Query psy12275
Match_columns 232
No_of_seqs 13 out of 15
Neff 1.2
Searched_HMMs 46136
Date Fri Aug 16 23:09:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12275.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12275hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3619|consensus 93.8 0.03 6.5E-07 56.3 1.6 35 130-164 732-766 (867)
2 KOG3598|consensus 86.9 0.86 1.9E-05 49.7 4.6 13 5-17 2084-2096(2220)
3 PF11498 Activator_LAG-3: Tran 50.6 5.2 0.00011 38.5 0.0 14 53-66 378-392 (468)
4 COG4968 PilE Tfp pilus assembl 35.7 92 0.002 26.0 5.1 42 135-177 10-53 (139)
5 KOG1647|consensus 30.8 50 0.0011 30.1 3.0 31 127-157 171-202 (255)
6 PF15383 TMEM237: Transmembran 27.3 1.3E+02 0.0028 26.5 4.9 47 135-186 146-192 (253)
7 TIGR00870 trp transient-recept 27.2 2.3E+02 0.005 26.6 6.7 37 111-147 494-531 (743)
8 PF02758 PYRIN: PAAD/DAPIN/Pyr 24.2 69 0.0015 22.8 2.2 22 140-161 3-24 (83)
9 cd03332 LMO_FMN L-Lactate 2-mo 23.1 17 0.00036 33.4 -1.4 34 148-181 51-90 (383)
10 PF08668 HDOD: HDOD domain; I 20.7 3.9E+02 0.0084 20.3 6.1 71 112-187 118-188 (196)
11 KOG2762|consensus 20.4 2.1E+02 0.0046 27.8 5.3 62 127-191 145-208 (429)
No 1
>KOG3619|consensus
Probab=93.76 E-value=0.03 Score=56.26 Aligned_cols=35 Identities=51% Similarity=0.779 Sum_probs=31.8
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHh
Q psy12275 130 HNIIVLVEFAIALVTILDQINRESFQRFRLRMAIL 164 (232)
Q Consensus 130 hniivlvefaialvtildqinr~sf~~f~~~~~~~ 164 (232)
-.+-.++|||+||+-.||-||+-||..|.+|.-|+
T Consensus 732 ~h~~~l~eFAlal~~~L~~IN~~SfNnF~LrIGin 766 (867)
T KOG3619|consen 732 SHLGALVEFALALMHKLDEINRHSFNNFELRIGIN 766 (867)
T ss_pred hhHHHHHHHHHHHHHHHHhhhHHhhccceeeecee
Confidence 35778999999999999999999999999998765
No 2
>KOG3598|consensus
Probab=86.90 E-value=0.86 Score=49.68 Aligned_cols=13 Identities=54% Similarity=0.365 Sum_probs=6.1
Q ss_pred hhHHHHHHHHHHH
Q psy12275 5 LSSLLQQQQQQQQ 17 (232)
Q Consensus 5 lssl~qqqqqqqq 17 (232)
.|++..+|..+|+
T Consensus 2084 ~~~~~~qQ~~qQq 2096 (2220)
T KOG3598|consen 2084 VSSETRQQIMQQQ 2096 (2220)
T ss_pred cccchHHHHHHHh
Confidence 3455555444433
No 3
>PF11498 Activator_LAG-3: Transcriptional activator LAG-3; InterPro: IPR021587 The C.elegans Notch pathway, involved in the control of growth, differentiation and patterning in animal development, relies on either of the receptors GLP-1 or LIN-12 []. Both these receptors promote signalling by the recruitment of LAG-3 to target promoters, where it then acts as a transcriptional activator. LAG-3 works as a ternary complex together with the DNA binding protein, LAG-1 []. ; PDB: 2FO1_D.
Probab=50.56 E-value=5.2 Score=38.53 Aligned_cols=14 Identities=29% Similarity=0.456 Sum_probs=0.0
Q ss_pred cccCCC-CCCccCCC
Q psy12275 53 QDDNGN-GRGFDSHS 66 (232)
Q Consensus 53 q~~~~n-grgfd~hs 66 (232)
+...-| |.-|-+|+
T Consensus 378 Qq~qmngg~Q~qt~a 392 (468)
T PF11498_consen 378 QQHQMNGGFQFQTQA 392 (468)
T ss_dssp ---------------
T ss_pred hhhhcccchhhHHHH
Confidence 333344 33476676
No 4
>COG4968 PilE Tfp pilus assembly protein PilE [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=35.66 E-value=92 Score=26.04 Aligned_cols=42 Identities=36% Similarity=0.416 Sum_probs=27.9
Q ss_pred HHHHH--HHHHHHHhhhhhhhhhhHHHHHHHhhhhHhhhhhhhhh
Q psy12275 135 LVEFA--IALVTILDQINRESFQRFRLRMAILDLNVAILGENFKL 177 (232)
Q Consensus 135 lvefa--ialvtildqinr~sf~~f~~~~~~~~lnva~l~~n~~~ 177 (232)
|||.. .|+|.||.-|--||+..|-+|--.... -|.|-+|+.+
T Consensus 10 LIELmIvVaIv~ILa~IAyPSY~~yv~rs~R~~a-~A~L~~~a~~ 53 (139)
T COG4968 10 LIELMIVVAIVGILALIAYPSYQNYVLRSRRSAA-KAALLENAQF 53 (139)
T ss_pred HHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 55554 467889999999999999877544333 3444455444
No 5
>KOG1647|consensus
Probab=30.85 E-value=50 Score=30.12 Aligned_cols=31 Identities=45% Similarity=0.641 Sum_probs=26.3
Q ss_pred hhhhHHHHHHHHHHH-HHHHHhhhhhhhhhhH
Q psy12275 127 QAEHNIIVLVEFAIA-LVTILDQINRESFQRF 157 (232)
Q Consensus 127 qaehniivlvefaia-lvtildqinr~sf~~f 157 (232)
..||+||--+|-.|+ +++=||...||.|-|.
T Consensus 171 AiEhvIIPrlenTi~YI~sELdE~eRedF~RL 202 (255)
T KOG1647|consen 171 AIEHVIIPRLENTIAYIVSELDELEREDFYRL 202 (255)
T ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 469999999998887 5788999999999654
No 6
>PF15383 TMEM237: Transmembrane protein 237
Probab=27.27 E-value=1.3e+02 Score=26.51 Aligned_cols=47 Identities=26% Similarity=0.393 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhHHHHHHHhhhhHhhhhhhhhhhhhchhhHH
Q psy12275 135 LVEFAIALVTILDQINRESFQRFRLRMAILDLNVAILGENFKLLLYLPTYLI 186 (232)
Q Consensus 135 lvefaialvtildqinr~sf~~f~~~~~~~~lnva~l~~n~~~~~~~~~~l~ 186 (232)
.+=+||.+|..+|.++.++|..+.+|.++. ++.++| ..++|+.+++.
T Consensus 146 Y~l~~is~VSafDr~dl~~~~~~~~r~~~~-~~~~~l----ai~ly~~~lvl 192 (253)
T PF15383_consen 146 YFLLAISTVSAFDRYDLAHFSMAHLRGFLK-LDPGAL----AILLYFIALVL 192 (253)
T ss_pred HHHHHHHHHhhhhhHHhhcccHHHHHhhhc-cCchHH----HHHHHHHHHHH
Confidence 345789999999999999998887777643 544443 23445444443
No 7
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=27.21 E-value=2.3e+02 Score=26.55 Aligned_cols=37 Identities=22% Similarity=0.304 Sum_probs=30.1
Q ss_pred cchhhhHHHHhh-hhhhhhhhHHHHHHHHHHHHHHHHh
Q psy12275 111 GTEHVFKTTMVM-EIGKQAEHNIIVLVEFAIALVTILD 147 (232)
Q Consensus 111 gss~~fksTmv~-~igkqaehniivlvefaialvtild 147 (232)
|..-.|...|+. .|.+-.-==+|||+-|++|+..++.
T Consensus 494 Gp~~i~l~~mi~~dl~~F~~i~~v~l~aF~~~~~~l~~ 531 (743)
T TIGR00870 494 GPLQIMIGRMILGDILRFLFIYAVVLFGFACGLNQLYQ 531 (743)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445567777888 8888887788899999999999975
No 8
>PF02758 PYRIN: PAAD/DAPIN/Pyrin domain; InterPro: IPR004020 Pyrin domain was identified as putative protein-protein interaction domain at the N-terminal region of several proteins thought to function in apoptotic and inflammatory signalling pathways. Using secondary structure prediction and potential-based fold recognition methods, the PYRIN domain is predicted to be a member of the six-helix bundle death domain-fold superfamily that includes death domains (DDs), death effector domains (DEDs), and caspase recruitment domains (CARDs). Members of the death domain-fold superfamily are well established mediators of protein-protein interactions found in many proteins involved in apoptosis and inflammation, indicating further that the PYRIN domains serve a similar function. Comparison of a circular dichroism spectrum of the PYRIN domain of CARD7/DEFCAP/NAC/NALP1 with spectra of several proteins known to adopt the death domain-fold provides experimental support for the structure prediction [] It is found in interferon-inducible proteins, pyrin and myeloid cell nuclear differentiation antigen.; PDB: 2DO9_A 2YU0_A 2KN6_A 1UCP_A 2L6A_A 2KM6_A 1PN5_A 2DBG_A 3QF2_B 2HM2_Q.
Probab=24.23 E-value=69 Score=22.79 Aligned_cols=22 Identities=27% Similarity=0.614 Sum_probs=18.3
Q ss_pred HHHHHHHhhhhhhhhhhHHHHH
Q psy12275 140 IALVTILDQINRESFQRFRLRM 161 (232)
Q Consensus 140 ialvtildqinr~sf~~f~~~~ 161 (232)
..|...|+.++.+.|.+|.+.-
T Consensus 3 ~~Ll~~Le~L~~~efk~FK~~L 24 (83)
T PF02758_consen 3 FLLLWYLEELSEEEFKRFKWLL 24 (83)
T ss_dssp HHHHHHHHTS-HHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHh
Confidence 4688999999999999998765
No 9
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=23.15 E-value=17 Score=33.41 Aligned_cols=34 Identities=35% Similarity=0.676 Sum_probs=29.7
Q ss_pred hhhhhhhhhHHHHHHHh------hhhHhhhhhhhhhhhhc
Q psy12275 148 QINRESFQRFRLRMAIL------DLNVAILGENFKLLLYL 181 (232)
Q Consensus 148 qinr~sf~~f~~~~~~~------~lnva~l~~n~~~~~~~ 181 (232)
.-||..|.+++|++-+| |+.+.+||..+++-+++
T Consensus 51 ~~N~~af~~~~l~PRvL~dv~~~dt~t~llG~~~~~P~~i 90 (383)
T cd03332 51 RANRDAFSRWRIVPRMLRGVTERDLSVELFGRTLAAPLLL 90 (383)
T ss_pred HHHHHHHHhcCccccccccCCCCCCceeeCCcccccccee
Confidence 46999999999999988 89999999998876654
No 10
>PF08668 HDOD: HDOD domain; InterPro: IPR013976 This domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity. These members appear to be involved in the nucleic acid metabolism and signal transduction or possibly other functions and are restricted to bacteria, primarily the proteobacteria. The fact that all the highly conserved residues in the HD superfamily are histidines or aspartates suggests that coordination of divalent cations is essential for the activity of these proteins [].; PDB: 1VQR_D 3LJX_A 3P3Q_B 3MEM_A 3M1T_A 3HC1_A 3I7A_A.
Probab=20.67 E-value=3.9e+02 Score=20.30 Aligned_cols=71 Identities=20% Similarity=0.288 Sum_probs=40.3
Q ss_pred chhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHhhhhHhhhhhhhhhhhhchhhHHH
Q psy12275 112 TEHVFKTTMVMEIGKQAEHNIIVLVEFAIALVTILDQINRESFQRFRLRMAILDLNVAILGENFKLLLYLPTYLIF 187 (232)
Q Consensus 112 ss~~fksTmv~~igkqaehniivlvefaialvtildqinr~sf~~f~~~~~~~~lnva~l~~n~~~~~~~~~~l~~ 187 (232)
.+..|.+++.-.||+- +++-.+.-....+.....++..........++..+-.-+|.-+.--..+|..++-
T Consensus 118 ~~~a~~~gLL~~iG~l-----~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~~h~~lg~~l~~~W~lP~~i~~ 188 (196)
T PF08668_consen 118 PDEAYLAGLLHDIGKL-----LLLSLFPEYYEEILQEVKQEPESREEAERELFGVTHAELGAALLRKWGLPEEIVE 188 (196)
T ss_dssp HHHHHHHHHHTTHHHH-----HHHHHCHHHHHHHHHHHHHHCTHHHHHHHHHHSSHHHHHHHHHHHHTT--HHHHH
T ss_pred HHHHHHHHHHHHHhHH-----HHHHHhHHHHHHHHHHHHcCCCCHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHH
Confidence 3788888888888863 2222222223333333344444455555666667777777777666777766653
No 11
>KOG2762|consensus
Probab=20.43 E-value=2.1e+02 Score=27.81 Aligned_cols=62 Identities=27% Similarity=0.424 Sum_probs=41.7
Q ss_pred hhhhHHHHHHHHH--HHHHHHHhhhhhhhhhhHHHHHHHhhhhHhhhhhhhhhhhhchhhHHHHHHH
Q psy12275 127 QAEHNIIVLVEFA--IALVTILDQINRESFQRFRLRMAILDLNVAILGENFKLLLYLPTYLIFFLQQ 191 (232)
Q Consensus 127 qaehniivlvefa--ialvtildqinr~sf~~f~~~~~~~~lnva~l~~n~~~~~~~~~~l~~~~qq 191 (232)
.--|.|.||-=|- .|.+-..--||+---+|+-++++...+-|++- ...|+|.|++|.+.|+.
T Consensus 145 kRiHSIfVLRLFND~fa~lll~~~i~~~l~qkw~~gs~~fSlAvSVK---MNvLLyaPall~~lL~~ 208 (429)
T KOG2762|consen 145 KRIHSIFVLRLFNDPFAMLLLYVAILLFLKQKWLVGSIFFSLAVSVK---MNVLLYAPALLLLLLQN 208 (429)
T ss_pred HHHHHhhhhHHhcchHHHHHHHHHHHHHHHHHHHhHhhhheeehhhh---hhhHHHHHHHHHHHHHh
Confidence 4457888775542 23333333455555677888888888877763 45789999999988764
Done!