RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12271
(95 letters)
>gnl|CDD|233173 TIGR00892, 2A0113, monocarboxylate transporter 1. [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 455
Score = 60.5 bits (147), Expect = 2e-12
Identities = 23/62 (37%), Positives = 37/62 (59%)
Query: 7 FSYGVFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLLESYG 66
+ G G+G +F P + ++ YF + R LANG+A++GS + L P +YL ES+G
Sbjct: 112 LTAGFITGLGLAFNFQPSLTMLGKYFYRRRPLANGLAMAGSPVFLSTLAPLNQYLFESFG 171
Query: 67 YR 68
+R
Sbjct: 172 WR 173
>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily.
Length = 346
Score = 49.3 bits (118), Expect = 2e-08
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 10 GVFVGIGAGLSFPPGIFIVTSYF-LKYRGLANGIAISGSALGSIFLPPFLRYLLESYGYR 68
V G+G G FP ++ +F + RG A G+ +G LG+ P L +G+R
Sbjct: 92 RVLQGLGGGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGGLLASLFGWR 151
Score = 35.1 bits (81), Expect = 0.002
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 2 SSHFAFSYGVFVGIGAGLSFPPGIFIVTSYFLK-YRGLANGIAISGSALGSIFLP 55
SS + + +G GAGL FP +V+ K RG A+G+ + +LG P
Sbjct: 292 SSLWLLVALLLLGFGAGLVFPALNALVSDLAPKEERGTASGLYNTAGSLGGALGP 346
Score = 25.5 bits (56), Expect = 5.3
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 41 GIAISGSALGSIFLPPFLRYLLESYGYRR 69
G+ ++ +LG P L + +G RR
Sbjct: 35 GLLLTAFSLGYALAQPLAGRLSDRFGRRR 63
>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that
includes uniporters, symporters, and antiporters. MFS
proteins facilitate the transport across cytoplasmic or
internal membranes of a variety of substrates including
ions, sugar phosphates, drugs, neurotransmitters,
nucleosides, amino acids, and peptides. They do so using
the electrochemical potential of the transported
substrates. Uniporters transport a single substrate,
while symporters and antiporters transport two
substrates in the same or in opposite directions,
respectively, across membranes. MFS proteins are
typically 400 to 600 amino acids in length, and the
majority contain 12 transmembrane alpha helices (TMs)
connected by hydrophilic loops. The N- and C-terminal
halves of these proteins display weak similarity and may
be the result of a gene duplication/fusion event. Based
on kinetic studies and the structures of a few bacterial
superfamily members, GlpT (glycerol-3-phosphate
transporter), LacY (lactose permease), and EmrD
(multidrug transporter), MFS proteins are thought to
function through a single substrate binding site,
alternating-access mechanism involving a rocker-switch
type of movement. Bacterial members function primarily
for nutrient uptake, and as drug-efflux pumps to confer
antibiotic resistance. Some MFS proteins have medical
significance in humans such as the glucose transporter
Glut4, which is impaired in type II diabetes, and
glucose-6-phosphate transporter (G6PT), which causes
glycogen storage disease when mutated.
Length = 352
Score = 47.7 bits (114), Expect = 7e-08
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 7 FSYGVFVGIGAGLSFPPGIFIVTSYF-LKYRGLANGIAISGSALGSIFLPPFLRYLLESY 65
+G+G G +P ++ +F K RG A G+ +G LG++ P L ES
Sbjct: 91 LVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESL 150
Query: 66 GYR 68
G+R
Sbjct: 151 GWR 153
Score = 42.7 bits (101), Expect = 5e-06
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 11 VFVGIGAGLSFPPG-IFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLLESYGYR 68
+ +G G G +FP + RG A+G+ + +LG P LL++ GY
Sbjct: 273 LLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYG 331
Score = 25.7 bits (57), Expect = 3.5
Identities = 15/59 (25%), Positives = 21/59 (35%), Gaps = 1/59 (1%)
Query: 5 FAFS-YGVFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLL 62
A + G+GA L G + S ++ L I AL +FL L L
Sbjct: 123 RALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLLRLLLLLA 181
>gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter. [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 399
Score = 39.6 bits (93), Expect = 5e-05
Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 7/71 (9%)
Query: 5 FAFSYGVF------VGIGAGLSFPPGIFIVTSYF-LKYRGLANGIAISGSALGSIFLPPF 57
FA +Y +G FP I IV S+F R A I S LG I P
Sbjct: 78 FAGAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPL 137
Query: 58 LRYLLESYGYR 68
+ ++L + ++
Sbjct: 138 VGWILIHFSWQ 148
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 1096
Score = 38.8 bits (90), Expect = 1e-04
Identities = 18/26 (69%), Positives = 23/26 (88%)
Query: 70 DTEKVREKGEEEEEEEEEEKEEEEEK 95
D+E+ E+ EEEEEEEEEE+EEEEE+
Sbjct: 862 DSEEEEEEEEEEEEEEEEEEEEEEEE 887
Score = 38.1 bits (88), Expect = 2e-04
Identities = 18/29 (62%), Positives = 22/29 (75%)
Query: 66 GYRRDTEKVREKGEEEEEEEEEEKEEEEE 94
G + E+ E+ EEEEEEEEEE+EEEEE
Sbjct: 861 GDSEEEEEEEEEEEEEEEEEEEEEEEEEE 889
Score = 36.5 bits (84), Expect = 8e-04
Identities = 19/33 (57%), Positives = 24/33 (72%)
Query: 63 ESYGYRRDTEKVREKGEEEEEEEEEEKEEEEEK 95
S G + E+ E+ EEEEEEEEEE+EEEEE+
Sbjct: 857 GSDGGDSEEEEEEEEEEEEEEEEEEEEEEEEEE 889
Score = 35.7 bits (82), Expect = 0.002
Identities = 16/25 (64%), Positives = 20/25 (80%)
Query: 70 DTEKVREKGEEEEEEEEEEKEEEEE 94
+ E+ E+ EEEEEEEEEE+EE EE
Sbjct: 868 EEEEEEEEEEEEEEEEEEEEEENEE 892
Score = 35.4 bits (81), Expect = 0.002
Identities = 16/24 (66%), Positives = 20/24 (83%)
Query: 72 EKVREKGEEEEEEEEEEKEEEEEK 95
E+ E+ EEEEEEEEEE+EEEE +
Sbjct: 868 EEEEEEEEEEEEEEEEEEEEEENE 891
Score = 35.4 bits (81), Expect = 0.002
Identities = 16/24 (66%), Positives = 20/24 (83%)
Query: 72 EKVREKGEEEEEEEEEEKEEEEEK 95
E+ E+ EEEEEEEEEE+EEE E+
Sbjct: 869 EEEEEEEEEEEEEEEEEEEEENEE 892
Score = 33.0 bits (75), Expect = 0.013
Identities = 15/26 (57%), Positives = 19/26 (73%)
Query: 70 DTEKVREKGEEEEEEEEEEKEEEEEK 95
D + G+ EEEEEEEE+EEEEE+
Sbjct: 853 DGGGGSDGGDSEEEEEEEEEEEEEEE 878
>gnl|CDD|233171 TIGR00890, 2A0111, oxalate/formate antiporter family transporter.
This subfamily belongs to the major facilitator family.
Members include the oxalate/formate antiporter of
Oxalobacter formigenes, where one substrate is
decarboxylated in the cytosol into the other to consume
a proton and drive an ion gradient [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 377
Score = 37.8 bits (88), Expect = 3e-04
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 8 SYGVFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLLESYGY 67
+YG G G+++ + +F RGLA+GI I G LGS L P + ++ G
Sbjct: 97 TYG-LASAGVGIAYGIALNTAVKWFPDKRGLASGIIIGGYGLGSFILSPLITSVINLEGV 155
Query: 68 R 68
Sbjct: 156 P 156
>gnl|CDD|219900 pfam08553, VID27, VID27 cytoplasmic protein. This is a family of
fungal and plant proteins and contains many hypothetical
proteins. VID27 is a cytoplasmic protein that plays a
potential role in vacuolar protein degradation.
Length = 794
Score = 33.6 bits (77), Expect = 0.008
Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Query: 60 YLLESYG--YRRDTEKVREKGEEEEEEEEEEKEEEEE 94
Y+L+++ D R+ EEE+EEEEEE++E+E
Sbjct: 371 YILDAFSALEIEDANTERDDEEEEDEEEEEEEDEDEG 407
>gnl|CDD|179712 PRK04019, rplP0, acidic ribosomal protein P0; Validated.
Length = 330
Score = 32.9 bits (76), Expect = 0.011
Identities = 14/18 (77%), Positives = 15/18 (83%)
Query: 76 EKGEEEEEEEEEEKEEEE 93
E+ EEEEEEEEEE EEE
Sbjct: 303 EEEEEEEEEEEEEPSEEE 320
Score = 32.5 bits (75), Expect = 0.018
Identities = 14/23 (60%), Positives = 16/23 (69%)
Query: 72 EKVREKGEEEEEEEEEEKEEEEE 94
E+ EEEEEEEEEE+ EEE
Sbjct: 298 AAAAEEEEEEEEEEEEEEPSEEE 320
Score = 30.6 bits (70), Expect = 0.086
Identities = 13/22 (59%), Positives = 14/22 (63%)
Query: 71 TEKVREKGEEEEEEEEEEKEEE 92
E+ EEEEEEEEE EEE
Sbjct: 299 AAAEEEEEEEEEEEEEEPSEEE 320
Score = 29.8 bits (68), Expect = 0.14
Identities = 13/17 (76%), Positives = 14/17 (82%)
Query: 79 EEEEEEEEEEKEEEEEK 95
EEEEEEEE+EEEEE
Sbjct: 300 AAEEEEEEEEEEEEEEP 316
Score = 29.4 bits (67), Expect = 0.17
Identities = 13/20 (65%), Positives = 14/20 (70%)
Query: 76 EKGEEEEEEEEEEKEEEEEK 95
EEEEEEEEE+EEEE
Sbjct: 298 AAAAEEEEEEEEEEEEEEPS 317
Score = 26.8 bits (60), Expect = 1.5
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 72 EKVREKGEEEEEEEEEEKEEEEEK 95
E + + + EEEEE+EEEEE+
Sbjct: 290 EVLSAQAQAAAAEEEEEEEEEEEE 313
>gnl|CDD|225133 COG2223, NarK, Nitrate/nitrite transporter [Inorganic ion transport
and metabolism].
Length = 417
Score = 32.6 bits (75), Expect = 0.014
Identities = 18/57 (31%), Positives = 23/57 (40%), Gaps = 4/57 (7%)
Query: 10 GVFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLLESYG 66
VF G+G G F ++ F K G GI + LG FLP L+ G
Sbjct: 325 FVFAGLGNGSVFK----MIPVIFPKETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTG 377
Score = 29.2 bits (66), Expect = 0.26
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Query: 1 MSSHFAFSYGVFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFLP 55
+S + ++G FVG A L +++VT + L A IA +G++ P
Sbjct: 223 LSLLYFATFGGFVGFSAYL----PMYLVTQFGLSPV-TAGLIAFLFPLIGALARP 272
>gnl|CDD|185603 PTZ00415, PTZ00415, transmission-blocking target antigen s230;
Provisional.
Length = 2849
Score = 32.7 bits (74), Expect = 0.017
Identities = 12/36 (33%), Positives = 24/36 (66%)
Query: 59 RYLLESYGYRRDTEKVREKGEEEEEEEEEEKEEEEE 94
R+L E RD + + E+E+E++++E+++EEE
Sbjct: 138 RHLAEEDMSPRDNFVIDDDDEDEDEDDDDEEDDEEE 173
Score = 30.0 bits (67), Expect = 0.13
Identities = 11/26 (42%), Positives = 20/26 (76%)
Query: 70 DTEKVREKGEEEEEEEEEEKEEEEEK 95
D + E ++++EE++EE+EEEEE+
Sbjct: 154 DDDDEDEDEDDDDEEDDEEEEEEEEE 179
Score = 28.9 bits (64), Expect = 0.43
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 70 DTEKVREKGEEEEEEEEEEKEEEEEK 95
D E E ++EE++EEEE+EEEE K
Sbjct: 156 DDEDEDEDDDDEEDDEEEEEEEEEIK 181
>gnl|CDD|218312 pfam04889, Cwf_Cwc_15, Cwf15/Cwc15 cell cycle control protein.
This family represents Cwf15/Cwc15 (from
Schizosaccharomyces pombe and Saccharomyces cerevisiae
respectively) and their homologues. The function of
these proteins is unknown, but they form part of the
spliceosome and are thus thought to be involved in mRNA
splicing.
Length = 241
Score = 32.0 bits (73), Expect = 0.023
Identities = 15/27 (55%), Positives = 21/27 (77%)
Query: 69 RDTEKVREKGEEEEEEEEEEKEEEEEK 95
R+ EK++++ EE+E EEEEK EEEK
Sbjct: 149 RELEKIKKERAEEKEREEEEKAAEEEK 175
Score = 26.2 bits (58), Expect = 2.3
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 72 EKVREKGEEEEEEEEEEKEEEEEK 95
E+ EK EEEE+ EE++ EE+
Sbjct: 157 ERAEEKEREEEEKAAEEEKAREEE 180
>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein.
Length = 141
Score = 31.5 bits (72), Expect = 0.026
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 11 VFVGIGAGLSFPPG-IFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLLESYGYR 68
G GA + G I Y + RG+A G+ +G ALG + PP L + G+R
Sbjct: 59 FLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWR 117
Score = 25.3 bits (56), Expect = 5.0
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 41 GIAISGSALGSIFLPPFLRYLLESYGYR 68
G+ ++G ALG + P L + +G +
Sbjct: 1 GLLLAGYALGQLIYSPLSGLLTDRFGRK 28
>gnl|CDD|223769 COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT)
superfamily [Carbohydrate transport and metabolism /
Amino acid transport and metabolism / General function
prediction only].
Length = 292
Score = 31.8 bits (72), Expect = 0.030
Identities = 6/58 (10%), Positives = 16/58 (27%), Gaps = 1/58 (1%)
Query: 1 MSSHFAFSYGVFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFLPPFL 58
G+ + + A L + + + + + + + L FL
Sbjct: 146 GGGGILSLLGLLLALAAALLW-ALYTALVKRLSRLGPVTLALLLQLLLALLLLLLFFL 202
>gnl|CDD|234311 TIGR03685, L12P_arch, 50S ribosomal protein L12P. This model
represents the L12P protein of the large (50S) subunit
of the archaeal ribosome.
Length = 105
Score = 30.8 bits (70), Expect = 0.041
Identities = 15/23 (65%), Positives = 17/23 (73%)
Query: 72 EKVREKGEEEEEEEEEEKEEEEE 94
E+ EEEEEEEEEE+E EEE
Sbjct: 73 AAAEEEEEEEEEEEEEEEESEEE 95
Score = 28.5 bits (64), Expect = 0.31
Identities = 12/18 (66%), Positives = 14/18 (77%)
Query: 78 GEEEEEEEEEEKEEEEEK 95
EEEEEEE+EEEEE+
Sbjct: 72 AAAAEEEEEEEEEEEEEE 89
Score = 27.7 bits (62), Expect = 0.52
Identities = 14/20 (70%), Positives = 16/20 (80%)
Query: 76 EKGEEEEEEEEEEKEEEEEK 95
EEEEEEEEE+EEEEE+
Sbjct: 72 AAAAEEEEEEEEEEEEEEEE 91
Score = 26.5 bits (59), Expect = 1.3
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 78 GEEEEEEEEEEKEEEEEK 95
EEEEEE+EEEEE+
Sbjct: 71 AAAAAEEEEEEEEEEEEE 88
Score = 26.5 bits (59), Expect = 1.4
Identities = 15/20 (75%), Positives = 16/20 (80%)
Query: 76 EKGEEEEEEEEEEKEEEEEK 95
EEEEEEEEEE+EEEEE
Sbjct: 73 AAAEEEEEEEEEEEEEEEES 92
>gnl|CDD|235795 PRK06402, rpl12p, 50S ribosomal protein L12P; Reviewed.
Length = 106
Score = 30.7 bits (70), Expect = 0.042
Identities = 14/18 (77%), Positives = 16/18 (88%)
Query: 76 EKGEEEEEEEEEEKEEEE 93
EK EEEEEEEE+E+ EEE
Sbjct: 79 EKKEEEEEEEEKEESEEE 96
Score = 30.3 bits (69), Expect = 0.052
Identities = 13/19 (68%), Positives = 17/19 (89%)
Query: 76 EKGEEEEEEEEEEKEEEEE 94
E+ +EEEEEEEE++E EEE
Sbjct: 78 EEKKEEEEEEEEKEESEEE 96
Score = 29.9 bits (68), Expect = 0.087
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 76 EKGEEEEEEEEEEKEEEEE 94
E++EEEEEEE++EE E
Sbjct: 76 AAEEKKEEEEEEEEKEESE 94
Score = 29.2 bits (66), Expect = 0.15
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 76 EKGEEEEEEEEEEKEEEEE 94
EE++EEEEEE+E+EE
Sbjct: 75 AAAEEKKEEEEEEEEKEES 93
Score = 28.8 bits (65), Expect = 0.19
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 76 EKGEEEEEEEEEEKEEEEEK 95
EE++EEEEE+EE+EE
Sbjct: 74 AAAAEEKKEEEEEEEEKEES 93
Score = 28.0 bits (63), Expect = 0.41
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 76 EKGEEEEEEEEEEKEEEEEK 95
EE++EEEE+EEE+E+
Sbjct: 73 AAAAAEEKKEEEEEEEEKEE 92
Score = 25.7 bits (57), Expect = 3.0
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 78 GEEEEEEEEEEKEEEEEK 95
EE++E+EEEEE+
Sbjct: 72 AAAAAAEEKKEEEEEEEE 89
Score = 24.5 bits (54), Expect = 8.4
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 76 EKGEEEEEEEEEEKEEEEE 94
++ EEEEEE+EE +EE
Sbjct: 81 KEEEEEEEEKEESEEEAAA 99
Score = 24.1 bits (53), Expect = 9.2
Identities = 11/17 (64%), Positives = 13/17 (76%)
Query: 72 EKVREKGEEEEEEEEEE 88
EK E+ EEEE+EE EE
Sbjct: 79 EKKEEEEEEEEKEESEE 95
>gnl|CDD|217049 pfam02459, Adeno_terminal, Adenoviral DNA terminal protein. This
protein is covalently attached to the terminii of
replicating DNA in vivo.
Length = 548
Score = 31.2 bits (71), Expect = 0.051
Identities = 16/27 (59%), Positives = 17/27 (62%)
Query: 68 RRDTEKVREKGEEEEEEEEEEKEEEEE 94
RR E EEEEEEEE +EEEEE
Sbjct: 296 RRPPPSPPEPEEEEEEEEEVPEEEEEE 322
Score = 30.0 bits (68), Expect = 0.15
Identities = 14/19 (73%), Positives = 16/19 (84%)
Query: 76 EKGEEEEEEEEEEKEEEEE 94
E+ EEEEE EEE+EEEEE
Sbjct: 307 EEEEEEEEVPEEEEEEEEE 325
Score = 29.2 bits (66), Expect = 0.28
Identities = 14/19 (73%), Positives = 16/19 (84%)
Query: 76 EKGEEEEEEEEEEKEEEEE 94
E+ EEE EEEEE+EEEEE
Sbjct: 309 EEEEEEVPEEEEEEEEEEE 327
Score = 27.3 bits (61), Expect = 1.2
Identities = 14/19 (73%), Positives = 16/19 (84%)
Query: 76 EKGEEEEEEEEEEKEEEEE 94
E+ EEEE EEEE+EEEEE
Sbjct: 308 EEEEEEEVPEEEEEEEEEE 326
Score = 26.5 bits (59), Expect = 2.4
Identities = 15/27 (55%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
Query: 70 DTEKVREKGEEEEEEEEEEKEE--EEE 94
+ E+ E+ EEEEEEEEE+E EEE
Sbjct: 307 EEEEEEEEVPEEEEEEEEEEERTFEEE 333
Score = 25.8 bits (57), Expect = 3.8
Identities = 14/27 (51%), Positives = 15/27 (55%)
Query: 68 RRDTEKVREKGEEEEEEEEEEKEEEEE 94
RR E EEEEEEEE+ EEE
Sbjct: 293 RRRRRPPPSPPEPEEEEEEEEEVPEEE 319
>gnl|CDD|100110 cd05832, Ribosomal_L12p, Ribosomal protein L12p. This subfamily
includes archaeal L12p, the protein that is
functionally equivalent to L7/L12 in bacteria and the
P1 and P2 proteins in eukaryotes. L12p is homologous to
P1 and P2 but is not homologous to bacterial L7/L12. It
is located in the L12 stalk, with proteins L10, L11,
and 23S rRNA. L12p is the only protein in the ribosome
to occur as multimers, always appearing as sets of
dimers. Recent data indicate that most archaeal species
contain six copies of L12p (three homodimers), while
eukaryotes have four copies (two heterodimers), and
bacteria may have four or six copies (two or three
homodimers), depending on the species. The organization
of proteins within the stalk has been characterized
primarily in bacteria, where L7/L12 forms either two or
three homodimers and each homodimer binds to the
extended C-terminal helix of L10. L7/L12 is attached to
the ribosome through L10 and is the only ribosomal
protein that does not directly interact with rRNA.
Archaeal L12p is believed to function in a similar
fashion. However, hybrid ribosomes containing the large
subunit from E. coli with an archaeal stalk are able to
bind archaeal and eukaryotic elongation factors but not
bacterial elongation factors. In several mesophilic and
thermophilic archaeal species, the binding of 23S rRNA
to protein L11 and to the L10/L12p pentameric complex
was found to be temperature-dependent and cooperative.
Length = 106
Score = 30.2 bits (68), Expect = 0.058
Identities = 14/22 (63%), Positives = 19/22 (86%)
Query: 72 EKVREKGEEEEEEEEEEKEEEE 93
EK EK EE+++EEE+E+EEEE
Sbjct: 76 EKAEEKEEEKKKEEEKEEEEEE 97
Score = 29.8 bits (67), Expect = 0.097
Identities = 13/24 (54%), Positives = 20/24 (83%)
Query: 71 TEKVREKGEEEEEEEEEEKEEEEE 94
E+ E+ EEE+++EEE++EEEEE
Sbjct: 74 AEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 27.5 bits (61), Expect = 0.59
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 72 EKVREKGEEEEEEEEEEKEEEEE 94
+ E+EEE+++EE++EEEE
Sbjct: 73 AAEEKAEEKEEEKKKEEEKEEEE 95
Score = 26.7 bits (59), Expect = 1.2
Identities = 12/20 (60%), Positives = 16/20 (80%)
Query: 76 EKGEEEEEEEEEEKEEEEEK 95
EE+ EE+EEEK++EEEK
Sbjct: 72 AAAEEKAEEKEEEKKKEEEK 91
Score = 26.7 bits (59), Expect = 1.4
Identities = 10/20 (50%), Positives = 16/20 (80%)
Query: 76 EKGEEEEEEEEEEKEEEEEK 95
E+ EE+EEE+K+EEE++
Sbjct: 73 AAEEKAEEKEEEKKKEEEKE 92
Score = 26.3 bits (58), Expect = 1.5
Identities = 10/20 (50%), Positives = 17/20 (85%)
Query: 76 EKGEEEEEEEEEEKEEEEEK 95
+ + EE+EEE++KEEE+E+
Sbjct: 74 AEEKAEEKEEEKKKEEEKEE 93
>gnl|CDD|218223 pfam04712, Radial_spoke, Radial spokehead-like protein. This
family includes the radial spoke head proteins RSP4 and
RSP6 from Chlamydomonas reinhardtii, and several
eukaryotic homologues, including mammalian RSHL1, the
protein product of a familial ciliary dyskinesia
candidate gene.
Length = 481
Score = 31.2 bits (71), Expect = 0.058
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 70 DTEKVREKGEEEEEEEEEEKEEEEEK 95
+K E+ +E+EEEEEEE+E EE +
Sbjct: 344 PEQKDEEEEQEDEEEEEEEEEPEEPE 369
Score = 30.8 bits (70), Expect = 0.070
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 70 DTEKVREKGEEEEEEEEEEKEEEEEK 95
E+ ++ EEEEEEEEE +E E E+
Sbjct: 347 KDEEEEQEDEEEEEEEEEPEEPEPEE 372
Score = 30.4 bits (69), Expect = 0.089
Identities = 14/25 (56%), Positives = 20/25 (80%)
Query: 70 DTEKVREKGEEEEEEEEEEKEEEEE 94
+ E+ E+ E+E+EEEEEE+EE EE
Sbjct: 343 NPEQKDEEEEQEDEEEEEEEEEPEE 367
Score = 27.7 bits (62), Expect = 0.91
Identities = 12/25 (48%), Positives = 19/25 (76%)
Query: 71 TEKVREKGEEEEEEEEEEKEEEEEK 95
V + ++EEEE+E+E+EEEEE+
Sbjct: 339 CTWVNPEQKDEEEEQEDEEEEEEEE 363
Score = 25.8 bits (57), Expect = 3.8
Identities = 11/20 (55%), Positives = 16/20 (80%)
Query: 76 EKGEEEEEEEEEEKEEEEEK 95
+GEEEEEEEE + +EE++
Sbjct: 168 REGEEEEEEEEVGEADEEDE 187
Score = 25.8 bits (57), Expect = 4.2
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 76 EKGEEEEEEEEEEKEEEE 93
E+ EEEEEE EE + EE
Sbjct: 356 EEEEEEEEEPEEPEPEEG 373
Score = 25.8 bits (57), Expect = 4.6
Identities = 12/16 (75%), Positives = 12/16 (75%)
Query: 79 EEEEEEEEEEKEEEEE 94
EEEEEEE EE E EE
Sbjct: 358 EEEEEEEPEEPEPEEG 373
Score = 25.4 bits (56), Expect = 5.0
Identities = 11/19 (57%), Positives = 12/19 (63%)
Query: 76 EKGEEEEEEEEEEKEEEEE 94
E+ EEEEE EE E EE
Sbjct: 357 EEEEEEEEPEEPEPEEGPP 375
>gnl|CDD|235302 PRK04456, PRK04456, acetyl-CoA decarbonylase/synthase complex
subunit beta; Reviewed.
Length = 463
Score = 30.8 bits (70), Expect = 0.062
Identities = 14/17 (82%), Positives = 15/17 (88%)
Query: 78 GEEEEEEEEEEKEEEEE 94
EEEEEEEEE+EEEEE
Sbjct: 403 AAEEEEEEEEEEEEEEE 419
Score = 30.0 bits (68), Expect = 0.14
Identities = 15/21 (71%), Positives = 17/21 (80%)
Query: 74 VREKGEEEEEEEEEEKEEEEE 94
V E+ EEEEEEEE+EEEEE
Sbjct: 398 VVERWAAEEEEEEEEEEEEEE 418
Score = 28.9 bits (65), Expect = 0.33
Identities = 15/20 (75%), Positives = 16/20 (80%)
Query: 75 REKGEEEEEEEEEEKEEEEE 94
R EEEEEEEEEE+EEEE
Sbjct: 401 RWAAEEEEEEEEEEEEEEEP 420
Score = 27.0 bits (60), Expect = 1.5
Identities = 13/16 (81%), Positives = 14/16 (87%)
Query: 79 EEEEEEEEEEKEEEEE 94
EEEEEEEEEE+EEE
Sbjct: 406 EEEEEEEEEEEEEEPV 421
Score = 26.2 bits (58), Expect = 2.7
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 71 TEKVREKGEEEEEEEEEEKEEEEE 94
E+ + EEEEEEEEEE+EE
Sbjct: 399 VERWAAEEEEEEEEEEEEEEEPVA 422
Score = 25.4 bits (56), Expect = 5.6
Identities = 13/19 (68%), Positives = 15/19 (78%)
Query: 76 EKGEEEEEEEEEEKEEEEE 94
E+ EEEEEEEEEE+E E
Sbjct: 405 EEEEEEEEEEEEEEEPVAE 423
>gnl|CDD|237799 PRK14715, PRK14715, DNA polymerase II large subunit; Provisional.
Length = 1627
Score = 30.6 bits (69), Expect = 0.078
Identities = 14/24 (58%), Positives = 17/24 (70%)
Query: 72 EKVREKGEEEEEEEEEEKEEEEEK 95
EK EK EE + EE +E+ EEEEK
Sbjct: 285 EKDEEKSEEVKTEEVDEEFEEEEK 308
Score = 26.3 bits (58), Expect = 2.8
Identities = 12/45 (26%), Positives = 28/45 (62%), Gaps = 4/45 (8%)
Query: 55 PPFLRYL----LESYGYRRDTEKVREKGEEEEEEEEEEKEEEEEK 95
P LR++ +E + + ++ ++ +E+ +EE+ EE + +E +EE
Sbjct: 259 PKILRHVDKLGIEGWDWLKELKEKKEEKDEEKSEEVKTEEVDEEF 303
Score = 25.6 bits (56), Expect = 5.3
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 62 LESYGYRRDTEKVREKGEEEEEEEEEEKEEEE 93
L+ +D EK E EE +EE EE+E+
Sbjct: 279 LKEKKEEKDEEKSEEVKTEEVDEEFEEEEKGF 310
Score = 25.6 bits (56), Expect = 5.5
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 68 RRDTEKVREKGEEEEEEEEEEKEEEEE 94
E+ E+ + EE +EE E+EE+
Sbjct: 284 EEKDEEKSEEVKTEEVDEEFEEEEKGF 310
>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport
and metabolism].
Length = 394
Score = 30.7 bits (70), Expect = 0.085
Identities = 16/71 (22%), Positives = 28/71 (39%), Gaps = 7/71 (9%)
Query: 5 FAFSYGVFVGIGAGLSFPPGIFIVTSYFL-------KYRGLANGIAISGSALGSIFLPPF 57
A S+ V + A G+F + L RG A + +G L ++ P
Sbjct: 97 LAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPL 156
Query: 58 LRYLLESYGYR 68
+L + +G+R
Sbjct: 157 GTFLGQLFGWR 167
>gnl|CDD|151656 pfam11214, Med2, Mediator complex subunit 2. This family of
mediator complex subunit 2 proteins is conserved in
fungi. Cyclin-dependent kinase CDK8 or Srb10 interacts
with and phosphorylates Med2. Post-translational
modifications of Mediator subunits are important for
regulation of gene expression.
Length = 99
Score = 29.3 bits (66), Expect = 0.11
Identities = 11/24 (45%), Positives = 19/24 (79%)
Query: 72 EKVREKGEEEEEEEEEEKEEEEEK 95
+ + E +++EEEE ++KEEEE+K
Sbjct: 76 DTLVENKKKQEEEERKKKEEEEKK 99
>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit;
Provisional.
Length = 482
Score = 30.3 bits (69), Expect = 0.12
Identities = 13/28 (46%), Positives = 23/28 (82%)
Query: 68 RRDTEKVREKGEEEEEEEEEEKEEEEEK 95
+++ +K G+++EEEEEEEKE++EE+
Sbjct: 427 KKEKKKKAFAGKKKEEEEEEEKEKKEEE 454
Score = 28.0 bits (63), Expect = 0.60
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 68 RRDTEKVREKGEEEEEEEEEEKEEEEEK 95
+ +K ++EEEEEEE++++EEEK
Sbjct: 428 KEKKKKAFAGKKKEEEEEEEKEKKEEEK 455
Score = 27.6 bits (62), Expect = 0.91
Identities = 14/28 (50%), Positives = 21/28 (75%)
Query: 68 RRDTEKVREKGEEEEEEEEEEKEEEEEK 95
+ E+ +K EE+EEEEEE +EE+EE+
Sbjct: 442 EEEEEEKEKKEEEKEEEEEEAEEEKEEE 469
Score = 27.6 bits (62), Expect = 0.95
Identities = 13/30 (43%), Positives = 22/30 (73%)
Query: 66 GYRRDTEKVREKGEEEEEEEEEEKEEEEEK 95
+ K +E+ EEEE+E++EE++EEEE+
Sbjct: 431 KKKAFAGKKKEEEEEEEKEKKEEEKEEEEE 460
Score = 27.6 bits (62), Expect = 0.99
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 63 ESYGYRRDTEKVREKGEEEEEEEEEEKEEEEEK 95
+ +K E+ EE+E++EEE++EEEEE
Sbjct: 430 KKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEA 462
Score = 27.2 bits (61), Expect = 1.3
Identities = 10/28 (35%), Positives = 20/28 (71%)
Query: 68 RRDTEKVREKGEEEEEEEEEEKEEEEEK 95
++ E+ +EK ++ +++E+EEEEEK
Sbjct: 421 KKREEEKKEKKKKAFAGKKKEEEEEEEK 448
Score = 27.2 bits (61), Expect = 1.4
Identities = 11/28 (39%), Positives = 20/28 (71%)
Query: 68 RRDTEKVREKGEEEEEEEEEEKEEEEEK 95
R + +K ++K +++EEE+EEE+EK
Sbjct: 423 REEEKKEKKKKAFAGKKKEEEEEEEKEK 450
Score = 26.4 bits (59), Expect = 2.1
Identities = 19/26 (73%), Positives = 21/26 (80%)
Query: 70 DTEKVREKGEEEEEEEEEEKEEEEEK 95
+ EK E+ EEEEEE EEEKEEEEEK
Sbjct: 447 EKEKKEEEKEEEEEEAEEEKEEEEEK 472
Score = 26.4 bits (59), Expect = 2.2
Identities = 15/28 (53%), Positives = 23/28 (82%)
Query: 68 RRDTEKVREKGEEEEEEEEEEKEEEEEK 95
+++ E+ EK ++EEE+EEEE+E EEEK
Sbjct: 439 KKEEEEEEEKEKKEEEKEEEEEEAEEEK 466
Score = 26.4 bits (59), Expect = 2.3
Identities = 16/26 (61%), Positives = 20/26 (76%)
Query: 70 DTEKVREKGEEEEEEEEEEKEEEEEK 95
+K EK EEEEE EEE++EEEE+K
Sbjct: 448 KEKKEEEKEEEEEEAEEEKEEEEEKK 473
Score = 25.3 bits (56), Expect = 6.6
Identities = 12/28 (42%), Positives = 22/28 (78%)
Query: 68 RRDTEKVREKGEEEEEEEEEEKEEEEEK 95
+ + E+ ++ +EEE+EEEEE+ EEE++
Sbjct: 440 KEEEEEEEKEKKEEEKEEEEEEAEEEKE 467
Score = 24.9 bits (55), Expect = 9.0
Identities = 9/28 (32%), Positives = 20/28 (71%)
Query: 68 RRDTEKVREKGEEEEEEEEEEKEEEEEK 95
+ +K + +++EEEEEE++E++E+
Sbjct: 426 EKKEKKKKAFAGKKKEEEEEEEKEKKEE 453
>gnl|CDD|220304 pfam09594, DUF2029, Protein of unknown function (DUF2029). This is
a putative transmembrane protein from bacteria. It is
likely to be conserved between Mycobacterium species.
Length = 240
Score = 29.9 bits (68), Expect = 0.12
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 12/67 (17%)
Query: 10 GVFVGIGAGLSFPPGIFIVTSYFL---KYRGLANGIAISG--SALGSIFLPP-----FLR 59
GV +G+ A + P +F++ Y L ++R LA A + AL + L P FLR
Sbjct: 100 GVLIGLAAAIKLTPALFLL--YLLLRRRWRALAAAAATAAALVALSLLVLGPSSWRYFLR 157
Query: 60 YLLESYG 66
L ++
Sbjct: 158 TLPDASE 164
>gnl|CDD|182633 PRK10669, PRK10669, putative cation:proton antiport protein;
Provisional.
Length = 558
Score = 30.1 bits (68), Expect = 0.13
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 48 ALGSIFLPPFLRYLLESYGYRRDTEKVREKGEEEEEEEEEE 88
A+ SI L P L LLE Y + TE + E+ EE EEE++
Sbjct: 373 AILSIMLNPVLFTLLERYLAK--TETLEEQTLEEAIEEEKQ 411
>gnl|CDD|218115 pfam04502, DUF572, Family of unknown function (DUF572). Family of
eukaryotic proteins with undetermined function.
Length = 321
Score = 30.1 bits (68), Expect = 0.14
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 59 RYLLESYGYRRDTEKVREKGEEEEEEEEEEKEEEE 93
Y++ES G R+ E + E+EE E+E +EE
Sbjct: 97 DYVVES-GATRNYEADKLDEEQEERVEKEREEELA 130
Score = 26.2 bits (58), Expect = 2.8
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 72 EKVREKGEEEEEEEEEEKEEEEEK 95
E + + ++EEEEEEEE E +
Sbjct: 174 EALFRREKKEEEEEEEEDEALIKS 197
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein
TolA; Provisional.
Length = 387
Score = 29.8 bits (67), Expect = 0.14
Identities = 8/26 (30%), Positives = 18/26 (69%)
Query: 69 RDTEKVREKGEEEEEEEEEEKEEEEE 94
+ E+ R+K E+++ EE ++K+ E+
Sbjct: 75 KRAEEQRKKKEQQQAEELQQKQAAEQ 100
>gnl|CDD|220112 pfam09110, HAND, HAND. The HAND domain adopts a secondary
structure consisting of four alpha helices, three of
which (H2, H3, H4) form an L-like configuration. Helix
H2 runs antiparallel to helices H3 and H4, packing
closely against helix H4, whilst helix H1 reposes in
the concave surface formed by these three helices and
runs perpendicular to them. The domain confers DNA and
nucleosome binding properties to the protein.
Length = 109
Score = 29.2 bits (66), Expect = 0.15
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 8/51 (15%)
Query: 53 FLPPFLRYLLE--------SYGYRRDTEKVREKGEEEEEEEEEEKEEEEEK 95
F PP L+ L E GY+ + V + EE+EEE E +++ E+EK
Sbjct: 37 FFPPRLKELQEKEQLYYKKKIGYKVPLDDVGDGDEEDEEEREAKRKLEQEK 87
>gnl|CDD|216269 pfam01056, Myc_N, Myc amino-terminal region. The myc family
belongs to the basic helix-loop-helix leucine zipper
class of transcription factors, see pfam00010. Myc forms
a heterodimer with Max, and this complex regulates cell
growth through direct activation of genes involved in
cell replication. Mutations in the C-terminal 20
residues of this domain cause unique changes in the
induction of apoptosis, transformation, and G2 arrest.
Length = 329
Score = 29.9 bits (67), Expect = 0.15
Identities = 13/16 (81%), Positives = 15/16 (93%)
Query: 79 EEEEEEEEEEKEEEEE 94
EE+EEEEEE+EEEEE
Sbjct: 228 SEEDEEEEEEEEEEEE 243
Score = 28.7 bits (64), Expect = 0.38
Identities = 13/16 (81%), Positives = 15/16 (93%)
Query: 79 EEEEEEEEEEKEEEEE 94
E EE+EEEEE+EEEEE
Sbjct: 227 ESEEDEEEEEEEEEEE 242
Score = 28.4 bits (63), Expect = 0.53
Identities = 13/17 (76%), Positives = 15/17 (88%)
Query: 76 EKGEEEEEEEEEEKEEE 92
E E+EEEEEEEE+EEE
Sbjct: 227 ESEEDEEEEEEEEEEEE 243
Score = 28.0 bits (62), Expect = 0.62
Identities = 12/19 (63%), Positives = 15/19 (78%)
Query: 70 DTEKVREKGEEEEEEEEEE 88
D+E ++ EEEEEEEEEE
Sbjct: 225 DSESEEDEEEEEEEEEEEE 243
Score = 26.1 bits (57), Expect = 2.8
Identities = 11/17 (64%), Positives = 14/17 (82%)
Query: 78 GEEEEEEEEEEKEEEEE 94
G + E EE+EE+EEEEE
Sbjct: 223 GSDSESEEDEEEEEEEE 239
>gnl|CDD|234525 TIGR04259, oxa_formateAnti, oxalate/formate antiporter. This model
represents a subgroup of the more broadly defined model
TIGR00890, which in turn belongs to the Major
Facilitator transporter family. Seed members for this
family include the known oxalate/formate antiporter of
Oxalobacter formigenes, as well as transporter subunits
co-clustered with the two genes of a system that
decarboxylates oxalate into formate. In many of these
cassettes, two subunits are found rather than one,
suggesting the antiporter is sometimes homodimeric,
sometimes heterodimeric.
Length = 405
Score = 29.7 bits (67), Expect = 0.17
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 14 GIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGS-IFLPPFLRYLLESYGY 67
GIGAG + + +F RGLA G+ +G G+ + + P + +++ GY
Sbjct: 102 GIGAGAVYGTCVGNALKWFPDKRGLAAGLTAAGFGAGAALTVVP-IAAMIKVSGY 155
>gnl|CDD|225803 COG3264, COG3264, Small-conductance mechanosensitive channel [Cell
envelope biogenesis, outer membrane].
Length = 835
Score = 29.7 bits (67), Expect = 0.17
Identities = 17/83 (20%), Positives = 26/83 (31%), Gaps = 8/83 (9%)
Query: 6 AFSYGVFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLLESY 65
V L +T Y LA + ++ + L + ++ LR L S
Sbjct: 424 LLLITVLSAAPLALIVA----ALTGYLYTALFLALRLVVTVAILFTWYVLYILRGLSVSA 479
Query: 66 ---GYRRDTEKVREKGEEEEEEE 85
+ R R EE E E
Sbjct: 480 RRLAFARALAG-RALAEEAELVE 501
>gnl|CDD|153040 pfam12606, RELT, Tumour necrosis factor receptor superfamily
member 19. This family of proteins is found in
bacteria and eukaryotes. Proteins in this family are
typically between 49 and 288 amino acids in length.
There are two completely conserved residues (K and Y)
that may be functionally important. The members of
tumor necrosis factor receptor (TNFR) superfamily have
been designated as the "guardians of the immune system"
due to their roles in immune cell proliferation,
differentiation, activation, and death (apoptosis). The
messenger RNA of RELT is especially abundant in
hematologic tissues such as spleen, lymph node, and
peripheral blood leukocytes as well as in leukemias and
lymphomas. RELT is able to activate the NF-kappaB
pathway and selectively binds tumor necrosis factor
receptor-associated factor 1.
Length = 50
Score = 28.0 bits (63), Expect = 0.17
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 61 LLESYGYRRDTEKVREKGEEEEEEEEEE 88
LL+ GYR + + ++ EE++EEE+EE
Sbjct: 23 LLKKKGYRCTVDPLEDEPEEKKEEEKEE 50
>gnl|CDD|217476 pfam03286, Pox_Ag35, Pox virus Ag35 surface protein.
Length = 198
Score = 29.7 bits (67), Expect = 0.17
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 69 RDTEKVREKGEEEEEEEEEEKEEEEEK 95
+ +K +EK EEE++ E + ++ EE
Sbjct: 67 KSKKKDKEKLTEEEKKPESDDDKTEEN 93
Score = 29.3 bits (66), Expect = 0.21
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 72 EKVREKGEEEEEEEEEEKEEEEEK 95
+K + EE++ E +++K EE E
Sbjct: 72 DKEKLTEEEKKPESDDDKTEENEN 95
Score = 26.3 bits (58), Expect = 2.5
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 68 RRDTEKVREKGEEEEEEEEEEKEEEEE 94
+ T K +K ++E+ EEE+K E ++
Sbjct: 61 KPATTKKSKKKDKEKLTEEEKKPESDD 87
>gnl|CDD|215914 pfam00428, Ribosomal_60s, 60s Acidic ribosomal protein. This
family includes archaebacterial L12, eukaryotic P0, P1
and P2.
Length = 88
Score = 28.7 bits (65), Expect = 0.19
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 76 EKGEEEEEEEEEEKEEEEE 94
EEE++EEEE+EEE++
Sbjct: 63 AAAAEEEKKEEEEEEEEDD 81
Score = 27.6 bits (62), Expect = 0.45
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 76 EKGEEEEEEEEEEKEEEEE 94
EEE++EE+EEEEE
Sbjct: 61 AAAAAAEEEKKEEEEEEEE 79
Score = 25.7 bits (57), Expect = 2.0
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 76 EKGEEEEEEEEEEKEEEEE 94
EEE+++EEEEE
Sbjct: 59 AAAAAAAAEEEKKEEEEEE 77
Score = 24.1 bits (53), Expect = 8.7
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 72 EKVREKGEEEEEEEEEE 88
E+ +EEEEEEEE+
Sbjct: 64 AAAEEEKKEEEEEEEED 80
>gnl|CDD|129974 TIGR00896, CynX, cyanate transporter. This family of proteins is
involved in active transport of cyanate. The cyanate
transporter in E.Coli is used to transport cyanate into
the cell so it can be metabolized into ammonia and
bicarbonate. This process is used to overcome the
toxicity of environmental cyanate [Transport and binding
proteins, Other].
Length = 355
Score = 29.3 bits (66), Expect = 0.19
Identities = 14/64 (21%), Positives = 23/64 (35%), Gaps = 5/64 (7%)
Query: 3 SHFAFSYGVFVGIGAGLSFP-----PGIFIVTSYFLKYRGLANGIAISGSALGSIFLPPF 57
S A+ VF G+ +GL + P I I G + A ++ +P
Sbjct: 196 SPLAWQVTVFFGLQSGLYYSLIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPAL 255
Query: 58 LRYL 61
R +
Sbjct: 256 ARRV 259
>gnl|CDD|182965 PRK11103, PRK11103, PTS system mannose-specific transporter subunit
IID; Provisional.
Length = 282
Score = 29.3 bits (66), Expect = 0.20
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 7/48 (14%)
Query: 38 LANGIAISGSALGSI-FLPPF------LRYLLESYGYRRDTEKVREKG 78
L GIA+SGS LG + F F RY +YGY++ + V++ G
Sbjct: 134 LGAGIAMSGSLLGPLLFFILFNLVRLATRYYGVAYGYKKGIDIVKDMG 181
>gnl|CDD|220371 pfam09736, Bud13, Pre-mRNA-splicing factor of RES complex. This
entry is characterized by proteins with alternating
conserved and low-complexity regions. Bud13 together
with Snu17p and a newly identified factor,
Pml1p/Ylr016c, form a novel trimeric complex. called
The RES complex, pre-mRNA retention and splicing
complex. Subunits of this complex are not essential for
viability of yeasts but they are required for efficient
splicing in vitro and in vivo. Furthermore,
inactivation of this complex causes pre-mRNA leakage
from the nucleus. Bud13 contains a unique,
phylogenetically conserved C-terminal region of unknown
function.
Length = 141
Score = 29.2 bits (66), Expect = 0.21
Identities = 13/29 (44%), Positives = 21/29 (72%)
Query: 66 GYRRDTEKVREKGEEEEEEEEEEKEEEEE 94
G D E+ RE+ E E+EE+E ++E+E+E
Sbjct: 9 GRIIDIEEKREEKEREKEEKERKEEKEKE 37
Score = 25.7 bits (57), Expect = 2.8
Identities = 9/29 (31%), Positives = 20/29 (68%)
Query: 67 YRRDTEKVREKGEEEEEEEEEEKEEEEEK 95
YR + ++ + E+ EE+E E++E+E ++
Sbjct: 4 YRDKSGRIIDIEEKREEKEREKEEKERKE 32
>gnl|CDD|235396 PRK05299, rpsB, 30S ribosomal protein S2; Provisional.
Length = 258
Score = 29.4 bits (67), Expect = 0.22
Identities = 16/27 (59%), Positives = 18/27 (66%)
Query: 68 RRDTEKVREKGEEEEEEEEEEKEEEEE 94
R E E+ EE EEEEEEE+EEE E
Sbjct: 227 GRLAEAAEEEEEEAEEEEEEEEEEEAE 253
Score = 27.1 bits (61), Expect = 1.4
Identities = 15/24 (62%), Positives = 19/24 (79%)
Query: 72 EKVREKGEEEEEEEEEEKEEEEEK 95
++ E EEEEEE EEE+EEEEE+
Sbjct: 227 GRLAEAAEEEEEEAEEEEEEEEEE 250
Score = 27.1 bits (61), Expect = 1.5
Identities = 17/34 (50%), Positives = 19/34 (55%)
Query: 62 LESYGYRRDTEKVREKGEEEEEEEEEEKEEEEEK 95
LE R E+ E EEEEEEEE+EE EE
Sbjct: 222 LEGRQGRLAEAAEEEEEEAEEEEEEEEEEEAEEA 255
Score = 24.7 bits (55), Expect = 8.2
Identities = 13/20 (65%), Positives = 16/20 (80%)
Query: 76 EKGEEEEEEEEEEKEEEEEK 95
E+ EEEEEEEEE+E EE +
Sbjct: 237 EEEAEEEEEEEEEEEAEEAE 256
Score = 24.7 bits (55), Expect = 9.3
Identities = 15/24 (62%), Positives = 18/24 (75%)
Query: 72 EKVREKGEEEEEEEEEEKEEEEEK 95
E+ E+ EEEEEEEEEE+ EE E
Sbjct: 234 EEEEEEAEEEEEEEEEEEAEEAEA 257
>gnl|CDD|184416 PRK13955, mscL, large-conductance mechanosensitive channel;
Provisional.
Length = 130
Score = 29.0 bits (65), Expect = 0.23
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 12/44 (27%)
Query: 51 SIFLPPFLRYLLESYGYRRDTEKVREKGEEEEEEEEEEKEEEEE 94
SIF+ F++ K+ K EEE+EEE E +EEE
Sbjct: 82 SIFM--FVKVF----------NKLTSKKEEEKEEEIPEPTKEEE 113
>gnl|CDD|221275 pfam11861, DUF3381, Domain of unknown function (DUF3381). This
domain is functionally uncharacterized. This domain is
found in eukaryotes. This presumed domain is typically
between 156 to 174 amino acids in length. This domain is
found associated with pfam07780, pfam01728.
Length = 154
Score = 29.2 bits (66), Expect = 0.23
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 72 EKVREKGEEEEEEEEEEKEEEEE 94
+K +E+ EEEE E EE EEE+
Sbjct: 98 KKEKEEEEEEEVEVEELDEEEQI 120
Score = 28.4 bits (64), Expect = 0.39
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 69 RDTEKVREKGEEEEEEEEEEKEEEEEK 95
D ++ E+ EEE E EE ++EE+ ++
Sbjct: 96 LDKKEKEEEEEEEVEVEELDEEEQIDE 122
Score = 28.4 bits (64), Expect = 0.42
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 71 TEKVREKGEEEEEEEEEEKEEEEEK 95
+EK EEEEEE E E+ +EEE+
Sbjct: 95 GLDKKEKEEEEEEEVEVEELDEEEQ 119
Score = 27.6 bits (62), Expect = 0.72
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 70 DTEKVREKGEEEEEEEEEEKEEEEEK 95
EK E+ EE E EE +E+E+ +E
Sbjct: 98 KKEKEEEEEEEVEVEELDEEEQIDEL 123
Score = 25.7 bits (57), Expect = 3.3
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 70 DTEKVREKGEEEEEEEEEEKEEEEEK 95
+ +V E EEE+ +E EKE + K
Sbjct: 107 EEVEVEELDEEEQIDELLEKELAKLK 132
Score = 25.3 bits (56), Expect = 4.2
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 68 RRDTEKVREKGEEEEEEEEEEKEEEEE 94
R+ +++ EEEEEEE E +E +EE
Sbjct: 91 RKLLGLDKKEKEEEEEEEVEVEELDEE 117
Score = 25.3 bits (56), Expect = 4.9
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 70 DTEKVREKGEEEEEEEEEEKEEEEEK 95
+ E+V + +EEE+ +E E+E K
Sbjct: 105 EEEEVEVEELDEEEQIDELLEKELAK 130
Score = 24.6 bits (54), Expect = 9.5
Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 4/28 (14%)
Query: 72 EKVRE----KGEEEEEEEEEEKEEEEEK 95
+KVR+ +E+EEEEEEE E EE
Sbjct: 88 KKVRKLLGLDKKEKEEEEEEEVEVEELD 115
>gnl|CDD|115196 pfam06524, NOA36, NOA36 protein. This family consists of several
NOA36 proteins which contain 29 highly conserved
cysteine residues. The function of this protein is
unknown.
Length = 314
Score = 29.2 bits (65), Expect = 0.29
Identities = 8/30 (26%), Positives = 17/30 (56%)
Query: 65 YGYRRDTEKVREKGEEEEEEEEEEKEEEEE 94
YGY D ++ + +EEE+ ++ + E+
Sbjct: 269 YGYESDDDEGSSSNDYDEEEDGDDDDNEDN 298
>gnl|CDD|217503 pfam03344, Daxx, Daxx Family. The Daxx protein (also known as the
Fas-binding protein) is thought to play a role in
apoptosis, but precise role played by Daxx remains to be
determined. Daxx forms a complex with Axin.
Length = 715
Score = 29.1 bits (65), Expect = 0.30
Identities = 15/20 (75%), Positives = 17/20 (85%)
Query: 76 EKGEEEEEEEEEEKEEEEEK 95
E EEEEEEEEEE+EEE+E
Sbjct: 443 ESVEEEEEEEEEEEEEEQES 462
Score = 28.0 bits (62), Expect = 0.69
Identities = 17/24 (70%), Positives = 19/24 (79%)
Query: 71 TEKVREKGEEEEEEEEEEKEEEEE 94
E V E+ EEEEEEEEEE+E EEE
Sbjct: 442 EESVEEEEEEEEEEEEEEQESEEE 465
Score = 28.0 bits (62), Expect = 0.76
Identities = 14/25 (56%), Positives = 19/25 (76%)
Query: 70 DTEKVREKGEEEEEEEEEEKEEEEE 94
+ E+ E+ EEE+E EEEE E+EEE
Sbjct: 448 EEEEEEEEEEEEQESEEEEGEDEEE 472
Score = 27.6 bits (61), Expect = 0.86
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 70 DTEKVREKGEEEEEEEEEEKEEEEE 94
+ E+ E+ +E EEEE E++EEEEE
Sbjct: 451 EEEEEEEEEQESEEEEGEDEEEEEE 475
Score = 27.6 bits (61), Expect = 0.92
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 70 DTEKVREKGEEEEEEEEEEKEEEEE 94
+ E+ E+ EEEE E+EE+EEE E
Sbjct: 453 EEEEEEEQESEEEEGEDEEEEEEVE 477
Score = 27.6 bits (61), Expect = 1.0
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 63 ESYGYRRDTEKVREKGEEEEEEEEEEKEEEEE 94
E + E+ E+ EE+E EEEE ++EEEE
Sbjct: 442 EESVEEEEEEEEEEEEEEQESEEEEGEDEEEE 473
Score = 27.2 bits (60), Expect = 1.3
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 70 DTEKVREKGEEEEEEEEEEKEEEEE 94
+ E+ E+ E+E EEEE E EEEEE
Sbjct: 450 EEEEEEEEEEQESEEEEGEDEEEEE 474
Score = 27.2 bits (60), Expect = 1.4
Identities = 15/24 (62%), Positives = 19/24 (79%)
Query: 71 TEKVREKGEEEEEEEEEEKEEEEE 94
E+ E+ EEEEEEEEEE++E EE
Sbjct: 441 EEESVEEEEEEEEEEEEEEQESEE 464
Score = 26.8 bits (59), Expect = 2.2
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 70 DTEKVREKGEEEEEEEEEEKEEEEE 94
+ E+ E+ E EEEE E+E+EEEE
Sbjct: 452 EEEEEEEEQESEEEEGEDEEEEEEV 476
Score = 26.0 bits (57), Expect = 3.6
Identities = 14/20 (70%), Positives = 18/20 (90%)
Query: 76 EKGEEEEEEEEEEKEEEEEK 95
E+ EEEEEEEEE+EEEE++
Sbjct: 442 EESVEEEEEEEEEEEEEEQE 461
Score = 25.6 bits (56), Expect = 4.2
Identities = 13/20 (65%), Positives = 17/20 (85%)
Query: 76 EKGEEEEEEEEEEKEEEEEK 95
++ EEEE EEEE+EEEEE+
Sbjct: 437 QESEEEESVEEEEEEEEEEE 456
Score = 25.6 bits (56), Expect = 5.2
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 77 KGEEEEEEEEEEKEEEEE 94
+E EEEE E+EEEEE
Sbjct: 435 ASQESEEEESVEEEEEEE 452
Score = 24.9 bits (54), Expect = 7.8
Identities = 14/26 (53%), Positives = 20/26 (76%)
Query: 70 DTEKVREKGEEEEEEEEEEKEEEEEK 95
++E+ EEEEEEEEEE+EE+E +
Sbjct: 438 ESEEEESVEEEEEEEEEEEEEEQESE 463
Score = 24.9 bits (54), Expect = 8.4
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 73 KVREKGEEEEEEEEEEKEEEEE 94
+E EEE EEEEE+EEEEE
Sbjct: 435 ASQESEEEESVEEEEEEEEEEE 456
Score = 24.9 bits (54), Expect = 9.3
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 72 EKVREKGEEEEEEEEEEKEEEEE 94
E E+GE+EEEEEE E + E
Sbjct: 461 ESEEEEGEDEEEEEEVEADNGSE 483
>gnl|CDD|221756 pfam12757, DUF3812, Protein of unknown function (DUF3812). This is
a family of fungal proteins whose function is not known.
Length = 126
Score = 28.4 bits (64), Expect = 0.31
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 69 RDTEKVREKGEEEEEEEEEEKEEEEEK 95
RD EK + EE + + EE KE E EK
Sbjct: 99 RDEEK-KLDEEEAKRQHEEAKEREREK 124
Score = 26.5 bits (59), Expect = 1.7
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 72 EKVREKGEEEEEEEEEEKEEEEE 94
E R + EE++ +EEE K + EE
Sbjct: 94 EAQRARDEEKKLDEEEAKRQHEE 116
Score = 24.6 bits (54), Expect = 7.3
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 76 EKGEEEEEEEEEEKEEEEE 94
E+ E + +EE+K +EEE
Sbjct: 91 ERAEAQRARDEEKKLDEEE 109
>gnl|CDD|220135 pfam09184, PPP4R2, PPP4R2. PPP4R2 (protein phosphatase 4 core
regulatory subunit R2) is the regulatory subunit of the
histone H2A phosphatase complex. It has been shown to
confer resistance to the anticancer drug cisplatin in
yeast, and may confer resistance in higher eukaryotes.
Length = 285
Score = 28.6 bits (64), Expect = 0.33
Identities = 15/25 (60%), Positives = 19/25 (76%)
Query: 70 DTEKVREKGEEEEEEEEEEKEEEEE 94
D + V EK +E+EEEEE +EEEEE
Sbjct: 256 DGDYVEEKELKEDEEEEETEEEEEE 280
Score = 26.7 bits (59), Expect = 1.6
Identities = 14/26 (53%), Positives = 20/26 (76%)
Query: 70 DTEKVREKGEEEEEEEEEEKEEEEEK 95
D + +E E+EEEEE EE+EEEE++
Sbjct: 258 DYVEEKELKEDEEEEETEEEEEEEDE 283
Score = 26.3 bits (58), Expect = 2.3
Identities = 14/24 (58%), Positives = 18/24 (75%)
Query: 72 EKVREKGEEEEEEEEEEKEEEEEK 95
E+ K +EEEEE EEE+EEE+E
Sbjct: 261 EEKELKEDEEEEETEEEEEEEDED 284
Score = 25.9 bits (57), Expect = 3.6
Identities = 12/16 (75%), Positives = 15/16 (93%)
Query: 79 EEEEEEEEEEKEEEEE 94
EEEE EEEEE+E+E+E
Sbjct: 270 EEEETEEEEEEEDEDE 285
>gnl|CDD|220759 pfam10446, DUF2457, Protein of unknown function (DUF2457). This
is a family of uncharacterized proteins.
Length = 449
Score = 28.8 bits (64), Expect = 0.37
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 73 KVREKGEEEEEEEEEEKEEEEE 94
+R+ G+E EEE EE++++EE
Sbjct: 37 AIRKLGKEAEEEAMEEEDDDEE 58
Score = 25.3 bits (55), Expect = 6.3
Identities = 7/27 (25%), Positives = 20/27 (74%)
Query: 68 RRDTEKVREKGEEEEEEEEEEKEEEEE 94
R+ ++ E+ EEE+++EE+ +++++
Sbjct: 39 RKLGKEAEEEAMEEEDDDEEDDDDDDD 65
>gnl|CDD|217829 pfam03985, Paf1, Paf1. Members of this family are components of
the RNA polymerase II associated Paf1 complex. The Paf1
complex functions during the elongation phase of
transcription in conjunction with Spt4-Spt5 and
Spt16-Pob3i.
Length = 431
Score = 28.5 bits (64), Expect = 0.38
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 70 DTEKVREKGEEEEEEEEEEKEEEEE 94
D E+V E +EEEE+ +E EEEE
Sbjct: 366 DFEEVDEDEDEEEEQRSDEHEEEEG 390
Score = 26.6 bits (59), Expect = 1.9
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 64 SYGYRRDTEKVREKGEEEEEEEEEEKEEEEE 94
+ + E E+ +E EEEE ++ EEE
Sbjct: 366 DFEEVDEDEDEEEEQRSDEHEEEEGEDSEEE 396
Score = 26.6 bits (59), Expect = 2.3
Identities = 7/20 (35%), Positives = 14/20 (70%)
Query: 76 EKGEEEEEEEEEEKEEEEEK 95
+ E +E+E+EEE++ +E
Sbjct: 366 DFEEVDEDEDEEEEQRSDEH 385
Score = 25.9 bits (57), Expect = 4.1
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 68 RRDTEKVREKGEEEEEEEEEEKEEEEEK 95
D ++ E+ +E EEEE E EEE
Sbjct: 371 DEDEDEEEEQRSDEHEEEEGEDSEEEGS 398
Score = 25.5 bits (56), Expect = 4.9
Identities = 9/20 (45%), Positives = 17/20 (85%)
Query: 76 EKGEEEEEEEEEEKEEEEEK 95
E+ +E+E+EEEE++ +E E+
Sbjct: 368 EEVDEDEDEEEEQRSDEHEE 387
Score = 25.5 bits (56), Expect = 6.0
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 68 RRDTEKVREKGEEEEEEEEEEKEEEEE 94
R D E E+E+EEEE+ +E EE
Sbjct: 361 RLDPIDFEEVDEDEDEEEEQRSDEHEE 387
Score = 25.1 bits (55), Expect = 7.0
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 69 RDTEKVREKGEEEEEEEEEEKEEEEEK 95
+ +K R + + + EE +E E+EEE+
Sbjct: 353 KMRDKRRARLDPIDFEEVDEDEDEEEE 379
Score = 24.7 bits (54), Expect = 8.6
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 70 DTEKVREKGEEEEEEEEEEKEEEEEK 95
+ E EEE+ +E E+EE E+
Sbjct: 368 EEVDEDEDEEEEQRSDEHEEEEGEDS 393
>gnl|CDD|224969 COG2058, RPP1A, Ribosomal protein L12E/L44/L45/RPP1/RPP2
[Translation, ribosomal structure and biogenesis].
Length = 109
Score = 28.1 bits (63), Expect = 0.38
Identities = 13/23 (56%), Positives = 15/23 (65%)
Query: 72 EKVREKGEEEEEEEEEEKEEEEE 94
E E E EEEE+EEE EEE +
Sbjct: 78 EAAAEADEAEEEEKEEEAEEESD 100
Score = 25.4 bits (56), Expect = 3.5
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 76 EKGEEEEEEEEEEKEEEEE 94
EEEE+EEE +EE ++
Sbjct: 83 ADEAEEEEKEEEAEEESDD 101
Score = 24.7 bits (54), Expect = 7.3
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 76 EKGEEEEEEEEEEKEEEEEK 95
G E E +E +EEE+E+
Sbjct: 74 AAGAEAAAEADEAEEEEKEE 93
>gnl|CDD|224530 COG1614, CdhC, CO dehydrogenase/acetyl-CoA synthase beta subunit
[Energy production and conversion].
Length = 470
Score = 28.6 bits (64), Expect = 0.41
Identities = 14/23 (60%), Positives = 16/23 (69%)
Query: 72 EKVREKGEEEEEEEEEEKEEEEE 94
E+ E+ EEEEEEEEEE E E
Sbjct: 399 ERWAEEEEEEEEEEEEEAAEAEA 421
Score = 28.6 bits (64), Expect = 0.41
Identities = 14/21 (66%), Positives = 16/21 (76%)
Query: 74 VREKGEEEEEEEEEEKEEEEE 94
V E+ EEEEEEEEE+EEE
Sbjct: 397 VVERWAEEEEEEEEEEEEEAA 417
Score = 28.6 bits (64), Expect = 0.46
Identities = 14/21 (66%), Positives = 15/21 (71%)
Query: 74 VREKGEEEEEEEEEEKEEEEE 94
V EEEEEEEEEE+EE E
Sbjct: 398 VERWAEEEEEEEEEEEEEAAE 418
Score = 28.2 bits (63), Expect = 0.56
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Query: 58 LRYLLESYGY---RRDTEKVREKGEEEEEEEEEEKEEEEE 94
LR L+ G+ R E+ E+ EEEEEE E + EE
Sbjct: 386 LREFLKEKGHPVVERWAEEEEEEEEEEEEEAAEAEAPMEE 425
Score = 27.5 bits (61), Expect = 0.93
Identities = 12/17 (70%), Positives = 14/17 (82%)
Query: 79 EEEEEEEEEEKEEEEEK 95
EEEEEEEEEE+E E +
Sbjct: 404 EEEEEEEEEEEEAAEAE 420
Score = 25.2 bits (55), Expect = 6.4
Identities = 12/15 (80%), Positives = 13/15 (86%)
Query: 81 EEEEEEEEKEEEEEK 95
EEEEEEE+EEEEE
Sbjct: 402 AEEEEEEEEEEEEEA 416
>gnl|CDD|223553 COG0477, ProP, Permeases of the major facilitator superfamily
[Carbohydrate transport and metabolism / Amino acid
transport and metabolism / Inorganic ion transport and
metabolism / General function prediction only].
Length = 338
Score = 28.5 bits (62), Expect = 0.41
Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Query: 11 VFVGIGAGLSFPPGIFIVTSYF--LKYRGLANGIAISGSALGSIFLPPFLRYLLESYG 66
+ G+G G P +++ +F RGLA G+ G+ + L P L LL
Sbjct: 102 LLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGAL 159
>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein.
Length = 529
Score = 28.6 bits (64), Expect = 0.43
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 71 TEKVREKGEEEEEEEEEEKEEEEEK 95
E+ +E+ E+ ++EEE EEEE++
Sbjct: 44 KEEKKEEEEKTTDKEEEVDEEEEKE 68
Score = 28.6 bits (64), Expect = 0.49
Identities = 18/26 (69%), Positives = 21/26 (80%), Gaps = 2/26 (7%)
Query: 72 EKVREK--GEEEEEEEEEEKEEEEEK 95
EK EK +EEEEEE+EEK+EEEEK
Sbjct: 28 EKEVEKEVPDEEEEEEKEEKKEEEEK 53
Score = 28.2 bits (63), Expect = 0.51
Identities = 11/26 (42%), Positives = 20/26 (76%)
Query: 70 DTEKVREKGEEEEEEEEEEKEEEEEK 95
+ ++ EK ++EEE +EE+E+EE+K
Sbjct: 46 EKKEEEEKTTDKEEEVDEEEEKEEKK 71
Score = 26.7 bits (59), Expect = 2.3
Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 6/32 (18%)
Query: 70 DTEKVREKGEEEEE------EEEEEKEEEEEK 95
+ E+ +E+ +EEEE EE +E+EE+EEK
Sbjct: 39 EEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEK 70
Score = 25.1 bits (55), Expect = 8.2
Identities = 10/24 (41%), Positives = 19/24 (79%)
Query: 72 EKVREKGEEEEEEEEEEKEEEEEK 95
E+ + ++EEE +EEE++EE++K
Sbjct: 49 EEEEKTTDKEEEVDEEEEKEEKKK 72
Score = 24.7 bits (54), Expect = 8.6
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 70 DTEKVREKGEEEEEEEEEEKEEEEE 94
D E+ EK E++EEEE+ +EEE
Sbjct: 37 DEEEEEEKEEKKEEEEKTTDKEEEV 61
>gnl|CDD|236892 PRK11281, PRK11281, hypothetical protein; Provisional.
Length = 1113
Score = 28.7 bits (65), Expect = 0.44
Identities = 10/26 (38%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 67 YRRDTEKVREKGEEEEEEEEEEKEEE 92
YRR K R+ +E E E EE
Sbjct: 748 YRRALAK-RQNLVKEGAEGAEPVEEP 772
>gnl|CDD|206416 pfam14248, DUF4345, Domain of unknown function (DUF4345). This
family of proteins is found in bacteria, archaea and
eukaryotes. Proteins in this family are typically
between 125 and 141 amino acids in length. There is a
single completely conserved residue E that may be
functionally important.
Length = 124
Score = 28.0 bits (63), Expect = 0.44
Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 13/58 (22%)
Query: 3 SHFAFSYGVFVGIGAGLSFPPGIFIVTSYFLKYRGLA---NGIAISGSALG---SIFL 54
SHF F G+++G+G +F+ +K R A + I LG S+ L
Sbjct: 45 SHFRFLAGLYLGLGL-------LFLAGIPKIKRRRPALRFLALFIFIGGLGRLLSLAL 95
>gnl|CDD|235229 PRK04156, gltX, glutamyl-tRNA synthetase; Provisional.
Length = 567
Score = 28.7 bits (65), Expect = 0.45
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 72 EKVREKGEEEEEEEEEEKEEEEE 94
E++ E E EEEEE+KEE++
Sbjct: 68 ERLEELAPELLEEEEEKKEEKKG 90
>gnl|CDD|218538 pfam05285, SDA1, SDA1. This family consists of several SDA1
protein homologues. SDA1 is a Saccharomyces cerevisiae
protein which is involved in the control of the actin
cytoskeleton. The protein is essential for cell
viability and is localised in the nucleus.
Length = 317
Score = 28.5 bits (64), Expect = 0.46
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 61 LLESYGYRRDTEKVREKGEEEEEEEEEEKEEEEE 94
LLE + +K E+G E +++++EE+E E E
Sbjct: 74 LLEKWKEEERKKKEAEQGLESDDDDDEEEEWEVE 107
Score = 25.8 bits (57), Expect = 3.6
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 72 EKVREKGEEEEEEEEEEKEEEEEK 95
K E EE+EEE EEEE +
Sbjct: 145 AKEDSDEELSEEDEEEAAEEEEAE 168
Score = 25.4 bits (56), Expect = 4.7
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 68 RRDTEKVREKGEEEEEEEEEEKEEEEEK 95
++ E+EEE EEE+ E E++
Sbjct: 145 AKEDSDEELSEEDEEEAAEEEEAEAEKE 172
Score = 25.4 bits (56), Expect = 5.2
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 68 RRDTEKVREKGEEEEEEEEEEKEEEEEK 95
+ + E EE+EEE EE+E E EK
Sbjct: 144 KAKEDSDEELSEEDEEEAAEEEEAEAEK 171
>gnl|CDD|150531 pfam09871, DUF2098, Uncharacterized protein conserved in archaea
(DUF2098). This domain, found in various hypothetical
prokaryotic proteins, has no known function.
Length = 91
Score = 27.7 bits (62), Expect = 0.48
Identities = 17/37 (45%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
Query: 61 LLESYG--YRRDTEKVREKGEEEEEEEEEEKEEEEEK 95
LL+S YR D +V +K +E++EE EE+KEE E+
Sbjct: 33 LLDSTDLYYRTDYLEVTDKVKEKKEEREEDKEELIER 69
>gnl|CDD|148630 pfam07133, Merozoite_SPAM, Merozoite surface protein (SPAM).
This family consists of several Plasmodium falciparum
SPAM (secreted polymorphic antigen associated with
merozoites) proteins. Variation among SPAM alleles is
the result of deletions and amino acid substitutions in
non-repetitive sequences within and flanking the
alanine heptad-repeat domain. Heptad repeats in which
the a and d position contain hydrophobic residues
generate amphipathic alpha-helices which give rise to
helical bundles or coiled-coil structures in proteins.
SPAM is an example of a P. falciparum antigen in which
a repetitive sequence has features characteristic of a
well-defined structural element.
Length = 164
Score = 27.9 bits (62), Expect = 0.52
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 70 DTEKVREKGEEEEEEEEEEKEEEEEK 95
+ E V ++ EEEE+EE+ ++ EK
Sbjct: 71 EEEIVEDEEEEEEDEEDNVDLKDIEK 96
Score = 27.5 bits (61), Expect = 0.88
Identities = 13/21 (61%), Positives = 17/21 (80%)
Query: 75 REKGEEEEEEEEEEKEEEEEK 95
EK E++EEEEEE++EE EE
Sbjct: 45 DEKQEDDEEEEEEDEEEIEEP 65
Score = 26.4 bits (58), Expect = 1.9
Identities = 13/28 (46%), Positives = 21/28 (75%), Gaps = 2/28 (7%)
Query: 70 DTEKVREKGEEEEEEE--EEEKEEEEEK 95
D E++ E + E+EEE E+E+EEEE++
Sbjct: 58 DEEEIEEPEDIEDEEEIVEDEEEEEEDE 85
Score = 26.4 bits (58), Expect = 1.9
Identities = 13/27 (48%), Positives = 22/27 (81%)
Query: 69 RDTEKVREKGEEEEEEEEEEKEEEEEK 95
++ E V+++ +E++EEEEEE EEE E+
Sbjct: 38 KENEDVKDEKQEDDEEEEEEDEEEIEE 64
Score = 26.4 bits (58), Expect = 2.0
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 72 EKVREKGEEEEEEEEEEKEEEEE 94
++ +E EEEEEE+EEE EE E+
Sbjct: 45 DEKQEDDEEEEEEDEEEIEEPED 67
Score = 26.0 bits (57), Expect = 2.7
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 70 DTEKVREKGEEEEEEEEEEKEEEEE 94
D E++ E EEEEE+EE+ + ++
Sbjct: 70 DEEEIVEDEEEEEEDEEDNVDLKDI 94
Score = 24.8 bits (54), Expect = 7.2
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 68 RRDTEKVREKGEEEEEEEEEEKEEEE 93
+ + ++ E+ EEE+EEE EE E+ E
Sbjct: 44 KDEKQEDDEEEEEEDEEEIEEPEDIE 69
>gnl|CDD|234691 PRK00220, PRK00220, putative glycerol-3-phosphate acyltransferase
PlsY; Provisional.
Length = 198
Score = 27.8 bits (63), Expect = 0.57
Identities = 11/60 (18%), Positives = 23/60 (38%), Gaps = 7/60 (11%)
Query: 10 GVFVGIGAGLSFPP-------GIFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLL 62
GV G L P +++ + +Y LA +A + + + PP ++ +
Sbjct: 107 GVATAAGVLLGIGPLLALILAATWLLVALLTRYSSLAALVAALIAPIYVWWFPPDWQFTI 166
>gnl|CDD|218838 pfam05982, DUF897, Domain of unknown function (DUF897). Family
of bacterial proteins with unknown function.
Length = 327
Score = 28.1 bits (63), Expect = 0.61
Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 7 FSYGVFVGI-GAGLSFPPGIF-IVTSYFLKYRGLANGIAISGSALGSIFLP 55
F+ G+ + L P I+ ++ Y L GL G+ + S L ++ P
Sbjct: 6 FALGMLAAAFKSDLEIPEAIYETLSLYLLLAIGLKGGMELRKSNLTAVVGP 56
>gnl|CDD|145949 pfam03066, Nucleoplasmin, Nucleoplasmin. Nucleoplasmins are also
known as chromatin decondensation proteins. They bind to
core histones and transfer DNA to them in a reaction
that requires ATP. This is thought to play a role in the
assembly of regular nucleosomal arrays.
Length = 146
Score = 27.7 bits (62), Expect = 0.64
Identities = 9/17 (52%), Positives = 15/17 (88%)
Query: 79 EEEEEEEEEEKEEEEEK 95
E+EEEE++EE ++E+E
Sbjct: 119 EDEEEEDDEEDDDEDES 135
Score = 27.7 bits (62), Expect = 0.68
Identities = 10/20 (50%), Positives = 17/20 (85%)
Query: 76 EKGEEEEEEEEEEKEEEEEK 95
E+ EEEE++EE++ E+E E+
Sbjct: 118 EEDEEEEDDEEDDDEDESEE 137
Score = 27.3 bits (61), Expect = 0.85
Identities = 8/19 (42%), Positives = 16/19 (84%)
Query: 76 EKGEEEEEEEEEEKEEEEE 94
+EE+EEEE+++E+++E
Sbjct: 114 SDDDEEDEEEEDDEEDDDE 132
Score = 27.3 bits (61), Expect = 0.87
Identities = 8/19 (42%), Positives = 17/19 (89%)
Query: 76 EKGEEEEEEEEEEKEEEEE 94
+ EE+EEEE++E++++E+
Sbjct: 115 DDDEEDEEEEDDEEDDDED 133
Score = 26.9 bits (60), Expect = 1.1
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 58 LRYLLESYGYRRDTEKVREKGEEEEEEEEEEKEEEE 93
L E D E+ E+ ++EE+++E+E EEEE
Sbjct: 106 LVASEEDESD--DDEEDEEEEDDEEDDDEDESEEEE 139
Score = 26.9 bits (60), Expect = 1.3
Identities = 9/16 (56%), Positives = 14/16 (87%)
Query: 79 EEEEEEEEEEKEEEEE 94
EE++EE+++E E EEE
Sbjct: 123 EEDDEEDDDEDESEEE 138
Score = 26.5 bits (59), Expect = 1.6
Identities = 8/19 (42%), Positives = 17/19 (89%)
Query: 76 EKGEEEEEEEEEEKEEEEE 94
++ +++EE+EEEE +EE++
Sbjct: 112 DESDDDEEDEEEEDDEEDD 130
Score = 26.5 bits (59), Expect = 2.0
Identities = 8/17 (47%), Positives = 15/17 (88%)
Query: 79 EEEEEEEEEEKEEEEEK 95
E++EE+++E++ EEEE
Sbjct: 124 EDDEEDDDEDESEEEES 140
Score = 24.6 bits (54), Expect = 7.2
Identities = 9/19 (47%), Positives = 17/19 (89%)
Query: 76 EKGEEEEEEEEEEKEEEEE 94
E+ E +++EE+EE+E++EE
Sbjct: 110 EEDESDDDEEDEEEEDDEE 128
Score = 24.6 bits (54), Expect = 8.1
Identities = 8/21 (38%), Positives = 17/21 (80%)
Query: 74 VREKGEEEEEEEEEEKEEEEE 94
V + +E +++EE+E+EE++E
Sbjct: 107 VASEEDESDDDEEDEEEEDDE 127
>gnl|CDD|227937 COG5650, COG5650, Predicted integral membrane protein [Function
unknown].
Length = 536
Score = 28.2 bits (63), Expect = 0.66
Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 10/50 (20%)
Query: 26 FIVTSYFLKYRGLANGIAISGSALGS-------IFLPPFLRYLLESYGYR 68
F+ + + R G+ I L S I LPP L + + YG R
Sbjct: 225 FLAAALVCRGRPKLAGVLI---GLSSAFKQIPLIVLPPLLYLIYKEYGLR 271
>gnl|CDD|218562 pfam05342, Peptidase_M26_N, M26 IgA1-specific
Metallo-endopeptidase N-terminal region. These
peptidases, which cleave mammalian IgA, are found in
Gram-positive bacteria. Often found associated with
pfam00746, they may be attached to the cell wall.
Length = 252
Score = 27.7 bits (62), Expect = 0.72
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 62 LESY-GYRRDTEKVREKGEEEEEEEEEEKEEEEE 94
L+ Y Y T V ++GE E E EEK + +
Sbjct: 3 LDYYKEYTLSTTMVYDRGEGSETETLEEKPVQLD 36
>gnl|CDD|240285 PTZ00135, PTZ00135, 60S acidic ribosomal protein P0; Provisional.
Length = 310
Score = 27.7 bits (62), Expect = 0.75
Identities = 6/24 (25%), Positives = 9/24 (37%)
Query: 71 TEKVREKGEEEEEEEEEEKEEEEE 94
EEE+EEE++
Sbjct: 280 AAAAAAAAAAAAAPAEEEEEEEDD 303
Score = 26.5 bits (59), Expect = 2.1
Identities = 6/22 (27%), Positives = 9/22 (40%)
Query: 70 DTEKVREKGEEEEEEEEEEKEE 91
EEEEEE+++
Sbjct: 282 AAAAAAAAAAAPAEEEEEEEDD 303
>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional.
Length = 1388
Score = 28.1 bits (63), Expect = 0.75
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 67 YRRDTEKVREKGEEEEEEEEEEKEEEEEK 95
+ D +K E EE+EE EE+E +E+
Sbjct: 1130 WLEDLDKFEEALEEQEEVEEKEIAKEQRL 1158
>gnl|CDD|227701 COG5414, COG5414, TATA-binding protein-associated factor
[Transcription].
Length = 392
Score = 27.7 bits (61), Expect = 0.83
Identities = 7/35 (20%), Positives = 16/35 (45%)
Query: 61 LLESYGYRRDTEKVREKGEEEEEEEEEEKEEEEEK 95
S G + ++ E E +EE + ++ +E +
Sbjct: 287 KEVSEGDKEQQQEEVENAEAHKEEVQSDRPDEIGE 321
Score = 26.6 bits (58), Expect = 2.0
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 70 DTEKVREKGEEEEEEEEEEKEEEEEK 95
E + +E EEKEE++E
Sbjct: 304 AEAHKEEVQSDRPDEIGEEKEEDDEN 329
>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3. This
protein, which interacts with both microtubules and
TRAF3 (tumour necrosis factor receptor-associated factor
3), is conserved from worms to humans. The N-terminal
region is the microtubule binding domain and is
well-conserved; the C-terminal 100 residues, also
well-conserved, constitute the coiled-coil region which
binds to TRAF3. The central region of the protein is
rich in lysine and glutamic acid and carries KKE motifs
which may also be necessary for tubulin-binding, but
this region is the least well-conserved.
Length = 506
Score = 27.9 bits (62), Expect = 0.84
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 68 RRDTEKVREKGEEEEEEEEEEKEEEEEK 95
++ EK +EK EE + EEEK+ E +
Sbjct: 143 PKEKEKEKEKKVEEPRDREEEKKRERVR 170
Score = 26.0 bits (57), Expect = 3.0
Identities = 8/25 (32%), Positives = 18/25 (72%)
Query: 71 TEKVREKGEEEEEEEEEEKEEEEEK 95
E+ ++ +EE+++++EK +EE K
Sbjct: 105 EEEKEKEQVKEEKKKKKEKPKEEPK 129
Score = 26.0 bits (57), Expect = 3.8
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 69 RDTEKVREKGEEEEEEEEEEKEEEEEK 95
R + KG+ EE + EE+E+EE+
Sbjct: 197 RQAAREAVKGKPEEPDVNEEREKEEDD 223
Score = 24.8 bits (54), Expect = 8.0
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 68 RRDTEKVREKGEEEEEEEEEEKEEEEEK 95
+ + + + K E +E+ +EKE+E+EK
Sbjct: 125 KEEPKDRKPKEEAKEKRPPKEKEKEKEK 152
>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family. Atrophin-1 is the
protein product of the dentatorubral-pallidoluysian
atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive
neurodegenerative disorder. It is caused by the
expansion of a CAG repeat in the DRPLA gene on
chromosome 12p. This results in an extended
polyglutamine region in atrophin-1, that is thought to
confer toxicity to the protein, possibly through
altering its interactions with other proteins. The
expansion of a CAG repeat is also the underlying defect
in six other neurodegenerative disorders, including
Huntington's disease. One interaction of expanded
polyglutamine repeats that is thought to be pathogenic
is that with the short glutamine repeat in the
transcriptional coactivator CREB binding protein, CBP.
This interaction draws CBP away from its usual nuclear
location to the expanded polyglutamine repeat protein
aggregates that are characteristic of the polyglutamine
neurodegenerative disorders. This interferes with
CBP-mediated transcription and causes cytotoxicity.
Length = 979
Score = 27.7 bits (61), Expect = 0.86
Identities = 10/28 (35%), Positives = 19/28 (67%)
Query: 68 RRDTEKVREKGEEEEEEEEEEKEEEEEK 95
+R+ E+ + E E+E+E+E+E E E+
Sbjct: 589 KREAEQKAREEREREKEKEKERERERER 616
Score = 27.7 bits (61), Expect = 0.88
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 72 EKVREKGEEEEEEEEEEKEEE 92
E+ REK +E+E E E E+E E
Sbjct: 599 EREREKEKEKEREREREREAE 619
>gnl|CDD|114172 pfam05432, BSP_II, Bone sialoprotein II (BSP-II). Bone
sialoprotein (BSP) is a major structural protein of the
bone matrix that is specifically expressed by
fully-differentiated osteoblasts. The expression of bone
sialoprotein (BSP) is normally restricted to mineralised
connective tissues of bones and teeth where it has been
associated with mineral crystal formation. However, it
has been found that ectopic expression of BSP occurs in
various lesions, including oral and extraoral
carcinomas, in which it has been associated with the
formation of microcrystalline deposits and the
metastasis of cancer cells to bone.
Length = 291
Score = 27.7 bits (61), Expect = 0.87
Identities = 12/19 (63%), Positives = 17/19 (89%)
Query: 76 EKGEEEEEEEEEEKEEEEE 94
++ +E+EEEEEEE+EEE E
Sbjct: 133 DESDEDEEEEEEEEEEEAE 151
Score = 27.4 bits (60), Expect = 1.2
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 70 DTEKVREKGEEEEEEEEEEKEEEEEK 95
+ K K +E +E+EEEE+EEEEE+
Sbjct: 124 NAGKKATKEDESDEDEEEEEEEEEEE 149
Score = 26.6 bits (58), Expect = 2.1
Identities = 12/21 (57%), Positives = 17/21 (80%)
Query: 75 REKGEEEEEEEEEEKEEEEEK 95
+E +E+EEEEEE+EEEE +
Sbjct: 131 KEDESDEDEEEEEEEEEEEAE 151
Score = 26.6 bits (58), Expect = 2.3
Identities = 14/21 (66%), Positives = 16/21 (76%)
Query: 73 KVREKGEEEEEEEEEEKEEEE 93
K E E+EEEEEEEE+EE E
Sbjct: 131 KEDESDEDEEEEEEEEEEEAE 151
Score = 25.4 bits (55), Expect = 6.2
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 63 ESYGYRRDTEKVREKGEEEEEEEEEEKEEEEE 94
+ D E+ EEEEEEEE E EE E+
Sbjct: 126 GKKATKEDESDEDEEEEEEEEEEEAEVEENEQ 157
>gnl|CDD|224199 COG1280, RhtB, Putative threonine efflux protein [Amino acid
transport and metabolism].
Length = 208
Score = 27.6 bits (62), Expect = 0.91
Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 4/50 (8%)
Query: 8 SYGVFVGIGAGLSFPPG--IFIVTSYFLKYRGLANGIAIS-GSALGSIFL 54
+ F+ L+ PG +V + L RG G+A + G ALG +
Sbjct: 5 NLLAFLLAALVLAATPGPDNLLVLARSLS-RGRRAGLATALGIALGDLVH 53
>gnl|CDD|215637 PLN03223, PLN03223, Polycystin cation channel protein; Provisional.
Length = 1634
Score = 27.6 bits (61), Expect = 0.92
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 5/29 (17%)
Query: 72 EKVRE-----KGEEEEEEEEEEKEEEEEK 95
+VR KGE +EEEEE EE+EK
Sbjct: 1463 ARVRRQLRIWKGENPDEEEEEAFREEKEK 1491
>gnl|CDD|217206 pfam02731, SKIP_SNW, SKIP/SNW domain. This domain is found in
chromatin proteins.
Length = 158
Score = 27.3 bits (61), Expect = 0.96
Identities = 11/24 (45%), Positives = 19/24 (79%)
Query: 72 EKVREKGEEEEEEEEEEKEEEEEK 95
E+VR++ E + + E+EK+E+EEK
Sbjct: 123 EEVRQRAELQRQLAEKEKQEKEEK 146
>gnl|CDD|150446 pfam09777, OSTMP1, Osteopetrosis-associated transmembrane protein 1
precursor. Members of this family of proteins are
required for osteoclast and melanocyte maturation and
function. Mutations give rise to autosomal recessive
osteopetrosis, also called autosomal recessive
Albers-Schonberg disease.
Length = 228
Score = 27.4 bits (61), Expect = 1.0
Identities = 6/26 (23%), Positives = 14/26 (53%)
Query: 8 SYGVFVGIGAGLSFPPGIFIVTSYFL 33
+G + + + + F P +F ++SY
Sbjct: 179 LFGAVIAVSSFILFLPVLFYLSSYLH 204
>gnl|CDD|226513 COG4026, COG4026, Uncharacterized protein containing TOPRIM domain,
potential nuclease [General function prediction only].
Length = 290
Score = 27.2 bits (60), Expect = 1.2
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 58 LRYLLESYGYRRDTEKVREKGEEEEEEEEEEKEEEEEK 95
L+ + E + D E+++EK EE ++E+EE +E EE
Sbjct: 124 LQRVPEYMDLKEDYEELKEKLEELQKEKEELLKELEEL 161
>gnl|CDD|219956 pfam08658, Rad54_N, Rad54 N terminal. This is the N terminal of
the DNA repair protein Rad54.
Length = 191
Score = 27.3 bits (61), Expect = 1.2
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 74 VREKGEEEEEEEEEEKEEEEEK 95
+ K EEE+ E+++E EE E K
Sbjct: 143 DKPKIEEEKAEKDQEPEESETK 164
Score = 25.4 bits (56), Expect = 5.0
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 70 DTEKVREKGEEEEEEEEEEKEEEEE 94
D K+ E+ E+++E EE + +
Sbjct: 143 DKPKIEEEKAEKDQEPEESETKLSN 167
Score = 24.6 bits (54), Expect = 8.5
Identities = 9/22 (40%), Positives = 16/22 (72%)
Query: 74 VREKGEEEEEEEEEEKEEEEEK 95
V +K + EEE+ E+++E EE +
Sbjct: 141 VDDKPKIEEEKAEKDQEPEESE 162
>gnl|CDD|219062 pfam06496, DUF1097, Protein of unknown function (DUF1097). This
family consists of several bacterial putative membrane
proteins.
Length = 140
Score = 26.8 bits (60), Expect = 1.3
Identities = 20/80 (25%), Positives = 27/80 (33%), Gaps = 24/80 (30%)
Query: 1 MSSHFAFSYGVFVGIGAG----------LSFPPGIFIVTSYFLKYRGLANGIAISG---- 46
+ + Y + GI A LSF PG F+ G A+ A G
Sbjct: 66 LGGNPLAGY-ILTGIVAFVMCLQAKVPLLSFIPGTFL---------GCASTFAAIGGDWL 115
Query: 47 SALGSIFLPPFLRYLLESYG 66
L S+ + L Y E G
Sbjct: 116 VVLPSLAVGALLGYASEWLG 135
>gnl|CDD|225978 COG3447, COG3447, Predicted integral membrane sensor domain
[Signal transduction mechanisms].
Length = 308
Score = 27.0 bits (60), Expect = 1.4
Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Query: 5 FAFSYGVFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFLPPFL 58
F+ F A L FP I + Y R + GIA+ +LG+I L
Sbjct: 32 FSLELSQFGTQLAPLWFPTSIMMGAFYRHAGR-MWPGIAL-SCSLGNIAASILL 83
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
Length = 2084
Score = 27.4 bits (60), Expect = 1.4
Identities = 10/28 (35%), Positives = 19/28 (67%)
Query: 68 RRDTEKVREKGEEEEEEEEEEKEEEEEK 95
+ E++++K EE+++ EE K+ EEE
Sbjct: 1701 AKKAEELKKKEAEEKKKAEELKKAEEEN 1728
Score = 26.3 bits (57), Expect = 3.1
Identities = 8/28 (28%), Positives = 17/28 (60%)
Query: 68 RRDTEKVREKGEEEEEEEEEEKEEEEEK 95
++ E+ ++ E+E++ E K+E EE
Sbjct: 1674 KKKAEEAKKAEEDEKKAAEALKKEAEEA 1701
Score = 26.3 bits (57), Expect = 3.3
Identities = 10/24 (41%), Positives = 20/24 (83%)
Query: 72 EKVREKGEEEEEEEEEEKEEEEEK 95
E+ +++ EE++++ EE K++EEEK
Sbjct: 1733 EEAKKEAEEDKKKAEEAKKDEEEK 1756
Score = 25.5 bits (55), Expect = 6.2
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 68 RRDTEKVREKGEEEEEEEEEEKEEEEE 94
+ E+ ++K EE ++ EE+EK+ E
Sbjct: 1667 AKKAEEDKKKAEEAKKAEEDEKKAAEA 1693
Score = 25.5 bits (55), Expect = 6.6
Identities = 8/24 (33%), Positives = 17/24 (70%)
Query: 72 EKVREKGEEEEEEEEEEKEEEEEK 95
+ +K EE++++ EE K+ EE++
Sbjct: 1664 AEEAKKAEEDKKKAEEAKKAEEDE 1687
>gnl|CDD|149343 pfam08229, SHR3_chaperone, ER membrane protein SH3. This family of
proteins are membrane localised chaperones that are
required for correct plasma membrane localisation of
amino acid permeases (AAPs). SH3 prevents AAPs proteins
from aggregating and assists in their correct folding.
In the absence of SH3, AAPs are retained in the ER.
Length = 196
Score = 26.9 bits (60), Expect = 1.4
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 65 YGYRRDTEKVREKGEEEEEEEEEEKEEEEEK 95
Y +D + + E EE E KEEE +
Sbjct: 156 YAEWKDAKLLEEFAAEEAEAAAAAKEEESAE 186
>gnl|CDD|217286 pfam02919, Topoisom_I_N, Eukaryotic DNA topoisomerase I, DNA
binding fragment. Topoisomerase I promotes the
relaxation of DNA superhelical tension by introducing a
transient single-stranded break in duplex DNA and are
vital for the processes of replication, transcription,
and recombination. This family may be more than one
structural domain.
Length = 215
Score = 26.8 bits (60), Expect = 1.5
Identities = 9/29 (31%), Positives = 18/29 (62%)
Query: 67 YRRDTEKVREKGEEEEEEEEEEKEEEEEK 95
+ + EK + +EE++ +EEK++ EE
Sbjct: 95 FEAEKEKKKAMSKEEKKAIKEEKDKLEEP 123
>gnl|CDD|240329 PTZ00248, PTZ00248, eukaryotic translation initiation factor 2
subunit 1; Provisional.
Length = 319
Score = 26.9 bits (60), Expect = 1.5
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 70 DTEKVREKGEEEEEEEEEEKEEEEE 94
D E +EE+E+EEEE++++E
Sbjct: 293 DDYSESEDEDEEDEDEEEEEDDDEG 317
Score = 26.9 bits (60), Expect = 1.5
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 72 EKVREKGEEEEEEEEEEKEEEEE 94
EK E+ EE++ E E+++EE+E
Sbjct: 284 EKAEEEEEEDDYSESEDEDEEDE 306
Score = 26.9 bits (60), Expect = 1.5
Identities = 11/26 (42%), Positives = 19/26 (73%)
Query: 70 DTEKVREKGEEEEEEEEEEKEEEEEK 95
D + ++ EE+E+EEEEE ++E +K
Sbjct: 294 DYSESEDEDEEDEDEEEEEDDDEGDK 319
Score = 25.4 bits (56), Expect = 5.6
Identities = 9/26 (34%), Positives = 19/26 (73%)
Query: 70 DTEKVREKGEEEEEEEEEEKEEEEEK 95
+ + + E+EE+E+EEE+E+++E
Sbjct: 292 EDDYSESEDEDEEDEDEEEEEDDDEG 317
Score = 24.6 bits (54), Expect = 9.3
Identities = 10/26 (38%), Positives = 19/26 (73%)
Query: 70 DTEKVREKGEEEEEEEEEEKEEEEEK 95
+ E + E+E+EE+E+E+EEE++
Sbjct: 290 EEEDDYSESEDEDEEDEDEEEEEDDD 315
>gnl|CDD|221175 pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polymerase III subunit
Rpc31. RNA polymerase III contains seventeen subunits
in yeasts and in human cells. Twelve of these are akin
to RNA polymerase I or II and the other five are RNA pol
III-specific, and form the functionally distinct groups
(i) Rpc31-Rpc34-Rpc82, and (ii) Rpc37-Rpc53. Rpc31,
Rpc34 and Rpc82 form a cluster of enzyme-specific
subunits that contribute to transcription initiation in
S.cerevisiae and H.sapiens. There is evidence that these
subunits are anchored at or near the N-terminal Zn-fold
of Rpc1, itself prolonged by a highly conserved but RNA
polymerase III-specific domain.
Length = 221
Score = 27.0 bits (60), Expect = 1.5
Identities = 11/19 (57%), Positives = 18/19 (94%)
Query: 76 EKGEEEEEEEEEEKEEEEE 94
++ +E++EEEEEE+EEE+E
Sbjct: 169 DEEDEKDEEEEEEEEEEDE 187
Score = 26.6 bits (59), Expect = 2.0
Identities = 11/23 (47%), Positives = 18/23 (78%)
Query: 72 EKVREKGEEEEEEEEEEKEEEEE 94
+K++E E+ +EE+E+ EEEEE
Sbjct: 158 KKLKELEAEDVDEEDEKDEEEEE 180
Score = 26.6 bits (59), Expect = 2.0
Identities = 14/25 (56%), Positives = 19/25 (76%)
Query: 70 DTEKVREKGEEEEEEEEEEKEEEEE 94
D ++ EK EEEEEEEEEE E+ ++
Sbjct: 167 DVDEEDEKDEEEEEEEEEEDEDFDD 191
Score = 26.3 bits (58), Expect = 2.2
Identities = 10/23 (43%), Positives = 18/23 (78%)
Query: 72 EKVREKGEEEEEEEEEEKEEEEE 94
E+ + EEEEEEEEE+++ +++
Sbjct: 170 EEDEKDEEEEEEEEEEDEDFDDD 192
Score = 26.3 bits (58), Expect = 2.3
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 70 DTEKVREKGEEEEEEEEEEKEEEE 93
+ E ++EEEEEEEE+E+E+
Sbjct: 165 AEDVDEEDEKDEEEEEEEEEEDED 188
Score = 25.9 bits (57), Expect = 3.2
Identities = 9/25 (36%), Positives = 20/25 (80%)
Query: 70 DTEKVREKGEEEEEEEEEEKEEEEE 94
+ ++ E+ EEEEEEE+E+ +++++
Sbjct: 170 EEDEKDEEEEEEEEEEDEDFDDDDD 194
Score = 25.9 bits (57), Expect = 3.5
Identities = 12/24 (50%), Positives = 19/24 (79%)
Query: 72 EKVREKGEEEEEEEEEEKEEEEEK 95
EK ++ E E+ +EE+EK+EEEE+
Sbjct: 157 EKKLKELEAEDVDEEDEKDEEEEE 180
Score = 25.9 bits (57), Expect = 3.8
Identities = 8/25 (32%), Positives = 18/25 (72%)
Query: 70 DTEKVREKGEEEEEEEEEEKEEEEE 94
D + E+ EEEEE+E+ + +++++
Sbjct: 172 DEKDEEEEEEEEEEDEDFDDDDDDD 196
Score = 25.9 bits (57), Expect = 3.9
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 72 EKVREKGEEEEEEEEEEKEEEEE 94
E E +EE+E++EEE+EEEEE
Sbjct: 162 ELEAEDVDEEDEKDEEEEEEEEE 184
Score = 25.5 bits (56), Expect = 4.3
Identities = 9/25 (36%), Positives = 18/25 (72%)
Query: 71 TEKVREKGEEEEEEEEEEKEEEEEK 95
+ + E+ +EE+E+++EEEEE+
Sbjct: 158 KKLKELEAEDVDEEDEKDEEEEEEE 182
Score = 25.5 bits (56), Expect = 5.1
Identities = 11/25 (44%), Positives = 19/25 (76%)
Query: 70 DTEKVREKGEEEEEEEEEEKEEEEE 94
D E +++ EEEEEEEE+E ++++
Sbjct: 169 DEEDEKDEEEEEEEEEEDEDFDDDD 193
Score = 25.1 bits (55), Expect = 5.6
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 68 RRDTEKVREKGEEEEEEEEEEKEEEEE 94
++ E E+E++EEEEE+EEEE+
Sbjct: 160 LKELEAEDVDEEDEKDEEEEEEEEEED 186
Score = 25.1 bits (55), Expect = 5.8
Identities = 14/27 (51%), Positives = 21/27 (77%)
Query: 68 RRDTEKVREKGEEEEEEEEEEKEEEEE 94
+ E V E+ E++EEEEEEE+EE+E+
Sbjct: 162 ELEAEDVDEEDEKDEEEEEEEEEEDED 188
>gnl|CDD|183610 PRK12585, PRK12585, putative monovalent cation/H+ antiporter
subunit G; Reviewed.
Length = 197
Score = 27.0 bits (59), Expect = 1.6
Identities = 12/27 (44%), Positives = 20/27 (74%)
Query: 68 RRDTEKVREKGEEEEEEEEEEKEEEEE 94
R + E+ EK +E E++EE+E+E EE+
Sbjct: 141 RMEWERREEKIDEREDQEEQEREREEQ 167
Score = 26.2 bits (57), Expect = 2.6
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 61 LLESYGYRRDTEKVREKGEEEEEEEEEEKEEEEEK 95
L E + R EK+ E+ ++EE+E E E++ EE+
Sbjct: 138 LEERMEWERREEKIDEREDQEEQEREREEQTIEEQ 172
>gnl|CDD|185046 PRK15090, PRK15090, DNA-binding transcriptional regulator KdgR;
Provisional.
Length = 257
Score = 26.9 bits (60), Expect = 1.6
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 18/60 (30%)
Query: 47 SALGSIFL----PPFLRYLLESYGYRRDTEK--------------VREKGEEEEEEEEEE 88
+A+G + L +R +L ++R TEK VRE+G E+ EE+EE
Sbjct: 142 TAIGKVLLAWRDRDEVREILSGVEFKRSTEKTITSTEALLPVLDQVREQGYGEDNEEQEE 201
>gnl|CDD|117592 pfam09026, Cenp-B_dimeris, Centromere protein B dimerisation
domain. The centromere protein B (CENP-B) dimerisation
domain is composed of two alpha-helices, which are
folded into an antiparallel configuration. Dimerisation
of CENP-B is mediated by this domain, in which monomers
dimerise to form a symmetrical, antiparallel,
four-helix bundle structure with a large hydrophobic
patch in which 23 residues of one monomer form van der
Waals contacts with the other monomer. This CENP-B
dimer configuration may be suitable for capturing two
distant CENP-B boxes during centromeric heterochromatin
formation.
Length = 101
Score = 26.3 bits (57), Expect = 1.7
Identities = 9/40 (22%), Positives = 25/40 (62%)
Query: 56 PFLRYLLESYGYRRDTEKVREKGEEEEEEEEEEKEEEEEK 95
P L +L D+++ + +E+EE+++E+ +E++++
Sbjct: 1 PTLHFLEGEEDSDSDSDEEEDDDDEDEEDDDEDDDEDDDE 40
>gnl|CDD|226998 COG4651, RosB, Kef-type K+ transport system, predicted NAD-binding
component [Inorganic ion transport and metabolism].
Length = 408
Score = 27.0 bits (60), Expect = 1.7
Identities = 22/79 (27%), Positives = 28/79 (35%), Gaps = 12/79 (15%)
Query: 7 FSYGVFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLLESYG 66
G F I AGL + R L AI SI L P L LL+
Sbjct: 342 AQIGEFSFILAGLGIKLNLLPEAG-----RDLVLAGAIL-----SILLNPLLFALLDR-- 389
Query: 67 YRRDTEKVREKGEEEEEEE 85
Y+R E ++E+ E
Sbjct: 390 YQRSAEWLKEQAAESLHTR 408
>gnl|CDD|129416 TIGR00316, cdhC, CO dehydrogenase/CO-methylating acetyl-CoA
synthase complex, beta subunit. Nomenclature follows
the description for Methanosarcina thermophila. The
CO-methylating acetyl-CoA synthase is considered the
defining enzyme of the Wood-Ljungdahl pathway, used for
acetate catabolism by sulfate reducing bacteria but for
acetate biosynthesis by acetogenic bacteria such as
oorella thermoacetica (f. Clostridium thermoaceticum)
[Energy metabolism, Chemoautotrophy].
Length = 458
Score = 26.7 bits (59), Expect = 1.7
Identities = 10/22 (45%), Positives = 11/22 (50%)
Query: 74 VREKGEEEEEEEEEEKEEEEEK 95
EE EEEEE + EE E
Sbjct: 401 REVDEEEIEEEEEAMQPEEMEM 422
Score = 26.7 bits (59), Expect = 1.8
Identities = 17/37 (45%), Positives = 20/37 (54%)
Query: 58 LRYLLESYGYRRDTEKVREKGEEEEEEEEEEKEEEEE 94
LR L+ G+ VRE EEE EEEEE + EE
Sbjct: 384 LRKFLKEKGHPVVKRVVREVDEEEIEEEEEAMQPEEM 420
>gnl|CDD|182070 PRK09776, PRK09776, putative diguanylate cyclase; Provisional.
Length = 1092
Score = 26.9 bits (60), Expect = 1.7
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 37 GLANGIAISGSALGSIFLPPFLRYLLE 63
GL+ + +S + L S L PFL LE
Sbjct: 925 GLSIALPLSVAGLSSPTLLPFLLEQLE 951
>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin. Trichoplein
or mitostatin, was first defined as a meiosis-specific
nuclear structural protein. It has since been linked
with mitochondrial movement. It is associated with the
mitochondrial outer membrane, and over-expression leads
to reduction in mitochondrial motility whereas lack of
it enhances mitochondrial movement. The activity appears
to be mediated through binding the mitochondria to the
actin intermediate filaments (IFs).
Length = 349
Score = 26.8 bits (60), Expect = 1.8
Identities = 14/24 (58%), Positives = 16/24 (66%)
Query: 72 EKVREKGEEEEEEEEEEKEEEEEK 95
E REK E EEE E E +E +EEK
Sbjct: 157 EYQREKAEREEEREAERRERKEEK 180
Score = 25.3 bits (56), Expect = 6.3
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 61 LLESYGYRRDTEKVREKGEEEEEEEEEEKEEEEEK 95
E ++ E++ E E +EE+E E +E+ EK
Sbjct: 88 QEEYEERLQEREQMDEIIERIQEEDEAEAQEKREK 122
>gnl|CDD|221490 pfam12253, CAF1A, Chromatin assembly factor 1 subunit A. The
CAF-1 or chromatin assembly factor-1 consists of three
subunits, and this is the first, or A. The A domain is
uniquely required for the progression of S phase in
mouse cells, independent of its ability to promote
histone deposition but dependent on its ability to
interact with HP1 - heterochromatin protein 1-rich
heterochromatin domains next to centromeres that are
crucial for chromosome segregation during mitosis. This
HP1-CAF-1 interaction module functions as a built-in
replication control for heterochromatin, which, like a
control barrier, has an impact on S-phase progression
in addition to DNA-based checkpoints.
Length = 76
Score = 25.6 bits (57), Expect = 1.8
Identities = 13/31 (41%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Query: 65 YGYRRDTE-KVREKGEEEEEEEEEEKEEEEE 94
Y Y D E + E+GE+ E E+EE++EE+++
Sbjct: 40 YDYDSDAEWEEEEEGEDLESEDEEDEEEDDD 70
>gnl|CDD|240415 PTZ00429, PTZ00429, beta-adaptin; Provisional.
Length = 746
Score = 26.8 bits (59), Expect = 1.8
Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 14/38 (36%)
Query: 53 FLPPFLRYLLESYGYRRDTEKVREKGEEEEEEEEEEKE 90
FLPP YG + +EE+ E+++ E
Sbjct: 597 FLPP--------YGL------ADVELDEEDTEDDDAVE 620
>gnl|CDD|218177 pfam04615, Utp14, Utp14 protein. This protein is found to be part
of a large ribonucleoprotein complex containing the U3
snoRNA. Depletion of the Utp proteins impedes production
of the 18S rRNA, indicating that they are part of the
active pre-rRNA processing complex. This large RNP
complex has been termed the small subunit (SSU)
processome.
Length = 728
Score = 26.9 bits (60), Expect = 1.8
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 68 RRDTEKVREKGEEEEEEEEEEKEEEEEK 95
+ E++R + E EEE +EEE EE +K
Sbjct: 391 DAEIEELRRELEGEEESDEEENEEPSKK 418
Score = 25.0 bits (55), Expect = 7.8
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 71 TEKVREKGEEEEEEEEEEKEEEEEK 95
K+ K EE+E+E+ EEE++
Sbjct: 315 RRKIEGKSVSEEDEDEDSDSEEEDE 339
>gnl|CDD|215544 PLN03029, PLN03029, type-a response regulator protein; Provisional.
Length = 222
Score = 26.5 bits (58), Expect = 1.9
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 73 KVREKGEEEEEEEEEEKEEEEEK 95
K + K +++E +E++EK EE E
Sbjct: 147 KTKSKNQKQENQEKQEKLEESEI 169
>gnl|CDD|148682 pfam07222, PBP_sp32, Proacrosin binding protein sp32. This family
consists of several mammalian specific proacrosin
binding protein sp32 sequences. sp32 is a sperm specific
protein which is known to bind with with 55- and 53-kDa
proacrosins and the 49-kDa acrosin intermediate. The
exact function of sp32 is unclear, it is thought however
that the binding of sp32 to proacrosin may be involved
in packaging the acrosin zymogen into the acrosomal
matrix.
Length = 243
Score = 26.5 bits (58), Expect = 1.9
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 62 LESYGYRRDTEKVREKGEEEEEEEEEEKEEEE 93
L+ Y TE+ + + E+EEEE EEE ++EE
Sbjct: 206 LQEYLQEHKTEEKQPQEEQEEEEVEEEAKQEE 237
Score = 26.2 bits (57), Expect = 3.1
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 72 EKVREKGEEEEEEEEEEKEEEEE 94
EK ++ +EEEE EEE K+EE +
Sbjct: 217 EKQPQEEQEEEEVEEEAKQEEGQ 239
>gnl|CDD|220383 pfam09756, DDRGK, DDRGK domain. This is a family of proteins of
approximately 300 residues, found in plants and
vertebrates. They contain a highly conserved DDRGK
motif.
Length = 189
Score = 26.6 bits (59), Expect = 1.9
Identities = 13/28 (46%), Positives = 21/28 (75%)
Query: 68 RRDTEKVREKGEEEEEEEEEEKEEEEEK 95
+ + ++ E+ EEEE EEE EK++EEE+
Sbjct: 33 KLEEKREGERKEEEELEEEREKKKEEEE 60
Score = 26.2 bits (58), Expect = 2.4
Identities = 14/24 (58%), Positives = 18/24 (75%)
Query: 72 EKVREKGEEEEEEEEEEKEEEEEK 95
E R++ EE EEE E++KEEEE K
Sbjct: 39 EGERKEEEELEEEREKKKEEEERK 62
Score = 25.0 bits (55), Expect = 5.6
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 67 YRRDTEKVREKGEEEEEEEEEEKEEEEEK 95
+ + E E+ +++EEEE +E+EE+ K
Sbjct: 42 RKEEEELEEEREKKKEEEERKEREEQARK 70
Score = 25.0 bits (55), Expect = 6.5
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 63 ESYGYRRDTEKVREKGEEEEEEEEEEKEEEEE 94
+ E+ REK +EEEE +E E++ +E
Sbjct: 40 GERKEEEELEEEREKKKEEEERKEREEQARKE 71
Score = 25.0 bits (55), Expect = 6.6
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 59 RYLLESYGYRRDTEKVREKGEEEEEEEEEEKEEEEEK 95
+ L E R E+ E+ E+++EEEE KE EE+
Sbjct: 32 KKLEEKREGERKEEEELEEEREKKKEEEERKEREEQA 68
Score = 24.7 bits (54), Expect = 8.8
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 72 EKVREKGEEEEEEEEEEKEEEEEK 95
E+ +K EEEE +E EE+ +E++
Sbjct: 50 EEREKKKEEEERKEREEQARKEQE 73
>gnl|CDD|237035 PRK12280, rplW, 50S ribosomal protein L23; Reviewed.
Length = 158
Score = 26.6 bits (59), Expect = 1.9
Identities = 9/29 (31%), Positives = 20/29 (68%)
Query: 67 YRRDTEKVREKGEEEEEEEEEEKEEEEEK 95
+ ++EK +++ +E EE+E K ++E+K
Sbjct: 91 FPEESEKEQKEVSKETEEKEAIKAKKEKK 119
>gnl|CDD|238356 cd00660, Topoisomer_IB_N, Topoisomer_IB_N: N-terminal DNA binding
fragment found in eukaryotic DNA topoisomerase (topo) IB
proteins similar to the monomeric yeast and human topo I
and heterodimeric topo I from Leishmania donvanni. Topo
I enzymes are divided into: topo type IA (bacterial)
and type IB (eukaryotic). Topo I relaxes superhelical
tension in duplex DNA by creating a single-strand nick,
the broken strand can then rotate around the unbroken
strand to remove DNA supercoils and, the nick is
religated, liberating topo I. These enzymes regulate the
topological changes that accompany DNA replication,
transcription and other nuclear processes. Human topo I
is the target of a diverse set of anticancer drugs
including camptothecins (CPTs). CPTs bind to the topo
I-DNA complex and inhibit re-ligation of the
single-strand nick, resulting in the accumulation of
topo I-DNA adducts. In addition to differences in
structure and some biochemical properties,
Trypanosomatid parasite topo I differ from human topo I
in their sensitivity to CPTs and other classical topo I
inhibitors. Trypanosomatid topos I play putative roles
in organizing the kinetoplast DNA network unique to
these parasites. This family may represent more than
one structural domain.
Length = 215
Score = 26.5 bits (59), Expect = 1.9
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 67 YRRDTEKVREKGEEEEEEEEEEKEEEEEK 95
+ + EK + +EE++ +EEKE+ EE
Sbjct: 94 FEEEKEKKKAMSKEEKKAIKEEKEKLEEP 122
>gnl|CDD|235672 PRK06012, flhA, flagellar biosynthesis protein FlhA; Validated.
Length = 697
Score = 26.6 bits (60), Expect = 2.0
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 65 YGYRRDTEKVREKGEEEEEEEEEEKEEEE 93
+R+ + EE EEEE E EEE
Sbjct: 325 RLRKREKKAAELAAEEAEEEEAAEPEEES 353
Score = 24.7 bits (55), Expect = 10.0
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 66 GYRRDTEKVREKGEEEEEEEEEEKEEEEEK 95
YR + + EE EEEE E EE+
Sbjct: 323 AYRLRKREKKAAELAAEEAEEEEAAEPEEE 352
>gnl|CDD|237276 PRK13024, PRK13024, bifunctional preprotein translocase subunit
SecD/SecF; Reviewed.
Length = 755
Score = 26.7 bits (60), Expect = 2.0
Identities = 7/22 (31%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
Query: 4 HFAFSYGVFVGIGAGLSFPPGI 25
+ + G +GA L+ PGI
Sbjct: 301 YIFLTLGALSSLGAVLT-LPGI 321
>gnl|CDD|223692 COG0619, CbiQ, ABC-type cobalt transport system, permease
component CbiQ and related transporters [Inorganic ion
transport and metabolism].
Length = 252
Score = 26.6 bits (59), Expect = 2.0
Identities = 10/63 (15%), Positives = 16/63 (25%)
Query: 5 FAFSYGVFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLLES 64
F VF+ L + + L L + + G L + L F
Sbjct: 26 FLLIILVFLLNDLVLLLIILLLTLLLVVLAKIPLKFLLLLLGFLLLGLLLIAFTNGFSLG 85
Query: 65 YGY 67
Sbjct: 86 PAV 88
>gnl|CDD|218421 pfam05086, Dicty_REP, Dictyostelium (Slime Mold) REP protein. This
family consists of REP proteins from Dictyostelium
(Slime molds). REP protein is likely involved in
transcription regulation and control of DNA replication,
specifically amplification of plasmid at low copy
numbers. The formation of homomultimers may be required
for their regulatory activity.
Length = 910
Score = 26.7 bits (59), Expect = 2.1
Identities = 12/67 (17%), Positives = 32/67 (47%), Gaps = 15/67 (22%)
Query: 27 IVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTEKVREKGEEEEEEEE 86
+V ++ K++ L + + YL+ + D ++ E+++E+E+
Sbjct: 859 LVKNFISKFKELNDLTDLE-------------EYLISQFQENED--DDADEDEDQDEDED 903
Query: 87 EEKEEEE 93
E+++E+E
Sbjct: 904 EDEDEDE 910
>gnl|CDD|217450 pfam03247, Prothymosin, Prothymosin/parathymosin family.
Prothymosin alpha and parathymosin are two ubiquitous
small acidic nuclear proteins that are thought to be
involved in cell cycle progression, proliferation, and
cell differentiation.
Length = 106
Score = 26.1 bits (57), Expect = 2.1
Identities = 15/25 (60%), Positives = 18/25 (72%)
Query: 70 DTEKVREKGEEEEEEEEEEKEEEEE 94
+ E+V E EEEE E EEE+ EEEE
Sbjct: 53 EEEEVDEDDEEEEGEGEEEEGEEEE 77
Score = 24.9 bits (54), Expect = 6.0
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 70 DTEKVREKGEEEEEEEEEEKEEEE 93
D + E+GE EEEE EEE+E E
Sbjct: 58 DEDDEEEEGEGEEEEGEEEEETEG 81
>gnl|CDD|217169 pfam02660, G3P_acyltransf, Glycerol-3-phosphate acyltransferase.
This family of enzymes catalyzes the transfer of an acyl
group from acyl-ACP to glycerol-3-phosphate to form
lysophosphatidic acid.
Length = 178
Score = 26.3 bits (59), Expect = 2.1
Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 7/60 (11%)
Query: 10 GVFVGIGAGLSFPP-------GIFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLL 62
GV +G L+ P ++++ +Y LA+ +A + L YLL
Sbjct: 98 GVATTLGVLLALSPLVALIALAVWLLVLLITRYVSLASLVAALLFPILVWLFGGPLEYLL 157
>gnl|CDD|221581 pfam12446, DUF3682, Protein of unknown function (DUF3682). This
domain family is found in eukaryotes, and is typically
between 125 and 136 amino acids in length.
Length = 133
Score = 26.3 bits (58), Expect = 2.1
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 78 GEEEEEEEEEEKEEEEEK 95
G +EEEE+EEE EK
Sbjct: 90 GTGHTRQEEEEEEEENEK 107
Score = 26.3 bits (58), Expect = 2.1
Identities = 10/17 (58%), Positives = 14/17 (82%)
Query: 76 EKGEEEEEEEEEEKEEE 92
+ EEEEEEEE EK+++
Sbjct: 94 TRQEEEEEEEENEKQQQ 110
>gnl|CDD|218333 pfam04931, DNA_pol_phi, DNA polymerase phi. This family includes
the fifth essential DNA polymerase in yeast EC:2.7.7.7.
Pol5p is localised exclusively to the nucleolus and
binds near or at the enhancer region of rRNA-encoding
DNA repeating units.
Length = 784
Score = 26.8 bits (59), Expect = 2.3
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 70 DTEKVREKGEEEEEEEEEEKEEEEE 94
D E E E+ E E E + E+ EE
Sbjct: 660 DDEDECEAIEDSESESESDGEDGEE 684
>gnl|CDD|220284 pfam09538, FYDLN_acid, Protein of unknown function (FYDLN_acid).
Members of this family are bacterial proteins with a
conserved motif [KR]FYDLN, sometimes flanked by a pair
of CXXC motifs, followed by a long region of low
complexity sequence in which roughly half the residues
are Asp and Glu, including multiple runs of five or
more acidic residues. The function of members of this
family is unknown.
Length = 104
Score = 25.7 bits (57), Expect = 2.4
Identities = 6/28 (21%), Positives = 15/28 (53%)
Query: 67 YRRDTEKVREKGEEEEEEEEEEKEEEEE 94
+ K R + E+ +++++EE+E
Sbjct: 36 VPPEVAKSRAPAADAEDAAKKDEDEEDE 63
Score = 24.6 bits (54), Expect = 6.3
Identities = 7/25 (28%), Positives = 17/25 (68%)
Query: 70 DTEKVREKGEEEEEEEEEEKEEEEE 94
D E +K E+EE+E++ +++++
Sbjct: 49 DAEDAAKKDEDEEDEDDVVLDDDDD 73
>gnl|CDD|151173 pfam10669, Phage_Gp23, Protein gp23 (Bacteriophage A118). This
is the highly conserved family of the major tail
subunit protein.
Length = 121
Score = 26.2 bits (57), Expect = 2.4
Identities = 10/28 (35%), Positives = 19/28 (67%)
Query: 68 RRDTEKVREKGEEEEEEEEEEKEEEEEK 95
R + ++ R+K E E E+ ++E +EE +K
Sbjct: 45 RVEMKEERDKMETEREKRDKESKEERDK 72
>gnl|CDD|185582 PTZ00373, PTZ00373, 60S Acidic ribosomal protein P2; Provisional.
Length = 112
Score = 26.0 bits (57), Expect = 2.4
Identities = 10/18 (55%), Positives = 16/18 (88%)
Query: 77 KGEEEEEEEEEEKEEEEE 94
K E ++EE++EE+EEEE+
Sbjct: 87 KAEAKKEEKKEEEEEEED 104
Score = 25.6 bits (56), Expect = 2.9
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 76 EKGEEEEEEEEEEKEEEEE 94
E ++EE++E+EEEEE
Sbjct: 85 GAKAEAKKEEKKEEEEEEE 103
Score = 25.3 bits (55), Expect = 4.4
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 73 KVREKGEEEEEEEEEEKEE 91
K K EE++EEEEEE+++
Sbjct: 87 KAEAKKEEKKEEEEEEEDD 105
Score = 24.9 bits (54), Expect = 5.8
Identities = 9/24 (37%), Positives = 18/24 (75%)
Query: 70 DTEKVREKGEEEEEEEEEEKEEEE 93
T + + ++EE++EEEE+EE++
Sbjct: 82 ATAGAKAEAKKEEKKEEEEEEEDD 105
Score = 24.1 bits (52), Expect = 9.7
Identities = 10/18 (55%), Positives = 15/18 (83%)
Query: 78 GEEEEEEEEEEKEEEEEK 95
G + E ++EE+KEEEEE+
Sbjct: 85 GAKAEAKKEEKKEEEEEE 102
>gnl|CDD|205206 pfam13025, DUF3886, Protein of unknown function (DUF3886). This
family of proteins is functionally uncharacterized.
This family of proteins is found in bacteria. Proteins
in this family are approximately 90 amino acids in
length. There are two completely conserved L residues
that may be functionally important.
Length = 70
Score = 25.4 bits (56), Expect = 2.5
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 68 RRDTEKVREKGEEEEEEEEEEKEEEEEK 95
+++ + EK EEEEE + E+ +E EK
Sbjct: 26 KKELKAEEEKREEEEEARKREERKEREK 53
Score = 24.2 bits (53), Expect = 6.7
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 72 EKVREKGEEEEEEEEEEKEEEEEK 95
K++ K +E + EEE+ +EEEE +
Sbjct: 20 AKLKAKKKELKAEEEKREEEEEAR 43
>gnl|CDD|129661 TIGR00570, cdk7, CDK-activating kinase assembly factor MAT1. All
proteins in this family for which functions are known
are cyclin dependent protein kinases that are components
of TFIIH, a complex that is involved in nucleotide
excision repair and transcription initiation. Also known
as MAT1 (menage a trois 1). This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 309
Score = 26.3 bits (58), Expect = 2.5
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 69 RDTEKVREKGEEEEEEEEEEKEEEEEK 95
++ EK + EE EE E EKEEEE++
Sbjct: 135 KNKEKSTREQEELEEALEFEKEEEEQR 161
Score = 24.8 bits (54), Expect = 9.9
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 76 EKGEEEEEEEEEEKEEEEEK 95
EK EEE+ +KEEEE++
Sbjct: 154 EKEEEEQRRLLLQKEEEEQQ 173
>gnl|CDD|177433 PHA02608, 67, prohead core protein; Provisional.
Length = 80
Score = 25.5 bits (56), Expect = 2.6
Identities = 6/24 (25%), Positives = 17/24 (70%)
Query: 72 EKVREKGEEEEEEEEEEKEEEEEK 95
V +GEE E+++++E +++++
Sbjct: 41 RSVMIEGEEPEDDDDDEDDDDDDD 64
>gnl|CDD|202096 pfam02029, Caldesmon, Caldesmon.
Length = 431
Score = 26.5 bits (58), Expect = 2.6
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 70 DTEKVREKGEEEEEEEEEEKEEEE 93
+ E V E+ +EE EE EE EE E
Sbjct: 107 ENETVEEEEKEESREEREEVEETE 130
>gnl|CDD|219009 pfam06404, PSK, Phytosulfokine precursor protein (PSK). This
family consists of several plant specific
phytosulfokine precursor proteins. Phytosulfokines, are
active as either a pentapeptide or a C-terminally
truncated tetrapeptide. These compounds were first
isolated because of their ability to stimulate cell
division in somatic embryo cultures of Asparagus
officinalis.
Length = 74
Score = 25.4 bits (56), Expect = 2.8
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 76 EKGEEEEEEEEEEKEEEEE 94
K +E+E E E E EEE
Sbjct: 35 SKVDEDEVVSECEGEGEEE 53
>gnl|CDD|222977 PHA03089, PHA03089, late transcription factor VLTF-4;
Provisional.
Length = 191
Score = 25.9 bits (57), Expect = 2.8
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 71 TEKVREKGEEEEEEEEEEKEEEEE 94
T+K ++K +E+EE E EE +
Sbjct: 64 TKKTKKKKKEKEEVPELAAEELSD 87
>gnl|CDD|219911 pfam08572, PRP3, pre-mRNA processing factor 3 (PRP3). Pre-mRNA
processing factor 3 (PRP3) is a U4/U6-associated
splicing factor. The human PRP3 has been implicated in
autosomal retinitis pigmentosa.
Length = 222
Score = 26.2 bits (58), Expect = 2.9
Identities = 7/29 (24%), Positives = 15/29 (51%)
Query: 67 YRRDTEKVREKGEEEEEEEEEEKEEEEEK 95
+ + E++R + + EEEE +E +
Sbjct: 30 FSQQAEELRREAKLEEEEARISEEAQNAG 58
>gnl|CDD|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742).
This is a family of fungal proteins of unknown function.
Length = 182
Score = 25.8 bits (57), Expect = 2.9
Identities = 6/37 (16%), Positives = 25/37 (67%)
Query: 59 RYLLESYGYRRDTEKVREKGEEEEEEEEEEKEEEEEK 95
++ + ++ +K ++K +++++++ E+K+E+E +
Sbjct: 83 KWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAE 119
>gnl|CDD|217640 pfam03613, EIID-AGA, PTS system mannose/fructose/sorbose family IID
component.
Length = 264
Score = 25.9 bits (58), Expect = 3.1
Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 7/43 (16%)
Query: 37 GLANGIAISGSALGSIF------LPPF-LRYLLESYGYRRDTE 72
+ +A+ G+ LG I + LRY GY+ T+
Sbjct: 121 AIGASLALQGNILGPILFLLLFNIIHLALRYYGLFLGYKLGTK 163
>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family. This
model represent the sugar porter subfamily of the major
facilitator superfamily (pfam00083) [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 481
Score = 26.1 bits (58), Expect = 3.1
Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Query: 48 ALGSIFLPPFLRYLLESYGYRRDTEKVREKGEEEEEEEEEEKEEEEEK 95
LG FLP R+L+ G + K + E++E +E E
Sbjct: 210 FLGLFFLPESPRWLVGK-GRVEEARKSLARLRGTSGEDKELLDELELI 256
>gnl|CDD|221473 pfam12230, PRP21_like_P, Pre-mRNA splicing factor PRP21 like
protein. This domain family is found in eukaryotes,
and is typically between 212 and 238 amino acids in
length. The family is found in association with
pfam01805. There are two completely conserved residues
(W and H) that may be functionally important. PRP21 is
required for assembly of the prespliceosome and it
interacts with U2 snRNP and/or pre-mRNA in the
prespliceosome. This family also contains proteins
similar to PRP21, such as the mammalian SF3a. SF3a also
interacts with U2 snRNP from the prespliceosome,
converting it to its active form.
Length = 230
Score = 25.9 bits (57), Expect = 3.1
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 59 RYLLESYGYRRDTEKVREKGEEEEEEEEEEK 89
Y+LE R + EK ++K E+++EEEEEE+
Sbjct: 17 YYILERAYKRAEWEKHQKKEEQKKEEEEEEE 47
>gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha
subunit (TFIIF-alpha). Transcription initiation factor
IIF, alpha subunit (TFIIF-alpha) or RNA polymerase
II-associating protein 74 (RAP74) is the large subunit
of transcription factor IIF (TFIIF), which is essential
for accurate initiation and stimulates elongation by RNA
polymerase II.
Length = 528
Score = 26.1 bits (57), Expect = 3.2
Identities = 10/17 (58%), Positives = 13/17 (76%)
Query: 76 EKGEEEEEEEEEEKEEE 92
E+ E+ EE EEE+ EEE
Sbjct: 315 EQDEDSEESEEEKNEEE 331
Score = 26.1 bits (57), Expect = 3.4
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 70 DTEKVREKGEEEEEEEEEEKEEEEEK 95
K + +E+ EE EEEK EEE
Sbjct: 308 IPAKPEIEQDEDSEESEEEKNEEEGG 333
Score = 25.3 bits (55), Expect = 5.7
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 72 EKVREKGEEEEEEEEEEKEEEE 93
++ K E E++E+ EE EEE+
Sbjct: 306 PEIPAKPEIEQDEDSEESEEEK 327
Score = 24.9 bits (54), Expect = 8.2
Identities = 10/26 (38%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 72 EKVREKGEEEEEE--EEEEKEEEEEK 95
+ E EE EEE EEE ++ K
Sbjct: 314 IEQDEDSEESEEEKNEEEGGLSKKGK 339
>gnl|CDD|237629 PRK14160, PRK14160, heat shock protein GrpE; Provisional.
Length = 211
Score = 25.9 bits (57), Expect = 3.3
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 71 TEKVREKGEEEEEEEEEEKEEEEEK 95
E + E +E E +EE+K +EE+
Sbjct: 10 HENMEEDCCKENENKEEDKGKEEDL 34
Score = 24.7 bits (54), Expect = 8.8
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 72 EKVREKGEEEEEEEEEEKEEE 92
K +KG+EE+ E EE ++EE
Sbjct: 23 NKEEDKGKEEDLEFEEIEKEE 43
>gnl|CDD|149439 pfam08375, Rpn3_C, Proteasome regulatory subunit C-terminal.
This eukaryotic domain is found at the C-terminus of
26S proteasome regulatory subunits such as the
non-ATPase Rpn3 subunit which is essential for
proteasomal function. It occurs together with the
PCI/PINT domain (pfam01399).
Length = 68
Score = 25.0 bits (55), Expect = 3.3
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 67 YRRDTEKVREKGEEEEEEEEEEKEEEEE 94
+++ EK E E ++ E E KE E
Sbjct: 37 EKKEEEKAEEARERDQLELELAKELSEG 64
>gnl|CDD|233973 TIGR02680, TIGR02680, TIGR02680 family protein. Members of this
protein family belong to a conserved gene four-gene
neighborhood found sporadically in a phylogenetically
broad range of bacteria: Nocardia farcinica,
Symbiobacterium thermophilum, and Streptomyces
avermitilis (Actinobacteria), Geobacillus kaustophilus
(Firmicutes), Azoarcus sp. EbN1 and Ralstonia
solanacearum (Betaproteobacteria). Proteins in this
family average over 1400 amino acids in length
[Hypothetical proteins, Conserved].
Length = 1353
Score = 25.9 bits (57), Expect = 3.4
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 68 RRDTEKVREKGEEEEEEEEEEKEEEEE 94
E+ R + EE+ E + +E E
Sbjct: 951 LATAEEARGRAEEKRAEADATLDERAE 977
>gnl|CDD|129679 TIGR00591, phr2, photolyase PhrII. All proteins in this family for
which functions are known are DNA-photolyases used for
the direct repair of UV irradiation induced DNA damage.
Some repair 6-4 photoproducts while others repair
cyclobutane pyrimidine dimers. This family is based on
the phylogenomic analysis of JA Eisen (1999, Ph.D.
Thesis, Stanford University) [DNA metabolism, DNA
replication, recombination, and repair].
Length = 454
Score = 25.9 bits (57), Expect = 3.4
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 46 GSALGSIFLPPFLRYLLESYGYRRD 70
G+ G I L F+ L + RR+
Sbjct: 225 GTTAGLIMLESFIEKRLCFFRTRRN 249
>gnl|CDD|100109 cd05831, Ribosomal_P1, Ribosomal protein P1. This subfamily
represents the eukaryotic large ribosomal protein P1.
Eukaryotic P1 and P2 are functionally equivalent to the
bacterial protein L7/L12, but are not homologous to
L7/L12. P1 is located in the L12 stalk, with proteins
P2, P0, L11, and 28S rRNA. P1 and P2 are the only
proteins in the ribosome to occur as multimers, always
appearing as sets of heterodimers. Recent data indicate
that eukaryotes have four copies (two heterodimers),
while most archaeal species contain six copies of L12p
(three homodimers) and bacteria may have four or six
copies (two or three homodimers), depending on the
species. Experiments using S. cerevisiae P1 and P2
indicate that P1 proteins are positioned more
internally with limited reactivity in the C-terminal
domains, while P2 proteins seem to be more externally
located and are more likely to interact with other
cellular components. In lower eukaryotes, P1 and P2 are
further subdivided into P1A, P1B, P2A, and P2B, which
form P1A/P2B and P1B/P2A heterodimers. Some plant
species have a third P-protein, called P3, which is not
homologous to P1 and P2. In humans, P1 and P2 are
strongly autoimmunogenic. They play a significant role
in the etiology and pathogenesis of systemic lupus
erythema (SLE). In addition, the ribosome-inactivating
protein trichosanthin (TCS) interacts with human P0,
P1, and P2, with its primary binding site located in
the C-terminal region of P2. TCS inactivates the
ribosome by depurinating a specific adenine in the
sarcin-ricin loop of 28S rRNA.
Length = 103
Score = 25.4 bits (56), Expect = 3.5
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 78 GEEEEEEEEEEKEEEEEK 95
E ++EE+KEEEEE+
Sbjct: 76 AAAAEAKKEEKKEEEEEE 93
Score = 25.0 bits (55), Expect = 4.2
Identities = 7/19 (36%), Positives = 14/19 (73%)
Query: 76 EKGEEEEEEEEEEKEEEEE 94
++EE++EEE+EE ++
Sbjct: 78 AAEAKKEEKKEEEEEESDD 96
Score = 24.2 bits (53), Expect = 8.1
Identities = 7/19 (36%), Positives = 16/19 (84%)
Query: 76 EKGEEEEEEEEEEKEEEEE 94
+ ++EE++EEEE+E +++
Sbjct: 79 AEAKKEEKKEEEEEESDDD 97
Score = 24.2 bits (53), Expect = 8.7
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 71 TEKVREKGEEEEEEEEEEKEEEE 93
E +EE++EEEEE+ +++
Sbjct: 75 AAAAAEAKKEEKKEEEEEESDDD 97
>gnl|CDD|225866 COG3329, COG3329, Predicted permease [General function prediction
only].
Length = 372
Score = 25.9 bits (57), Expect = 3.5
Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 11 VFVGIGAGLSFPPGIF-IVTSYFLKYRGLANGIAISGSALGSIFLP 55
+ + L P I+ ++ Y L G G+ I S L ++ LP
Sbjct: 28 LIAAFKSDLEIPEAIYQALSLYLLLAIGFKGGVEIRNSNLTAMVLP 73
>gnl|CDD|220376 pfam09745, DUF2040, Coiled-coil domain-containing protein 55
(DUF2040). This entry is a conserved domain of
approximately 130 residues of proteins conserved from
fungi to humans. The proteins do contain a coiled-coil
domain, but the function is unknown.
Length = 128
Score = 25.4 bits (56), Expect = 3.5
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 67 YRRDTEKVREKGEEEEEEEEEEKEEEEEK 95
Y++ E+ R+ EEEE+E EE EEE +
Sbjct: 95 YKKQLEENRK--LEEEEKEREELEEENDV 121
Score = 24.3 bits (53), Expect = 9.5
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 71 TEKVREKGEEEEEEEEEEKEEEEEK 95
T +++ EE + EEEEKE EE +
Sbjct: 92 TSAYKKQLEENRKLEEEEKEREELE 116
>gnl|CDD|220379 pfam09750, DRY_EERY, Alternative splicing regulator. This entry
represents the conserved N-terminal region of SWAP
(suppressor-of-white-apricot protein) proteins. This
region contains two highly conserved motifs, viz: DRY
and EERY, which appear to be the sites for alternative
splicing of exons 2 and 3 of the SWAP mRNA. These
proteins are thus thought to be involved in
auto-regulation of pre-mRNA splicing. Most family
members are associated with two Surp domains pfam01805
and an Arginine- serine-rich binding region towards the
C-terminus.
Length = 121
Score = 25.5 bits (56), Expect = 3.5
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 59 RYLLESYGYRRDTEKVREKGEEEEEEEEEEKEEEE 93
R LL+ R + R +EE+E EE EE
Sbjct: 45 RALLDYI--PRGSRNRRPYKTDEEDEAEERFLNEE 77
>gnl|CDD|198151 smart01083, Cir_N, N-terminal domain of CBF1 interacting
co-repressor CIR. This is a 45 residue conserved
region at the N-terminal end of a family of proteins
referred to as CIRs (CBF1-interacting co-repressors).
CBF1 (centromere-binding factor 1) acts as a
transcription factor that causes repression by binding
specifically to GTGGGAA motifs in responsive promoters,
and it requires CIR as a co-repressor. CIR binds to
histone deacetylase and to SAP30 and serves as a linker
between CBF1 and the histone deacetylase complex.
Length = 37
Score = 24.0 bits (53), Expect = 3.8
Identities = 7/21 (33%), Positives = 16/21 (76%)
Query: 75 REKGEEEEEEEEEEKEEEEEK 95
+++ + E++ EEEK++ EE+
Sbjct: 10 QKRVWKAEQKAEEEKKKIEER 30
Score = 23.7 bits (52), Expect = 5.3
Identities = 6/23 (26%), Positives = 16/23 (69%)
Query: 72 EKVREKGEEEEEEEEEEKEEEEE 94
++V + ++ EEE+++ +E +E
Sbjct: 11 KRVWKAEQKAEEEKKKIEERRKE 33
>gnl|CDD|219256 pfam06991, Prp19_bind, Splicing factor, Prp19-binding domain.
This family represents the C-terminus (approximately
300 residues) of proteins that are involved as binding
partners for Prp19 as part of the nuclear pore complex.
The family in Drosophila is necessary for pre-mRNA
splicing, and the human protein has been found in
purifications of the spliceosome. In the past this
family was thought, erroneously, to be associated with
microfibrillin.
Length = 277
Score = 25.6 bits (56), Expect = 3.8
Identities = 14/23 (60%), Positives = 17/23 (73%)
Query: 72 EKVREKGEEEEEEEEEEKEEEEE 94
E+ E GEEEEEE EEE+E + E
Sbjct: 8 EEEDESGEEEEEESEEEEETDSE 30
Score = 25.6 bits (56), Expect = 4.5
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 72 EKVREKGEEEEEEEEEEKEEEEE 94
E + EEEE EEEEE + E++
Sbjct: 10 EDESGEEEEEESEEEEETDSEDD 32
>gnl|CDD|176186 cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl
alcohol dehydrogenases (CAD), members of the medium
chain dehydrogenase/reductase family, reduce
cinnamaldehydes to cinnamyl alcohols in the last step of
monolignal metabolism in plant cells walls. CAD binds 2
zinc ions and is NADPH- dependent. CAD family members
are also found in non-plant species, e.g. in yeast where
they have an aldehyde reductase activity. The medium
chain dehydrogenases/reductase (MDR)/zinc-dependent
alcohol dehydrogenase-like family, which contains the
zinc-dependent alcohol dehydrogenase (ADH-Zn) and
related proteins, is a diverse group of proteins related
to the first identified member, class I mammalian ADH.
MDRs display a broad range of activities and are
distinguished from the smaller short chain
dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
acids of the MDR). The MDR proteins have 2 domains: a
C-terminal NAD(P) binding-Rossmann fold domain of a
beta-alpha form and an N-terminal catalytic domain with
distant homology to GroES. The MDR group contains a
host of activities, including the founding alcohol
dehydrogenase (ADH), quinone reductase, sorbitol
dehydrogenase, formaldehyde dehydrogenase, butanediol
DH, ketose reductase, cinnamyl reductase, and numerous
others. The zinc-dependent alcohol dehydrogenases
(ADHs) catalyze the NAD(P)(H)-dependent interconversion
of alcohols to aldehydes or ketones. Active site zinc
has a catalytic role, while structural zinc aids in
stability. ADH-like proteins typically form dimers
(typically higher plants, mammals) or tetramers (yeast,
bacteria), and generally have 2 tightly bound zinc atoms
per subunit. The active site zinc is coordinated by a
histidine, two cysteines, and a water molecule. The
second zinc seems to play a structural role, affects
subunit interactions, and is typically coordinated by 4
cysteines.
Length = 337
Score = 25.9 bits (58), Expect = 3.8
Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 8/43 (18%)
Query: 10 GVFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSI 52
G V +GA P V + L + +++GS +G
Sbjct: 257 GTLVLVGA----PEEPLPVPPFPL----IFGRKSVAGSLIGGR 291
>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682). The
members of this family are all hypothetical eukaryotic
proteins of unknown function. One member is described as
being an adipocyte-specific protein, but no evidence of
this was found.
Length = 322
Score = 25.7 bits (57), Expect = 3.9
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 6/34 (17%)
Query: 68 RRDTEKVREKGEEE------EEEEEEEKEEEEEK 95
R +K RE+ EE+ EE +EE +E++EEK
Sbjct: 258 LRKVDKTREEEEEKILKAAEEERQEEAQEKKEEK 291
Score = 24.9 bits (55), Expect = 8.8
Identities = 12/24 (50%), Positives = 19/24 (79%)
Query: 72 EKVREKGEEEEEEEEEEKEEEEEK 95
EK+ + EEE +EE +EK+EE++K
Sbjct: 270 EKILKAAEEERQEEAQEKKEEKKK 293
>gnl|CDD|239571 cd03489, Topoisomer_IB_N_LdtopoI_like,
Topoisomer_IB_N_LdtopoI_like: N-terminal DNA binding
fragment found in eukaryotic DNA topoisomerase (topo) IB
proteins similar to the heterodimeric topo I from
Leishmania donvanni. Topo I enzymes are divided into:
topo type IA (bacterial) and type IB (eukaryotic). Topo
I relaxes superhelical tension in duplex DNA by creating
a single-strand nick, the broken strand can then rotate
around the unbroken strand to remove DNA supercoils and,
the nick is religated, liberating topo I. These enzymes
regulate the topological changes that accompany DNA
replication, transcription and other nuclear processes.
Human topo I is the target of a diverse set of
anticancer drugs including camptothecins (CPTs). CPTs
bind to the topo I-DNA complex and inhibit re-ligation
of the single-strand nick, resulting in the accumulation
of topo I-DNA adducts. In addition to differences in
structure and some biochemical properties,
Trypanosomatid parasite topo I differ from human topo I
in their sensitivity to CPTs and other classical topo I
inhibitors. Trypanosomatid topo I play putative roles in
organizing the kinetoplast DNA network unique to these
parasites. This family may represent more than one
structural domain.
Length = 212
Score = 25.6 bits (56), Expect = 3.9
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 69 RDTEKVREKGEEEEEEEEEEKEEEEEK 95
R+ EK + + +EE++ +EEK++E E
Sbjct: 93 REKEKKKSRTKEEKKALKEEKDKEAEP 119
>gnl|CDD|218258 pfam04774, HABP4_PAI-RBP1, Hyaluronan / mRNA binding family.
This family includes the HABP4 family of
hyaluronan-binding proteins, and the PAI-1 mRNA-binding
protein, PAI-RBP1. HABP4 has been observed to bind
hyaluronan (a glucosaminoglycan), but it is not known
whether this is its primary role in vivo. It has also
been observed to bind RNA, but with a lower affinity
than that for hyaluronan. PAI-1 mRNA-binding protein
specifically binds the mRNA of type-1 plasminogen
activator inhibitor (PAI-1), and is thought to be
involved in regulation of mRNA stability. However, in
both cases, the sequence motifs predicted to be
important for ligand binding are not conserved
throughout the family, so it is not known whether
members of this family share a common function.
Length = 106
Score = 25.1 bits (55), Expect = 4.0
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 71 TEKVREKGEEEEEEEEEEKEEEEEK 95
EK + E +E EE+E EEE+
Sbjct: 51 EEKQAVEEEANKEGVVEEEEVEEEE 75
Score = 24.3 bits (53), Expect = 9.4
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 70 DTEKVREKGEEEEEEEEEEKEEEEEK 95
+ + V E+ +E EEEE EEEE+K
Sbjct: 52 EKQAVEEEANKEGVVEEEEVEEEEDK 77
>gnl|CDD|179654 PRK03818, PRK03818, putative transporter; Validated.
Length = 552
Score = 25.6 bits (57), Expect = 4.1
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 14/52 (26%)
Query: 11 VFVGIGAGL---SFP---PGIFIVTSYFLKYRGLANG---IAISGSALGSIF 53
VF+GIG G+ S P PG LK GLA G +A+ +GSI
Sbjct: 374 VFIGIGLGVLLGSIPFFIPGF----PAALKL-GLAGGPLIVALILGRIGSIG 420
>gnl|CDD|235549 PRK05658, PRK05658, RNA polymerase sigma factor RpoD; Validated.
Length = 619
Score = 25.9 bits (58), Expect = 4.1
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 72 EKVREKGEEEEEEEEEEKEEEEE 94
E G E EE +++E EEEEE
Sbjct: 180 EDPAHVGSELEELDDDEDEEEEE 202
>gnl|CDD|226239 COG3716, ManZ, Phosphotransferase system,
mannose/fructose/N-acetylgalactosamine-specific
component IID [Carbohydrate transport and metabolism].
Length = 269
Score = 25.7 bits (57), Expect = 4.1
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 7/39 (17%)
Query: 37 GLANGIAISGSALGSIF-------LPPFLRYLLESYGYR 68
G+ +A+ GS LG I L +R+ YGY+
Sbjct: 127 GIGASLALQGSILGPILFFLLFNILRLAIRWYGLHYGYK 165
>gnl|CDD|220818 pfam10595, UPF0564, Uncharacterized protein family UPF0564. This
family of proteins has no known function. However, one
of the members is annotated as an EF-hand family
protein.
Length = 349
Score = 25.9 bits (57), Expect = 4.1
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 68 RRDTEKVREKGEEEEEEEEEEKEEEEEK 95
+R+ + +R+ EEE + E+KEEE E
Sbjct: 18 KREKKSIRQSKLEEELNKLEKKEEEAEC 45
>gnl|CDD|218218 pfam04702, Vicilin_N, Vicilin N terminal region. This region is
found in plant seed storage proteins, N-terminal to the
Cupin domain (pfam00190). In Macadamia integrifolia,
this region is processed into peptides of approximately
50 amino acids containing a C-X-X-X-C-(10-12)X-C-X-X-X-C
motif. These peptides exhibit antimicrobial activity in
vitro.
Length = 147
Score = 25.4 bits (55), Expect = 4.1
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 69 RDTEKVREKGEEEEEEEEEEKEEEEE 94
R+ + +GE E +E E+E EE
Sbjct: 121 REQYQEHGRGEGENINQEGEEERSEE 146
>gnl|CDD|223802 COG0730, COG0730, Predicted permeases [General function prediction
only].
Length = 258
Score = 25.8 bits (57), Expect = 4.2
Identities = 9/59 (15%), Positives = 20/59 (33%), Gaps = 1/59 (1%)
Query: 9 YGVFVGIGAGLSFPPGIFIVTSYFLKY-RGLANGIAISGSALGSIFLPPFLRYLLESYG 66
G+G G P + ++ LK + I ++ ++ G+ L +
Sbjct: 151 LSGLFGVGGGFGIVPALLLLLLLPLKLAVATSLAIILNTASNGAALYLFALGAVDWPLA 209
>gnl|CDD|224899 COG1988, COG1988, Predicted membrane-bound metal-dependent
hydrolases [General function prediction only].
Length = 190
Score = 25.5 bits (56), Expect = 4.3
Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 8/62 (12%)
Query: 4 HFAFSYGVFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLLE 63
+ FS + + ++F P F+ S+ + + G G++FLP LL
Sbjct: 122 LWPFSDTRWSALLLIITFDPVAFL--SHLIAI-----LFTVLGVLFGAVFLPKG-YLLLL 173
Query: 64 SY 65
Sbjct: 174 ML 175
>gnl|CDD|235370 PRK05244, PRK05244, Der GTPase activator; Provisional.
Length = 177
Score = 25.3 bits (56), Expect = 4.4
Identities = 6/16 (37%), Positives = 13/16 (81%)
Query: 79 EEEEEEEEEEKEEEEE 94
++++EEE E+EE ++
Sbjct: 147 SDDDDEEESEEEESDD 162
>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A
(vWA) domain [General function prediction only].
Length = 4600
Score = 25.7 bits (56), Expect = 4.5
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 68 RRDTEKVREKGEEEEEEEEEEKEEE 92
+ D K E + +E+E+EEE ++
Sbjct: 3938 KEDDNKALEDKDRQEKEDEEEMSDD 3962
>gnl|CDD|219461 pfam07543, PGA2, Protein trafficking PGA2. A Saccharomyces
cerevisiae member of this family (PGA2) is an ER protein
which has been implicated in protein trafficking.
Length = 139
Score = 25.2 bits (55), Expect = 4.6
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 68 RRDTEKVREKGEEEEEEEEEEKEEEEEK 95
R+ KV K E EE+ E++ ++E++
Sbjct: 104 RKRQRKVIRKLLEAEEQLREDQYDDEDE 131
>gnl|CDD|227496 COG5167, VID27, Protein involved in vacuole import and degradation
[Intracellular trafficking and secretion].
Length = 776
Score = 25.7 bits (56), Expect = 4.6
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 70 DTEKVREKGEEEEEEEEEEKEEEEE 94
+ ++ + EE E EEE ++ E+E
Sbjct: 371 EKMEIENRNPEESEHEEEVEDYEDE 395
>gnl|CDD|234456 TIGR04074, bacter_Hen1, 3' terminal RNA ribose
2'-O-methyltransferase Hen1. Members of this protein
family are bacterial Hen1, a 3' terminal RNA ribose
2'-O-methyltransferase that acts in bacterial RNA
repair. All members of the seed alignment belong to a
cassette with the RNA repair enzyme polynucleotide
kinase-phosphatase (Pnkp). Chemically similar Hen1 in
eukaryotes acts instead on small regulatory RNAs
[Transcription, RNA processing, Protein synthesis, tRNA
and rRNA base modification].
Length = 462
Score = 25.7 bits (57), Expect = 4.6
Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
Query: 59 RYLLESYGYRRDTEK---VREKGEEEEEEEEEEKEEEEEK 95
RYL RD ++ E EE E EE +EE EK
Sbjct: 223 RYLKHRRSLARDALARLAEADEAEPEEAETEEAQEEAAEK 262
>gnl|CDD|201810 pfam01466, Skp1, Skp1 family, dimerisation domain.
Length = 78
Score = 24.8 bits (55), Expect = 4.8
Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 4/29 (13%)
Query: 69 RDTEKVRE----KGEEEEEEEEEEKEEEE 93
+ E++RE + + EEEEE ++E E
Sbjct: 46 KTPEEIREIFGIENDFTPEEEEEIRKENE 74
>gnl|CDD|214818 smart00784, SPT2, SPT2 chromatin protein. This entry includes the
Saccharomyces cerevisiae protein SPT2 which is a
chromatin protein involved in transcriptional
regulation.
Length = 106
Score = 25.0 bits (55), Expect = 4.8
Identities = 11/17 (64%), Positives = 12/17 (70%)
Query: 79 EEEEEEEEEEKEEEEEK 95
E+ EEE EKEEE EK
Sbjct: 84 LEDREEERLEKEEEREK 100
Score = 24.3 bits (53), Expect = 8.9
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 75 REKGEEEEEEEEEEKEEEEEK 95
R + EEE E+EE+ E+ +
Sbjct: 83 RLEDREEERLEKEEEREKRAR 103
>gnl|CDD|216790 pfam01925, TauE, Sulfite exporter TauE/SafE. This is a family of
integral membrane proteins where the alignment appears
to contain two duplicated modules of three transmembrane
helices. The proteins are involved in the transport of
anions across the cytoplasmic membrane during taurine
metabolism as an exporter of sulfoacetate. This family
used to be known as DUF81.
Length = 236
Score = 25.6 bits (57), Expect = 4.8
Identities = 7/47 (14%), Positives = 13/47 (27%), Gaps = 1/47 (2%)
Query: 9 YGVFVGIGAGLSFPPGIFIVTSY-FLKYRGLANGIAISGSALGSIFL 54
GIG G P + + K + + + S +
Sbjct: 138 LSGLFGIGGGFLLVPALLYLLGLPLKKAVATSLAVFLVSSLAALLGY 184
>gnl|CDD|111875 pfam03032, Brevenin, Brevenin/esculentin/gaegurin/rugosin family.
This family contains a number of defence peptides
secreted from the skin of amphibians, including the
opiate-like dermorphins and deltorphins, and the
antimicrobial dermoseptins and temporins. The alignment
for this family includes the signal peptide.
Length = 46
Score = 24.2 bits (53), Expect = 4.9
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 76 EKGEEEEEEEEEEKEEEEE 94
EK E+EEE E+EE+ EE+
Sbjct: 24 EKREDEEENEDEEEGEEQS 42
Score = 23.8 bits (52), Expect = 5.4
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 72 EKVREKGEEEEEEEEEEKEEEEEK 95
E+ + + EEE E+EEE +E+ E K
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEVK 45
>gnl|CDD|215180 PLN02316, PLN02316, synthase/transferase.
Length = 1036
Score = 25.6 bits (56), Expect = 5.0
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 57 FLRYLLESYGYRRDTEKVREKGEEEEEEEEEEKEEEEEK 95
F +LLE RR+ EK+ ++ E E + EE++ EEEK
Sbjct: 246 FEDFLLEEK--RRELEKLAKEEAERERQAEEQRRREEEK 282
>gnl|CDD|237549 PRK13897, PRK13897, type IV secretion system component VirD4;
Provisional.
Length = 606
Score = 25.5 bits (56), Expect = 5.0
Identities = 11/46 (23%), Positives = 19/46 (41%)
Query: 49 LGSIFLPPFLRYLLESYGYRRDTEKVREKGEEEEEEEEEEKEEEEE 94
L F+P Y + E E EE+EE+ +E+++
Sbjct: 561 LPPTFVPTQEPYDPRANNNEASEETETITVPENNEEDEEDDDEDDD 606
>gnl|CDD|227446 COG5116, RPN2, 26S proteasome regulatory complex component
[Posttranslational modification, protein turnover,
chaperones].
Length = 926
Score = 25.7 bits (56), Expect = 5.1
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 68 RRDTEKVREKGEEEEEEEEEEKEEEEEK 95
R +K +EKG ++E + E E E
Sbjct: 795 ARAKQKPKEKGPNDKEIKIESPSVETEG 822
>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family. Emg1 and Nop14 are novel
proteins whose interaction is required for the
maturation of the 18S rRNA and for 40S ribosome
production.
Length = 809
Score = 25.3 bits (56), Expect = 5.2
Identities = 12/26 (46%), Positives = 20/26 (76%)
Query: 70 DTEKVREKGEEEEEEEEEEKEEEEEK 95
D E+ E + ++E++EEE+EEE+EK
Sbjct: 353 DEEEDEEDEDSDDEDDEEEEEEEKEK 378
Score = 25.3 bits (56), Expect = 6.8
Identities = 10/26 (38%), Positives = 19/26 (73%)
Query: 70 DTEKVREKGEEEEEEEEEEKEEEEEK 95
D + E+ +EE+E+ ++E +EEEE+
Sbjct: 348 DVDLSDEEEDEEDEDSDDEDDEEEEE 373
Score = 25.3 bits (56), Expect = 6.8
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 75 REKGEEEEEEEEEEKEEEEEK 95
R K EEE +EE E+ ++ E
Sbjct: 256 RTKTEEELAKEEAERLKKLEA 276
Score = 24.6 bits (54), Expect = 9.6
Identities = 9/20 (45%), Positives = 18/20 (90%)
Query: 76 EKGEEEEEEEEEEKEEEEEK 95
++ ++E++EEEE+EE+E+K
Sbjct: 360 DEDSDDEDDEEEEEEEKEKK 379
Score = 24.6 bits (54), Expect = 9.6
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 66 GYRRDTEKVREKGEEEEEEEEEEKEEEEE 94
+ D + G+ EE+EEEEE ++E
Sbjct: 305 EFEPDDDDNFGLGQGEEDEEEEEDGVDDE 333
>gnl|CDD|219408 pfam07423, DUF1510, Protein of unknown function (DUF1510). This
family consists of several hypothetical bacterial
proteins of around 200 residues in length. The function
of this family is unknown.
Length = 214
Score = 25.5 bits (56), Expect = 5.3
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 70 DTEKVREKGEEEEEEEEEEKEEEEEK 95
+ + + E+EE +E EKE EE+
Sbjct: 89 EESEEENEEEDEESSDENEKETEEKT 114
Score = 24.7 bits (54), Expect = 8.6
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 70 DTEKVREKGEEEEEEEEEEKEEEEE 94
+K + E+EE EEE E+E+EE
Sbjct: 78 KEDKGDAEKEDEESEEENEEEDEES 102
>gnl|CDD|221333 pfam11942, Spt5_N, Spt5 transcription elongation factor, acidic
N-terminal. This is the very acidic N-terminal region
of the early transcription elongation factor Spt5. The
Spt5-Spt4 complex regulates early transcription
elongation by RNA polymerase II and has an imputed role
in pre-mRNA processing via its physical association
with mRNA capping enzymes. The actual function of this
N-terminal domain is not known although it is
dispensable for binding to Spt4.
Length = 92
Score = 24.7 bits (54), Expect = 5.3
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 76 EKGEEEEEEEEEEKEEEEE 94
E +EEEEEEEEE + E+
Sbjct: 7 EVDDEEEEEEEEEDDLEDL 25
>gnl|CDD|222948 PHA02941, PHA02941, hypothetical protein; Provisional.
Length = 356
Score = 25.3 bits (55), Expect = 5.4
Identities = 10/17 (58%), Positives = 15/17 (88%)
Query: 79 EEEEEEEEEEKEEEEEK 95
EE +E++EEE+ EEEE+
Sbjct: 333 EETQEQQEEEENEEEEE 349
>gnl|CDD|205480 pfam13300, DUF4078, Domain of unknown function (DUF4078). This
family is found from fungi to humans, but its exact
function is not known.
Length = 88
Score = 24.5 bits (54), Expect = 5.4
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 68 RRDTEKVREKGEEEEEEEEEEKEEEEEK 95
R +TE+ R++ EE +E+ + EE +K
Sbjct: 56 REETERERKEREERKEKRKRAIEERRKK 83
>gnl|CDD|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular
trafficking and secretion].
Length = 526
Score = 25.6 bits (56), Expect = 5.4
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 51 SIFLPPFLRYLLESYGYRRDTEKVREKGEEEEEEEEEEKEEE 92
S F+P RY + G R +++R + EE++ E ++K EE
Sbjct: 3 SRFVPEARRYNFKGKG-RFSADELRRRREEQQVELRKQKREE 43
>gnl|CDD|223266 COG0188, GyrA, Type IIA topoisomerase (DNA gyrase/topo II,
topoisomerase IV), A subunit [DNA replication,
recombination, and repair].
Length = 804
Score = 25.3 bits (56), Expect = 5.5
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 58 LRYLLESYGYRRDTEKVREKGEEEEEEEEEEKEE 91
L + + +G R TE V E+ +E E+E+ +E+
Sbjct: 471 LLEIKKKFGDERRTEIVEEEEDEIEDEDLIAEED 504
>gnl|CDD|219882 pfam08524, rRNA_processing, rRNA processing. This is a family of
proteins that are involved in rRNA processing. In a
localisation study they were found to localise to the
nucleus and nucleolus. The family also includes other
metazoa members from plants to mammals where the
protein has been named BR22 and is associated with
TTF-1, thyroid transcription factor 1. In the lungs,
the family binds TTF-1 to form a complex which
influences the expression of the key lung surfactant
protein-B (SP-B) and -C (SP-C), the small hydrophobic
surfactant proteins that maintain surface tension in
alveoli.
Length = 150
Score = 25.2 bits (55), Expect = 5.5
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 73 KVREKGEEEEEEEEEEKEEEEEK 95
K+ EK E ++ + E++E+E K
Sbjct: 73 KLDEKKEIAKQRKREQREKELAK 95
>gnl|CDD|100111 cd05833, Ribosomal_P2, Ribosomal protein P2. This subfamily
represents the eukaryotic large ribosomal protein P2.
Eukaryotic P1 and P2 are functionally equivalent to the
bacterial protein L7/L12, but are not homologous to
L7/L12. P2 is located in the L12 stalk, with proteins
P1, P0, L11, and 28S rRNA. P1 and P2 are the only
proteins in the ribosome to occur as multimers, always
appearing as sets of heterodimers. Recent data indicate
that eukaryotes have four copies (two heterodimers),
while most archaeal species contain six copies of L12p
(three homodimers). Bacteria may have four or six copies
of L7/L12 (two or three homodimers) depending on the
species. Experiments using S. cerevisiae P1 and P2
indicate that P1 proteins are positioned more internally
with limited reactivity in the C-terminal domains, while
P2 proteins seem to be more externally located and are
more likely to interact with other cellular components.
In lower eukaryotes, P1 and P2 are further subdivided
into P1A, P1B, P2A, and P2B, which form P1A/P2B and
P1B/P2A heterodimers. Some plants have a third
P-protein, called P3, which is not homologous to P1 and
P2. In humans, P1 and P2 are strongly autoimmunogenic.
They play a significant role in the etiology and
pathogenesis of systemic lupus erythema (SLE). In
addition, the ribosome-inactivating protein
trichosanthin (TCS) interacts with human P0, P1, and P2,
with its primary binding site in the C-terminal region
of P2. TCS inactivates the ribosome by depurinating a
specific adenine in the sarcin-ricin loop of 28S rRNA.
Length = 109
Score = 24.9 bits (55), Expect = 5.7
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 76 EKGEEEEEEEEEEKEEEEE 94
++EE++EE EEE +
Sbjct: 82 AAAAAKKEEKKEESEEESD 100
>gnl|CDD|203043 pfam04546, Sigma70_ner, Sigma-70, non-essential region. The
domain is found in the primary vegetative sigma factor.
The function of this domain is unclear and can be
removed without loss of function.
Length = 211
Score = 25.2 bits (56), Expect = 5.7
Identities = 8/25 (32%), Positives = 17/25 (68%)
Query: 70 DTEKVREKGEEEEEEEEEEKEEEEE 94
E+ E ++++E+E+E+ EEE +
Sbjct: 48 LDEEDLEDDDDDDEDEDEDDEEEAD 72
>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional.
Length = 509
Score = 25.3 bits (56), Expect = 5.9
Identities = 6/26 (23%), Positives = 17/26 (65%)
Query: 70 DTEKVREKGEEEEEEEEEEKEEEEEK 95
+ + + ++ ++E+EE+KE +E +
Sbjct: 154 EDDDEDDDDDDVDDEDEEKKEAKELE 179
>gnl|CDD|221641 pfam12569, NARP1, NMDA receptor-regulated protein 1. This domain
family is found in eukaryotes, and is approximately 40
amino acids in length. The family is found in
association with pfam07719, pfam00515. There is a single
completely conserved residue L that may be functionally
important. NARP1 is the mammalian homologue of a yeast
N-terminal acetyltransferase that regulates entry into
the G(0) phase of the cell cycle.
Length = 516
Score = 25.3 bits (56), Expect = 6.0
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 77 KGEEEEEEEEEEKEEEEEK 95
K E++ E+EE EK ++K
Sbjct: 420 KAEKKAEKEEAEKAAAKKK 438
>gnl|CDD|235505 PRK05563, PRK05563, DNA polymerase III subunits gamma and tau;
Validated.
Length = 559
Score = 25.2 bits (56), Expect = 6.1
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 69 RDTEKVREKGEEEEEEEEEEKEEEEE 94
R+ + K EEEEEEEEEE E
Sbjct: 520 REEFLQKHKNEEEEEEEEEELPLIPE 545
>gnl|CDD|224159 COG1238, COG1238, Predicted membrane protein [Function unknown].
Length = 161
Score = 24.9 bits (55), Expect = 6.1
Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 8/67 (11%)
Query: 9 YGVFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLLESYGYR 68
YGV+ + + L + + + +L+ L + +FL RYLL +
Sbjct: 103 YGVWTLLLSWLPPIGDVLTLLAGWLRLNFL--------PFILLVFLGKAARYLLLAALTL 154
Query: 69 RDTEKVR 75
E+ R
Sbjct: 155 LGGERFR 161
>gnl|CDD|220605 pfam10156, Med17, Subunit 17 of Mediator complex. This Mediator
complex subunit was formerly known as Srb4 in yeasts or
Trap80 in Drosophila and human. The Med17 subunit is
located within the head domain and is essential for
cell viability to the extent that a mutant strain of
cerevisiae lacking it shows all RNA polymerase
II-dependent transcription ceasing at non-permissive
temperatures.
Length = 454
Score = 25.4 bits (56), Expect = 6.2
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 68 RRDTEKVREKGEEEEEEEEEEKEEEEEK 95
R + K K + EE +EEE +EE++
Sbjct: 55 REEIAKEAAKIDFSEESDEEEDDEEDDN 82
>gnl|CDD|162338 TIGR01398, FlhA, flagellar biosynthesis protein FlhA. This model
describes flagellar biosynthesis protein FlhA, one of a
large number of genes associated with the biosynthesis
of functional bacterial flagella. Homologs of many such
proteins, including FlhA, function in type III protein
secretion systems. A separate model describes InvA
(Salmonella enterica), LcrD (Yersinia enterocolitica),
HrcV (Xanthomonas), etc., all of which score below the
noise cutoff for this model [Cellular processes,
Chemotaxis and motility].
Length = 678
Score = 25.3 bits (56), Expect = 6.3
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 67 YRRDTEKVREKGEEEEEEEEEEKEEEEE 94
Y R K E+ E + +EE EEEE
Sbjct: 308 YLRRRSKQEEEAAAEAAKAQEEAAEEEE 335
>gnl|CDD|219563 pfam07767, Nop53, Nop53 (60S ribosomal biogenesis). This nucleolar
family of proteins are involved in 60S ribosomal
biogenesis. They are specifically involved in the
processing beyond the 27S stage of 25S rRNA maturation.
This family contains sequences that bear similarity to
the glioma tumour suppressor candidate region gene 2
protein (p60). This protein has been found to interact
with herpes simplex type 1 regulatory proteins.
Length = 387
Score = 25.1 bits (55), Expect = 6.4
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 62 LESYGYRRDTEKVREKGEEEEEEEEEEKEEE 92
E + E +E E++ +E E EE+
Sbjct: 192 FEDHQELLQEEYEKEVKAEKKRQELERVEEK 222
Score = 25.1 bits (55), Expect = 8.3
Identities = 7/24 (29%), Positives = 16/24 (66%)
Query: 72 EKVREKGEEEEEEEEEEKEEEEEK 95
E ++E+ E+E + E++ +E E +
Sbjct: 197 ELLQEEYEKEVKAEKKRQELERVE 220
>gnl|CDD|222447 pfam13904, DUF4207, Domain of unknown function (DUF4207). This
family is found in eukaryotes; it has several conserved
tryptophan residues. The function is not known.
Length = 261
Score = 25.1 bits (55), Expect = 6.4
Identities = 8/21 (38%), Positives = 17/21 (80%)
Query: 75 REKGEEEEEEEEEEKEEEEEK 95
++K EEE ++ ++++EEEE+
Sbjct: 196 QQKREEERRKQRKKQQEEEER 216
Score = 24.7 bits (54), Expect = 7.9
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 68 RRDTEKVREKGEEEEEEEEEEKEEEEEK 95
+ +K +K EE++++E EKE EE +
Sbjct: 97 QAQRQKKLQKLLEEKQKQEREKEREEAE 124
>gnl|CDD|212041 cd10333, LeuT-like_sbd, Aquifex aeolicus LeuT and related proteins;
solute binding domain. LeuT is a bacterial amino acid
transporter with specificity for the hydrophobic amino
acids glycine, alanine, methionine, and leucine. This
subgroup belongs to the solute carrier 6 (SLC6)
transporter family; LeuT has been used as a structural
template for understanding fundamental aspects of SLC6
function. It has an arrangement of 12 transmembrane
helices (TMs), which appears to be a common motif for
eukaryotic and some prokaryotic and archaeal SLC6s: an
inverted topology repeat: TMs1-5 and TMs6-10, and
TMs11-12.
Length = 500
Score = 25.3 bits (56), Expect = 6.6
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 5/38 (13%)
Query: 10 GVFVG-IGAGLSFPPGIFIVT----SYFLKYRGLANGI 42
F IGA S IF + ++F+ YRG++ GI
Sbjct: 133 EFFYSYIGAKPSSFAYIFFLITLALNFFILYRGVSKGI 170
>gnl|CDD|129022 smart00786, SHR3_chaperone, ER membrane protein SH3. This family
of proteins are membrane localised chaperones that are
required for correct plasma membrane localisation of
amino acid permeases (AAPs). Shr3 prevents AAPs proteins
from aggregating and assists in their correct folding.
In the absence of Shr3, AAPs are retained in the ER.
Length = 196
Score = 25.0 bits (55), Expect = 6.6
Identities = 7/31 (22%), Positives = 13/31 (41%)
Query: 65 YGYRRDTEKVREKGEEEEEEEEEEKEEEEEK 95
Y R+D ++ E EE +E ++
Sbjct: 156 YAERKDAKQKEEFAAEERKEALAAAAKKSAT 186
>gnl|CDD|221544 pfam12353, eIF3g, Eukaryotic translation initiation factor 3
subunit G. This domain family is found in eukaryotes,
and is approximately 130 amino acids in length. The
family is found in association with pfam00076. This
family is subunit G of the eukaryotic translation
initiation factor 3. Subunit G is required for eIF3
integrity.
Length = 126
Score = 24.9 bits (55), Expect = 6.7
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 72 EKVREKGEEEEEEEEEEK 89
+ +R EEEEEEEEE+
Sbjct: 80 QLIRNWKEEEEEEEEEKA 97
>gnl|CDD|224559 COG1645, COG1645, Uncharacterized Zn-finger containing protein
[General function prediction only].
Length = 131
Score = 24.7 bits (54), Expect = 6.7
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 74 VREKGEEEEEEEEEEKEEEEEK 95
RE EEEEEE E + +E+ +
Sbjct: 52 YREVVVEEEEEEVEAEVQEQLR 73
>gnl|CDD|198413 cd10431, GHITM, Growth-hormone inducible transmembrane protein.
GHITM appears to be ubiquitiously expressed in mammalian
cells and expression has also been observed in various
cancer cell lines. A cytoprotective function has been
suggested. It is closely related to the BAX inhibitor
(BI)-1 like family of small transmembrane proteins,
which have been shown to have an antiapoptotic effect.
Length = 264
Score = 25.0 bits (55), Expect = 6.8
Identities = 28/84 (33%), Positives = 37/84 (44%), Gaps = 20/84 (23%)
Query: 13 VGIGAGLSFPPGIFIVTSYFLKYRG-LANGIAI-SGSALGSIFLPPFLRYL--LES---Y 65
GI GLS + FL G LA G+ + S+LGS+FLPP L S Y
Sbjct: 143 AGIVGGLSTV-AACAPSEKFLYMGGPLAIGLGVVFASSLGSMFLPPTTALGAGLYSVSLY 201
Query: 66 G----------YRRDTEKVREKGE 79
G Y DT+K+ ++ E
Sbjct: 202 GGLVLFGGFLLY--DTQKIIKRAE 223
>gnl|CDD|217756 pfam03839, Sec62, Translocation protein Sec62.
Length = 217
Score = 25.1 bits (55), Expect = 6.9
Identities = 7/26 (26%), Positives = 15/26 (57%)
Query: 70 DTEKVREKGEEEEEEEEEEKEEEEEK 95
R K +E++EE+K+ +++K
Sbjct: 52 AQMAERVKKLHSQEKKEEKKKPKKKK 77
>gnl|CDD|240597 cd12933, eIF3G, eIF3G domain found in eukaryotic translation
initiation factor 3 subunit G (eIF-3G) and similar
proteins. eIF-3G, also termed eIF-3 subunit 4, or
eIF-3-delta, or eIF3-p42, or eIF3-p44, is the
RNA-binding subunit of eIF3. eIF3 is a large
multi-subunit complex that plays a central role in the
initiation of translation by binding to the 40 S
ribosomal subunit and promoting the binding of
methionyl-tRNAi and mRNA. eIF-3G binds 18 S rRNA and
beta-globin mRNA, and therefore appears to be a
nonspecific RNA-binding protein. Besides, eIF-3G is one
of the cytosolic targets; it interacts with mature
apoptosis-inducing factor (AIF). This family also
includes yeast eIF3-p33, a homolog of vertebrate
eIF-3G; it plays an important role in the initiation
phase of protein synthesis in yeast. It binds both mRNA
and rRNA fragments due to an RNA recognition motif near
its C-terminus.
Length = 114
Score = 24.6 bits (54), Expect = 6.9
Identities = 11/24 (45%), Positives = 18/24 (75%)
Query: 72 EKVREKGEEEEEEEEEEKEEEEEK 95
+ +R K E EEEEEE +K++++ K
Sbjct: 70 QLIRNKEELEEEEEEAKKKKKKGK 93
>gnl|CDD|219746 pfam08208, RNA_polI_A34, DNA-directed RNA polymerase I subunit
RPA34.5. This is a family of proteins conserved from
yeasts to human. Subunit A34.5 of RNA polymerase I is a
non-essential subunit which is thought to help Pol I
overcome topological constraints imposed on ribosomal
DNA during the process of transcription.
Length = 193
Score = 25.1 bits (55), Expect = 6.9
Identities = 9/24 (37%), Positives = 20/24 (83%)
Query: 72 EKVREKGEEEEEEEEEEKEEEEEK 95
EK +K ++E ++E++EK++++EK
Sbjct: 153 EKKEKKKKKEVKKEKKEKKDKKEK 176
>gnl|CDD|221342 pfam11960, DUF3474, Domain of unknown function (DUF3474). This
presumed domain is functionally uncharacterized. This
domain is found in bacteria and eukaryotes. This domain
is typically between 126 to 140 amino acids in length.
This domain is found associated with pfam00487.
Length = 135
Score = 24.6 bits (54), Expect = 7.0
Identities = 11/16 (68%), Positives = 13/16 (81%)
Query: 79 EEEEEEEEEEKEEEEE 94
EEEEEE ++EEEEE
Sbjct: 74 EEEEEENGNDEEEEEE 89
>gnl|CDD|100108 cd04411, Ribosomal_P1_P2_L12p, Ribosomal protein P1, P2, and
L12p. Ribosomal proteins P1 and P2 are the eukaryotic
proteins that are functionally equivalent to bacterial
L7/L12. L12p is the archaeal homolog. Unlike other
ribosomal proteins, the archaeal L12p and eukaryotic P1
and P2 do not share sequence similarity with their
bacterial counterparts. They are part of the ribosomal
stalk (called the L7/L12 stalk in bacteria), along with
28S rRNA and the proteins L11 and P0 in eukaryotes (23S
rRNA, L11, and L10e in archaea). In bacterial
ribosomes, L7/L12 homodimers bind the extended
C-terminal helix of L10 to anchor the L7/L12 molecules
to the ribosome. Eukaryotic P1/P2 heterodimers and
archaeal L12p homodimers are believed to bind the L10
equivalent proteins, eukaryotic P0 and archaeal L10e,
in a similar fashion. P1 and P2 (L12p, L7/L12) are the
only proteins in the ribosome to occur as multimers,
always appearing as sets of dimers. Recent data
indicate that most archaeal species contain six copies
of L12p (three homodimers), while eukaryotes have two
copies each of P1 and P2 (two heterodimers). Bacteria
may have four or six copies (two or three homodimers),
depending on the species. As in bacteria, the stalk is
crucial for binding of initiation, elongation, and
release factors in eukaryotes and archaea.
Length = 105
Score = 24.5 bits (53), Expect = 7.0
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 71 TEKVREKGEEEEEEEEEEKEEEEE 94
E E+ EE +EEE+EEE+E
Sbjct: 75 AAATAEPAEKAEEAKEEEEEEEDE 98
Score = 24.5 bits (53), Expect = 8.8
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 71 TEKVREKGEEEEEEEEEEKEEEE 93
T + EK EE +EEEEEE++E+
Sbjct: 78 TAEPAEKAEEAKEEEEEEEDEDF 100
>gnl|CDD|179118 PRK00771, PRK00771, signal recognition particle protein Srp54;
Provisional.
Length = 437
Score = 25.2 bits (56), Expect = 7.1
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 76 EKGEEEEEEEEEEKEEEE 93
EK EE +EEEEEK+ E+
Sbjct: 297 EKVEEALDEEEEEKDVEK 314
>gnl|CDD|182840 PRK10921, PRK10921, twin-arginine protein translocation system
subunit TatC; Provisional.
Length = 258
Score = 25.1 bits (55), Expect = 7.1
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 73 KVREKGEEEEEEEEEEKEEE 92
K R + EE + E E EK EE
Sbjct: 239 KGRRREEENDAEAESEKTEE 258
>gnl|CDD|217840 pfam04006, Mpp10, Mpp10 protein. This family includes proteins
related to Mpp10 (M phase phosphoprotein 10). The U3
small nucleolar ribonucleoprotein (snoRNP) is required
for three cleavage events that generate the mature 18S
rRNA from the pre-rRNA. In Saccharomyces cerevisiae,
depletion of Mpp10, a U3 snoRNP-specific protein, halts
18S rRNA production and impairs cleavage at the three U3
snoRNP-dependent sites.
Length = 613
Score = 25.3 bits (55), Expect = 7.1
Identities = 10/25 (40%), Positives = 19/25 (76%)
Query: 70 DTEKVREKGEEEEEEEEEEKEEEEE 94
D E V+++ + + EEE+EE +E+E+
Sbjct: 281 DKEAVKKEADSKPEEEDEEDDEQED 305
>gnl|CDD|237875 PRK14974, PRK14974, cell division protein FtsY; Provisional.
Length = 336
Score = 24.9 bits (55), Expect = 7.4
Identities = 18/25 (72%), Positives = 19/25 (76%)
Query: 71 TEKVREKGEEEEEEEEEEKEEEEEK 95
EKV EK EEEEEEE E EEEEE+
Sbjct: 13 VEKVEEKIEEEEEEEAPEAEEEEEE 37
>gnl|CDD|227466 COG5137, COG5137, Histone chaperone involved in gene silencing
[Transcription / Chromatin structure and dynamics].
Length = 279
Score = 25.0 bits (54), Expect = 8.0
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 72 EKVREKGEEEEEEEEEEKEEEEEK 95
V + EE EE + +EEE+E+
Sbjct: 172 PDVDNEEEERLEESDGREEEEDEE 195
>gnl|CDD|221791 pfam12822, DUF3816, Protein of unknown function (DUF3816). This
family of proteins is functionally uncharacterized but
are likely to be membrane transporters. This family of
proteins is found in bacteria and archaea. Proteins in
this family are typically between 177 and 208 amino
acids in length. A subset of this family is associated
with the TM1506 proteins. In this context, transport
through the channel is predicted to be regulated by the
TM1506 protein by either regulating redox potential or
modification of substrates.
Length = 168
Score = 24.5 bits (54), Expect = 8.1
Identities = 15/55 (27%), Positives = 20/55 (36%), Gaps = 3/55 (5%)
Query: 3 SHFAFSYGVFVGIGAGLSFPPGIFIVTSYFLKYRGLAN---GIAISGSALGSIFL 54
S F G F +G +F P I L Y+ L A+ LG+I
Sbjct: 56 SFLLFGGGPFALVGPLANFLPRILFGLIAGLIYKKLRKKTKKRAVLAIILGTILG 110
>gnl|CDD|215009 smart01069, CDC37_C, Cdc37 C terminal domain. Cdc37 is a protein
required for the activity of numerous eukaryotic
protein kinases. This domains corresponds to the C
terminal domain whose function is unclear. It is found
C terminal to the Hsp90 chaperone (Heat shocked protein
90) binding domain pfam08565 and the N terminal kinase
binding domain of Cdc37.
Length = 93
Score = 24.3 bits (53), Expect = 8.1
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 61 LLESYGYRRDTEKVREKGEEEEEEEEEEKEEEEEK 95
L D + +E E+ E EEE EKE+EEE+
Sbjct: 57 LWGVPNAIEDETEFKELQEQYEVEEEAEKEDEEEE 91
>gnl|CDD|227563 COG5238, RNA1, Ran GTPase-activating protein (RanGAP) involved in
mRNA processing and transport [Signal transduction
mechanisms / RNA processing and modification].
Length = 388
Score = 24.9 bits (54), Expect = 8.1
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 74 VREKGEEEEEEEEEEKEEEEE 94
V E+ +EE E+E E +E
Sbjct: 343 VTEESTDEESEDEVEIDESVI 363
>gnl|CDD|165026 PHA02644, PHA02644, hypothetical protein; Provisional.
Length = 112
Score = 24.6 bits (52), Expect = 8.2
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 70 DTEKVREKGEEEEEEEEEEKEEEEEK 95
+ EK EK E E+E++ E+ E E+EK
Sbjct: 64 EDEKKPEKPENEDEKKPEKPENEDEK 89
>gnl|CDD|222863 PHA02540, 61, DNA primase; Provisional.
Length = 337
Score = 25.0 bits (55), Expect = 8.2
Identities = 6/34 (17%), Positives = 16/34 (47%)
Query: 60 YLLESYGYRRDTEKVREKGEEEEEEEEEEKEEEE 93
Y++E + R + + E ++E++ E+
Sbjct: 82 YIMERFKERGTGKGRPVPKPKFEFKKEKKVIEKL 115
>gnl|CDD|225628 COG3086, RseC, Positive regulator of sigma E activity [Signal
transduction mechanisms].
Length = 150
Score = 24.6 bits (54), Expect = 8.4
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 21 FPPGIFIVTSYFLKYRGLANGIAISGSALGSIF 53
FP + + +Y + I I G+ LG
Sbjct: 84 FPLVGLFLGAILAQYLFFSELIVIFGAFLGLAL 116
>gnl|CDD|218598 pfam05470, eIF-3c_N, Eukaryotic translation initiation factor 3
subunit 8 N-terminus. The largest of the mammalian
translation initiation factors, eIF3, consists of at
least eight subunits ranging in mass from 35 to 170 kDa.
eIF3 binds to the 40 S ribosome in an early step of
translation initiation and promotes the binding of
methionyl-tRNAi and mRNA.
Length = 593
Score = 24.8 bits (54), Expect = 8.4
Identities = 10/28 (35%), Positives = 20/28 (71%)
Query: 67 YRRDTEKVREKGEEEEEEEEEEKEEEEE 94
+ D + RE E E+EEEEE+++++++
Sbjct: 124 FEDDITRYREDPESEDEEEEEDEDDDDD 151
>gnl|CDD|227352 COG5019, CDC3, Septin family protein [Cell division and chromosome
partitioning / Cytoskeleton].
Length = 373
Score = 25.0 bits (55), Expect = 8.4
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 67 YRRDTEKVREKGEEEEEEEEEEKEEEEEK 95
++ TEK+REK + EE E+ EE +E
Sbjct: 319 KKKFTEKIREKEKRLEELEQNLIEERKEL 347
>gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function
unknown].
Length = 652
Score = 25.1 bits (55), Expect = 8.5
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 72 EKVREKGEEEEEEEEEEKEEEEEK 95
KV+E+ E+E EE+E E
Sbjct: 395 SKVKEEERPREKEGTEEEERREIT 418
>gnl|CDD|224459 COG1542, COG1542, Uncharacterized conserved protein [Function
unknown].
Length = 593
Score = 24.8 bits (54), Expect = 8.6
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 73 KVREKGEEEEEEEEEEKEEEEE 94
KV+E E E E + EE +
Sbjct: 13 KVKELEERGEAIEVKALTEEFK 34
>gnl|CDD|221121 pfam11489, DUF3210, Protein of unknown function (DUF3210). This is
a family of proteins conserved in yeasts. The function
is not known. The Schizosaccharomyces pombe member is
SPBC18E5.07 and the Saccharomyces cerevisiae member is
AIM21.
Length = 671
Score = 24.9 bits (54), Expect = 8.8
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 72 EKVREKGEEEEEEEEEEKEEEEEK 95
+KV E +E +E++EE E+ +EK
Sbjct: 602 KKVLESPKEPSKEKKEEDEDTKEK 625
>gnl|CDD|237063 PRK12329, nusA, transcription elongation factor NusA; Provisional.
Length = 449
Score = 24.7 bits (54), Expect = 8.8
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 68 RRDTEKVREKGEEEEEEEEEEKEEEEEK 95
R + E ++ + EE E E+ E+ EE+ +
Sbjct: 392 REEEEALQREAEERLEAEQAERAEEDAR 419
>gnl|CDD|236277 PRK08493, PRK08493, NADH dehydrogenase subunit G; Validated.
Length = 819
Score = 24.7 bits (54), Expect = 8.9
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 72 EKVREKGEEEEEEEEEEKEEEEEK 95
EKV E+ E+ E +EE K+E +K
Sbjct: 473 EKVLEQAEQGCENQEEVKKEVPKK 496
>gnl|CDD|219924 pfam08597, eIF3_subunit, Translation initiation factor eIF3
subunit. This is a family of proteins which are
subunits of the eukaryotic translation initiation
factor 3 (eIF3). In yeast it is called Hcr1. The
Saccharomyces cerevisiae protein eIF3j (HCR1) has been
shown to be required for processing of 20S pre-rRNA and
binds to 18S rRNA and eIF3 subunits Rpg1p and Prt1p.
Length = 242
Score = 24.6 bits (54), Expect = 9.0
Identities = 8/25 (32%), Positives = 18/25 (72%)
Query: 70 DTEKVREKGEEEEEEEEEEKEEEEE 94
+ + V++ +EEE+EE+EE++ +
Sbjct: 29 EDDDVKDSWDEEEDEEKEEEKAKVA 53
>gnl|CDD|206063 pfam13892, DBINO, DNA-binding domain. DBINO is a DNA-binding
domain found on global transcription activator SNF2L1
proteins and chromatin re-modelling proteins.
Length = 140
Score = 24.5 bits (54), Expect = 9.2
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 72 EKVREKGEEEEEEEEEEKEEEEE 94
E+ K E+E E+ +KEEE
Sbjct: 85 ERELRKRAEKEALEQAKKEEELR 107
Score = 24.5 bits (54), Expect = 9.6
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 68 RRDTEKVREKGEEEEEEEEEEKEEEEEK 95
+ + E+ + E+E E+ K+EEE +
Sbjct: 80 KNEKEERELRKRAEKEALEQAKKEEELR 107
>gnl|CDD|148051 pfam06213, CobT, Cobalamin biosynthesis protein CobT. This family
consists of several bacterial cobalamin biosynthesis
(CobT) proteins. CobT is involved in the transformation
of precorrin-3 into cobyrinic acid.
Length = 282
Score = 24.8 bits (54), Expect = 9.6
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 69 RDTEKVREKGEEEEEEEEEEKEEEEE 94
+ E G+E E + E+ E+E++
Sbjct: 204 SSMDMAEELGDEPESADSEDNEDEDD 229
>gnl|CDD|115071 pfam06390, NESP55, Neuroendocrine-specific golgi protein P55
(NESP55). This family consists of several mammalian
neuroendocrine-specific golgi protein P55 (NESP55)
sequences. NESP55 is a novel member of the chromogranin
family and is a soluble, acidic, heat-stable secretory
protein that is expressed exclusively in endocrine and
nervous tissues, although less widely than
chromogranins.
Length = 261
Score = 24.8 bits (53), Expect = 9.8
Identities = 13/44 (29%), Positives = 18/44 (40%)
Query: 51 SIFLPPFLRYLLESYGYRRDTEKVREKGEEEEEEEEEEKEEEEE 94
+ P L Y + + D+E E E E E E E E E +
Sbjct: 98 ELARPECLEYDEDDFDTETDSETEPESDIESETEFETEPETEPD 141
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.139 0.389
Gapped
Lambda K H
0.267 0.0812 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,425,311
Number of extensions: 514274
Number of successful extensions: 5812
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4413
Number of HSP's successfully gapped: 981
Length of query: 95
Length of database: 10,937,602
Length adjustment: 62
Effective length of query: 33
Effective length of database: 8,187,654
Effective search space: 270192582
Effective search space used: 270192582
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (24.0 bits)