~ 72 (95)
+..++...++.|+|+....|.....+++.-|+ .||+++|++.....+|..+++.+........+|.+.|.
T Consensus 381 ~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~ 451 (475)
T TIGR00924 381 PWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFG 451 (475)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHH
Confidence 33455566889999999999999999999984 99999999999999999999999988776667777665
No 123
>PRK03893 putative sialic acid transporter; Provisional
Probab=97.40 E-value=0.0005 Score=48.60 Aligned_cols=52 Identities=15% Similarity=0.139 Sum_probs=44.8
Q ss_pred chhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271 21 FPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE 72 (95)
Q Consensus 21 ~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~ 72 (95)
.+....++.+.+| ++|++++|+......+|..++|.+.+.+.+.+||+..+.
T Consensus 384 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~ 436 (496)
T PRK03893 384 SGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALA 436 (496)
T ss_pred chhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHH
Confidence 3445567788888 599999999999999999999999999999999997764
No 124
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=97.39 E-value=0.001 Score=46.89 Aligned_cols=61 Identities=18% Similarity=0.256 Sum_probs=53.3
Q ss_pred HHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHH-hhHHHHHHHHHHHHHHHhhcChHHhh
Q psy12271 11 VFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAIS-GSALGSIFLPPFLRYLLESYGYRRDT 71 (95)
Q Consensus 11 ~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~-~~~~g~~~~~~~~~~l~~~~gw~~~~ 71 (95)
++.|+..+..+.++..++++..| +.|+++.+++.. ..++|..++..++|++.+++|-+..|
T Consensus 309 ~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~ 371 (400)
T PF03825_consen 309 LLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMF 371 (400)
T ss_pred hhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhh
Confidence 45899999999999999999999 589999999865 57899999999999999998866544
No 125
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=97.35 E-value=0.00065 Score=46.03 Aligned_cols=61 Identities=15% Similarity=0.226 Sum_probs=52.9
Q ss_pred HHHHhhccccchhHHHHHhhhhccchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271 11 VFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE 72 (95)
Q Consensus 11 ~l~G~g~g~~~~~~~~~~~~~f~~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~ 72 (95)
++.|++.+..+|...+...+.+|++.+.+.++. ....+|..+.|++.+.+.+.+|.+..|+
T Consensus 238 ~l~g~~~s~i~P~~~s~a~~~~~~~~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~ 298 (310)
T TIGR01272 238 LALGLFNSIMFPTIFSLALNALGRHTSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFA 298 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHH
Confidence 467889999999999999999998778888886 4566899999999999999999888776
No 126
>TIGR00895 2A0115 benzoate transport.
Probab=97.34 E-value=0.00053 Score=46.47 Aligned_cols=56 Identities=21% Similarity=0.251 Sum_probs=48.4
Q ss_pred HHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy12271 6 AFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYL 61 (95)
Q Consensus 6 ~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l 61 (95)
.+...++.|++.+...+....++.+.+| ++|++++|+......+|..++|++.+++
T Consensus 341 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 341 LLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence 3445577888888888888999999998 5999999999999999999999998875
No 127
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=97.33 E-value=0.0018 Score=45.02 Aligned_cols=65 Identities=14% Similarity=0.058 Sum_probs=55.6
Q ss_pred HHHHHHHhhccccchhHHHHHhhhhccchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271 8 SYGVFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE 72 (95)
Q Consensus 8 ~~~~l~G~g~g~~~~~~~~~~~~~f~~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~ 72 (95)
...++.|++.+...+...+.+.+..|++++++.++......+|..+++.+.+++.+.+|++..+.
T Consensus 310 ~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~ 374 (394)
T PRK10213 310 GVAIIWGLTFALVPVGWSTWITRSLADQAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLM 374 (394)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHH
Confidence 34567788888888888888888888888888898888999999999999999999999887776
No 128
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=97.27 E-value=0.00059 Score=47.08 Aligned_cols=61 Identities=10% Similarity=0.001 Sum_probs=41.1
Q ss_pred HHHHHhhccccchhHHHHHhhhhccchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271 10 GVFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE 72 (95)
Q Consensus 10 ~~l~G~g~g~~~~~~~~~~~~~f~~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~ 72 (95)
+++.|++.+...+....++.+. .++++...|.......+|..+++++.+.+.+ ++||..|+
T Consensus 106 ~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~-~~~~~~f~ 166 (396)
T TIGR00882 106 GLYLGFVFSAGAGAIEAYIEKV-SRNSNFEYGKARMFGCVGWALCASIAGILFS-IDPQIVFW 166 (396)
T ss_pred HHHHHHHhccchhhHHHHHHHh-hhhcccccchhhhhcccHHHHHHHHHhhhhc-cCchHHHH
Confidence 4455555555555544443332 2344567788888889999999999887754 69998886
No 129
>PRK12307 putative sialic acid transporter; Provisional
Probab=97.25 E-value=0.0024 Score=44.29 Aligned_cols=49 Identities=20% Similarity=0.201 Sum_probs=41.6
Q ss_pred hhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHh
Q psy12271 22 PPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRD 70 (95)
Q Consensus 22 ~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~ 70 (95)
+....++.+.+| ++||+++|+......++..++|.+.+++.+.+|....
T Consensus 340 ~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~~~ 389 (426)
T PRK12307 340 GLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMGLGAA 389 (426)
T ss_pred HHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcccHHHH
Confidence 334456788998 5899999999999999999999999999998887654
No 130
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=97.23 E-value=0.00056 Score=48.19 Aligned_cols=59 Identities=8% Similarity=0.031 Sum_probs=43.6
Q ss_pred HhhccccchhHHHHHhhhhccchHHHHHHHHHhhHHHHHHHHHHHHHHHhhc---ChHHhhH
Q psy12271 14 GIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLLESY---GYRRDTE 72 (95)
Q Consensus 14 G~g~g~~~~~~~~~~~~~f~~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~---gw~~~~~ 72 (95)
+.+.+...+.......+..|+.+|.++|+.+....+|..++|.+.+++.+.. +|+..|.
T Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~ 433 (465)
T TIGR00894 372 NAVSSGPLAGVLINSLDLAPRFLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFL 433 (465)
T ss_pred HHHhhhhhhhhhhchhhcChhHHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHH
Confidence 3333333444444555667889999999999999999999999999987653 3777766
No 131
>PRK10504 putative transporter; Provisional
Probab=97.22 E-value=0.002 Score=45.43 Aligned_cols=60 Identities=12% Similarity=0.026 Sum_probs=50.4
Q ss_pred HHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChH
Q psy12271 9 YGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYR 68 (95)
Q Consensus 9 ~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~ 68 (95)
..++.|++.+..+++...++.+-+| +.++.+.++.+....+|..+++.+.+.+.+..|+.
T Consensus 359 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~g~~ 419 (471)
T PRK10504 359 VLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLFGQQ 419 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3456778878778888888888887 69999999999999999999999999988877653
No 132
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=97.13 E-value=0.0026 Score=43.99 Aligned_cols=62 Identities=11% Similarity=-0.169 Sum_probs=47.4
Q ss_pred HHHHHHHhhccccchhHHHHHhhhhccchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHH
Q psy12271 8 SYGVFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRR 69 (95)
Q Consensus 8 ~~~~l~G~g~g~~~~~~~~~~~~~f~~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~ 69 (95)
...++.|+|.+...+..........+++||++.++......+|..+++.+.+.+.+..++..
T Consensus 314 ~~~~~~g~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~ 375 (406)
T PRK15402 314 AGLSLYAFGIGLANAGLYRLTLFSSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNGL 375 (406)
T ss_pred HHHHHHHHHHHHHhhhHHHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCchHH
Confidence 34456777777666655454444445799999999999999999999999999888777654
No 133
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=97.12 E-value=0.0037 Score=43.08 Aligned_cols=61 Identities=16% Similarity=0.199 Sum_probs=50.3
Q ss_pred HHHhhccccchhHHHHHhhhhc--cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271 12 FVGIGAGLSFPPGIFIVTSYFL--KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE 72 (95)
Q Consensus 12 l~G~g~g~~~~~~~~~~~~~f~--~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~ 72 (95)
+.+++.+...+.....+.++.+ +++++..++.++...+|..+++.+.+.+.+..|++..|.
T Consensus 312 ~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~ 374 (390)
T TIGR02718 312 FGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFL 374 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHH
Confidence 3445556666777777777764 578999999999999999999999999999999988876
No 134
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=97.12 E-value=0.0015 Score=43.42 Aligned_cols=56 Identities=13% Similarity=0.128 Sum_probs=43.1
Q ss_pred HHHHHHhhccccchhHHHHHhhhhccchHHHHHHHHHhhHHHHHHHHHHHHHHHhh
Q psy12271 9 YGVFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLLES 64 (95)
Q Consensus 9 ~~~l~G~g~g~~~~~~~~~~~~~f~~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~ 64 (95)
+.++.|.+.+....++.....+.||++||++.|+.-...+++..+...+...+.+.
T Consensus 102 ~~~l~~~s~~~~~ta~lvt~~~NFP~~RG~vvgilk~~~GLSaai~t~i~~~~f~~ 157 (250)
T PF06813_consen 102 FLFLGGNSSCWFNTASLVTCVRNFPRSRGTVVGILKGFFGLSAAIFTQIYSAFFGD 157 (250)
T ss_pred HHHHHcccHHHhhhHHHHHHHHhCccccCceehhhhHHHHhHHHHHHHHHHHHcCC
Confidence 33455565555556666666688999999999999999999999988888776654
No 135
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=97.11 E-value=0.0022 Score=46.71 Aligned_cols=68 Identities=18% Similarity=0.175 Sum_probs=60.8
Q ss_pred HHHHHHHHHHhhccccchhHHHHHhhhhcc-chHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271 5 FAFSYGVFVGIGAGLSFPPGIFIVTSYFLK-YRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE 72 (95)
Q Consensus 5 ~~~~~~~l~G~g~g~~~~~~~~~~~~~f~~-~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~ 72 (95)
+++...++.|++.+...|+-..++.+..|+ +...++++..+..++...++|.+++.++..+|-.++|.
T Consensus 105 ~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~ 173 (524)
T PF05977_consen 105 LLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFL 173 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 445566899999999999999999999995 88999999999999999999999999999888888776
No 136
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=97.10 E-value=0.0021 Score=44.66 Aligned_cols=67 Identities=15% Similarity=0.160 Sum_probs=47.4
Q ss_pred HHHHHHHHHhhccccchhHHHHHhhhh-c-cchHHHHHHHHHhhHHHHHHHHHHHHHHHh-------hcChHHhhH
Q psy12271 6 AFSYGVFVGIGAGLSFPPGIFIVTSYF-L-KYRGLANGIAISGSALGSIFLPPFLRYLLE-------SYGYRRDTE 72 (95)
Q Consensus 6 ~~~~~~l~G~g~g~~~~~~~~~~~~~f-~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~-------~~gw~~~~~ 72 (95)
++...++.+++.++..++..++..+.. + ++|+++.++...+..+|..+.+.+...+.. ..|||+.+.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~ 177 (437)
T TIGR00792 102 AYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFAL 177 (437)
T ss_pred HHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHH
Confidence 344446667777776666667777766 3 699999999988888887777666555542 468998765
No 137
>KOG0253|consensus
Probab=97.09 E-value=0.0026 Score=45.23 Aligned_cols=69 Identities=17% Similarity=0.198 Sum_probs=54.7
Q ss_pred chhHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271 2 SSHFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE 72 (95)
Q Consensus 2 ~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~ 72 (95)
++....+++-+.|+|.|. +|...++-.+.-| .+|.+-+-.. .-+.+|.++...+...++.++||||.+.
T Consensus 165 nf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~gwr~~l~ 234 (528)
T KOG0253|consen 165 NFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFGWRYLLF 234 (528)
T ss_pred CeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 344455666778888888 7777777777777 4887776666 7788999999999999999999999765
No 138
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=97.09 E-value=0.00076 Score=46.95 Aligned_cols=57 Identities=21% Similarity=0.088 Sum_probs=48.7
Q ss_pred HHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhc
Q psy12271 9 YGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESY 65 (95)
Q Consensus 9 ~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~ 65 (95)
..++.|++.+...|...+++.+..| ++||+++|+.+....+|..+++.+.+++.+..
T Consensus 303 ~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~ 360 (400)
T PRK11646 303 LICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLG 360 (400)
T ss_pred HHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHH
Confidence 3455677777777788889999998 59999999999999999999999999998763
No 139
>PRK11010 ampG muropeptide transporter; Validated
Probab=97.06 E-value=0.0042 Score=44.58 Aligned_cols=57 Identities=14% Similarity=0.250 Sum_probs=47.9
Q ss_pred hccccchhHHHHHhhhhcc-chHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271 16 GAGLSFPPGIFIVTSYFLK-YRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE 72 (95)
Q Consensus 16 g~g~~~~~~~~~~~~~f~~-~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~ 72 (95)
..|...++...+..+..++ .+++..++.++...+|..+.+++.+++.+.+||+..|.
T Consensus 329 ~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~ 386 (491)
T PRK11010 329 CGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYL 386 (491)
T ss_pred HHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHH
Confidence 3444556667777888874 88999999999999999999999999999999998776
No 140
>PRK09952 shikimate transporter; Provisional
Probab=97.06 E-value=0.0045 Score=43.59 Aligned_cols=62 Identities=18% Similarity=0.236 Sum_probs=46.7
Q ss_pred HHHHhhccccchhHHHHHhhhhc-cchHHHHHHHH-HhhHHHHHHHHHHHHHHHhhc--ChHHhhH
Q psy12271 11 VFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAI-SGSALGSIFLPPFLRYLLESY--GYRRDTE 72 (95)
Q Consensus 11 ~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~-~~~~~g~~~~~~~~~~l~~~~--gw~~~~~ 72 (95)
++.+++.+...+....++++.|| +.|+++.++.. .+..+|..++|.+.+++.+.. +|+..+.
T Consensus 351 ~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~ 416 (438)
T PRK09952 351 MLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAI 416 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHH
Confidence 44466666667777788999999 58888988854 455688999999999998754 3766554
No 141
>PRK09528 lacY galactoside permease; Reviewed
Probab=97.05 E-value=0.0016 Score=45.28 Aligned_cols=40 Identities=15% Similarity=0.053 Sum_probs=33.6
Q ss_pred hccchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271 32 FLKYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE 72 (95)
Q Consensus 32 f~~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~ 72 (95)
++++++++.|.......+|..+++++.+.+.+ .+|++.|+
T Consensus 135 ~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~-~~~~~~f~ 174 (420)
T PRK09528 135 VSRRSGFEYGRARMWGSLGWALCAFIAGILFN-INPQINFW 174 (420)
T ss_pred HHhhccccchhhHHhhhHHHHHHHHHHHHHHh-cCchHhHH
Confidence 34567888899999999999999999998876 58998877
No 142
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=97.01 E-value=0.0043 Score=42.72 Aligned_cols=65 Identities=3% Similarity=-0.106 Sum_probs=51.4
Q ss_pred hHHHHHHHHHHhhccccchhHHHHHhhhhccchHHHHHHHH-HhhHHHHHHHHHHHHHHHhhcChH
Q psy12271 4 HFAFSYGVFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAI-SGSALGSIFLPPFLRYLLESYGYR 68 (95)
Q Consensus 4 ~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~~~rg~a~gi~~-~~~~~g~~~~~~~~~~l~~~~gw~ 68 (95)
..++...++.|++.+...+....++.+..+.+++++.++.. ....+|..+++.+.+.+.+.+|+.
T Consensus 294 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~~ 359 (382)
T PRK11128 294 PWLIVIQILHCGTFTVCHLAAMRYIAARPGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGAG 359 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 34455667888888877788778777775567889999886 566788899999999999999874
No 143
>KOG2615|consensus
Probab=97.00 E-value=0.00037 Score=49.24 Aligned_cols=61 Identities=23% Similarity=0.185 Sum_probs=51.7
Q ss_pred chhHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHh
Q psy12271 2 SSHFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLE 63 (95)
Q Consensus 2 ~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~ 63 (95)
+++.+++.|++.|+.=| ...+.-+++++.++ |+|+++++.+....++|.+++|.+++++.+
T Consensus 120 ~F~afv~aR~l~Gi~kg-nl~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 120 NFAAFVLARFLGGIFKG-NLSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred HHHHHHHHHHhhhhccC-chHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence 45677887899998644 34555688899986 799999999999999999999999999988
No 144
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=96.97 E-value=0.0042 Score=43.08 Aligned_cols=62 Identities=19% Similarity=0.202 Sum_probs=50.1
Q ss_pred HHHHhhccccchhHHHHHhhhhc--cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcC-hHHhhH
Q psy12271 11 VFVGIGAGLSFPPGIFIVTSYFL--KYRGLANGIAISGSALGSIFLPPFLRYLLESYG-YRRDTE 72 (95)
Q Consensus 11 ~l~G~g~g~~~~~~~~~~~~~f~--~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~g-w~~~~~ 72 (95)
++.|++.+..++.......+.++ ++|+++.|+......++..++|++.+++.++.| +...|.
T Consensus 300 ~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~ 364 (393)
T PRK09705 300 MVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWA 364 (393)
T ss_pred HHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHH
Confidence 45677878777777666667663 489999999999999999999999999999886 555554
No 145
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=96.96 E-value=0.0015 Score=45.61 Aligned_cols=48 Identities=15% Similarity=0.169 Sum_probs=41.0
Q ss_pred HHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcC-hHHhhHH
Q psy12271 26 FIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYG-YRRDTEK 73 (95)
Q Consensus 26 ~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~g-w~~~~~~ 73 (95)
....+.+| ++|++++|+.+....+|.+++|.+.+.+.+..| |++.|++
T Consensus 356 ~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~ 405 (412)
T TIGR02332 356 TTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATGSFNSGLWF 405 (412)
T ss_pred hhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhHHH
Confidence 34455677 699999999999999999999999999999875 9988764
No 146
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=96.95 E-value=0.011 Score=41.07 Aligned_cols=63 Identities=16% Similarity=0.183 Sum_probs=50.3
Q ss_pred HHHHHHHHHhhccccchhHHHHHhhhhc--------cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChH
Q psy12271 6 AFSYGVFVGIGAGLSFPPGIFIVTSYFL--------KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYR 68 (95)
Q Consensus 6 ~~~~~~l~G~g~g~~~~~~~~~~~~~f~--------~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~ 68 (95)
++...++.|++.+...+...+++++..+ +++|.+.|+.+....+|..+++.+.+.+.+..|+.
T Consensus 314 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~~ 384 (437)
T TIGR00792 314 ILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGYV 384 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3344466778888777777777777643 35799999999999999999999999999888774
No 147
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=96.91 E-value=0.0027 Score=43.84 Aligned_cols=67 Identities=15% Similarity=0.115 Sum_probs=47.3
Q ss_pred HHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHH-HHHhhHHHHHHHHHHHHHHHhhcChHHhhHH
Q psy12271 7 FSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGI-AISGSALGSIFLPPFLRYLLESYGYRRDTEK 73 (95)
Q Consensus 7 ~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~ 73 (95)
+...++.|++...........+.+.++ +.+++..+. .+....+|.++++.+.+++.+.+|++..|.+
T Consensus 311 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~ 379 (396)
T TIGR00882 311 VILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLV 379 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHH
Confidence 344566776654443444445555565 355665555 5678899999999999999999999998874
No 148
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=96.89 E-value=0.011 Score=37.63 Aligned_cols=70 Identities=26% Similarity=0.438 Sum_probs=54.5
Q ss_pred hhHHHHHHHHHHhhccccchhHHHHHhhhhcc--chHHHHHHHHH-hhHHHHHHHHHHHHHHHhh--cChHHhhH
Q psy12271 3 SHFAFSYGVFVGIGAGLSFPPGIFIVTSYFLK--YRGLANGIAIS-GSALGSIFLPPFLRYLLES--YGYRRDTE 72 (95)
Q Consensus 3 ~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~~--~rg~a~gi~~~-~~~~g~~~~~~~~~~l~~~--~gw~~~~~ 72 (95)
...++..+++.|++.+...+....++.+++|+ +|+...++... ...+|..+++.+.+.+... .+||..|.
T Consensus 94 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (338)
T COG0477 94 LALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFL 168 (338)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 34555666778999888899999999999995 89999999988 4777778877666665543 68888665
No 149
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=96.84 E-value=0.00062 Score=49.16 Aligned_cols=67 Identities=18% Similarity=0.261 Sum_probs=58.9
Q ss_pred HHHHHHHHHHhhccccchhHHHHHhhhhc--c-chHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271 5 FAFSYGVFVGIGAGLSFPPGIFIVTSYFL--K-YRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE 72 (95)
Q Consensus 5 ~~~~~~~l~G~g~g~~~~~~~~~~~~~f~--~-~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~ 72 (95)
+|+.. .+.++|.|...+...+++.+.+| + ||-...++..++.++|+.+.|.+.+++.+++||+..|-
T Consensus 120 l~i~L-~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~ 189 (498)
T COG3104 120 LYIGL-ALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFG 189 (498)
T ss_pred HHHHH-HHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHH
Confidence 34444 45669999999999999999997 2 88999999999999999999999999999999998886
No 150
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=96.84 E-value=0.0068 Score=44.24 Aligned_cols=66 Identities=14% Similarity=-0.030 Sum_probs=54.7
Q ss_pred HHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271 7 FSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE 72 (95)
Q Consensus 7 ~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~ 72 (95)
+...++.|++.........+.+-+..| +.||++++++.+....+..++..+.+.+.+.+|.+.++.
T Consensus 311 ~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~ 377 (524)
T PF05977_consen 311 LIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALL 377 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 334466777766666666777778888 599999999999999999999999999999999997775
No 151
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=96.83 E-value=0.0083 Score=43.29 Aligned_cols=67 Identities=12% Similarity=0.077 Sum_probs=59.6
Q ss_pred HHHHHHHHHhhccccchhHHHHHhhhhcc-chHHHHHHHHHhhHHHHHHHHHHHHHHHhhcC-hHHhhH
Q psy12271 6 AFSYGVFVGIGAGLSFPPGIFIVTSYFLK-YRGLANGIAISGSALGSIFLPPFLRYLLESYG-YRRDTE 72 (95)
Q Consensus 6 ~~~~~~l~G~g~g~~~~~~~~~~~~~f~~-~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~g-w~~~~~ 72 (95)
|...+++.|+.+|.....+=++.++..|+ |.+...|++....-...+++|.+.+.+.+..| -|..+.
T Consensus 383 f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~ 451 (477)
T PF11700_consen 383 FWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFL 451 (477)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHH
Confidence 45566899999999999999999999996 88999999999999999999999999999887 666655
No 152
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=96.81 E-value=0.0014 Score=46.67 Aligned_cols=49 Identities=16% Similarity=0.196 Sum_probs=34.8
Q ss_pred hHHHHHhhhhccchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271 23 PGIFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE 72 (95)
Q Consensus 23 ~~~~~~~~~f~~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~ 72 (95)
....++.+..|++||.+.|+...+..+|+++++.+.+ .....+|+..|.
T Consensus 368 ~~~~~~~~~~~~~~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~ 416 (476)
T PLN00028 368 ATFGIVPFVSRRSLGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGIS 416 (476)
T ss_pred hhcccCcccChhhchhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHH
Confidence 3334445556789999999998888888888877654 222346887776
No 153
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=96.79 E-value=0.0064 Score=41.24 Aligned_cols=66 Identities=12% Similarity=0.103 Sum_probs=47.5
Q ss_pred HHHHHHHHhhccccchhHHHHHhhhhccchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271 7 FSYGVFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE 72 (95)
Q Consensus 7 ~~~~~l~G~g~g~~~~~~~~~~~~~f~~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~ 72 (95)
+...++.|++.+...+.......+.+|++|+++.++.+.....+..+.+++.+.+.+..+|...+.
T Consensus 304 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~ 369 (385)
T TIGR00710 304 IGPMMFVGIGNSMISSIAMAYALEDFPHVAGTASALFGTLRLVLGAIVGYLVSLIHGNTAWPMSLS 369 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHhccccChHHHHHH
Confidence 334456778778778888888888888899999999988777666666666665555555554443
No 154
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=96.77 E-value=0.0054 Score=47.84 Aligned_cols=65 Identities=11% Similarity=-0.101 Sum_probs=53.0
Q ss_pred HHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHh-hcChHHhhH
Q psy12271 8 SYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLE-SYGYRRDTE 72 (95)
Q Consensus 8 ~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~-~~gw~~~~~ 72 (95)
...++.|++.+...++..+++.+.+| ++||+++|+.+....++..+++++.+.+.. ..+....+.
T Consensus 339 ~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~ 405 (1140)
T PRK06814 339 IDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFSIPWIIL 405 (1140)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHH
Confidence 34567788888888888899999998 599999999999999999999999888863 445555443
No 155
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=96.73 E-value=0.017 Score=40.60 Aligned_cols=59 Identities=17% Similarity=0.123 Sum_probs=48.9
Q ss_pred HHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCh
Q psy12271 9 YGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYGY 67 (95)
Q Consensus 9 ~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw 67 (95)
..++.|+|.+...++....+.+.+| ++|+.++|+.+....+|..+++.+.+.+.++..+
T Consensus 354 ~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~~~~~ 413 (485)
T TIGR00711 354 PQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILTNRTQ 413 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888888877777777667777 6999999999999999999999999999876444
No 156
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=96.69 E-value=0.0086 Score=41.20 Aligned_cols=62 Identities=18% Similarity=0.128 Sum_probs=51.0
Q ss_pred HHHHHHHhhccccchhHHHHHhhhhccchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHH
Q psy12271 8 SYGVFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRR 69 (95)
Q Consensus 8 ~~~~l~G~g~g~~~~~~~~~~~~~f~~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~ 69 (95)
...++.|++.+...+...+...+.+|+++|++.++.+....+|..+++.+.+.+.....+..
T Consensus 304 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~ 365 (394)
T PRK11652 304 VPAALFFFGAGMLFPLATSGAMEPFPYLAGTAGALLGGLQNIGSGLAALLSAMLPQTGQFSL 365 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHccCCchHHH
Confidence 34466778888888888888888899999999999999999999999999888766544443
No 157
>PRK10054 putative transporter; Provisional
Probab=96.67 E-value=0.0081 Score=41.78 Aligned_cols=66 Identities=9% Similarity=-0.067 Sum_probs=52.5
Q ss_pred HHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271 6 AFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE 72 (95)
Q Consensus 6 ~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~ 72 (95)
.+...++.|+|.+...|.....+.+..| ++|+++.+..+ ...+|..++|++.+.+.+++|-...|.
T Consensus 301 ~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~ 367 (395)
T PRK10054 301 WGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFV 367 (395)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHH
Confidence 3445567788877777777778888888 58899988765 555899999999999999999887666
No 158
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=96.63 E-value=0.0057 Score=40.79 Aligned_cols=51 Identities=29% Similarity=0.466 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHH
Q psy12271 5 FAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLP 55 (95)
Q Consensus 5 ~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~ 55 (95)
..+...++.|++.+...+....++.+.+| ++||++.|+......+|..++|
T Consensus 301 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 301 WLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 34445677898888889999999999998 6999999999999999998876
No 159
>PRK11043 putative transporter; Provisional
Probab=96.54 E-value=0.016 Score=39.90 Aligned_cols=54 Identities=11% Similarity=0.090 Sum_probs=43.9
Q ss_pred HHHHhhccccchhHHHHHhhhhccchHHHHHHHHHhhHHHHHHHHHHHHHHHhh
Q psy12271 11 VFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLLES 64 (95)
Q Consensus 11 ~l~G~g~g~~~~~~~~~~~~~f~~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~ 64 (95)
.+.|++.+..++.......+.+|+++|+++|+.+.....+..+++++.+.+.+.
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~ 357 (401)
T PRK11043 304 CVMAAANGAIYPIVVAQALRPFPQATGKAAALQNTLQLGLCFLASLLVSALIST 357 (401)
T ss_pred HHHHHHHHHHHHHHHHHHhhhCcccChHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 456777777788777777777888999999999988888888888888888764
No 160
>PRK15075 citrate-proton symporter; Provisional
Probab=96.51 E-value=0.0076 Score=42.27 Aligned_cols=58 Identities=17% Similarity=0.197 Sum_probs=42.6
Q ss_pred HHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHH-hhHHHHHHHHHHHHHHHhhcChH
Q psy12271 11 VFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAIS-GSALGSIFLPPFLRYLLESYGYR 68 (95)
Q Consensus 11 ~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~-~~~~g~~~~~~~~~~l~~~~gw~ 68 (95)
++.|++.+...+....++.+.+| ++|+++.++... +..++..++|.+.+++.+++|++
T Consensus 339 ~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~ 398 (434)
T PRK15075 339 LWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDK 398 (434)
T ss_pred HHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCc
Confidence 33455555555556677889998 599999998644 44456778999999999988864
No 161
>TIGR00898 2A0119 cation transport protein.
Probab=96.45 E-value=0.011 Score=42.05 Aligned_cols=59 Identities=19% Similarity=0.181 Sum_probs=45.3
Q ss_pred HHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhh
Q psy12271 11 VFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDT 71 (95)
Q Consensus 11 ~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~ 71 (95)
++.+++.+..++....+.++.+| +.|++++|+......+|.+++|++.+ + ...++...+
T Consensus 418 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~-~~~~~~~~~ 477 (505)
T TIGR00898 418 VLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-L-GEKWLFLPL 477 (505)
T ss_pred HHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-H-HHHHHhhHH
Confidence 44455556667777888899999 58999999999999999999999888 3 334444443
No 162
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=96.42 E-value=0.021 Score=39.60 Aligned_cols=59 Identities=17% Similarity=0.290 Sum_probs=42.1
Q ss_pred HHHHhhccccchhHHHHHhhhhccchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271 11 VFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE 72 (95)
Q Consensus 11 ~l~G~g~g~~~~~~~~~~~~~f~~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~ 72 (95)
++.|++.+........++.+.+|. +..++.....+++..+++++.+.+.+.+||+..|.
T Consensus 315 ~~~g~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~ 373 (402)
T PRK11902 315 LCGGMGTAAFVALLMALCNRSFSA---TQYALLSALASVGRVYVGPTSGYLVEAYGWPGFYL 373 (402)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHH
Confidence 345555566666677777777763 23455555567778777889999999999998886
No 163
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=96.41 E-value=0.0069 Score=42.53 Aligned_cols=47 Identities=19% Similarity=0.215 Sum_probs=39.6
Q ss_pred HHHhhhhc-cchHHHHHHHHHhhHHH-HHHHHHHHHHHHhhcChHHhhH
Q psy12271 26 FIVTSYFL-KYRGLANGIAISGSALG-SIFLPPFLRYLLESYGYRRDTE 72 (95)
Q Consensus 26 ~~~~~~f~-~~rg~a~gi~~~~~~~g-~~~~~~~~~~l~~~~gw~~~~~ 72 (95)
..+.+.+| ++||+++|+.+....+| ..++|.+.+.+.++.||...|.
T Consensus 368 ~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~ 416 (438)
T TIGR00712 368 LHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFM 416 (438)
T ss_pred HHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHH
Confidence 35668888 59999999998877776 5688999999999999998887
No 164
>PRK10133 L-fucose transporter; Provisional
Probab=96.40 E-value=0.0074 Score=42.72 Aligned_cols=63 Identities=6% Similarity=0.117 Sum_probs=53.6
Q ss_pred HHHHHHhhccccchhHHHHHhhhhccchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcC-hHHhhH
Q psy12271 9 YGVFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLLESYG-YRRDTE 72 (95)
Q Consensus 9 ~~~l~G~g~g~~~~~~~~~~~~~f~~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~g-w~~~~~ 72 (95)
..++.|++.+..+|...+...+.++++.+.+.++... ...|..+++++.+.+.+.+| -|..|.
T Consensus 353 ~~~l~glg~~~i~P~~~s~a~~~~~~~~~~as~l~~~-~~~g~~~~~~i~G~l~~~~g~~~~~~~ 416 (438)
T PRK10133 353 ALTLCSAFMSIQYPTIFSLGIKNLGQDTKYGSSFIVM-TIIGGGIVTPVMGFVSDAAGNIPTAEL 416 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccchhhccchhHHhH-HhccchHHHHHHHHHHHhccchHHHHH
Confidence 3457899999999999999999999888888888875 44688899999999999988 787776
No 165
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=96.39 E-value=0.014 Score=42.05 Aligned_cols=56 Identities=13% Similarity=0.074 Sum_probs=47.9
Q ss_pred HHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHH
Q psy12271 5 FAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRY 60 (95)
Q Consensus 5 ~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~ 60 (95)
..+...++.|+|+.+..|....++++.-| +.||+++|++..+..+|+.++..+...
T Consensus 384 ~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~ 440 (500)
T PRK09584 384 WLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANL 440 (500)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556688999999999999999999999 599999999998888888887777653
No 166
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=96.34 E-value=0.0068 Score=43.36 Aligned_cols=59 Identities=19% Similarity=0.148 Sum_probs=51.9
Q ss_pred HHHHHHHhhccccchhHHHHHhhhhcc-chHHHHHHHHHhhHHHHHHHHHHHHHHHhhcC
Q psy12271 8 SYGVFVGIGAGLSFPPGIFIVTSYFLK-YRGLANGIAISGSALGSIFLPPFLRYLLESYG 66 (95)
Q Consensus 8 ~~~~l~G~g~g~~~~~~~~~~~~~f~~-~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~g 66 (95)
...++.+++.+..+.+...++++..|+ ++|+..++.++..++|..+++.+++.+.+.+|
T Consensus 356 ~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g 415 (468)
T TIGR00788 356 GDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIG 415 (468)
T ss_pred ehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 345677778788888889999999985 89999999999999999999999999999888
No 167
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=96.30 E-value=0.022 Score=38.64 Aligned_cols=57 Identities=21% Similarity=0.268 Sum_probs=46.7
Q ss_pred HHHHHhhccccchhHHHHHhhhhc--cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcC
Q psy12271 10 GVFVGIGAGLSFPPGIFIVTSYFL--KYRGLANGIAISGSALGSIFLPPFLRYLLESYG 66 (95)
Q Consensus 10 ~~l~G~g~g~~~~~~~~~~~~~f~--~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~g 66 (95)
.++.|++.+..++.....+.+..+ ++++.+.++......++..++|++.+++.+++|
T Consensus 292 ~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g 350 (355)
T TIGR00896 292 ALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISG 350 (355)
T ss_pred HHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 467788888888877777665553 477999999998888999999999999998876
No 168
>KOG3626|consensus
Probab=96.30 E-value=0.011 Score=44.84 Aligned_cols=63 Identities=27% Similarity=0.245 Sum_probs=55.1
Q ss_pred hhHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhc
Q psy12271 3 SHFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESY 65 (95)
Q Consensus 3 ~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~ 65 (95)
|.+++..-++.|+|....++..++++++... ++-.+.+|+......+|++++-.+++.+..-|
T Consensus 237 ~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lY 300 (735)
T KOG3626|consen 237 FLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLY 300 (735)
T ss_pred HHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHee
Confidence 4456667789999999999999999999997 58899999999999999999999999887644
No 169
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=96.27 E-value=0.025 Score=40.51 Aligned_cols=43 Identities=23% Similarity=0.331 Sum_probs=37.2
Q ss_pred chhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHh
Q psy12271 21 FPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLE 63 (95)
Q Consensus 21 ~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~ 63 (95)
.+....+.++.|| +.|+++.|+.+....++.++++.+.+.+.+
T Consensus 410 ~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~ 453 (502)
T TIGR00887 410 NATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQ 453 (502)
T ss_pred CchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhc
Confidence 3445566789998 689999999999999999999999999887
No 170
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=96.26 E-value=0.029 Score=34.85 Aligned_cols=59 Identities=25% Similarity=0.261 Sum_probs=49.2
Q ss_pred hhHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy12271 3 SHFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYL 61 (95)
Q Consensus 3 ~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l 61 (95)
+..++..+++.|++.+..+.+...+++++.+ ++|++-.++.......+.+++..+.-.+
T Consensus 89 ~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~ 148 (156)
T PF05978_consen 89 SYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFI 148 (156)
T ss_pred HHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667789999999999999999999987 5999999999999888888877766554
No 171
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=96.25 E-value=0.014 Score=40.35 Aligned_cols=67 Identities=19% Similarity=0.296 Sum_probs=57.1
Q ss_pred HHHHHHHHHHhhccccchhHHHHHhhhhcc----chHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271 5 FAFSYGVFVGIGAGLSFPPGIFIVTSYFLK----YRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE 72 (95)
Q Consensus 5 ~~~~~~~l~G~g~g~~~~~~~~~~~~~f~~----~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~ 72 (95)
+|+.. ++.++|.|...+....++.+-|++ +|.....++..+..+|..++..+.+++-+++||...|.
T Consensus 36 ~~~gL-~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~ 106 (372)
T PF00854_consen 36 FYIGL-ALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFG 106 (372)
T ss_dssp HHHHH-HHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHH
T ss_pred HHHHH-HHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhh
Confidence 34444 567999999999999999999962 56778888999999999999999999999999999987
No 172
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=96.23 E-value=0.017 Score=40.06 Aligned_cols=60 Identities=12% Similarity=-0.042 Sum_probs=46.8
Q ss_pred HHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271 11 VFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE 72 (95)
Q Consensus 11 ~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~ 72 (95)
.+.|++....++....+.++.+| +.||+++|+.+....+|.+++|++.+.+.. |-+..|.
T Consensus 288 ~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~ 348 (368)
T TIGR00903 288 GIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS--SAEAYFT 348 (368)
T ss_pred HHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHH
Confidence 33445555556667778899998 599999999999999999999999988873 6565554
No 173
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=96.21 E-value=0.022 Score=40.80 Aligned_cols=58 Identities=14% Similarity=0.126 Sum_probs=49.0
Q ss_pred HHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhh
Q psy12271 7 FSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLES 64 (95)
Q Consensus 7 ~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~ 64 (95)
....++.|+|.|...++....+.+..| ++++.+.++.+....+|..+++.+.+.+.++
T Consensus 355 ~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~~ 413 (495)
T PRK14995 355 WGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLSR 413 (495)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345577899999888878787778887 5999999999999999999999999998653
No 174
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=96.12 E-value=0.033 Score=39.58 Aligned_cols=59 Identities=15% Similarity=0.104 Sum_probs=52.2
Q ss_pred HHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChH
Q psy12271 10 GVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYR 68 (95)
Q Consensus 10 ~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~ 68 (95)
.++.|+|.+..-.+-..++++.-| ++|+++.++...-.-+|.++...+.+.+++.|.-.
T Consensus 96 F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~ 155 (403)
T PF03209_consen 96 FLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPE 155 (403)
T ss_pred HHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHH
Confidence 367788888888888899999997 69999999999999999999999999999888644
No 175
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=96.06 E-value=0.0098 Score=42.54 Aligned_cols=68 Identities=12% Similarity=-0.082 Sum_probs=51.5
Q ss_pred HHHHHHHHHHhhccccchhHHHHHhhhhccchHH---HHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271 5 FAFSYGVFVGIGAGLSFPPGIFIVTSYFLKYRGL---ANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE 72 (95)
Q Consensus 5 ~~~~~~~l~G~g~g~~~~~~~~~~~~~f~~~rg~---a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~ 72 (95)
.+....++.+++.+...++.-.++.+..+++++. +.++......+|..+++.+.+.+.+.++||..|+
T Consensus 122 ~~~~~~~l~~~~~a~~dv~~da~~~e~~~~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~ 192 (468)
T TIGR00788 122 VAAAFIFLAALAKALYDVLVDSLYSERIRESPSAGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFL 192 (468)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhhhhhcCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHH
Confidence 3444567788888888888889999998853333 3334444456899999999999999999999886
No 176
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=96.04 E-value=0.04 Score=42.90 Aligned_cols=57 Identities=14% Similarity=0.071 Sum_probs=44.7
Q ss_pred HHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy12271 6 AFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLL 62 (95)
Q Consensus 6 ~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~ 62 (95)
.+...++.|++.++..++..+++.+.+| ++||+++|+.+....+|.++++.+...+.
T Consensus 325 ~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~ 382 (1146)
T PRK08633 325 VLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFS 382 (1146)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445577788888888888888888888 58999999999988888877766665544
No 177
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=95.96 E-value=0.0016 Score=47.59 Aligned_cols=60 Identities=23% Similarity=0.197 Sum_probs=2.9
Q ss_pred hHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHh
Q psy12271 4 HFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLE 63 (95)
Q Consensus 4 ~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~ 63 (95)
.+++...++.|+|....++...+++++..+ ++-+..+|+..+...+|+.++-.+++.++.
T Consensus 142 ~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~ 202 (539)
T PF03137_consen 142 YVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLR 202 (539)
T ss_dssp ----------SSS------------------------------------------------
T ss_pred HHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhccHHHHHHHHHHHHh
Confidence 456667799999999999999999999997 588999999999999999998888877664
No 178
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=95.95 E-value=0.039 Score=39.35 Aligned_cols=70 Identities=16% Similarity=0.200 Sum_probs=58.1
Q ss_pred hhHHHHHHHHHHhhccccchhHHHHHhhhhcc-chHHHHHHH-HHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271 3 SHFAFSYGVFVGIGAGLSFPPGIFIVTSYFLK-YRGLANGIA-ISGSALGSIFLPPFLRYLLESYGYRRDTE 72 (95)
Q Consensus 3 ~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~~-~rg~a~gi~-~~~~~~g~~~~~~~~~~l~~~~gw~~~~~ 72 (95)
.........+.|+-.++...+...++++.||+ -.++...+. +...++|.++.+++.|.+.+++|.+..|+
T Consensus 312 ~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tyl 383 (412)
T PF01306_consen 312 PWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYL 383 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHH
Confidence 34455667888988888999999999999985 445666664 78899999999999999999999998887
No 179
>PRK10091 MFS transport protein AraJ; Provisional
Probab=95.94 E-value=0.061 Score=37.03 Aligned_cols=60 Identities=15% Similarity=-0.037 Sum_probs=37.5
Q ss_pred HHHHhhccccchhHHH-HHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhh-cChHHhhH
Q psy12271 11 VFVGIGAGLSFPPGIF-IVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLES-YGYRRDTE 72 (95)
Q Consensus 11 ~l~G~g~g~~~~~~~~-~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~-~gw~~~~~ 72 (95)
++.+++.....++... ...+.++ +.++.+ .......+|..++|++.+++.+. .+|++.+.
T Consensus 297 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~ 359 (382)
T PRK10091 297 FICCAGLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVAL 359 (382)
T ss_pred HHHHHHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcccCcchHHH
Confidence 3444444433333333 3334343 344443 34667789999999999999985 68988877
No 180
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=95.94 E-value=0.047 Score=38.30 Aligned_cols=49 Identities=14% Similarity=-0.018 Sum_probs=31.5
Q ss_pred hhHHHHHhhhhc-cchHHHHHHHHHhhHH-HHHHHHHHHHHHHhhcC-hHHhh
Q psy12271 22 PPGIFIVTSYFL-KYRGLANGIAISGSAL-GSIFLPPFLRYLLESYG-YRRDT 71 (95)
Q Consensus 22 ~~~~~~~~~~f~-~~rg~a~gi~~~~~~~-g~~~~~~~~~~l~~~~g-w~~~~ 71 (95)
+....+++++|| +.|++++|+.+....+ .....|.+.+ +++..| |...+
T Consensus 355 ~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~-~l~~~g~~~~~~ 406 (432)
T PRK10406 355 SISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVAL-SLKSIGMETAFF 406 (432)
T ss_pred HHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHH-HHHHhCCCcHHH
Confidence 445567889998 5899999998765443 3444555556 445556 44333
No 181
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=95.91 E-value=0.036 Score=39.98 Aligned_cols=56 Identities=11% Similarity=0.107 Sum_probs=48.3
Q ss_pred HHHHHHHHHhhccccchhHHHHHhhhhcc-chHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy12271 6 AFSYGVFVGIGAGLSFPPGIFIVTSYFLK-YRGLANGIAISGSALGSIFLPPFLRYL 61 (95)
Q Consensus 6 ~~~~~~l~G~g~g~~~~~~~~~~~~~f~~-~rg~a~gi~~~~~~~g~~~~~~~~~~l 61 (95)
.+...++.|+|+++..++....+.+..|+ .+|.++|++.....+|..++..+.+..
T Consensus 382 ~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~ 438 (489)
T PRK10207 382 IVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFT 438 (489)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34456789999999999999999999984 899999999999999999888877544
No 182
>KOG2504|consensus
Probab=95.87 E-value=0.0063 Score=44.28 Aligned_cols=70 Identities=16% Similarity=0.177 Sum_probs=58.4
Q ss_pred hhHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcC-hHHhhH
Q psy12271 3 SHFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYG-YRRDTE 72 (95)
Q Consensus 3 ~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~g-w~~~~~ 72 (95)
+..+.++.++.|+..|........++.+..+ ++-..+.|+.....+++..++||+.+++.+..| |...|+
T Consensus 388 ~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~ 459 (509)
T KOG2504|consen 388 YVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFY 459 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehh
Confidence 3456778888898888777777678889997 688999999999999999999999998888776 665554
No 183
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=95.80 E-value=0.085 Score=37.45 Aligned_cols=62 Identities=13% Similarity=0.113 Sum_probs=51.6
Q ss_pred HHHHhhccccchhHHHHHhhhhccchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271 11 VFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE 72 (95)
Q Consensus 11 ~l~G~g~g~~~~~~~~~~~~~f~~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~ 72 (95)
++.|+..+...+.-..-+++..|+.++.+.++.....++|..++..+++.+.+++|++...+
T Consensus 308 ~~wg~a~~~~~~~~~~~~a~~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~ 369 (394)
T COG2814 308 FLWGFAFSPALQGLQTRLARLAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGW 369 (394)
T ss_pred HHHHHHhhhhhhHHHHHhcccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHH
Confidence 44666655556666666777667999999999999999999999999999999999998776
No 184
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=95.66 E-value=0.061 Score=38.01 Aligned_cols=63 Identities=17% Similarity=0.285 Sum_probs=55.5
Q ss_pred HHHHHhhccccchhHHHHHhhhhc--cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhc-ChHHhhH
Q psy12271 10 GVFVGIGAGLSFPPGIFIVTSYFL--KYRGLANGIAISGSALGSIFLPPFLRYLLESY-GYRRDTE 72 (95)
Q Consensus 10 ~~l~G~g~g~~~~~~~~~~~~~f~--~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~-gw~~~~~ 72 (95)
.++.|+|.|.+++.+...+....+ ++-+.-.|..+...++=..++|.+.+++.+.. +|+..+.
T Consensus 303 ~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~ 368 (395)
T COG2807 303 ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLV 368 (395)
T ss_pred HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHH
Confidence 489999999999999999999986 47788888899999999999999999999876 4887766
No 185
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=95.42 E-value=0.061 Score=38.88 Aligned_cols=62 Identities=19% Similarity=0.207 Sum_probs=48.0
Q ss_pred HHHHhhccccchhHHHHHhhhhcc----------------------chHHHHHHHHHhhHHHHHHHHHHHHHHHhhcC-h
Q psy12271 11 VFVGIGAGLSFPPGIFIVTSYFLK----------------------YRGLANGIAISGSALGSIFLPPFLRYLLESYG-Y 67 (95)
Q Consensus 11 ~l~G~g~g~~~~~~~~~~~~~f~~----------------------~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~g-w 67 (95)
+...++.|....+...++.++||+ +-|.+.|+......+|.++.|++.+...+..| +
T Consensus 353 ~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~ 432 (462)
T PRK15034 353 MGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSP 432 (462)
T ss_pred HHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCc
Confidence 344456666677788888888874 66899999999999999999999998887654 5
Q ss_pred HHhhH
Q psy12271 68 RRDTE 72 (95)
Q Consensus 68 ~~~~~ 72 (95)
...|+
T Consensus 433 ~~~~~ 437 (462)
T PRK15034 433 VGAMK 437 (462)
T ss_pred HHHHH
Confidence 54444
No 186
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=95.40 E-value=0.07 Score=38.09 Aligned_cols=61 Identities=20% Similarity=0.072 Sum_probs=52.5
Q ss_pred hhHHHHHHHHHHhhccccchhHHHHHhhhhcc-chHHHHHHHHHhhHHHHHHHHHHHHHHHh
Q psy12271 3 SHFAFSYGVFVGIGAGLSFPPGIFIVTSYFLK-YRGLANGIAISGSALGSIFLPPFLRYLLE 63 (95)
Q Consensus 3 ~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~~-~rg~a~gi~~~~~~~g~~~~~~~~~~l~~ 63 (95)
+.+|+..-++.|.|.+..-.++..+++...++ +...-+.+...-.++|..++|++++.++.
T Consensus 104 y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lil 165 (422)
T COG0738 104 YGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLIL 165 (422)
T ss_pred HHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 45666666888889888888888999999974 77888999999999999999999999887
No 187
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=95.12 E-value=0.15 Score=35.42 Aligned_cols=64 Identities=11% Similarity=0.063 Sum_probs=48.5
Q ss_pred HHHHHHHhhccccchhHHHHHhhhhcc-c-hHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271 8 SYGVFVGIGAGLSFPPGIFIVTSYFLK-Y-RGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE 72 (95)
Q Consensus 8 ~~~~l~G~g~g~~~~~~~~~~~~~f~~-~-rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~ 72 (95)
...++.|++.+...++..+.+.+.-|+ + +|++.++.+....++..++..+.+.+ ..+|-|..+.
T Consensus 298 ~~~~~~G~~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 363 (393)
T PRK11195 298 PLLILIGALGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL-VKLGVPVVAV 363 (393)
T ss_pred HHHHHHHHhhhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH-HHcCCCHHHH
Confidence 344577888777767676777666554 3 69999999999999999999888855 5677766555
No 188
>PRK09848 glucuronide transporter; Provisional
Probab=95.12 E-value=0.13 Score=36.15 Aligned_cols=61 Identities=15% Similarity=0.152 Sum_probs=48.7
Q ss_pred HHHHHHHHhhccccchhHHHHHhhhhcc--------chHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCh
Q psy12271 7 FSYGVFVGIGAGLSFPPGIFIVTSYFLK--------YRGLANGIAISGSALGSIFLPPFLRYLLESYGY 67 (95)
Q Consensus 7 ~~~~~l~G~g~g~~~~~~~~~~~~~f~~--------~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw 67 (95)
+...++.|+|.+...+...++.++-.|. ++|...|+.+....+|..+++.+.+.+.+..|+
T Consensus 323 ~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~ 391 (448)
T PRK09848 323 LVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGY 391 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3345677888888888877777776642 359999999999999999999999998877766
No 189
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=95.01 E-value=0.12 Score=37.56 Aligned_cols=48 Identities=15% Similarity=0.036 Sum_probs=38.8
Q ss_pred HhhccccchhHHHHHhhhhc-cch--HHHHHHHHHhhHHHHHHHHHHHHHH
Q psy12271 14 GIGAGLSFPPGIFIVTSYFL-KYR--GLANGIAISGSALGSIFLPPFLRYL 61 (95)
Q Consensus 14 G~g~g~~~~~~~~~~~~~f~-~~r--g~a~gi~~~~~~~g~~~~~~~~~~l 61 (95)
.++.....++.-+++++.+| ++| +.+.++......+|+++++.+.+.+
T Consensus 125 d~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~ 175 (477)
T TIGR01301 125 DVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYS 175 (477)
T ss_pred HHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667788889999998 333 6899999999999999999988765
No 190
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=94.95 E-value=0.062 Score=38.33 Aligned_cols=60 Identities=27% Similarity=0.290 Sum_probs=49.7
Q ss_pred HHhhccccchhHHHHHhhhhccchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcC-hHHhhH
Q psy12271 13 VGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLLESYG-YRRDTE 72 (95)
Q Consensus 13 ~G~g~g~~~~~~~~~~~~~f~~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~g-w~~~~~ 72 (95)
.++..|.....+..++.++||++-|.+.|++.....+|.+..|...+...+..| ++.+|+
T Consensus 324 l~~~~G~GnGsvfk~Ip~if~~~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~ 384 (417)
T COG2223 324 LFVFAGLGNGSVFKMIPVIFPKETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFM 384 (417)
T ss_pred HHHHhccCcchheeechHHHHhhhhHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHH
Confidence 334444445566678889999999999999999999999999999999998888 777776
No 191
>PRK09669 putative symporter YagG; Provisional
Probab=94.87 E-value=0.17 Score=35.67 Aligned_cols=63 Identities=14% Similarity=0.196 Sum_probs=50.0
Q ss_pred HHHHHHHHHhhccccchhHHHHHhhhhc-------c-chHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChH
Q psy12271 6 AFSYGVFVGIGAGLSFPPGIFIVTSYFL-------K-YRGLANGIAISGSALGSIFLPPFLRYLLESYGYR 68 (95)
Q Consensus 6 ~~~~~~l~G~g~g~~~~~~~~~~~~~f~-------~-~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~ 68 (95)
++...++.|++.+...+...+++++..+ + +.|...|+......+|..+++.+.+.+.+..|+.
T Consensus 322 ~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy~ 392 (444)
T PRK09669 322 IFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDYV 392 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 4445567888888888888888887764 1 3467788888888999999999999999888874
No 192
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=94.74 E-value=0.079 Score=37.23 Aligned_cols=62 Identities=11% Similarity=0.086 Sum_probs=47.5
Q ss_pred HHHHHhhccccchhHHHHHhhhhccchHHHHHHHHHhhHHHHHHHHHHHHHHHhhc------ChHHhhH
Q psy12271 10 GVFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLLESY------GYRRDTE 72 (95)
Q Consensus 10 ~~l~G~g~g~~~~~~~~~~~~~f~~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~------gw~~~~~ 72 (95)
-++.|+..+.++|...++..+-.+++...+.+...++. +|..+.|++.+++.+.. +.+..|.
T Consensus 328 l~~~glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~~~-~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~ 395 (410)
T TIGR00885 328 LTLCSAFMSLMFPTIYGIALKGLGQDTKYGAAGLVMAI-IGGGIVPPLQGFIIDMKEIAAAPAVNTSFI 395 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHH-hccchHHHHHHHHHHHhcccccCccchHHH
Confidence 35677888888999999999999876655555555544 99999999999999954 3565554
No 193
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=94.55 E-value=0.29 Score=34.27 Aligned_cols=55 Identities=16% Similarity=0.077 Sum_probs=37.6
Q ss_pred HHHHHHHhhccccchhHHHHHhhhhc--cchHHHHHHHHHhhHHHHHHHHHHHHHHHhh
Q psy12271 8 SYGVFVGIGAGLSFPPGIFIVTSYFL--KYRGLANGIAISGSALGSIFLPPFLRYLLES 64 (95)
Q Consensus 8 ~~~~l~G~g~g~~~~~~~~~~~~~f~--~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~ 64 (95)
...++.++|.+...+...... +++ ..+|++.++.......+..+++...+++..+
T Consensus 317 ~~~~l~~~G~~~~~p~~~~~a--l~~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~ 373 (413)
T PRK15403 317 LGTSLYAFGIGLIFPTLFRFT--LFSNNLPKGTVSASLNMVILMVMAVSVEIGRWLWFN 373 (413)
T ss_pred HHHHHHHHHHHHHhHHHHHHH--hccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344556777776666655432 343 3689999999888878888888887777553
No 194
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=94.26 E-value=0.024 Score=40.64 Aligned_cols=68 Identities=15% Similarity=0.067 Sum_probs=50.1
Q ss_pred HHHHHHHHHHhhccccchhHHHHHhhhhcc-chHHHHHHHHHhhHH-HHHHHHHHHHHHHhhcChHHhhH
Q psy12271 5 FAFSYGVFVGIGAGLSFPPGIFIVTSYFLK-YRGLANGIAISGSAL-GSIFLPPFLRYLLESYGYRRDTE 72 (95)
Q Consensus 5 ~~~~~~~l~G~g~g~~~~~~~~~~~~~f~~-~rg~a~gi~~~~~~~-g~~~~~~~~~~l~~~~gw~~~~~ 72 (95)
+....-++.|+-.-.--........+..|| --|++.|.......+ |...+..+.+++.+.+||.+.|.
T Consensus 348 l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi 417 (448)
T COG2271 348 LDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFI 417 (448)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCCCcchHH
Confidence 333344555643332223344456677786 779999999999999 99999999999999999999887
No 195
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=94.19 E-value=0.23 Score=36.20 Aligned_cols=56 Identities=13% Similarity=0.048 Sum_probs=45.7
Q ss_pred HHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHh-hHHHHHHHHHHHHHH
Q psy12271 6 AFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISG-SALGSIFLPPFLRYL 61 (95)
Q Consensus 6 ~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~-~~~g~~~~~~~~~~l 61 (95)
.+...++.++|+-+..|...+.+++.-| |-||+.+|++... ..+|+.++..+.+..
T Consensus 380 l~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~ 437 (493)
T PRK15462 380 MVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQT 437 (493)
T ss_pred HHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445578899999999999999999999 5999999999774 467777777666654
No 196
>KOG2563|consensus
Probab=93.60 E-value=0.1 Score=37.74 Aligned_cols=59 Identities=15% Similarity=0.131 Sum_probs=44.3
Q ss_pred HHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhh
Q psy12271 6 AFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLES 64 (95)
Q Consensus 6 ~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~ 64 (95)
..+...+.+..+-........+.+.||+ ++|+.|..+-.++..+|..++..+-..+.++
T Consensus 143 ~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~ 202 (480)
T KOG2563|consen 143 THTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPS 202 (480)
T ss_pred hHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCC
Confidence 3345566666666555555688999997 6999999999999888888877777766654
No 197
>PRK09669 putative symporter YagG; Provisional
Probab=93.58 E-value=0.61 Score=32.85 Aligned_cols=64 Identities=11% Similarity=0.016 Sum_probs=41.6
Q ss_pred HHHHHHhhccccchhHHHHHhhhhc--cchHHHHHHHHHhhHHHHHHHHHHHHHHHh-------hcChHHhhH
Q psy12271 9 YGVFVGIGAGLSFPPGIFIVTSYFL--KYRGLANGIAISGSALGSIFLPPFLRYLLE-------SYGYRRDTE 72 (95)
Q Consensus 9 ~~~l~G~g~g~~~~~~~~~~~~~f~--~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~-------~~gw~~~~~ 72 (95)
..++.+++..+..++-.++.+++.+ ++|++..++...+..+|..+++.+...+.. ..||+..+.
T Consensus 115 ~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~ 187 (444)
T PRK09669 115 TYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMM 187 (444)
T ss_pred HHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHH
Confidence 3345565666666777788888874 689988888877777776666554433332 346775543
No 198
>PF13347 MFS_2: MFS/sugar transport protein
Probab=93.56 E-value=0.25 Score=34.61 Aligned_cols=68 Identities=18% Similarity=0.204 Sum_probs=55.1
Q ss_pred chhHHHHHHHHHHhhccccchhHHHHHhhhhc--------cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHH
Q psy12271 2 SSHFAFSYGVFVGIGAGLSFPPGIFIVTSYFL--------KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRR 69 (95)
Q Consensus 2 ~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~--------~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~ 69 (95)
+..+++...++.|++.+..+....+++++..+ ++.|+..|+.....-++..+++.+.+.+++..|+..
T Consensus 314 ~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~Gy~~ 389 (428)
T PF13347_consen 314 SPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVGYDA 389 (428)
T ss_pred hHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhCcCC
Confidence 34556667788999999988888888888775 234899999999999999999999999888777654
No 199
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=93.48 E-value=0.17 Score=36.31 Aligned_cols=62 Identities=16% Similarity=0.139 Sum_probs=55.5
Q ss_pred HHHHHHHHHHhhccccchhHHHHHhhhhcc-chHHHHHHHHHhhHHHHHHHHHHHHHHHhhcC
Q psy12271 5 FAFSYGVFVGIGAGLSFPPGIFIVTSYFLK-YRGLANGIAISGSALGSIFLPPFLRYLLESYG 66 (95)
Q Consensus 5 ~~~~~~~l~G~g~g~~~~~~~~~~~~~f~~-~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~g 66 (95)
-|+..+++.|..+|.....+=++.++..|+ |-++..|+++...-.+.+++|.+.+.+.+..|
T Consensus 343 ~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg 405 (438)
T COG2270 343 DFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITG 405 (438)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhc
Confidence 367788999999999999999999999996 88999999999999999999999999887654
No 200
>KOG0252|consensus
Probab=93.46 E-value=0.026 Score=41.03 Aligned_cols=56 Identities=18% Similarity=0.193 Sum_probs=45.1
Q ss_pred HHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy12271 6 AFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYL 61 (95)
Q Consensus 6 ~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l 61 (95)
...+|++.|+|.|.-||.+.++.+++-. ++||.-.+++.+-.++|...+.++.-.+
T Consensus 147 L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv 203 (538)
T KOG0252|consen 147 LCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIV 203 (538)
T ss_pred HHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHH
Confidence 4568899999999999999999999997 5999988888777777666655555443
No 201
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=93.37 E-value=0.38 Score=34.34 Aligned_cols=56 Identities=16% Similarity=0.194 Sum_probs=46.4
Q ss_pred HHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy12271 7 FSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLL 62 (95)
Q Consensus 7 ~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~ 62 (95)
+...+..|+-.|..|+-+...+.+-.+ ++|..++|....+-++|..++..++-.+-
T Consensus 339 f~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le 395 (402)
T PF02487_consen 339 FVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLE 395 (402)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 345577888888889888888888786 69999999999999999998888776553
No 202
>KOG2325|consensus
Probab=93.25 E-value=0.29 Score=35.78 Aligned_cols=60 Identities=18% Similarity=0.192 Sum_probs=41.5
Q ss_pred hhHHHHHHHHHHhhccccchhHHHHHhhhhccchHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy12271 3 SHFAFSYGVFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLL 62 (95)
Q Consensus 3 ~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~~~rg~a~gi~~~~~~~g~~~~~~~~~~l~ 62 (95)
..+++..|++.|+|.|.....=.-+.+.-.+++|-++++....+..+|..++|.+.....
T Consensus 130 ~y~mL~~R~l~Gvg~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~ 189 (488)
T KOG2325|consen 130 KYLMLVARILTGVGVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFT 189 (488)
T ss_pred HHHHHHHHHHcCcCcccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHh
Confidence 346777889999997755444333344445678888888888877777777776665544
No 203
>TIGR00901 2A0125 AmpG-related permease.
Probab=92.94 E-value=0.2 Score=33.98 Aligned_cols=40 Identities=15% Similarity=0.044 Sum_probs=33.4
Q ss_pred HHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhH
Q psy12271 9 YGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSA 48 (95)
Q Consensus 9 ~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~ 48 (95)
..++.+++.+...++..+++++.+| ++||+..|+.++..+
T Consensus 315 ~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 315 TITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 3456688888889999999999998 699999999877654
No 204
>KOG3762|consensus
Probab=92.81 E-value=0.11 Score=38.61 Aligned_cols=69 Identities=17% Similarity=0.209 Sum_probs=56.3
Q ss_pred hHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHh-hHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271 4 HFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISG-SALGSIFLPPFLRYLLESYGYRRDTE 72 (95)
Q Consensus 4 ~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~-~~~g~~~~~~~~~~l~~~~gw~~~~~ 72 (95)
.+.+-.-+++|+..+..+.+..++++..-| +-|..+.++.... .++|-.+++.+++.+.+.+|=|..|+
T Consensus 460 W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~ 530 (618)
T KOG3762|consen 460 WMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFR 530 (618)
T ss_pred hheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHH
Confidence 344445689999999999999999999997 5888899888554 46778888888888888898887776
No 205
>PRK10429 melibiose:sodium symporter; Provisional
Probab=92.49 E-value=0.75 Score=32.83 Aligned_cols=64 Identities=20% Similarity=0.286 Sum_probs=48.1
Q ss_pred HHHHHHHHHHhhccccchhHHHHHhhhhc-------c-chHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChH
Q psy12271 5 FAFSYGVFVGIGAGLSFPPGIFIVTSYFL-------K-YRGLANGIAISGSALGSIFLPPFLRYLLESYGYR 68 (95)
Q Consensus 5 ~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-------~-~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~ 68 (95)
+++...++.|++.+...+...+++++..+ + +.|...|+.....-+|..+++.+.+.+.+..|+.
T Consensus 326 ~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~Gy~ 397 (473)
T PRK10429 326 LIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIGYV 397 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 34445567788888777777777777733 2 3467889999999999999999999988877763
No 206
>KOG0569|consensus
Probab=92.37 E-value=2.1 Score=31.39 Aligned_cols=70 Identities=19% Similarity=0.060 Sum_probs=52.6
Q ss_pred HHHhhcccc-chhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH------------HhccC
Q psy12271 12 FVGIGAGLS-FPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE------------KVREK 77 (95)
Q Consensus 12 l~G~g~g~~-~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~------------~~~~~ 77 (95)
+..++.+.. -|...-+.++.|| ..|..++++......+++++.......+.+.+|= ..|. ..+.-
T Consensus 376 ~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~l 454 (485)
T KOG0569|consen 376 LFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYL 454 (485)
T ss_pred HHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhC
Confidence 334444443 4777889999998 5999999999999999999988888888887774 2222 45678
Q ss_pred ccchh
Q psy12271 78 GEEEE 82 (95)
Q Consensus 78 p~~~~ 82 (95)
||++.
T Consensus 455 PETkg 459 (485)
T KOG0569|consen 455 PETKG 459 (485)
T ss_pred cccCC
Confidence 88863
No 207
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=92.12 E-value=1 Score=34.05 Aligned_cols=62 Identities=15% Similarity=0.047 Sum_probs=50.8
Q ss_pred HHHHhhccccchhHHHHHhhhhc-c---chHHHHHHHHHhhHHHHHHHHHHHHHHHhhc-------ChHHhhH
Q psy12271 11 VFVGIGAGLSFPPGIFIVTSYFL-K---YRGLANGIAISGSALGSIFLPPFLRYLLESY-------GYRRDTE 72 (95)
Q Consensus 11 ~l~G~g~g~~~~~~~~~~~~~f~-~---~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~-------gw~~~~~ 72 (95)
.+..+|.|.+.++......+-|+ + +|-....++..+.++|..+++++.+++.+.+ +|..+|.
T Consensus 93 aLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~ 165 (654)
T TIGR00926 93 ALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFG 165 (654)
T ss_pred HHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHH
Confidence 44567888899999999998886 2 4778889999999999999999999987554 5888775
No 208
>PF13347 MFS_2: MFS/sugar transport protein
Probab=91.41 E-value=0.68 Score=32.47 Aligned_cols=66 Identities=17% Similarity=0.177 Sum_probs=48.8
Q ss_pred HHHHHHHHhhccccchhHHHHHhhhhc--cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhc-------ChHHhhH
Q psy12271 7 FSYGVFVGIGAGLSFPPGIFIVTSYFL--KYRGLANGIAISGSALGSIFLPPFLRYLLESY-------GYRRDTE 72 (95)
Q Consensus 7 ~~~~~l~G~g~g~~~~~~~~~~~~~f~--~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~-------gw~~~~~ 72 (95)
+...++..++......+..++..+..+ ++|.+..++-.....+|..+...+...+...+ +|++...
T Consensus 107 ~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~ 181 (428)
T PF13347_consen 107 FVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMAL 181 (428)
T ss_pred HHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHH
Confidence 334455577888888888889999986 59999999998888888876666666555433 4776555
No 209
>KOG2532|consensus
Probab=91.06 E-value=0.29 Score=35.42 Aligned_cols=41 Identities=17% Similarity=0.143 Sum_probs=36.9
Q ss_pred hccchHHHHHHHHHhhHHHHHHHHHHHHHHHhh---cChHHhhH
Q psy12271 32 FLKYRGLANGIAISGSALGSIFLPPFLRYLLES---YGYRRDTE 72 (95)
Q Consensus 32 f~~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~---~gw~~~~~ 72 (95)
-|++-+.++|+.+....+..++.|.+.+.+.++ -.||.+|.
T Consensus 387 apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~ 430 (466)
T KOG2532|consen 387 APQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFL 430 (466)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHH
Confidence 678999999999999999999999999999942 37999998
No 210
>KOG4686|consensus
Probab=90.89 E-value=0.034 Score=38.66 Aligned_cols=61 Identities=18% Similarity=0.166 Sum_probs=48.7
Q ss_pred hhHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHh
Q psy12271 3 SHFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLE 63 (95)
Q Consensus 3 ~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~ 63 (95)
+..++..+|+.|+|.-...++...++..||+ |+.+.++|+..+..-+|+.+--.+.+++.+
T Consensus 136 Fw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~ 197 (459)
T KOG4686|consen 136 FWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYD 197 (459)
T ss_pred HHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHH
Confidence 4456778899999866778888899999998 899999999998888887766555555544
No 211
>KOG0252|consensus
Probab=90.68 E-value=0.25 Score=36.17 Aligned_cols=49 Identities=20% Similarity=0.266 Sum_probs=43.3
Q ss_pred HHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHh-----hcChHHhhHH
Q psy12271 25 IFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLE-----SYGYRRDTEK 73 (95)
Q Consensus 25 ~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~-----~~gw~~~~~~ 73 (95)
..+-++.|| +-|++.-|+.....-+|.+++.....++.+ ..|-|+++++
T Consensus 428 fivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i 482 (538)
T KOG0252|consen 428 FIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFII 482 (538)
T ss_pred EEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHH
Confidence 345678899 699999999999999999999999999998 7788888873
No 212
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=90.50 E-value=1.5 Score=31.99 Aligned_cols=57 Identities=14% Similarity=0.139 Sum_probs=45.0
Q ss_pred HHHHHHHHhhccccchhHHHHHhhhhc--cchHHHHHHHHHhhHHHHHHHHHHHHHHHh
Q psy12271 7 FSYGVFVGIGAGLSFPPGIFIVTSYFL--KYRGLANGIAISGSALGSIFLPPFLRYLLE 63 (95)
Q Consensus 7 ~~~~~l~G~g~g~~~~~~~~~~~~~f~--~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~ 63 (95)
....++.+++..+...+-.++..+.-+ ++|....++-.....+|..+...+...+..
T Consensus 116 ~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~ 174 (467)
T COG2211 116 LVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVK 174 (467)
T ss_pred HHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334477889999888888888888875 699999999999999887777666655553
No 213
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=90.39 E-value=0.23 Score=35.56 Aligned_cols=61 Identities=13% Similarity=0.336 Sum_probs=47.9
Q ss_pred HHHHhhccccchhHHHHHhhhhccchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271 11 VFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE 72 (95)
Q Consensus 11 ~l~G~g~g~~~~~~~~~~~~~f~~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~ 72 (95)
++.|+..+.++|...++..+-.|++-....++.. -..+|..+.|++.+++.+++|-+..+.
T Consensus 332 ~~ig~F~simfPTIfslal~~l~~~ts~~s~~l~-maivGGAiiP~l~G~i~d~~g~~~~~~ 392 (422)
T COG0738 332 FLIGLFNSIMFPTIFSLALKNLGEHTSVGSGLLV-MAIVGGAIIPPLQGVIADMFGIQLTFL 392 (422)
T ss_pred HHHHHHhHHHHHHHHHHHHhccCccccccceeee-eheecchHHHHHHHHHHHhhhhHHHHH
Confidence 5678889999999999999999855544444444 445788888999999999999876543
No 214
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=90.26 E-value=1.9 Score=30.92 Aligned_cols=59 Identities=15% Similarity=0.046 Sum_probs=49.6
Q ss_pred HHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHh
Q psy12271 5 FAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLE 63 (95)
Q Consensus 5 ~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~ 63 (95)
++...-++.|++.|.....+++.+-+.-. .+.|+.+|.+.....++..++..+++.+.+
T Consensus 303 ~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D 362 (403)
T PF03209_consen 303 LFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRD 362 (403)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455578999999999999999999986 599999999999998888888888877654
No 215
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=89.54 E-value=1.4 Score=32.13 Aligned_cols=59 Identities=12% Similarity=0.080 Sum_probs=48.8
Q ss_pred HHHHHHHhhccccchhHHHHHhhhhc---cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcC
Q psy12271 8 SYGVFVGIGAGLSFPPGIFIVTSYFL---KYRGLANGIAISGSALGSIFLPPFLRYLLESYG 66 (95)
Q Consensus 8 ~~~~l~G~g~g~~~~~~~~~~~~~f~---~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~g 66 (95)
+...+.|+..+..+....++++++.+ ++.|..+|+.+....+..++.+...+.+.+.+|
T Consensus 385 ~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g 446 (477)
T TIGR01301 385 IVFAILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFG 446 (477)
T ss_pred HHHHHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 33456788888888999999999998 356999999999999999999988888666555
No 216
>PRK11462 putative transporter; Provisional
Probab=89.05 E-value=3.6 Score=29.42 Aligned_cols=56 Identities=7% Similarity=-0.110 Sum_probs=40.2
Q ss_pred HHHHHHhhccccchhHHHHHhhhhc--cchHHHHHHHHHhhHHHHHHHHHHHHHHHhh
Q psy12271 9 YGVFVGIGAGLSFPPGIFIVTSYFL--KYRGLANGIAISGSALGSIFLPPFLRYLLES 64 (95)
Q Consensus 9 ~~~l~G~g~g~~~~~~~~~~~~~f~--~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~ 64 (95)
..++..++..+...+-.++..+.-+ ++|++.+++...+..+|..+++.+...+.+.
T Consensus 115 ~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~ 172 (460)
T PRK11462 115 TYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNL 172 (460)
T ss_pred HHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566767766777777777765 6999999999998888877776665544443
No 217
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=87.85 E-value=2.2 Score=30.50 Aligned_cols=57 Identities=21% Similarity=0.317 Sum_probs=48.9
Q ss_pred HHHHhhccccchhHHHHHhhhhcc-chHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCh
Q psy12271 11 VFVGIGAGLSFPPGIFIVTSYFLK-YRGLANGIAISGSALGSIFLPPFLRYLLESYGY 67 (95)
Q Consensus 11 ~l~G~g~g~~~~~~~~~~~~~f~~-~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw 67 (95)
++..+.....+.+...++++..|+ .-|+..++..+..++|..++..+...+.+.++.
T Consensus 326 ~l~~~~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~v 383 (433)
T PF03092_consen 326 ILEEVIGMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGV 383 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 445555566688889999999997 889999999999999999999999999988874
No 218
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=87.48 E-value=1.9 Score=30.31 Aligned_cols=55 Identities=13% Similarity=-0.073 Sum_probs=29.0
Q ss_pred HHHHHHHHhhccccchhHHHHH-----------hhhhccchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHH
Q psy12271 7 FSYGVFVGIGAGLSFPPGIFIV-----------TSYFLKYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRR 69 (95)
Q Consensus 7 ~~~~~l~G~g~g~~~~~~~~~~-----------~~~f~~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~ 69 (95)
+...++.|++.+...+...++. .+.+++ .+..| .+|..+++.+.+.+.....|+.
T Consensus 96 ~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~--~r~~G------~lG~~ig~~l~g~l~~~~~~~~ 161 (418)
T TIGR00889 96 FPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPP--IRVMG------TIGFIAAMWAVSLLDIELSNIQ 161 (418)
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCC--eeeeh------hHHHHHHHHHHHHhcccchhHH
Confidence 3444667776665555444432 333443 33343 3567777777776643334553
No 219
>PTZ00207 hypothetical protein; Provisional
Probab=87.30 E-value=2.7 Score=31.57 Aligned_cols=58 Identities=17% Similarity=0.272 Sum_probs=47.6
Q ss_pred HHHHHHHHHHhhccccchhHHHHHhhhhccchHHHHHHHHHhhHHHHHHH-HHHHHHHHh
Q psy12271 5 FAFSYGVFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFL-PPFLRYLLE 63 (95)
Q Consensus 5 ~~~~~~~l~G~g~g~~~~~~~~~~~~~f~~~rg~a~gi~~~~~~~g~~~~-~~~~~~l~~ 63 (95)
+|+.+ ++.|++.|..+.....++++.|-|+-|+---+...+..+|+.+. ..+.+.+-+
T Consensus 455 L~~~~-~lvg~~~G~~~~~~~~i~selFgk~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd 513 (591)
T PTZ00207 455 LPLPY-FIAAFANGFMAATIALVTRTIFAKDPAKHYNFCFLGSVLSAIFLNRLLYGEWYT 513 (591)
T ss_pred hHHHH-HHHHHHhhHhHHHHHHHHHHHhccchHHHhhHHhHHHHHHHHHHHHHHHHHHHH
Confidence 44444 78999999999999999999999999999998899999998887 445555543
No 220
>KOG2615|consensus
Probab=87.24 E-value=1.1 Score=32.24 Aligned_cols=51 Identities=22% Similarity=0.128 Sum_probs=40.9
Q ss_pred HHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy12271 12 FVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLL 62 (95)
Q Consensus 12 l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~ 62 (95)
+--+..+..-++-..++..+-| .+||.++|+..+..+++=.++|.+.+.+.
T Consensus 361 l~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~ 412 (451)
T KOG2615|consen 361 LKSFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIF 412 (451)
T ss_pred HHHHHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeE
Confidence 3444444555666778888888 59999999999999999999999998764
No 221
>KOG3098|consensus
Probab=85.69 E-value=1.3 Score=32.19 Aligned_cols=57 Identities=16% Similarity=-0.005 Sum_probs=47.3
Q ss_pred hHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHH
Q psy12271 4 HFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRY 60 (95)
Q Consensus 4 ~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~ 60 (95)
.++...+.+.|+|.+..+.....+++++.+ +++.+..++.......+.+++..+.-.
T Consensus 103 y~~yfssallG~Gaallw~GqG~ylt~~st~~tie~Nisi~Wai~~~~li~Ggi~l~~ 160 (461)
T KOG3098|consen 103 YYLYFSSALLGFGAALLWTGQGGYLTSNSTRETIERNISIFWAIGQSSLIIGGIILFI 160 (461)
T ss_pred HHHHHHHHHhhhhHHheecccceehhhcCChhhHHHHHHHHHHHHHHHHHhhhHhhee
Confidence 345556688999999999999999999997 588999999998888888888666544
No 222
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=85.20 E-value=1 Score=30.34 Aligned_cols=39 Identities=18% Similarity=0.169 Sum_probs=28.2
Q ss_pred HHHhhccccchhHHHHHhhhhccchHHHHHHHHHhhHHH
Q psy12271 12 FVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALG 50 (95)
Q Consensus 12 l~G~g~g~~~~~~~~~~~~~f~~~rg~a~gi~~~~~~~g 50 (95)
+.+++.|........++.+.+|+++|.++|+......+|
T Consensus 327 ~~~~~~g~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g 365 (366)
T TIGR00886 327 ALFFFSGAGNGSTFALVPHIFRRATGAVSGLVGAIGNLG 365 (366)
T ss_pred HHHHHhccccchhhhcchhhchhhcccHHHHHHHhccCC
Confidence 344455555566667778888899999999988876654
No 223
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=84.99 E-value=4.8 Score=27.28 Aligned_cols=42 Identities=14% Similarity=0.150 Sum_probs=26.7
Q ss_pred ccccchhHHHHHhhhhccchHHHHHHHHHh-hHHHHHHHHHHH
Q psy12271 17 AGLSFPPGIFIVTSYFLKYRGLANGIAISG-SALGSIFLPPFL 58 (95)
Q Consensus 17 ~g~~~~~~~~~~~~~f~~~rg~a~gi~~~~-~~~g~~~~~~~~ 58 (95)
.+.........+.+..|+++|.++++.+.. ..+|..+++.+.
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~g~~~~ 343 (377)
T PRK11102 301 VSMISSNAMAVILDEFPHMAGTASSLAGTLRFGIGAIVGALLS 343 (377)
T ss_pred HHHhhHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555566777788999999987654 345555555543
No 224
>PF12597 DUF3767: Protein of unknown function (DUF3767); InterPro: IPR022533 This group of proteins includes mitochodrial cytochrome c oxidase proteins [], and some transmembrane domain-containing proteins of unknown function known as FAM36A. Proteins in this family are typically between 112 and 199 amino acids in length.
Probab=84.70 E-value=1.6 Score=25.87 Aligned_cols=26 Identities=27% Similarity=0.437 Sum_probs=12.1
Q ss_pred hHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271 47 SALGSIFLPPFLRYLLESYGYRRDTE 72 (95)
Q Consensus 47 ~~~g~~~~~~~~~~l~~~~gw~~~~~ 72 (95)
+++|+++..-++.|-.=.+.+|....
T Consensus 71 wavgsF~l~s~~~we~Cr~~r~~~~~ 96 (118)
T PF12597_consen 71 WAVGSFFLGSLGSWEYCRYNRRKERQ 96 (118)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555443344444433
No 225
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=84.19 E-value=3.5 Score=29.46 Aligned_cols=66 Identities=15% Similarity=0.091 Sum_probs=52.2
Q ss_pred HHHHHHHHhhccccchhHHHHHhhhhc---cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271 7 FSYGVFVGIGAGLSFPPGIFIVTSYFL---KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE 72 (95)
Q Consensus 7 ~~~~~l~G~g~g~~~~~~~~~~~~~f~---~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~ 72 (95)
...-++..+|......++-.++.+.-+ +.||...+.......+|.+++..+.+.+.+..+.|+.|.
T Consensus 90 ~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~ 158 (433)
T PF03092_consen 90 VVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFL 158 (433)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEeh
Confidence 334456667777777777777777764 357888889999999999999999999999999887775
No 226
>KOG1237|consensus
Probab=83.46 E-value=5.9 Score=29.67 Aligned_cols=61 Identities=15% Similarity=0.166 Sum_probs=51.1
Q ss_pred HHHHHHHHHHhhccccchhHHHHHhhhhcc-chHHHHHHHHHhhHHHHHHHHHHHHHHHhhc
Q psy12271 5 FAFSYGVFVGIGAGLSFPPGIFIVTSYFLK-YRGLANGIAISGSALGSIFLPPFLRYLLESY 65 (95)
Q Consensus 5 ~~~~~~~l~G~g~g~~~~~~~~~~~~~f~~-~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~ 65 (95)
..+-..++.|++.....+...-.--+-+|+ -|+.+++++....++|..+...+.......-
T Consensus 460 W~iPQyvLig~~Evf~~vg~lEFfY~qaP~sMkS~~~al~l~t~a~G~~lss~Lv~~v~~~t 521 (571)
T KOG1237|consen 460 WQIPQYVLLGAGEVFTSVGGLEFFYSQAPESMKSVATALWLLTVAVGNYLSSVLVSLVQFST 521 (571)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHhHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344566889999998888888888888885 9999999999999999999999997765443
No 227
>KOG4686|consensus
Probab=83.45 E-value=1.2 Score=31.27 Aligned_cols=56 Identities=25% Similarity=0.285 Sum_probs=44.8
Q ss_pred HHHHhhccccchhHHHHHhhhhcc-chHHHHHHHHHhhHHHHHHHHHHHHHHHhhcC
Q psy12271 11 VFVGIGAGLSFPPGIFIVTSYFLK-YRGLANGIAISGSALGSIFLPPFLRYLLESYG 66 (95)
Q Consensus 11 ~l~G~g~g~~~~~~~~~~~~~f~~-~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~g 66 (95)
.+.|+..++...+--..++...|+ +.|++.|...+...+|-.+.+++.+.+.++-|
T Consensus 360 ~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g 416 (459)
T KOG4686|consen 360 TFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDG 416 (459)
T ss_pred HHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCC
Confidence 456766665555555667788885 99999999999999999999999999987544
No 228
>KOG2816|consensus
Probab=82.56 E-value=4.5 Score=29.44 Aligned_cols=48 Identities=19% Similarity=0.246 Sum_probs=41.3
Q ss_pred hccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHh
Q psy12271 16 GAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLE 63 (95)
Q Consensus 16 g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~ 63 (95)
..+...|+.-++++.+.. +++|++.++....-.+++++.|++.+.+..
T Consensus 343 ~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~ 391 (463)
T KOG2816|consen 343 LAGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFA 391 (463)
T ss_pred hhcchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHH
Confidence 446678888889999986 699999999999999999999999887743
No 229
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=81.68 E-value=3.9 Score=30.83 Aligned_cols=56 Identities=21% Similarity=0.285 Sum_probs=42.2
Q ss_pred HHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy12271 7 FSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLL 62 (95)
Q Consensus 7 ~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~ 62 (95)
+.+.++.|+|.|....+...++.-..| ++-|+++|+..+.-.+|..++..+...+.
T Consensus 409 i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I~ 465 (599)
T PF06609_consen 409 IAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAIF 465 (599)
T ss_pred HHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 456678888888776666666655667 58899999999988888877777665543
No 230
>PRK10429 melibiose:sodium symporter; Provisional
Probab=81.48 E-value=8.9 Score=27.42 Aligned_cols=51 Identities=14% Similarity=-0.007 Sum_probs=35.2
Q ss_pred HHHHHHhhccccchhHHHHHhhhhc--cchHHHHHHHHHhhHHHHHHHHHHHH
Q psy12271 9 YGVFVGIGAGLSFPPGIFIVTSYFL--KYRGLANGIAISGSALGSIFLPPFLR 59 (95)
Q Consensus 9 ~~~l~G~g~g~~~~~~~~~~~~~f~--~~rg~a~gi~~~~~~~g~~~~~~~~~ 59 (95)
..++.+++..+..++..+++++.-+ ++|.+..++......+|..+.+.+..
T Consensus 112 ~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~ 164 (473)
T PRK10429 112 TYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTL 164 (473)
T ss_pred HHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566777777778888888873 69999999866666666555544433
No 231
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=80.98 E-value=3.9 Score=29.42 Aligned_cols=58 Identities=21% Similarity=0.205 Sum_probs=37.7
Q ss_pred HhhccccchhHHHHHhhhhc---cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271 14 GIGAGLSFPPGIFIVTSYFL---KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE 72 (95)
Q Consensus 14 G~g~g~~~~~~~~~~~~~f~---~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~ 72 (95)
|+..+..+.+...+...+-. ++.+.--|=.=+..++|.++++.+.|.+.+ .+-+..|+
T Consensus 111 ~i~l~~~f~~~~~~~Ea~~er~sr~~~feYG~~R~wGSig~ai~s~~~G~L~~-i~p~~~fw 171 (412)
T PF01306_consen 111 GIYLGLVFNAGVPLSEAYAERVSRRNGFEYGRARMWGSIGFAIASLLAGILFN-INPNIIFW 171 (412)
T ss_dssp TTTTTTTTTTHHHHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHcccchHHHHHHHHHHHHhcCCcchHHHHhhHHHHHHHHHhheeee-eCccHHHH
Confidence 45556666666666665553 455666677777788888888888888876 33344444
No 232
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=80.35 E-value=12 Score=27.41 Aligned_cols=62 Identities=11% Similarity=0.034 Sum_probs=47.0
Q ss_pred HHHHhhccccchhHHHHHhhhhc--cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271 11 VFVGIGAGLSFPPGIFIVTSYFL--KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE 72 (95)
Q Consensus 11 ~l~G~g~g~~~~~~~~~~~~~f~--~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~ 72 (95)
++.|+........--..+.+.+| .+|+..+|-+....++.+++...+.+.+.+.+||.....
T Consensus 274 i~y~~~~nlve~~~k~~v~~~~p~~~~~~~f~g~~~~~~gi~tl~~~l~~~~l~~~~Gw~~~a~ 337 (472)
T TIGR00769 274 IAYGISINLVEVTWKSKLKAQYPSPNEYSAFMGDFSTWTGVVSVTMMLLSGNVIRKYGWLTAAL 337 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 34555555555555566777777 488999999999888888888888899999999996443
No 233
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=79.42 E-value=8.8 Score=26.33 Aligned_cols=31 Identities=13% Similarity=0.169 Sum_probs=16.8
Q ss_pred chHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHH
Q psy12271 35 YRGLANGIAISGSALGSIFLPPFLRYLLESYGYRR 69 (95)
Q Consensus 35 ~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~ 69 (95)
+.|.+.++.. ++..+++.+.+++...+|+..
T Consensus 324 ~~g~~~~~~~----~~~~~g~~~~~~l~~~~g~~~ 354 (392)
T PRK10473 324 RAGVASSTLG----IAQVCGSSLWIWLAAVLGISA 354 (392)
T ss_pred cccHHHHHHH----HHHHHHHHHHHHHHHHhccch
Confidence 4455555554 445555555555555566553
No 234
>PRK03612 spermidine synthase; Provisional
Probab=78.67 E-value=14 Score=27.25 Aligned_cols=60 Identities=17% Similarity=0.224 Sum_probs=38.7
Q ss_pred HHHHHHhhccccchhHHHHHhhhhccchHHHHHHHHHhhHHHHHHHHHHHHHHH-hhcChH
Q psy12271 9 YGVFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLL-ESYGYR 68 (95)
Q Consensus 9 ~~~l~G~g~g~~~~~~~~~~~~~f~~~rg~a~gi~~~~~~~g~~~~~~~~~~l~-~~~gw~ 68 (95)
..++.++-.|+..|....+..+.-.++-|...|-....-.+|.++++.+.++++ +.+|-.
T Consensus 116 ~~~~~~~l~G~~~Pl~~~~~~~~~~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~ 176 (521)
T PRK03612 116 LVLLIGLLIGMEIPLLMRILQRIRDQHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLI 176 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchH
Confidence 334566666777777776666544334566677777777777777777777654 356654
No 235
>PRK11462 putative transporter; Provisional
Probab=77.17 E-value=18 Score=25.95 Aligned_cols=57 Identities=19% Similarity=0.234 Sum_probs=34.9
Q ss_pred HHHHhhccccchhHHHHHhhhhc-------cch-HHHHHHHHHhhHHHHHHHHHHHHHHHhhcCh
Q psy12271 11 VFVGIGAGLSFPPGIFIVTSYFL-------KYR-GLANGIAISGSALGSIFLPPFLRYLLESYGY 67 (95)
Q Consensus 11 ~l~G~g~g~~~~~~~~~~~~~f~-------~~r-g~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw 67 (95)
++.|++.+...+....++++-.+ ++| |...+......-+|..+++.+.+.++...|+
T Consensus 326 ~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~Gy 390 (460)
T PRK11462 326 FVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGGY 390 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 45566655544444445444433 322 5556666677778888888888887766555
No 236
>KOG3764|consensus
Probab=76.29 E-value=3.2 Score=30.13 Aligned_cols=37 Identities=24% Similarity=0.234 Sum_probs=33.3
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271 36 RGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE 72 (95)
Q Consensus 36 rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~ 72 (95)
-|.+.++...+.++|..++|.+++.+.+..|.+|.-.
T Consensus 401 YGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~ 437 (464)
T KOG3764|consen 401 YGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMT 437 (464)
T ss_pred eeeHHHHHHHHHHHhhhccccccchheeehhHHHHHH
Confidence 4788899999999999999999999999999998665
No 237
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=74.12 E-value=5.5 Score=28.57 Aligned_cols=53 Identities=17% Similarity=0.149 Sum_probs=33.9
Q ss_pred HHHHHhhccccchhHHHHHhhhhccchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCh
Q psy12271 10 GVFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLLESYGY 67 (95)
Q Consensus 10 ~~l~G~g~g~~~~~~~~~~~~~f~~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw 67 (95)
-++.++++|..=..-..+ +.+|++ ..++-+.+|.+.+.++++..-..+.. .|+
T Consensus 119 v~las~ssg~GE~tfL~l-t~~y~~---~~l~~wssGTG~aGl~Ga~~y~~lT~-~g~ 171 (402)
T PF02487_consen 119 VVLASLSSGLGEVTFLSL-THFYGK---SSLSAWSSGTGGAGLVGALYYLGLTT-LGL 171 (402)
T ss_pred HHHHhhhhhhhHHHHHHH-HHhcCc---cccccccCCcChhhHHHHHHHHHHHH-hCc
Confidence 344555555443444343 556665 35788888888888888887766665 665
No 238
>KOG0255|consensus
Probab=73.10 E-value=17 Score=26.23 Aligned_cols=56 Identities=21% Similarity=0.215 Sum_probs=43.6
Q ss_pred HHHHHHHHhhccccchhHHHHHhhhhcc-chHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy12271 7 FSYGVFVGIGAGLSFPPGIFIVTSYFLK-YRGLANGIAISGSALGSIFLPPFLRYLL 62 (95)
Q Consensus 7 ~~~~~l~G~g~g~~~~~~~~~~~~~f~~-~rg~a~gi~~~~~~~g~~~~~~~~~~l~ 62 (95)
+....+...+.+..+.......++++|. .|..+.+.......+|.+++|.+.-...
T Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~ 466 (521)
T KOG0255|consen 410 WILPLLGKFFIGSAFNLIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLR 466 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344445556666777778899999995 9999999999999999999888775443
No 239
>KOG2325|consensus
Probab=71.73 E-value=0.81 Score=33.52 Aligned_cols=65 Identities=15% Similarity=0.125 Sum_probs=52.5
Q ss_pred HHHHHHHhhccccchhHHHHHhhhh-ccchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271 8 SYGVFVGIGAGLSFPPGIFIVTSYF-LKYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE 72 (95)
Q Consensus 8 ~~~~l~G~g~g~~~~~~~~~~~~~f-~~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~ 72 (95)
.+-++.|++.-.+..+..++-++.. |++.+++.+++..+.+.+..++|.+....-..+|.|+...
T Consensus 393 ~~i~~~g~~~P~~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~~v~~ 458 (488)
T KOG2325|consen 393 SFIVVFGIAFPFISTALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLSGPRPVWI 458 (488)
T ss_pred ehhheeccccccccchHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhcCccHHHH
Confidence 3445556665556667777888888 5899999999999999999999999999988888887654
No 240
>KOG3098|consensus
Probab=71.56 E-value=25 Score=25.77 Aligned_cols=50 Identities=16% Similarity=0.164 Sum_probs=37.7
Q ss_pred HHHHHHHHHHhhccccchhHHHHHhhhhccchHHHHHHHHHhhHHHHHHH
Q psy12271 5 FAFSYGVFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFL 54 (95)
Q Consensus 5 ~~~~~~~l~G~g~g~~~~~~~~~~~~~f~~~rg~a~gi~~~~~~~g~~~~ 54 (95)
+.+..+++.|++-++.......++....|++|..+.++.-.-.+++..++
T Consensus 355 ~~~ii~~l~G~~D~~~~t~~~~ii~~~~~~~~~~~fsi~kfyq~~~s~v~ 404 (461)
T KOG3098|consen 355 LALIIGFLLGFGDACFNTQRYVIIALLYPDDRAQAFSLFKFYQSVASCVA 404 (461)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH
Confidence 45667788999988888888889999998888877777755555554443
No 241
>KOG2816|consensus
Probab=71.53 E-value=10 Score=27.65 Aligned_cols=54 Identities=19% Similarity=0.150 Sum_probs=46.4
Q ss_pred ccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271 19 LSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE 72 (95)
Q Consensus 19 ~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~ 72 (95)
.+......++++--. ++|....|+.......+..++|.+++++.+.+|.-..+.
T Consensus 128 ~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ 182 (463)
T KOG2816|consen 128 AIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFL 182 (463)
T ss_pred hhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHH
Confidence 445667777888886 599999999999999999999999999999988777665
No 242
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=65.90 E-value=6.5 Score=29.58 Aligned_cols=59 Identities=14% Similarity=0.105 Sum_probs=40.9
Q ss_pred HHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhh-HHHHHHHHHHHHHHHhh
Q psy12271 6 AFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGS-ALGSIFLPPFLRYLLES 64 (95)
Q Consensus 6 ~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~-~~g~~~~~~~~~~l~~~ 64 (95)
|+...++..+..++...+...++-+-.| ++|..++|+-.... -+|.+-+|++.|++++.
T Consensus 521 f~~~~~~~~~~~~~~~~p~~~i~lR~V~~~~rs~alg~~~~~~rllg~iP~pi~fG~~iD~ 581 (633)
T TIGR00805 521 FLILFIPLSFIAFITAVPLYMVLLRVVNPEEKSLAIGLQWLCMRVFATIPAPILFGLLIDV 581 (633)
T ss_pred HHHHHHHHHHHHHhccCchheEEeeccCcccchHHhhHHHHHHHHhcCCChhHHHhhhhhc
Confidence 4444344445555556666667777776 69999999986554 46778888888888873
No 243
>KOG0254|consensus
Probab=65.26 E-value=50 Score=23.96 Aligned_cols=45 Identities=22% Similarity=0.406 Sum_probs=34.7
Q ss_pred hhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcC
Q psy12271 22 PPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYG 66 (95)
Q Consensus 22 ~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~g 66 (95)
+....+.++.|| +-|+++.++......+.+.+.......+.+..+
T Consensus 414 ~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~ 459 (513)
T KOG0254|consen 414 PVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALG 459 (513)
T ss_pred cchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344468899999 699999999988888888877776666666544
No 244
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=63.19 E-value=58 Score=24.09 Aligned_cols=47 Identities=11% Similarity=0.117 Sum_probs=36.7
Q ss_pred HHHhhhhc--cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271 26 FIVTSYFL--KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE 72 (95)
Q Consensus 26 ~~~~~~f~--~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~ 72 (95)
..+.+.+| +++..-+|-+....++-+.+...+.+.+++.+||+..-.
T Consensus 305 ~~lk~~~~~~~~ysafmG~~~~~tGivtii~~~l~~~iir~~GW~~~Al 353 (491)
T PF03219_consen 305 SQLKQLYPDPNDYSAFMGKFSSWTGIVTIIMMFLSSNIIRRFGWRTAAL 353 (491)
T ss_pred HHHHHHCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 34556666 377778888888888888888888999999999996544
No 245
>PF12832 MFS_1_like: MFS_1 like family
Probab=62.19 E-value=23 Score=19.04 Aligned_cols=45 Identities=20% Similarity=0.332 Sum_probs=32.6
Q ss_pred HHhhhhc-c-chHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhh
Q psy12271 27 IVTSYFL-K-YRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDT 71 (95)
Q Consensus 27 ~~~~~f~-~-~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~ 71 (95)
..+.|+. . --..-+|+......+-.++++|+.+.+.+.++-+...
T Consensus 22 fl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~ 68 (77)
T PF12832_consen 22 FLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVI 68 (77)
T ss_pred hhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHH
Confidence 3444443 1 3456677888888888999999999999988866543
No 246
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=60.71 E-value=18 Score=26.81 Aligned_cols=55 Identities=15% Similarity=0.090 Sum_probs=46.9
Q ss_pred HHHHHHHHHHhhccccchhHHHHHhhhhcc-chHHHHHHHHHhhHHHHHHHHHHHH
Q psy12271 5 FAFSYGVFVGIGAGLSFPPGIFIVTSYFLK-YRGLANGIAISGSALGSIFLPPFLR 59 (95)
Q Consensus 5 ~~~~~~~l~G~g~g~~~~~~~~~~~~~f~~-~rg~a~gi~~~~~~~g~~~~~~~~~ 59 (95)
+.+...+++++|+=+..|.....+++.-|+ -.+.+++.+......|..+...+.+
T Consensus 396 ~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~ 451 (498)
T COG3104 396 WLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAG 451 (498)
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecc
Confidence 344455889999999999999999999995 8899999999998888888877776
No 247
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=60.65 E-value=0.22 Score=34.87 Aligned_cols=46 Identities=22% Similarity=0.416 Sum_probs=38.1
Q ss_pred chhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcC
Q psy12271 21 FPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYG 66 (95)
Q Consensus 21 ~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~g 66 (95)
.+....+.++.|| +.|+++.++......++.++.+.+...+.+..+
T Consensus 367 ~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~ 413 (451)
T PF00083_consen 367 GPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLG 413 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 3555577899999 699999999999999999988888887776665
No 248
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=60.47 E-value=35 Score=23.81 Aligned_cols=48 Identities=13% Similarity=0.205 Sum_probs=21.4
Q ss_pred hccccchhHHHHHhhhhccchHHHHHHHHHhhHHHHHHHHHHHHHHHh
Q psy12271 16 GAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLLE 63 (95)
Q Consensus 16 g~g~~~~~~~~~~~~~f~~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~ 63 (95)
|.+.+-+++...++.-++.....|......+.-+-.++.|.+..|+..
T Consensus 258 GnAIcgpAAVaAadP~~~~~~~~Ataqvaa~vivTail~P~~t~~~~k 305 (312)
T PRK12460 258 GNAVATPLAIAAADPSLAPVAAAATAQVAASVIVTAILTPLLTSWVAK 305 (312)
T ss_pred hHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444443344444444444444445555555554443
No 249
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=59.93 E-value=58 Score=24.03 Aligned_cols=66 Identities=17% Similarity=0.177 Sum_probs=45.7
Q ss_pred hhHHHHHHHHHHhhccccchhHHHHHhhhhc-------c-chHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChH
Q psy12271 3 SHFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-------K-YRGLANGIAISGSALGSIFLPPFLRYLLESYGYR 68 (95)
Q Consensus 3 ~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-------~-~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~ 68 (95)
..+.++..++.++|.+...+..-+++++-.+ + +-|...|+.....=+|..++..+.++++..+|..
T Consensus 327 ~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~Gyv 400 (467)
T COG2211 327 VVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAIGYV 400 (467)
T ss_pred hHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 4556666678888888887777777665543 1 2256666666666678888888888888877654
No 250
>PRK09848 glucuronide transporter; Provisional
Probab=59.17 E-value=57 Score=22.98 Aligned_cols=39 Identities=13% Similarity=-0.055 Sum_probs=24.4
Q ss_pred HHHHHhhccccchhHHHHHhhhhc--cchHHHHHHHHHhhH
Q psy12271 10 GVFVGIGAGLSFPPGIFIVTSYFL--KYRGLANGIAISGSA 48 (95)
Q Consensus 10 ~~l~G~g~g~~~~~~~~~~~~~f~--~~rg~a~gi~~~~~~ 48 (95)
.++.+++.++..++..++.....+ ++|....++-..+..
T Consensus 116 ~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~ 156 (448)
T PRK09848 116 YMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAAS 156 (448)
T ss_pred HHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHH
Confidence 355677777766666665555443 578888776655434
No 251
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=59.13 E-value=71 Score=23.65 Aligned_cols=39 Identities=13% Similarity=0.037 Sum_probs=34.3
Q ss_pred HHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHh
Q psy12271 25 IFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLE 63 (95)
Q Consensus 25 ~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~ 63 (95)
-...++.++ ++-.+-.++...+..+|.++++.+..++.+
T Consensus 166 W~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 166 WGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556788886 788899999999999999999999988887
No 252
>PHA02706 hypothetical protein; Provisional
Probab=57.77 E-value=4.4 Score=20.30 Aligned_cols=26 Identities=19% Similarity=0.408 Sum_probs=14.5
Q ss_pred HHHhhccccchhHHHHHhhhhccchH
Q psy12271 12 FVGIGAGLSFPPGIFIVTSYFLKYRG 37 (95)
Q Consensus 12 l~G~g~g~~~~~~~~~~~~~f~~~rg 37 (95)
++-+|.+....-....++.||.++|.
T Consensus 14 mmllgi~siiidtvifinayfvkkr~ 39 (58)
T PHA02706 14 MMLLGIASIIIDTVIFINAYFVKKRK 39 (58)
T ss_pred HHHHhhHHHhhheeeeeehhhhhhhh
Confidence 33344444444455667778876553
No 253
>PF15192 TMEM213: TMEM213 family
Probab=55.80 E-value=10 Score=20.73 Aligned_cols=25 Identities=8% Similarity=0.141 Sum_probs=16.0
Q ss_pred HHHHhhcChHHhhH---------HhccCccchhh
Q psy12271 59 RYLLESYGYRRDTE---------KVREKGEEEEE 83 (95)
Q Consensus 59 ~~l~~~~gw~~~~~---------~~~~~p~~~~~ 83 (95)
+|+...+||+--|. .++-.|++++.
T Consensus 46 GWIAAAVGWSLwFLTLILLCvdKlmKLtPdepK~ 79 (82)
T PF15192_consen 46 GWIAAAVGWSLWFLTLILLCVDKLMKLTPDEPKD 79 (82)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHhccCCCCccc
Confidence 56666678876555 44567777654
No 254
>PF07214 DUF1418: Protein of unknown function (DUF1418); InterPro: IPR010815 This family consists of several hypothetical Enterobacterial proteins of around 100 residues in length. Members of this family are often described as YbjC. In Escherichia coli the ybjC gene is located downstream of nfsA (which encodes the major oxygen-insensitive nitroreductase). It is thought that nfsA and ybjC form an operon an its promoter is a class I SoxS-dependent promoter []. The function of this family is unknown.
Probab=55.80 E-value=38 Score=19.46 Aligned_cols=11 Identities=9% Similarity=0.298 Sum_probs=6.3
Q ss_pred hhHHHHHhhhh
Q psy12271 22 PPGIFIVTSYF 32 (95)
Q Consensus 22 ~~~~~~~~~~f 32 (95)
..+...+++|.
T Consensus 23 v~a~Lsin~~l 33 (96)
T PF07214_consen 23 VLAYLSINDYL 33 (96)
T ss_pred HHHHHHHcccc
Confidence 34445577773
No 255
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=54.79 E-value=40 Score=23.88 Aligned_cols=31 Identities=16% Similarity=0.250 Sum_probs=19.1
Q ss_pred chHHHHHHHHHhhHHHHHHHHHHHHHHHhhc
Q psy12271 35 YRGLANGIAISGSALGSIFLPPFLRYLLESY 65 (95)
Q Consensus 35 ~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~ 65 (95)
-.+.+++..+.|.-.|.+++.|+..+++...
T Consensus 156 a~~vg~a~AT~Glv~G~liGgpi~~~lirk~ 186 (368)
T PF03616_consen 156 ATSVGMAAATFGLVVGGLIGGPIANWLIRKG 186 (368)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3345555556666666777777777766543
No 256
>PF11299 DUF3100: Protein of unknown function (DUF3100); InterPro: IPR021450 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=53.65 E-value=59 Score=21.85 Aligned_cols=46 Identities=13% Similarity=0.099 Sum_probs=28.1
Q ss_pred HHHHhhccccchhHHHHHhhhhccchHHHHHHHHHhhHHHHHHHHH
Q psy12271 11 VFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFLPP 56 (95)
Q Consensus 11 ~l~G~g~g~~~~~~~~~~~~~f~~~rg~a~gi~~~~~~~g~~~~~~ 56 (95)
.-.|+|.|.+..++...+...+|+......++.....-+.++.+-.
T Consensus 179 MasGvGSgSMMaAa~~aL~~~~P~~a~~i~A~AaaSNllt~~~G~Y 224 (241)
T PF11299_consen 179 MASGVGSGSMMAAASGALAAAYPEMADQILAFAAASNLLTSVTGLY 224 (241)
T ss_pred HHcCCcHHHHHHHHHHHHHHHCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777767777777777777876666666655444444444333
No 257
>KOG3626|consensus
Probab=52.39 E-value=12 Score=29.06 Aligned_cols=59 Identities=19% Similarity=0.191 Sum_probs=38.4
Q ss_pred HHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhH-HHHHHHHHHHHHHHhh
Q psy12271 6 AFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSA-LGSIFLPPFLRYLLES 64 (95)
Q Consensus 6 ~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~-~g~~~~~~~~~~l~~~ 64 (95)
|++..++.-+..+..-++...++-+-.+ ++|..|+|+-.+... +|.+=+|++.|++++.
T Consensus 589 Fl~~~~~~sf~~~~~~~p~~~i~LR~V~~e~ks~AlG~~~~~irllg~IPsPIifG~~ID~ 649 (735)
T KOG3626|consen 589 FLALFAIGSFIGALGAVPGMLIVLRCVPPEEKSFALGFQWMLIRLLGFIPSPIIFGAVIDT 649 (735)
T ss_pred HHHHHHHHHHHHHhccCcceEEEEEccCchhchhhhHHHHHHHHHHhcCCchHhhhhhHhh
Confidence 3333333333334445566666666665 799999999866655 6677777888888764
No 258
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=50.86 E-value=5.1 Score=29.66 Aligned_cols=60 Identities=18% Similarity=0.097 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhh-HHHHHHHHHHHHHHHhh
Q psy12271 5 FAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGS-ALGSIFLPPFLRYLLES 64 (95)
Q Consensus 5 ~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~-~~g~~~~~~~~~~l~~~ 64 (95)
.|+...++.-+..+....+...++-+-.+ ++|+.|+|+-.... -+|.+=+|.+.+.+++.
T Consensus 453 ~Fl~~~~~~~~~~~~~~~p~~~i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~ 514 (539)
T PF03137_consen 453 PFLILLFILSFFTFMSQVPSTLITLRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDS 514 (539)
T ss_dssp --------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHhcccchheeeeccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhh
Confidence 44444344444445556666666667776 69999999986554 46777788888888763
No 259
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=46.66 E-value=1e+02 Score=22.35 Aligned_cols=54 Identities=9% Similarity=0.065 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHH
Q psy12271 5 FAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFL 58 (95)
Q Consensus 5 ~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~ 58 (95)
+++...++.|+.-|.....+.....+..+ ++|..+-.+......+|..+++.+.
T Consensus 374 ~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~ 428 (437)
T TIGR00939 374 YFIILMLLFGFSNGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLS 428 (437)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455567777766555555555666665 6888888888777777777777654
No 260
>COG1284 Uncharacterized conserved protein [Function unknown]
Probab=45.01 E-value=36 Score=23.40 Aligned_cols=44 Identities=30% Similarity=0.346 Sum_probs=30.9
Q ss_pred HHHHHHHHHhhccccc-----hhHHHHHhhhhccchHHHHHHHHHhhHH
Q psy12271 6 AFSYGVFVGIGAGLSF-----PPGIFIVTSYFLKYRGLANGIAISGSAL 49 (95)
Q Consensus 6 ~~~~~~l~G~g~g~~~-----~~~~~~~~~~f~~~rg~a~gi~~~~~~~ 49 (95)
-+..+++.|+|.|..+ .-..-+++.+..|+++.-.|-.......
T Consensus 117 aifgG~l~G~G~glv~r~ggStGGtdIlA~~l~kk~g~~iG~~ll~vd~ 165 (289)
T COG1284 117 ALFGGLLLGIGLGLVFRHGGSTGGTDILALILNKKFGISVGKILLLVDG 165 (289)
T ss_pred HHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHcCCChhhhHHHHHH
Confidence 3557889999988654 3344578888887777777766665554
No 261
>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter. Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane
Probab=43.85 E-value=79 Score=23.45 Aligned_cols=61 Identities=25% Similarity=0.243 Sum_probs=41.7
Q ss_pred HHHHHHhhccccchhHHHH----HhhhhccchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcC---hHH
Q psy12271 9 YGVFVGIGAGLSFPPGIFI----VTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLLESYG---YRR 69 (95)
Q Consensus 9 ~~~l~G~g~g~~~~~~~~~----~~~~f~~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~g---w~~ 69 (95)
...+.|.|.-........+ +....|.+||..+........++++++..+.+.+-..++ |+.
T Consensus 264 ls~lvG~G~Qll~~~~~~~~~a~~g~~~~~~rg~l~t~~i~~y~~~~~iaGy~S~~~yk~~~g~~W~~ 331 (521)
T PF02990_consen 264 LSALVGTGIQLLFMALVTLFFAALGFLSPNNRGSLLTAAIILYALTSFIAGYVSARLYKSFGGKKWKK 331 (521)
T ss_pred HHhHhcchhhhhHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCceee
Confidence 4456777766554433332 222235689999999999999999999999988877664 654
No 262
>PF10225 DUF2215: Uncharacterized conserved protein (DUF2215); InterPro: IPR024233 This entry represents a domain that is found in a number of different proteins, including a family of transmembrane proteins.
Probab=43.12 E-value=1e+02 Score=20.69 Aligned_cols=49 Identities=20% Similarity=0.356 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhhccccchhHHHHHhhhhccchHHHHHHHHHhhHHHHHHHHH
Q psy12271 5 FAFSYGVFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFLPP 56 (95)
Q Consensus 5 ~~~~~~~l~G~g~g~~~~~~~~~~~~~f~~~rg~a~gi~~~~~~~g~~~~~~ 56 (95)
+|.+.++..|+- .......-..++..| +|.....+...+.+++..+...
T Consensus 36 FyY~sg~~lGv~--~s~li~~~~~~k~lP-rk~~~~~~l~gg~~~~~y~l~~ 84 (249)
T PF10225_consen 36 FYYSSGISLGVL--ASLLILLFQLSKLLP-RKSMFYAVLYGGWSFGLYFLQQ 84 (249)
T ss_pred HHHhhhHHHHHH--HHHHHHHHHHHHHcc-CcchhHHHHhhhhHHHHHHHHH
Confidence 444444444432 223444456778888 5555555555555555444333
No 263
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.89 E-value=71 Score=18.91 Aligned_cols=32 Identities=19% Similarity=0.448 Sum_probs=24.1
Q ss_pred cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhc
Q psy12271 34 KYRGLANGIAISGSALGSIFLPPFLRYLLESY 65 (95)
Q Consensus 34 ~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~ 65 (95)
+.++.+.++-.+.-.++.++...+.+|++.+|
T Consensus 38 s~k~~~~a~klssefIsGilVGa~iG~llD~~ 69 (116)
T COG5336 38 SIKGYAQAFKLSSEFISGILVGAGIGWLLDKF 69 (116)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46677777777777777788888888888765
No 264
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=38.17 E-value=1.1e+02 Score=19.74 Aligned_cols=44 Identities=23% Similarity=0.194 Sum_probs=30.6
Q ss_pred cchhHHH-HHhhhhc--c--chHHHHHHHHHhhHHHHHHHHHHHHHHHh
Q psy12271 20 SFPPGIF-IVTSYFL--K--YRGLANGIAISGSALGSIFLPPFLRYLLE 63 (95)
Q Consensus 20 ~~~~~~~-~~~~~f~--~--~rg~a~gi~~~~~~~g~~~~~~~~~~l~~ 63 (95)
.+..+.. ..+-||- | +.+++.++...+..+|.+++..+..++..
T Consensus 118 ~l~Lal~~~~~iyfl~~K~~~~~rA~~~~~~~L~~G~~lGs~l~~~l~~ 166 (194)
T PF11833_consen 118 GLQLALGLGACIYFLNRKERKLGRAFLWTLGGLVVGLILGSLLASWLPV 166 (194)
T ss_pred chHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 3433433 3455663 3 56889999988889999998888887754
No 265
>KOG1237|consensus
Probab=37.49 E-value=55 Score=24.69 Aligned_cols=61 Identities=15% Similarity=0.117 Sum_probs=48.2
Q ss_pred HHHhhccccchhHHHHHhhhhc---c----chHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271 12 FVGIGAGLSFPPGIFIVTSYFL---K----YRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE 72 (95)
Q Consensus 12 l~G~g~g~~~~~~~~~~~~~f~---~----~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~ 72 (95)
+..+|.|...+.....-++-|+ + ++..-+.++....++|..+...+..++-++.||...|.
T Consensus 161 lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~ 228 (571)
T KOG1237|consen 161 LIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFG 228 (571)
T ss_pred HheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcccceeecc
Confidence 4556888889999898888887 1 22366778888889999999998888888899997664
No 266
>PF13782 SpoVAB: Stage V sporulation protein AB
Probab=35.02 E-value=98 Score=18.22 Aligned_cols=51 Identities=24% Similarity=0.247 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhhccccchhHHHHHhhhhc--cch---HHHHHHHHHhhHHHHHHHHH
Q psy12271 5 FAFSYGVFVGIGAGLSFPPGIFIVTSYFL--KYR---GLANGIAISGSALGSIFLPP 56 (95)
Q Consensus 5 ~~~~~~~l~G~g~g~~~~~~~~~~~~~f~--~~r---g~a~gi~~~~~~~g~~~~~~ 56 (95)
+...++++.|+..|+...+ .+-+-.-|| .|| .....+...+..+|-.+++.
T Consensus 50 ~~~i~GL~~GiFvG~la~A-LaEvlnv~PIlarRi~l~~~i~~li~aialGK~~GsL 105 (110)
T PF13782_consen 50 LLIIFGLFAGIFVGCLAAA-LAEVLNVFPILARRIGLRRGIPYLIMAIALGKVIGSL 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHh
Confidence 3455778888877765443 444555555 233 33344445555566555554
No 267
>COG4721 ABC-type cobalt transport system, predicted permease component [Inorganic ion transport and metabolism]
Probab=34.49 E-value=1.3e+02 Score=19.35 Aligned_cols=58 Identities=28% Similarity=0.315 Sum_probs=27.7
Q ss_pred HHHHHHHHhhccccchhHHHHHhhhhc-cchHHHH-HHHHHhhHHHHHHHHHHH-HHHHhhcChHHhhH
Q psy12271 7 FSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLAN-GIAISGSALGSIFLPPFL-RYLLESYGYRRDTE 72 (95)
Q Consensus 7 ~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~-gi~~~~~~~g~~~~~~~~-~~l~~~~gw~~~~~ 72 (95)
+..+++||+|.=..+.. |. ++++..+ -+..++..+++++.-.+- +++....||--.+.
T Consensus 95 ivsgfvQGlgaE~vFa~--------~kyr~~Sl~~~mlagmg~~~~sf~~eyf~~Gyla~s~~fnli~l 155 (192)
T COG4721 95 IVSGFVQGLGAEFVFAV--------TKYRYYSLPVLMLAGMGITLASFVYEYFKLGYLAFSLGFNLILL 155 (192)
T ss_pred HHHHHHHhhhhhHHHHH--------HHHHHhhHHHHHHHhhchhHHHHHHHHHHHhHHhhccchhHHHH
Confidence 45677788765443333 22 2222221 122333334444333333 66667777776555
No 268
>PF03839 Sec62: Translocation protein Sec62; InterPro: IPR004728 Members of the NSCC2 family have been sequenced from various yeast, fungal and animals species including Saccharomyces cerevisiae, Drosophila melanogaster and Homo sapiens. These proteins are the Sec62 proteins, believed to be associated with the Sec61 and Sec63 constituents of the general protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins have been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016021 integral to membrane
Probab=34.25 E-value=87 Score=20.81 Aligned_cols=15 Identities=33% Similarity=0.277 Sum_probs=7.7
Q ss_pred HHHHHHhhccccchh
Q psy12271 9 YGVFVGIGAGLSFPP 23 (95)
Q Consensus 9 ~~~l~G~g~g~~~~~ 23 (95)
..++.|+...+++|.
T Consensus 116 ~~~~~~v~a~~lFPl 130 (224)
T PF03839_consen 116 ALLLVGVIAICLFPL 130 (224)
T ss_pred HHHHHHHHHHHhhhc
Confidence 445555544445555
No 269
>PF09490 CbtA: Probable cobalt transporter subunit (CbtA)
Probab=33.67 E-value=96 Score=20.58 Aligned_cols=41 Identities=12% Similarity=0.148 Sum_probs=20.1
Q ss_pred HHHHHHHHhhccccchhHHHHHhhhhccchHHHHHHHHHhhH
Q psy12271 7 FSYGVFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSA 48 (95)
Q Consensus 7 ~~~~~l~G~g~g~~~~~~~~~~~~~f~~~rg~a~gi~~~~~~ 48 (95)
++..++.|++.| .+............+...+..++...+.+
T Consensus 75 ~~~~~l~g~a~g-l~~~~~~~~~gr~~~~~~~~~al~la~~G 115 (227)
T PF09490_consen 75 LLGNVLFGIAFG-LFALAFAFLRGRLGPLSPRRLALLLAAAG 115 (227)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHhcccCCCChHHHHHHHHHHH
Confidence 445566777777 44444444433333333444444444333
No 270
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=32.92 E-value=1.4e+02 Score=21.79 Aligned_cols=37 Identities=11% Similarity=0.003 Sum_probs=25.8
Q ss_pred chHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhh
Q psy12271 35 YRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDT 71 (95)
Q Consensus 35 ~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~ 71 (95)
.+...++..--.=-++.+++|.+.+.+....+.+.+.
T Consensus 146 ~La~~NA~mRRIDL~ckllaPl~vG~l~t~~s~~~~~ 182 (432)
T PF06963_consen 146 ALARMNATMRRIDLFCKLLAPLFVGLLMTFASPVIAA 182 (432)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHH
Confidence 4455555555555677889999999988877766443
No 271
>COG2855 Predicted membrane protein [Function unknown]
Probab=32.72 E-value=91 Score=22.06 Aligned_cols=53 Identities=11% Similarity=0.169 Sum_probs=38.5
Q ss_pred HHHHHhhccccchhHHHHHhhhhc---cchHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy12271 10 GVFVGIGAGLSFPPGIFIVTSYFL---KYRGLANGIAISGSALGSIFLPPFLRYLL 62 (95)
Q Consensus 10 ~~l~G~g~g~~~~~~~~~~~~~f~---~~rg~a~gi~~~~~~~g~~~~~~~~~~l~ 62 (95)
..+.|+|.+.|=.++...++.-.+ ++-..+.+.+..-..++.++.|.+..++.
T Consensus 124 a~Lia~GssICGasAiaA~~pvika~~~eva~aIa~V~lfgtia~llyP~l~~~l~ 179 (334)
T COG2855 124 ALLIAAGSSICGASAIAATAPVIKAEEEEVAVAIAVVVLFGTLAMLLYPLLYPLLG 179 (334)
T ss_pred HHHHHccchhhHHHHHHHhCCcCCCCccccceehhhHHHHHHHHHHHHHHHHHHhC
Confidence 356777877776666666666665 35677777778888888888888888765
No 272
>PF09905 DUF2132: Uncharacterized conserved protein (DUF2132); InterPro: IPR018668 This entry contains proteins that have no known function. ; PDB: 2JVW_A.
Probab=32.41 E-value=53 Score=17.37 Aligned_cols=18 Identities=33% Similarity=0.532 Sum_probs=12.6
Q ss_pred HHHHHHHHhhcChHHhhH
Q psy12271 55 PPFLRYLLESYGYRRDTE 72 (95)
Q Consensus 55 ~~~~~~l~~~~gw~~~~~ 72 (95)
-.+...+.++|||.....
T Consensus 12 e~il~~Lv~~yGW~~L~~ 29 (64)
T PF09905_consen 12 ETILTELVEHYGWEELGE 29 (64)
T ss_dssp HHHHHHHHHHT-HHHHHH
T ss_pred HHHHHHHHHHhCHHHHHh
Confidence 345667888999997666
No 273
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=32.25 E-value=1.9e+02 Score=20.66 Aligned_cols=66 Identities=17% Similarity=0.136 Sum_probs=35.0
Q ss_pred chhHHHHHHHHHHhhccccc-hhHHHHHhhhhcc-chHHHHHHHHH-----hhHHHHHHHHHHHHHHHhhcCh
Q psy12271 2 SSHFAFSYGVFVGIGAGLSF-PPGIFIVTSYFLK-YRGLANGIAIS-----GSALGSIFLPPFLRYLLESYGY 67 (95)
Q Consensus 2 ~~~~~~~~~~l~G~g~g~~~-~~~~~~~~~~f~~-~rg~a~gi~~~-----~~~~g~~~~~~~~~~l~~~~gw 67 (95)
+....+..+++.|++.+..+ .-..-++.++-++ .+....+-... +.++-.++...+..++.+..|.
T Consensus 120 ~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~ 192 (354)
T PF05631_consen 120 NYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGF 192 (354)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCC
Confidence 45567778899999888765 3344467776432 11122222222 2233345555555566665554
No 274
>PF06149 DUF969: Protein of unknown function (DUF969); InterPro: IPR010374 This is a family of uncharacterised bacterial membrane proteins.
Probab=32.07 E-value=1.5e+02 Score=19.61 Aligned_cols=35 Identities=23% Similarity=0.296 Sum_probs=28.0
Q ss_pred hhHHHHHHHHHHhhccccchhHHHHHhhhhccchH
Q psy12271 3 SHFAFSYGVFVGIGAGLSFPPGIFIVTSYFLKYRG 37 (95)
Q Consensus 3 ~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~~~rg 37 (95)
....+..++..|+..|+...-......+-|-++|.
T Consensus 21 ilVV~vAgivTgLvaG~~~~~iL~~lG~aFv~nR~ 55 (218)
T PF06149_consen 21 ILVVLVAGIVTGLVAGMSFVEILETLGKAFVDNRY 55 (218)
T ss_pred hhhhHHHHHHHHHHcCCCHHHHHHHHHHHHHhcch
Confidence 34456677888988888888888899999988885
No 275
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=32.01 E-value=2.5e+02 Score=22.00 Aligned_cols=51 Identities=18% Similarity=0.182 Sum_probs=32.9
Q ss_pred hhHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHH
Q psy12271 3 SHFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIF 53 (95)
Q Consensus 3 ~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~ 53 (95)
|.+.++.=++.++=.=..+|.=+-+-+.+-. +.+|++.+++.++..+-.-+
T Consensus 37 w~~~~~~d~~~~~r~e~~~p~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 88 (697)
T PF09726_consen 37 WALVLLADFMLEFRFEYLWPFWLLLRSVYDSFKYQGLAFSVFFVCIAFTSDL 88 (697)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 4445555555665555566766555555544 78899999998887765433
No 276
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=31.88 E-value=1e+02 Score=21.28 Aligned_cols=53 Identities=9% Similarity=0.073 Sum_probs=39.0
Q ss_pred HHHHHhhccccchhHHHHHhhhhc---cchHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy12271 10 GVFVGIGAGLSFPPGIFIVTSYFL---KYRGLANGIAISGSALGSIFLPPFLRYLL 62 (95)
Q Consensus 10 ~~l~G~g~g~~~~~~~~~~~~~f~---~~rg~a~gi~~~~~~~g~~~~~~~~~~l~ 62 (95)
+.+.+.|.+.|=..+...++.-.+ ++.+.+.+....-..+..++.|.+..++.
T Consensus 115 ~~Lia~GtsICG~SAi~A~a~~i~a~~~~~a~ava~V~lfg~vam~~~P~l~~~l~ 170 (305)
T PF03601_consen 115 AILIAAGTSICGASAIAATAPVIKAKEEDVAYAVATVFLFGTVAMFLYPLLGHALG 170 (305)
T ss_pred HHHHHhhcccchHHHHHHHcccccCCCCceeeeehHHHHHHHHHHHHHHHHHHHhC
Confidence 456777777776666666666664 47788888888888888888888887764
No 277
>PF10953 DUF2754: Protein of unknown function (DUF2754); InterPro: IPR020490 This entry contains membrane proteins with no known function.
Probab=31.36 E-value=13 Score=19.36 Aligned_cols=10 Identities=40% Similarity=0.537 Sum_probs=6.7
Q ss_pred HhccCccchh
Q psy12271 73 KVREKGEEEE 82 (95)
Q Consensus 73 ~~~~~p~~~~ 82 (95)
++|++|++..
T Consensus 58 iirrr~~e~~ 67 (70)
T PF10953_consen 58 IIRRRPEEVE 67 (70)
T ss_pred eeeecccccc
Confidence 5677877654
No 278
>KOG3880|consensus
Probab=31.30 E-value=1.2e+02 Score=21.82 Aligned_cols=49 Identities=14% Similarity=0.157 Sum_probs=36.3
Q ss_pred HHHHhhccccchhHHHHHhhhh-ccchHHHHHHHHHhhHHHHHHHHHHHH
Q psy12271 11 VFVGIGAGLSFPPGIFIVTSYF-LKYRGLANGIAISGSALGSIFLPPFLR 59 (95)
Q Consensus 11 ~l~G~g~g~~~~~~~~~~~~~f-~~~rg~a~gi~~~~~~~g~~~~~~~~~ 59 (95)
+.-|+-.|..|+-...-+.+-. |++|-.+++...++-++|..++..+.-
T Consensus 350 ~~EGLlGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lal 399 (409)
T KOG3880|consen 350 LFEGLLGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLAL 399 (409)
T ss_pred HHHhhcCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhc
Confidence 4457655666776666666544 579999999999998888888777653
No 279
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=30.88 E-value=1.9e+02 Score=20.29 Aligned_cols=18 Identities=17% Similarity=0.377 Sum_probs=8.5
Q ss_pred hccccchhHHHHHhhhhc
Q psy12271 16 GAGLSFPPGIFIVTSYFL 33 (95)
Q Consensus 16 g~g~~~~~~~~~~~~~f~ 33 (95)
|.+.+-+++...++..+.
T Consensus 266 G~aic~pAAvaa~~p~~~ 283 (326)
T PRK05274 266 GNAVATPAAVAAADPSFA 283 (326)
T ss_pred HHHHHHHHHHHhhccccc
Confidence 333444445455555553
No 280
>PF08570 DUF1761: Protein of unknown function (DUF1761); InterPro: IPR013879 This entry shows conserved fungal proteins with unknown function.
Probab=30.76 E-value=85 Score=18.36 Aligned_cols=6 Identities=17% Similarity=0.224 Sum_probs=2.3
Q ss_pred HHHHhh
Q psy12271 42 IAISGS 47 (95)
Q Consensus 42 i~~~~~ 47 (95)
++..++
T Consensus 107 ~I~~g~ 112 (126)
T PF08570_consen 107 LIDAGY 112 (126)
T ss_pred eHHHHH
Confidence 333333
No 281
>PF03474 DMA: DMRTA motif; InterPro: IPR005173 This region is found to the C terminus of the DM DNA-binding domain IPR001275 from INTERPRO []. DM-domain proteins with this motif are known as DMRTA proteins. The function of this region is unknown.
Probab=28.76 E-value=73 Score=15.12 Aligned_cols=22 Identities=27% Similarity=0.169 Sum_probs=15.3
Q ss_pred HHHHHhhhhcc-chHHHHHHHHH
Q psy12271 24 GIFIVTSYFLK-YRGLANGIAIS 45 (95)
Q Consensus 24 ~~~~~~~~f~~-~rg~a~gi~~~ 45 (95)
.+-++.+.||+ +|...-.+...
T Consensus 4 pidiL~rvFP~~kr~~Le~iL~~ 26 (39)
T PF03474_consen 4 PIDILTRVFPHQKRSVLELILQR 26 (39)
T ss_pred HHHHHHHHCCCCChHHHHHHHHH
Confidence 34678899994 88776666544
No 282
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=28.02 E-value=2.6e+02 Score=21.33 Aligned_cols=19 Identities=32% Similarity=0.690 Sum_probs=11.1
Q ss_pred HHHHHHHHHH-hhccccchh
Q psy12271 5 FAFSYGVFVG-IGAGLSFPP 23 (95)
Q Consensus 5 ~~~~~~~l~G-~g~g~~~~~ 23 (95)
+.+.+|++.| +|.|.....
T Consensus 354 f~lfFGmM~gD~GyGLil~l 373 (646)
T PRK05771 354 FPLFFGMMLGDAGYGLLLLL 373 (646)
T ss_pred HHHHHHHHHHhHHHHHHHHH
Confidence 3444666666 777765444
No 283
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=27.54 E-value=44 Score=20.35 Aligned_cols=31 Identities=10% Similarity=-0.004 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHhhccccchhHHHHHhhhhcc
Q psy12271 4 HFAFSYGVFVGIGAGLSFPPGIFIVTSYFLK 34 (95)
Q Consensus 4 ~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~~ 34 (95)
.=|++.-++.+++.+........++.+|.+|
T Consensus 98 t~Yia~~~il~il~~i~is~~~~~~yr~~r~ 128 (139)
T PHA03099 98 TSYIPSPGIVLVLVGIIITCCLLSVYRFTRR 128 (139)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHhhheeeec
Confidence 3456655666766666666677777777754
No 284
>KOG2533|consensus
Probab=27.29 E-value=49 Score=24.48 Aligned_cols=53 Identities=9% Similarity=0.014 Sum_probs=32.8
Q ss_pred cchhHHHHHhhhhc--cchHHHHHHHHHhhHHHHHHHHHHHHH-HHhhcChHHhhH
Q psy12271 20 SFPPGIFIVTSYFL--KYRGLANGIAISGSALGSIFLPPFLRY-LLESYGYRRDTE 72 (95)
Q Consensus 20 ~~~~~~~~~~~~f~--~~rg~a~gi~~~~~~~g~~~~~~~~~~-l~~~~gw~~~~~ 72 (95)
..+.+..-.+.-.. .+|-...+....+.+.+..+.+.+... ..+.|+|...|+
T Consensus 384 ~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~~~~~ap~y~~~~~f~ 439 (495)
T KOG2533|consen 384 TAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQLFRSLDAPRYGWGAVFY 439 (495)
T ss_pred HHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhhhcccccCcchhhhhHHH
Confidence 34444444445453 366666777777777776666666544 445688988884
No 285
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=26.85 E-value=2.3e+02 Score=19.94 Aligned_cols=30 Identities=13% Similarity=0.235 Sum_probs=16.8
Q ss_pred cchHHHHHHHHHhhHHHHHHHHHHHHHHHh
Q psy12271 34 KYRGLANGIAISGSALGSIFLPPFLRYLLE 63 (95)
Q Consensus 34 ~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~ 63 (95)
.....|..-...+.-+..++.|.+..|...
T Consensus 282 ~~~~~ATaQvAaavIvTail~P~lt~~~~k 311 (314)
T PF03812_consen 282 PYAASATAQVAAAVIVTAILTPILTSWWAK 311 (314)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555555556666666555543
No 286
>KOG0253|consensus
Probab=26.39 E-value=37 Score=25.00 Aligned_cols=40 Identities=20% Similarity=0.267 Sum_probs=32.0
Q ss_pred ccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHH
Q psy12271 19 LSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFL 58 (95)
Q Consensus 19 ~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~ 58 (95)
..+.+++.+--+.|| +-|++.+|.-....-+|.++.|.+.
T Consensus 450 g~fqvaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA 490 (528)
T KOG0253|consen 450 GAFQVAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIA 490 (528)
T ss_pred chheEEEEecCcccchhhhhcchhhhhhHHhhhhhhhhHHH
Confidence 345555566667899 6999999999998889999988877
No 287
>COG4327 Predicted membrane protein [Function unknown]
Probab=26.22 E-value=1.4e+02 Score=17.16 Aligned_cols=43 Identities=14% Similarity=0.037 Sum_probs=22.0
Q ss_pred hhhccchHHHHHHHHHhhHHHHHHHHHHHHHHH--hhcChHHhhH
Q psy12271 30 SYFLKYRGLANGIAISGSALGSIFLPPFLRYLL--ESYGYRRDTE 72 (95)
Q Consensus 30 ~~f~~~rg~a~gi~~~~~~~g~~~~~~~~~~l~--~~~gw~~~~~ 72 (95)
+++-+.+.+.++.......+-++....+...+. .-+||...||
T Consensus 11 ~aywranttli~~lL~vwflVSfvvi~fa~alst~rifg~pf~yw 55 (101)
T COG4327 11 RAYWRANTTLIAALLGVWFLVSFVVILFARALSTMRIFGWPFGYW 55 (101)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhcccEEeccchhhh
Confidence 333343334444444444444555455555544 3468888777
No 288
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=26.05 E-value=1.2e+02 Score=22.18 Aligned_cols=37 Identities=19% Similarity=0.119 Sum_probs=23.0
Q ss_pred hhhhccchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcC
Q psy12271 29 TSYFLKYRGLANGIAISGSALGSIFLPPFLRYLLESYG 66 (95)
Q Consensus 29 ~~~f~~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~g 66 (95)
++.-+..++-..+...-...+|++++-.... +++..|
T Consensus 194 s~itg~s~~~~~s~lipal~igNvfAIi~aa-ll~~iG 230 (438)
T COG3493 194 SSITGGSQEEYFSQLIPALTIGNVFAIICAA-LLNKIG 230 (438)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHc
Confidence 3355567777777777777788877554444 444444
No 289
>TIGR00681 kdpC K+-transporting ATPase, C subunit. This chain has a single predicted transmembrane region near the amino end. It is part of a K+-transport ATPase that contains two other membrane-bound subunits, KdpA and KdpB, and a small subunit KdpF. KdpA is the K+-translocating subunit, KdpB the ATP-hydrolyzing subunit. During assembly of the complex, KdpA and KdpC bind to each other. This interaction is thought to stabilize the complex [PubMed:9858692]. Data indicates that KdpC might connect the KdpA, the K+-transporting subunit, to KdpB, the ATP-hydrolyzing (energy providing) subunit [PubMed:9858692].
Probab=25.39 E-value=1.1e+02 Score=19.81 Aligned_cols=18 Identities=22% Similarity=0.419 Sum_probs=13.5
Q ss_pred cccchhHHHHHhhh-hccc
Q psy12271 18 GLSFPPGIFIVTSY-FLKY 35 (95)
Q Consensus 18 g~~~~~~~~~~~~~-f~~~ 35 (95)
|..||...+.+++. ||++
T Consensus 18 G~~YPl~vtgiaq~~FP~q 36 (187)
T TIGR00681 18 GLVYPLIVTVIGQLVFPYQ 36 (187)
T ss_pred HHHHHHHHHHHHHhhcccc
Confidence 45599999988887 5753
No 290
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=25.28 E-value=1.2e+02 Score=21.36 Aligned_cols=52 Identities=13% Similarity=0.271 Sum_probs=35.5
Q ss_pred HHHHhhccccchhHHHHHhhhhc---cchHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy12271 11 VFVGIGAGLSFPPGIFIVTSYFL---KYRGLANGIAISGSALGSIFLPPFLRYLL 62 (95)
Q Consensus 11 ~l~G~g~g~~~~~~~~~~~~~f~---~~rg~a~gi~~~~~~~g~~~~~~~~~~l~ 62 (95)
.+.+.|.+.|=.++...++.-.+ ++.+.+.+....-..+..++.|.+..++.
T Consensus 122 ~Lia~GtsICGaSAi~A~a~~i~A~~~~~a~ava~V~lfgt~am~l~P~l~~~l~ 176 (335)
T TIGR00698 122 ILLGAGSSICGAAAVAAIEPVIKAEKEKVSVAIAIVVIFGTTGIFLYPSIYHYAS 176 (335)
T ss_pred HHHHcchhHHHHHHHHHhccccCCCccceeeeehHHHHHHHHHHHHHHHHHHHHc
Confidence 45566666554444444555553 47788888888888888888888886653
No 291
>PRK15035 cytochrome bd-II oxidase subunit 1; Provisional
Probab=24.55 E-value=1e+02 Score=23.18 Aligned_cols=25 Identities=24% Similarity=0.327 Sum_probs=16.9
Q ss_pred hhHHHHHHHHHHhhccccchhHHHH
Q psy12271 3 SHFAFSYGVFVGIGAGLSFPPGIFI 27 (95)
Q Consensus 3 ~~~~~~~~~l~G~g~g~~~~~~~~~ 27 (95)
+..|..++++.|+|.-+.......+
T Consensus 384 ~~~f~sFriMVglG~l~~ll~~~~l 408 (514)
T PRK15035 384 APVFWSFRIMVGCGSLLLLVMLIAL 408 (514)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999865544444333
No 292
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=24.37 E-value=2e+02 Score=21.28 Aligned_cols=40 Identities=10% Similarity=-0.058 Sum_probs=34.4
Q ss_pred hHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy12271 23 PGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLL 62 (95)
Q Consensus 23 ~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~ 62 (95)
.--..+++.+. ++-.+-.+++..+.++|.++++.+..++.
T Consensus 149 lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 149 LFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34457888886 68889999999999999999999998877
No 293
>PRK13995 potassium-transporting ATPase subunit C; Provisional
Probab=24.10 E-value=1.2e+02 Score=19.93 Aligned_cols=17 Identities=35% Similarity=0.469 Sum_probs=13.3
Q ss_pred cccchhHHHHHhhh-hcc
Q psy12271 18 GLSFPPGIFIVTSY-FLK 34 (95)
Q Consensus 18 g~~~~~~~~~~~~~-f~~ 34 (95)
|..||...+.+++. ||+
T Consensus 19 G~~YPl~vtgiaq~~FP~ 36 (203)
T PRK13995 19 GLIYPLVLTGVSQVVFPK 36 (203)
T ss_pred HHHHHHHHHHHHHhhccC
Confidence 45599999988887 575
No 294
>PF02669 KdpC: K+-transporting ATPase, c chain; InterPro: IPR003820 Kdp, the high affinity ATP-driven K+-transport system of Escherichia coli, is a complex of the membrane-bound subunits KdpA, KdpB, KdpC and the small peptide KdpF. KdpC forms strong interactions with the KdpA subunit, serving to assemble and stabilise the Kdp complex []. It has been suggested that KdpC could be one of the connecting links between the energy providing subunit KdpB and the K+- transporting subunit KdpA []. The K+ transport system actively transports K+ ions via ATP hydrolysis.; GO: 0008556 potassium-transporting ATPase activity, 0006813 potassium ion transport, 0016020 membrane
Probab=23.84 E-value=70 Score=20.67 Aligned_cols=21 Identities=19% Similarity=0.357 Sum_probs=15.3
Q ss_pred hhccccchhHHHHHhhh-hccc
Q psy12271 15 IGAGLSFPPGIFIVTSY-FLKY 35 (95)
Q Consensus 15 ~g~g~~~~~~~~~~~~~-f~~~ 35 (95)
+-+|..||...+.+++. ||.+
T Consensus 16 vl~G~~YPl~vtgi~q~~fp~q 37 (188)
T PF02669_consen 16 VLCGLLYPLAVTGIAQLVFPDQ 37 (188)
T ss_pred HHHHHHHHHHHHHHHhhcCCCC
Confidence 33455699999999997 6753
No 295
>PF13038 DUF3899: Domain of unknown function (DUF3899)
Probab=22.27 E-value=42 Score=18.54 Aligned_cols=15 Identities=40% Similarity=0.798 Sum_probs=9.5
Q ss_pred hcChHHhhHHhccCc
Q psy12271 64 SYGYRRDTEKVREKG 78 (95)
Q Consensus 64 ~~gw~~~~~~~~~~p 78 (95)
.+|+|..+....+++
T Consensus 31 ~ygfrr~~~~~~~~~ 45 (92)
T PF13038_consen 31 SYGFRRLFRQIKKKK 45 (92)
T ss_pred HHHHHHHHHHhcccc
Confidence 357777777665554
No 296
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=22.26 E-value=1.1e+02 Score=20.60 Aligned_cols=14 Identities=7% Similarity=0.097 Sum_probs=8.8
Q ss_pred HHHHHHHHhhcChH
Q psy12271 55 PPFLRYLLESYGYR 68 (95)
Q Consensus 55 ~~~~~~l~~~~gw~ 68 (95)
..+.+|....+||-
T Consensus 92 n~l~Gw~~grfGlF 105 (254)
T PF07857_consen 92 NCLTGWASGRFGLF 105 (254)
T ss_pred HHHHHHHHhhceec
Confidence 45566776667664
No 297
>PF07274 DUF1440: Protein of unknown function (DUF1440); InterPro: IPR009898 This family contains a number of bacterial proteins of unknown function approximately 180 residues long. These are possibly integral membrane proteins.
Probab=21.87 E-value=1.3e+02 Score=18.34 Aligned_cols=30 Identities=27% Similarity=0.533 Sum_probs=20.0
Q ss_pred hhccccchhHHHHHhhhhcc-c--hHHHHHHHH
Q psy12271 15 IGAGLSFPPGIFIVTSYFLK-Y--RGLANGIAI 44 (95)
Q Consensus 15 ~g~g~~~~~~~~~~~~~f~~-~--rg~a~gi~~ 44 (95)
++.+..+...++++++.+|+ + .|.+.|+..
T Consensus 60 ~~FSi~fa~~Y~~~ae~~p~i~l~~G~~fGi~~ 92 (135)
T PF07274_consen 60 FGFSIVFAVAYCVLAEYWPKIKLWQGAAFGIVV 92 (135)
T ss_pred HHHHHHHHHHHHHHHHHCCccchhhhHHHHHHH
Confidence 45556667788899999985 3 355555443
No 298
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=21.83 E-value=95 Score=22.52 Aligned_cols=35 Identities=20% Similarity=0.166 Sum_probs=18.5
Q ss_pred chhHHHHHHHHHHhhccccchhHHHHHhhhhccch
Q psy12271 2 SSHFAFSYGVFVGIGAGLSFPPGIFIVTSYFLKYR 36 (95)
Q Consensus 2 ~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~~~r 36 (95)
...+++..-++.|++.|.....-...+---.+.++
T Consensus 2 ~~vl~l~~ll~agi~~g~~~~~qqgyVlI~~~~~~ 36 (400)
T COG3071 2 RRVLLLFVLLLAGIGVGLAIAGQQGYVLIQTDNYN 36 (400)
T ss_pred hhhHHHHHHHHHHHHHHHHHhccCCceEEEeccee
Confidence 34455555567777777655444444433343333
No 299
>KOG2563|consensus
Probab=21.15 E-value=1.9e+02 Score=21.58 Aligned_cols=53 Identities=15% Similarity=0.174 Sum_probs=22.3
Q ss_pred HHHHhhccccchhHHHHHhhhhcc-chHHHHHHHHHhhHHHHHHHHHHHHHHHh
Q psy12271 11 VFVGIGAGLSFPPGIFIVTSYFLK-YRGLANGIAISGSALGSIFLPPFLRYLLE 63 (95)
Q Consensus 11 ~l~G~g~g~~~~~~~~~~~~~f~~-~rg~a~gi~~~~~~~g~~~~~~~~~~l~~ 63 (95)
+..|++.|+.+.....+--..-++ .-+...|.......++..++..+.+.+.+
T Consensus 273 ~~ygi~~g~F~~l~~~l~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~D 326 (480)
T KOG2563|consen 273 ICYGIGLGLFNSLSTLLNLALCPSGYEGVFAGYIGALMIVAGMLGALASGIIAD 326 (480)
T ss_pred HHHhhhHHHHHHHHHHhhhccccccCCccccchhHHHHHHHHHHHHHHHHhhhh
Confidence 555666555544333222122221 22233444444444444444555554443
No 300
>PRK10692 hypothetical protein; Provisional
Probab=21.13 E-value=1.8e+02 Score=16.52 Aligned_cols=28 Identities=18% Similarity=0.207 Sum_probs=18.4
Q ss_pred HHHHHHHHHhhcccc-chhHHHHHhhhhc
Q psy12271 6 AFSYGVFVGIGAGLS-FPPGIFIVTSYFL 33 (95)
Q Consensus 6 ~~~~~~l~G~g~g~~-~~~~~~~~~~~f~ 33 (95)
.+..-+++|+|.-.+ -...+++.++.++
T Consensus 7 ~~~GN~lMglGmv~Mv~gigysi~~~i~~ 35 (92)
T PRK10692 7 SLLGNVLMGLGLVVMVVGVGYSILNQLPQ 35 (92)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhccc
Confidence 344456777776643 5667778888776
No 301
>PF14880 COX14: Cytochrome oxidase c assembly
Probab=20.63 E-value=1.4e+02 Score=15.20 Aligned_cols=22 Identities=14% Similarity=-0.185 Sum_probs=14.3
Q ss_pred hhhhcc-chHHHHHHHHHhhHHH
Q psy12271 29 TSYFLK-YRGLANGIAISGSALG 50 (95)
Q Consensus 29 ~~~f~~-~rg~a~gi~~~~~~~g 50 (95)
.++++. +|+++.+++......|
T Consensus 7 ~r~~D~~HR~tV~~Lig~T~~~g 29 (59)
T PF14880_consen 7 RRLADIAHRTTVLGLIGFTVYGG 29 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 455665 8988888876544433
No 302
>PF07787 DUF1625: Protein of unknown function (DUF1625); InterPro: IPR012430 Sequences making up this family are derived from hypothetical proteins expressed by both prokaryotic and eukaryotic species. The region in question is approximately 250 residues long.
Probab=20.49 E-value=2.7e+02 Score=18.41 Aligned_cols=29 Identities=21% Similarity=0.334 Sum_probs=14.9
Q ss_pred hHHHHHHHHHHhhccccchhHHHHHhhhhc
Q psy12271 4 HFAFSYGVFVGIGAGLSFPPGIFIVTSYFL 33 (95)
Q Consensus 4 ~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~ 33 (95)
.+=+...+++-+|..+.+.+ +..+.+++|
T Consensus 185 ~lR~~G~llmf~G~~~~~~~-l~~l~~~~P 213 (248)
T PF07787_consen 185 ILRFIGWLLMFIGFFLLFSP-LYTLVDWIP 213 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHhhhc
Confidence 33344445555554444433 345567777
No 303
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=20.44 E-value=4.1e+02 Score=20.54 Aligned_cols=53 Identities=13% Similarity=0.110 Sum_probs=40.7
Q ss_pred HHHHHHhhccccchhHHHHHhhhhcc-chHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy12271 9 YGVFVGIGAGLSFPPGIFIVTSYFLK-YRGLANGIAISGSALGSIFLPPFLRYL 61 (95)
Q Consensus 9 ~~~l~G~g~g~~~~~~~~~~~~~f~~-~rg~a~gi~~~~~~~g~~~~~~~~~~l 61 (95)
..++.++|.........-.-....|+ -|....+++....++|.++...+...-
T Consensus 571 q~~~~~~~e~~~~~~~~e~~~~~~p~~mks~~~a~~~~~~~~g~~~~~~~~~~~ 624 (654)
T TIGR00926 571 QYVILTAGEVLFSVTGLEFSYSQAPPNMKSVLQALWLLTVAIGNLIVVVIAEFE 624 (654)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34677777777766666666666775 889999999999999999888776653
No 304
>PHA00727 hypothetical protein
Probab=20.40 E-value=68 Score=21.09 Aligned_cols=15 Identities=33% Similarity=0.767 Sum_probs=10.4
Q ss_pred HHHHHHHHHHhhccc
Q psy12271 5 FAFSYGVFVGIGAGL 19 (95)
Q Consensus 5 ~~~~~~~l~G~g~g~ 19 (95)
++++.|.++|+|.|.
T Consensus 216 ~mliig~imgigigv 230 (278)
T PHA00727 216 MMLIIGAIMGIGIGV 230 (278)
T ss_pred HHHHHHHHHhcccce
Confidence 356677888877664
No 305
>PRK14000 potassium-transporting ATPase subunit C; Provisional
Probab=20.22 E-value=1.6e+02 Score=19.03 Aligned_cols=18 Identities=22% Similarity=0.451 Sum_probs=13.6
Q ss_pred ccccchhHHHHHhhh-hcc
Q psy12271 17 AGLSFPPGIFIVTSY-FLK 34 (95)
Q Consensus 17 ~g~~~~~~~~~~~~~-f~~ 34 (95)
+|..||...+.+++. ||.
T Consensus 18 ~G~~YPl~vtgiaq~~Fp~ 36 (185)
T PRK14000 18 CGFIFPLTVTALGQVLFPE 36 (185)
T ss_pred HHHHHHHHHHHHHHHhccc
Confidence 345699999988886 574
No 306
>TIGR00869 sec62 protein translocation protein, Sec62 family. protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins has been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.
Probab=20.03 E-value=2.9e+02 Score=18.56 Aligned_cols=18 Identities=28% Similarity=0.026 Sum_probs=9.2
Q ss_pred HHHHHHHHHhhccccchh
Q psy12271 6 AFSYGVFVGIGAGLSFPP 23 (95)
Q Consensus 6 ~~~~~~l~G~g~g~~~~~ 23 (95)
.+...++.|+-..+++|.
T Consensus 121 l~~~~~~~~ila~~lFPl 138 (232)
T TIGR00869 121 LIVILVVSIILALVLFPL 138 (232)
T ss_pred HHHHHHHHHHHHHhhccc
Confidence 344445555544455555
Done!