Query psy12271
Match_columns 95
No_of_seqs 122 out of 1345
Neff 9.2
Searched_HMMs 29240
Date Fri Aug 16 23:04:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12271.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12271hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pw4_A Glycerol-3-phosphate tr 99.1 1.3E-10 4.5E-15 78.9 5.2 70 3-72 119-190 (451)
2 3o7q_A L-fucose-proton symport 99.1 2.1E-10 7.3E-15 77.7 6.0 65 2-66 116-182 (438)
3 4aps_A DI-OR tripeptide H+ sym 99.0 2E-09 6.8E-14 74.1 7.1 71 2-72 107-180 (491)
4 2gfp_A EMRD, multidrug resista 98.9 6.3E-10 2.2E-14 74.3 2.2 70 3-72 88-158 (375)
5 4gc0_A D-xylose-proton symport 98.8 3.3E-08 1.1E-12 68.0 8.8 63 2-64 125-188 (491)
6 2xut_A Proton/peptide symporte 98.6 9.2E-08 3.1E-12 66.4 6.5 71 2-72 108-182 (524)
7 1pw4_A Glycerol-3-phosphate tr 98.2 4.9E-06 1.7E-10 56.3 7.2 68 5-72 348-417 (451)
8 2cfq_A Lactose permease; trans 97.6 4.4E-05 1.5E-09 51.9 3.4 62 11-72 320-383 (417)
9 2gfp_A EMRD, multidrug resista 97.6 3E-05 1E-09 51.5 2.1 67 6-72 294-360 (375)
10 4aps_A DI-OR tripeptide H+ sym 97.5 0.0001 3.5E-09 50.5 4.1 67 5-72 388-455 (491)
11 2xut_A Proton/peptide symporte 97.4 0.00012 4.1E-09 50.7 4.0 58 6-63 408-466 (524)
12 3o7q_A L-fucose-proton symport 97.3 0.00077 2.6E-08 45.3 6.9 61 11-72 355-416 (438)
13 4gc0_A D-xylose-proton symport 96.0 0.046 1.6E-06 37.2 8.1 41 21-61 388-429 (491)
14 2cfq_A Lactose permease; trans 95.5 0.0044 1.5E-07 42.0 1.3 60 12-72 109-171 (417)
15 1v54_J Cytochrome C oxidase po 23.7 60 0.0021 16.1 2.1 9 26-34 49-57 (59)
16 2jvw_A Uncharacterized protein 22.7 64 0.0022 17.4 2.2 17 56-72 19-35 (88)
17 2knc_B Integrin beta-3; transm 22.6 93 0.0032 16.2 2.9 21 66-87 31-51 (79)
18 2knc_A Integrin alpha-IIB; tra 20.2 51 0.0017 16.1 1.4 6 67-72 34-39 (54)
No 1
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.08 E-value=1.3e-10 Score=78.87 Aligned_cols=70 Identities=14% Similarity=0.179 Sum_probs=64.0
Q ss_pred hhHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcC-hHHhhH
Q psy12271 3 SHFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYG-YRRDTE 72 (95)
Q Consensus 3 ~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~g-w~~~~~ 72 (95)
+..++..+++.|++.+...++...++.+++| ++|++++++...+..+|..+++++.+++.+.+| ||+.|+
T Consensus 119 ~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~ 190 (451)
T 1pw4_A 119 IAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALY 190 (451)
T ss_dssp SSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTH
T ss_pred HHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 3456667899999999999999999999998 699999999999999999999999999999999 998876
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.07 E-value=2.1e-10 Score=77.66 Aligned_cols=65 Identities=14% Similarity=0.031 Sum_probs=58.1
Q ss_pred chhHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHH-hhcC
Q psy12271 2 SSHFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLL-ESYG 66 (95)
Q Consensus 2 ~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~-~~~g 66 (95)
++..++..+++.|++.+...++...++++++| ++|++++++...+..+|..+++++.+.+. ...+
T Consensus 116 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~ 182 (438)
T 3o7q_A 116 NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVP 182 (438)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSC
T ss_pred cHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 34566777899999999999999999999998 69999999999999999999999999998 5554
No 3
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=98.95 E-value=2e-09 Score=74.11 Aligned_cols=71 Identities=21% Similarity=0.272 Sum_probs=63.6
Q ss_pred chhHHHHHHHHHHhhccccchhHHHHHhhhhc-cc--hHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271 2 SSHFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KY--RGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE 72 (95)
Q Consensus 2 ~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~--rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~ 72 (95)
+...++..+++.|++.+...++...++++++| ++ |+.+.++...+..+|..+++++.+.+.+.+|||+.|+
T Consensus 107 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~ 180 (491)
T 4aps_A 107 GASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFS 180 (491)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 34556677899999999999999999999998 46 8889999999999999999999999999999999887
No 4
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.87 E-value=6.3e-10 Score=74.28 Aligned_cols=70 Identities=13% Similarity=0.114 Sum_probs=64.0
Q ss_pred hhHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271 3 SHFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE 72 (95)
Q Consensus 3 ~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~ 72 (95)
...++..+++.|++.+...+....++.+++| ++|++++++...+..+|..+++++.+++.+.+|||+.|.
T Consensus 88 ~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~ 158 (375)
T 2gfp_A 88 LTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYL 158 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHH
Confidence 3456667899999999999999999999998 699999999999999999999999999999899999887
No 5
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.80 E-value=3.3e-08 Score=67.96 Aligned_cols=63 Identities=16% Similarity=0.155 Sum_probs=55.5
Q ss_pred chhHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhh
Q psy12271 2 SSHFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLES 64 (95)
Q Consensus 2 ~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~ 64 (95)
++..++..|+++|+|.|..++.+..+++++.| ++|++..++...+..+|..+++.+...+...
T Consensus 125 ~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~ 188 (491)
T 4gc0_A 125 YVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARS 188 (491)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccc
Confidence 34567788999999999999999999999998 6999999999999999999988888777654
No 6
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.61 E-value=9.2e-08 Score=66.37 Aligned_cols=71 Identities=18% Similarity=0.160 Sum_probs=61.8
Q ss_pred chhHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHH---HHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271 2 SSHFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGI---AISGSALGSIFLPPFLRYLLESYGYRRDTE 72 (95)
Q Consensus 2 ~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi---~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~ 72 (95)
+...++..+++.|++.+...++...++++++| ++|+++.++ ...+..+|..+++++.+.+.+.+|||+.|.
T Consensus 108 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~ 182 (524)
T 2xut_A 108 SVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFG 182 (524)
T ss_dssp CHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHH
T ss_pred cHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 34456667789999999999999999999998 588777666 899999999999999999999999999887
No 7
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=98.21 E-value=4.9e-06 Score=56.28 Aligned_cols=68 Identities=15% Similarity=0.065 Sum_probs=58.3
Q ss_pred HHHHHHHHHHhhccccchhHHHHHhhhhcc-chHHHHHHHHHhhHH-HHHHHHHHHHHHHhhcChHHhhH
Q psy12271 5 FAFSYGVFVGIGAGLSFPPGIFIVTSYFLK-YRGLANGIAISGSAL-GSIFLPPFLRYLLESYGYRRDTE 72 (95)
Q Consensus 5 ~~~~~~~l~G~g~g~~~~~~~~~~~~~f~~-~rg~a~gi~~~~~~~-g~~~~~~~~~~l~~~~gw~~~~~ 72 (95)
.++...++.|++.+...+....++.+.+|+ +|++++|+......+ |..+++.+.+.+.+.+||+..|.
T Consensus 348 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~ 417 (451)
T 1pw4_A 348 VDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFM 417 (451)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHH
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 344455667777777778888899999984 899999999999999 99999999999999999998876
No 8
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=97.59 E-value=4.4e-05 Score=51.87 Aligned_cols=62 Identities=15% Similarity=0.124 Sum_probs=49.7
Q ss_pred HHHHhhccccchhHHHHHhhhhc-cchHHHHHHH-HHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271 11 VFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIA-ISGSALGSIFLPPFLRYLLESYGYRRDTE 72 (95)
Q Consensus 11 ~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~-~~~~~~g~~~~~~~~~~l~~~~gw~~~~~ 72 (95)
++.+++.+...+....++++.+| +.||++.++. +....+|..++|.+.+++.+.+|++..|.
T Consensus 320 ~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~ 383 (417)
T 2cfq_A 320 TLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYL 383 (417)
T ss_dssp THHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHH
Confidence 44555555455566778999998 5899999994 78888999999999999999888887775
No 9
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=97.56 E-value=3e-05 Score=51.49 Aligned_cols=67 Identities=18% Similarity=0.088 Sum_probs=58.3
Q ss_pred HHHHHHHHHhhccccchhHHHHHhhhhccchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271 6 AFSYGVFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE 72 (95)
Q Consensus 6 ~~~~~~l~G~g~g~~~~~~~~~~~~~f~~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~ 72 (95)
++...++.|++.+...+....++.+.+|++||++.|+.+....+|..+++.+.+.+.+..+++..+.
T Consensus 294 ~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~ 360 (375)
T 2gfp_A 294 LLVPAALFFFGAGMLFPLATSGAMEPFPFLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLL 360 (375)
T ss_dssp HHHHHHHHHHHHHHTSSTTHHHHHTHHHHHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHhCCcccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHH
Confidence 3345567888888889999999999999999999999999999999999999999988777877665
No 10
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=97.48 E-value=0.0001 Score=50.54 Aligned_cols=67 Identities=13% Similarity=0.088 Sum_probs=54.3
Q ss_pred HHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271 5 FAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE 72 (95)
Q Consensus 5 ~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~ 72 (95)
..+...++.|++.+...+....++.+.+| ++|++++|+......+|..+++.+.+.+.+ .+..+.|.
T Consensus 388 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~-~~~~~~~~ 455 (491)
T 4aps_A 388 WLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA-KSEVAYFS 455 (491)
T ss_dssp HHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG-SSTTHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHH
Confidence 34445577888988888999999999998 589999999999999999999999887754 35554444
No 11
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=97.44 E-value=0.00012 Score=50.69 Aligned_cols=58 Identities=10% Similarity=0.020 Sum_probs=51.2
Q ss_pred HHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHh
Q psy12271 6 AFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLE 63 (95)
Q Consensus 6 ~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~ 63 (95)
.+...++.|++.+...+....++.+.+| ++||+++|+.+....+|..+++.+.+.+.+
T Consensus 408 ~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~ 466 (524)
T 2xut_A 408 QILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKS 466 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4445678888888888999999999998 599999999999999999999999998875
No 12
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=97.33 E-value=0.00077 Score=45.31 Aligned_cols=61 Identities=7% Similarity=0.145 Sum_probs=53.2
Q ss_pred HHHHhhccccchhHHHHHhhhhccchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcC-hHHhhH
Q psy12271 11 VFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLLESYG-YRRDTE 72 (95)
Q Consensus 11 ~l~G~g~g~~~~~~~~~~~~~f~~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~g-w~~~~~ 72 (95)
++.|++.+..++....+..+.+|++++.+.++.. ...+|..++|++.+++.+..| ++..|.
T Consensus 355 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~ 416 (438)
T 3o7q_A 355 TLCSAFMSIQYPTIFSLGIKNLGQDTKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAEL 416 (438)
T ss_dssp HHHHHHHTTHHHHHHHHHHSSCGGGHHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGH
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 6778888888899989989999877999999888 455999999999999999999 988776
No 13
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=96.01 E-value=0.046 Score=37.24 Aligned_cols=41 Identities=22% Similarity=0.272 Sum_probs=33.4
Q ss_pred chhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy12271 21 FPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYL 61 (95)
Q Consensus 21 ~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l 61 (95)
.+....+.++.|| +.|++++|+......++.++.+.+.+.+
T Consensus 388 ~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l 429 (491)
T 4gc0_A 388 GPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMM 429 (491)
T ss_dssp THHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556678999999 6999999999988888888877766554
No 14
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=95.46 E-value=0.0044 Score=41.96 Aligned_cols=60 Identities=15% Similarity=0.115 Sum_probs=43.1
Q ss_pred HHHhhccccchhHHHHHhhhhc---cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271 12 FVGIGAGLSFPPGIFIVTSYFL---KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE 72 (95)
Q Consensus 12 l~G~g~g~~~~~~~~~~~~~f~---~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~ 72 (95)
+.|++.+..+++....+..+.+ ++|+.+.|....+..+|..++|++.+++.+ .+||+.|+
T Consensus 109 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~ 171 (417)
T 2cfq_A 109 VGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFVFW 171 (417)
T ss_dssp GGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHH
Confidence 3344444444444555666664 356777888888889999999999999887 68998886
No 15
>1v54_J Cytochrome C oxidase polypeptide VIIA-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.4.1 PDB: 1oco_J* 1occ_J* 1ocz_J* 1ocr_J* 1v55_J* 2dyr_J* 2dys_J* 2eij_J* 2eik_J* 2eil_J* 2eim_J* 2ein_J* 2occ_J* 2ybb_U* 2zxw_J* 3abk_J* 3abl_J* 3abm_J* 3ag1_J* 3ag2_J* ...
Probab=23.72 E-value=60 Score=16.06 Aligned_cols=9 Identities=11% Similarity=-0.009 Sum_probs=3.6
Q ss_pred HHHhhhhcc
Q psy12271 26 FIVTSYFLK 34 (95)
Q Consensus 26 ~~~~~~f~~ 34 (95)
.+...-||+
T Consensus 49 ~l~~~~~pk 57 (59)
T 1v54_J 49 CLGWASFPH 57 (59)
T ss_dssp HHHHHTSCC
T ss_pred HHHHHhcCC
Confidence 333333443
No 16
>2jvw_A Uncharacterized protein; solution structure, alpha helical protein, structural GE unknown function, PSI-2, protein structure initiative; NMR {Vibrio fischeri}
Probab=22.75 E-value=64 Score=17.35 Aligned_cols=17 Identities=29% Similarity=0.507 Sum_probs=13.0
Q ss_pred HHHHHHHhhcChHHhhH
Q psy12271 56 PFLRYLLESYGYRRDTE 72 (95)
Q Consensus 56 ~~~~~l~~~~gw~~~~~ 72 (95)
.+..-+++.|||.....
T Consensus 19 ~ilt~Lv~~YGW~~L~~ 35 (88)
T 2jvw_A 19 KLLTELVEHYGWEELSY 35 (88)
T ss_dssp HHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHhCHHHHHh
Confidence 45667888999997666
No 17
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=22.63 E-value=93 Score=16.22 Aligned_cols=21 Identities=19% Similarity=0.156 Sum_probs=10.3
Q ss_pred ChHHhhHHhccCccchhhhhHh
Q psy12271 66 GYRRDTEKVREKGEEEEEEEEE 87 (95)
Q Consensus 66 gw~~~~~~~~~~p~~~~~~~~~ 87 (95)
-|+.. ..++|+.|-++.+++.
T Consensus 31 iwk~~-~~i~DrrE~~kFEkE~ 51 (79)
T 2knc_B 31 IWKLL-ITIHDRKEFAKFEEER 51 (79)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHHHHHHH
Confidence 36654 3445555555544433
No 18
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=20.16 E-value=51 Score=16.09 Aligned_cols=6 Identities=0% Similarity=-0.064 Sum_probs=3.1
Q ss_pred hHHhhH
Q psy12271 67 YRRDTE 72 (95)
Q Consensus 67 w~~~~~ 72 (95)
|+--|+
T Consensus 34 wK~GFF 39 (54)
T 2knc_A 34 WKVGFF 39 (54)
T ss_dssp HHHHHT
T ss_pred HHcCcc
Confidence 555554
Done!