RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12271
(95 letters)
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia
coli [TaxId: 562]}
Length = 447
Score = 35.4 bits (80), Expect = 4e-04
Identities = 12/72 (16%), Positives = 26/72 (36%), Gaps = 4/72 (5%)
Query: 1 MSSHFAFSYGVFVGIGAGLSFPPGIFIVTS---YFLKYRGLANGIA-ISGSALGSIFLPP 56
+ + + IG + P + + + K G A G + G GS+
Sbjct: 339 PAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASA 398
Query: 57 FLRYLLESYGYR 68
+ Y ++ +G+
Sbjct: 399 IVGYTVDFFGWD 410
>d1wp5a_ b.68.10.1 (A:) Topoisomerase IV subunit A, ParC, C-terminal
domain {Bacillus stearothermophilus [TaxId: 1422]}
Length = 323
Score = 28.8 bits (63), Expect = 0.070
Identities = 13/74 (17%), Positives = 21/74 (28%), Gaps = 15/74 (20%)
Query: 25 IFIVTSYFLKYRGLANGIAISG-SALGSIFLPPFLRYLLESYGYRRDTEKVR--EKGEEE 81
I++ T I S + GS L + +V K E E
Sbjct: 261 IYLQTEKSFIETIKVGDIRFSDRYSNGSFVLDE------------EENGRVISVWKVEAE 308
Query: 82 EEEEEEEKEEEEEK 95
++ E+ E
Sbjct: 309 DKTEKLAAALEHHH 322
>d1ofcx3 a.187.1.1 (X:697-798) HAND domain of the nucleosome
remodeling ATPase ISWI {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 102
Score = 27.1 bits (60), Expect = 0.17
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 53 FLPPFLRYLL--ESYGYRRDTEKVREKGEEEEEEEEEEKEEEEEK 95
F PP L LL E Y +R+ K E + + + EE+ K
Sbjct: 34 FFPPRLFELLDQEIYYFRKTVGYKVPKNTELGSDATKVQREEQRK 78
>d1m9ua_ b.47.1.2 (A:) Elastase {Worm (Eisenia fetida) [TaxId:
6396]}
Length = 241
Score = 27.5 bits (59), Expect = 0.21
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 8 SYGVFVGIGAGLSFPPGIFIVTSYFLK 34
S+ V G+GA L P ++ S +L
Sbjct: 209 SWVVSSGLGACLPDYPSVYTRVSAYLG 235
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain
{Penicillium minioluteum [TaxId: 28574]}
Length = 373
Score = 27.3 bits (60), Expect = 0.24
Identities = 8/34 (23%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 16 GAGLSFPPGIFIVTSYFLKYRG--LANGIAISGS 47
+ L FPPG++ + G +N I ++ +
Sbjct: 30 KSILYFPPGVYWMNQDQSGNSGKLGSNHIRLNSN 63
>d1k4ta3 e.15.1.1 (A:201-430) Eukaryotic DNA topoisomerase I,
N-terminal DNA-binding fragment {Human (Homo sapiens)
[TaxId: 9606]}
Length = 230
Score = 25.1 bits (55), Expect = 1.5
Identities = 6/24 (25%), Positives = 15/24 (62%)
Query: 72 EKVREKGEEEEEEEEEEKEEEEEK 95
E ++ +EE+ + +EE E+ ++
Sbjct: 114 EARKQMSKEEKLKIKEENEKLLKE 137
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding
protein 1 (GBP1), C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 300
Score = 25.1 bits (54), Expect = 1.6
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 68 RRDTEKVREKGEEEEEEEEEEKEEEEEK 95
E R + +E+E K +E+E+
Sbjct: 249 TEKMENDRVQLLKEQERTLALKLQEQEQ 276
Score = 23.9 bits (51), Expect = 3.6
Identities = 5/28 (17%), Positives = 15/28 (53%)
Query: 68 RRDTEKVREKGEEEEEEEEEEKEEEEEK 95
++ E+ +E+E+ +E ++E +
Sbjct: 260 LKEQERTLALKLQEQEQLLKEGFQKESR 287
Score = 23.5 bits (50), Expect = 4.9
Identities = 5/24 (20%), Positives = 12/24 (50%)
Query: 72 EKVREKGEEEEEEEEEEKEEEEEK 95
+++ EK E + + +E+E
Sbjct: 246 KQLTEKMENDRVQLLKEQERTLAL 269
Score = 22.8 bits (48), Expect = 9.8
Identities = 5/29 (17%), Positives = 15/29 (51%)
Query: 67 YRRDTEKVREKGEEEEEEEEEEKEEEEEK 95
R ++ ++ E+ E + + +E+E+
Sbjct: 237 KERSYQEHLKQLTEKMENDRVQLLKEQER 265
>d1oisa_ e.15.1.1 (A:) Eukaryotic DNA topoisomerase I, N-terminal
DNA-binding fragment {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 223
Score = 24.7 bits (54), Expect = 1.8
Identities = 6/29 (20%), Positives = 17/29 (58%)
Query: 67 YRRDTEKVREKGEEEEEEEEEEKEEEEEK 95
++ E+ ++ +E+++ E+E+ EE
Sbjct: 101 FQLQKEQKKQLTSQEKKQIRLEREKFEED 129
>d1us7b_ a.205.1.1 (B:) Hsp90 co-chaperone CDC37 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 201
Score = 24.7 bits (54), Expect = 1.9
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 72 EKVREKGEEEEEEEEEEKEEEEEK 95
E+VR + + E+ +E EEEE K
Sbjct: 114 ERVRGRAKLRIEKAMKEYEEEERK 137
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId:
562]}
Length = 417
Score = 24.3 bits (51), Expect = 2.6
Identities = 8/52 (15%), Positives = 15/52 (28%)
Query: 5 FAFSYGVFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFLPP 56
+ + F + + S + L G+ G L S+F
Sbjct: 350 YLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLS 401
>d3dy8a1 a.211.1.2 (A:182-505) High-affinity cGMP-specific
3',5'-cyclic phosphodiesterase 9A, PDE9A {Human (Homo
sapiens) [TaxId: 9606]}
Length = 324
Score = 24.2 bits (52), Expect = 3.0
Identities = 7/41 (17%), Positives = 17/41 (41%), Gaps = 6/41 (14%)
Query: 53 FLPPFLRYLLESYGYRRDTEKVREKGEEEEEEEEEEKEEEE 93
P +L+ + R++ EE + ++ KE ++
Sbjct: 290 LFPMVEEIMLQPL------WESRDRYEELKRIDDAMKELQK 324
>d2akja4 d.134.1.1 (A:175-345) Ferredoxin--nitrite reductase, NIR
{Spinach (Spinacia oleracea) [TaxId: 3562]}
Length = 171
Score = 24.2 bits (52), Expect = 3.0
Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
Query: 58 LRYLLESYGYRRDTEKVREKGEEEEEEEEEEKEEEEE 94
+ +L++ G E R + E+ E+ E+ EE
Sbjct: 136 MMWLIDELGM----EAFRGEVEKRMPEQVLERASSEE 168
>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato
(Solanum tuberosum) [TaxId: 4113]}
Length = 364
Score = 24.2 bits (51), Expect = 3.0
Identities = 5/27 (18%), Positives = 15/27 (55%)
Query: 67 YRRDTEKVREKGEEEEEEEEEEKEEEE 93
++ +E+ + ++EE E+ ++E
Sbjct: 338 LKKLVSYWKEQAGRKGDDEELEEIQDE 364
>d1gsma2 b.1.1.4 (A:91-206) Mucosal addressin cell adhesion
molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId:
9606]}
Length = 116
Score = 23.4 bits (50), Expect = 4.0
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 69 RDTEKVREKGEEEEEEEEEEKEEEEE 94
++ E + G E +EEEEE + +E+
Sbjct: 44 QELEGAQALGPEVQEEEEEPQGDEDV 69
>d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 138
Score = 23.3 bits (50), Expect = 4.7
Identities = 5/24 (20%), Positives = 10/24 (41%)
Query: 72 EKVREKGEEEEEEEEEEKEEEEEK 95
E +E E E +E+++
Sbjct: 103 ESNKENREAHLAAMLERLQEKDKH 126
>d2crua1 a.5.6.1 (A:8-112) Programmed cell death protein 5 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 105
Score = 23.1 bits (50), Expect = 5.0
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 68 RRDTEKVREKGEEEEEEEEEEKEEEEE 94
+R E + G+ + ++E K E E
Sbjct: 4 QRLAELQAKHGDPGDAAQQEAKHREAE 30
>d1lr1a_ a.155.1.1 (A:) H1 protein (H-NS) {Escherichia coli
[TaxId: 562]}
Length = 57
Score = 22.4 bits (48), Expect = 5.3
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 72 EKVREKGEEEEEEEEEEKEEEEEK 95
EK+ E EEE E EE+
Sbjct: 30 EKLEVVVNERREEESAAAAEVEER 53
Score = 22.1 bits (47), Expect = 8.8
Identities = 9/24 (37%), Positives = 10/24 (41%)
Query: 72 EKVREKGEEEEEEEEEEKEEEEEK 95
E V + EEE E EE K
Sbjct: 33 EVVVNERREEESAAAAEVEERTRK 56
>d1rq0a_ e.38.1.1 (A:) Peptide chain release factor 1, RF1
{Thermotoga maritima [TaxId: 2336]}
Length = 333
Score = 23.5 bits (50), Expect = 5.5
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 69 RDTEKVREKGEEEEEEEEEEKEEEEE 94
++T++ E EE E E E ++ E+E
Sbjct: 43 KETQEFIELLREEGENELEIEKYEKE 68
>d2ayua1 d.305.1.1 (A:70-370) Nucleosome assembly protein, NAP
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 301
Score = 22.7 bits (48), Expect = 9.7
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 72 EKVREKGEEEEEEEEEEKEEEEEK 95
E++ + E E E E +EE+
Sbjct: 79 EQIAKGQEIVESLNETELLVDEEE 102
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.139 0.389
Gapped
Lambda K H
0.267 0.0552 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 379,016
Number of extensions: 17303
Number of successful extensions: 182
Number of sequences better than 10.0: 1
Number of HSP's gapped: 146
Number of HSP's successfully gapped: 60
Length of query: 95
Length of database: 2,407,596
Length adjustment: 58
Effective length of query: 37
Effective length of database: 1,611,256
Effective search space: 59616472
Effective search space used: 59616472
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.3 bits)