Query psy12275
Match_columns 232
No_of_seqs 13 out of 15
Neff 1.2
Searched_HMMs 29240
Date Fri Aug 16 23:09:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12275.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12275hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dbg_A MNDA, myeloid cell nucl 25.5 21 0.00072 27.0 0.9 28 140-168 15-42 (103)
2 1t7s_A BAG-1 cochaperone; stru 15.7 2.9E+02 0.0099 22.0 5.5 65 121-185 56-128 (137)
3 2hi2_A Fimbrial protein; type 14.2 3.5E+02 0.012 19.3 5.4 24 139-162 9-32 (158)
4 3ibv_A Exportin-T; karyopherin 14.2 2.8E+02 0.0097 26.0 5.9 55 132-189 694-748 (980)
5 1ab8_A Adenylyl cyclase; lyase 14.0 42 0.0015 25.5 0.3 33 131-163 98-130 (220)
6 1oqw_A Fimbrial protein; type 13.8 3.6E+02 0.012 19.1 5.4 23 139-161 9-31 (144)
7 1zxu_A AT5G01750 protein; PFAM 13.8 92 0.0031 23.8 2.1 18 136-153 197-214 (217)
8 2yu0_A Interferon-activable pr 12.1 19 0.00064 26.8 -2.2 29 140-169 8-36 (94)
9 3sok_A Fimbrial protein; pilus 10.2 5E+02 0.017 18.7 5.4 46 135-180 3-50 (151)
10 1x4q_A U4/U6 small nuclear rib 10.2 3.6E+02 0.012 19.2 4.2 45 134-188 36-80 (92)
No 1
>2dbg_A MNDA, myeloid cell nuclear differentiation antigen; interferon induction, DNA-binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.51 E-value=21 Score=27.03 Aligned_cols=28 Identities=21% Similarity=0.363 Sum_probs=23.1
Q ss_pred HHHHHHHhhhhhhhhhhHHHHHHHhhhhH
Q psy12275 140 IALVTILDQINRESFQRFRLRMAILDLNV 168 (232)
Q Consensus 140 ialvtildqinr~sf~~f~~~~~~~~lnv 168 (232)
|+|++-|+-||..-|..|.+..+- ||++
T Consensus 15 i~LL~gLE~L~~~~Fk~fK~lL~~-dL~i 42 (103)
T 2dbg_A 15 ILLLKGFELMDDYHFTSIKSLLAY-DLGL 42 (103)
T ss_dssp HHHHTTTTTCCHHHHHHHHHHHHH-HHCC
T ss_pred HHHHHHHhcCCHHHHHHHHHHhcc-ccCC
Confidence 678899999999999999876665 6654
No 2
>1t7s_A BAG-1 cochaperone; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 2.80A {Caenorhabditis elegans} SCOP: a.7.7.1
Probab=15.69 E-value=2.9e+02 Score=22.00 Aligned_cols=65 Identities=28% Similarity=0.291 Sum_probs=52.1
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhh-------hhhHHH-HHHHhhhhHhhhhhhhhhhhhchhhH
Q psy12275 121 VMEIGKQAEHNIIVLVEFAIALVTILDQINRES-------FQRFRL-RMAILDLNVAILGENFKLLLYLPTYL 185 (232)
Q Consensus 121 v~~igkqaehniivlvefaialvtildqinr~s-------f~~f~~-~~~~~~lnva~l~~n~~~~~~~~~~l 185 (232)
+.+.+|..+.-|..+.|++.-+.--||.++-+. |.+-|. |+.+.|-.=+.|..|=++.-.+--|+
T Consensus 56 ~~ea~kkldKrik~~~E~~MK~LE~LDsl~i~~~~t~~~q~~~~R~KRK~lV~~IQ~~L~~~D~l~~~i~~~~ 128 (137)
T 1t7s_A 56 QVEMGKKLEKKVKYFNEEAERHLETLDGMNIITETTPENQAKRNREKRKTLVNGIQTLLNQNDALLRRLQEYQ 128 (137)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTEEECCCCCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHHHHHHHH
Confidence 456677788899999999999999999887655 777765 77888888888999988877766554
No 3
>2hi2_A Fimbrial protein; type IV pilin, fiber-forming protein, membrane protein, DNA protein, contractIle protein, cell adhesion; HET: MEA GLA DT6 HTO; 2.30A {Neisseria gonorrhoeae} PDB: 2hil_A* 1ay2_A* 2pil_A*
Probab=14.24 E-value=3.5e+02 Score=19.26 Aligned_cols=24 Identities=29% Similarity=0.491 Sum_probs=15.8
Q ss_pred HHHHHHHHhhhhhhhhhhHHHHHH
Q psy12275 139 AIALVTILDQINRESFQRFRLRMA 162 (232)
Q Consensus 139 aialvtildqinr~sf~~f~~~~~ 162 (232)
+|+++.||--|--|+|..+.-|..
T Consensus 9 vi~ii~il~~~~~p~~~~~~~~~~ 32 (158)
T 2hi2_A 9 VIAIVGILAAVALPAYQDYTARAQ 32 (158)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345667777777788877655543
No 4
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=14.15 E-value=2.8e+02 Score=26.03 Aligned_cols=55 Identities=16% Similarity=0.286 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHhhhhHhhhhhhhhhhhhchhhHHHHH
Q psy12275 132 IIVLVEFAIALVTILDQINRESFQRFRLRMAILDLNVAILGENFKLLLYLPTYLIFFL 189 (232)
Q Consensus 132 iivlvefaialvtildqinr~sf~~f~~~~~~~~lnva~l~~n~~~~~~~~~~l~~~~ 189 (232)
+.|+.+.+-++..+|+..+..+-.|=+.|.++-.+ |.|||+. ++-++|..+-.++
T Consensus 694 ~~~f~~~~~~il~~l~~~~~~~~irea~~~~~~r~-i~~lg~~--~~p~lp~~i~~ll 748 (980)
T 3ibv_A 694 LASFNKASDEIFLILDRMGFNEDIRGAVRFTSGRI-INVVGPD--MLPKVPQLISILL 748 (980)
T ss_dssp HHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHH-TTTTHHH--HTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH-HHHccHh--HHHHHHHHHHHHH
Confidence 34555666667778888888888887777777666 7788876 6778888777766
No 5
>1ab8_A Adenylyl cyclase; lyase, complex (transferase-inhibitor); HET: FOK; 2.20A {Rattus norvegicus} SCOP: d.58.29.1 PDB: 1azs_B* 1cjk_B* 1cjt_B* 1cju_B* 1cjv_B* 1cs4_B* 1tl7_B* 1u0h_B* 2gvd_B* 2gvz_B* 3c14_B* 3c15_B* 3c16_B* 3e8a_B* 3g82_B* 3maa_B* 1cul_B*
Probab=14.05 E-value=42 Score=25.45 Aligned_cols=33 Identities=55% Similarity=0.801 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHH
Q psy12275 131 NIIVLVEFAIALVTILDQINRESFQRFRLRMAI 163 (232)
Q Consensus 131 niivlvefaialvtildqinr~sf~~f~~~~~~ 163 (232)
...-.+.+|+++...++.+|.....++++|..|
T Consensus 98 ~a~~a~~~Al~~~~~l~~~~~~~~~~l~~rIGI 130 (220)
T 1ab8_A 98 HIGTMVEFAYALVGKLDAINKHSFNDFKLRVGI 130 (220)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTTCCCCCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCceEEEEEE
Confidence 355678999999999999998877777777655
No 6
>1oqw_A Fimbrial protein; type IV pilin, fiber-forming protein, adhesion, pseudomonas aerugionosa, PAK pilin, cell adhesion; 2.00A {Pseudomonas aeruginosa} SCOP: d.24.1.1
Probab=13.83 E-value=3.6e+02 Score=19.14 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=15.5
Q ss_pred HHHHHHHHhhhhhhhhhhHHHHH
Q psy12275 139 AIALVTILDQINRESFQRFRLRM 161 (232)
Q Consensus 139 aialvtildqinr~sf~~f~~~~ 161 (232)
+|+++.||--|--|+|..+.-+.
T Consensus 9 vi~Ii~il~~ia~p~~~~~~~~~ 31 (144)
T 1oqw_A 9 VVAIIGILAAIAIPQYQNYVARS 31 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777778887765544
No 7
>1zxu_A AT5G01750 protein; PFAM PF01167, TULP, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 1.70A {Arabidopsis thaliana} SCOP: d.23.1.2 PDB: 2q4m_A
Probab=13.81 E-value=92 Score=23.84 Aligned_cols=18 Identities=50% Similarity=0.779 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhhhhh
Q psy12275 136 VEFAIALVTILDQINRES 153 (232)
Q Consensus 136 vefaialvtildqinr~s 153 (232)
+-|++|+|.+||.++.++
T Consensus 197 ~aliialvv~iD~~~~~~ 214 (217)
T 1zxu_A 197 YAFIASLVVILDDVNRED 214 (217)
T ss_dssp HHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHhhhhc
No 8
>2yu0_A Interferon-activable protein 205; PAAD_dapin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=12.15 E-value=19 Score=26.84 Aligned_cols=29 Identities=38% Similarity=0.529 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhhhhhhhHHHHHHHhhhhHh
Q psy12275 140 IALVTILDQINRESFQRFRLRMAILDLNVA 169 (232)
Q Consensus 140 ialvtildqinr~sf~~f~~~~~~~~lnva 169 (232)
|+|++-|+-||..-|..|.+..+- ||++.
T Consensus 8 i~LL~gLE~l~~~~Fk~fK~lL~~-dL~i~ 36 (94)
T 2yu0_A 8 IVLLRGLECINKHYFSLFKSLLAR-DLNLE 36 (94)
T ss_dssp CCTTTTTTTSCHHHHHHHHHHHHT-TTCCC
T ss_pred hhHHHHHhcCCHHHHHHHHHHhcc-ccCCC
No 9
>3sok_A Fimbrial protein; pilus subunit, extracellular, cell adhesion; 2.30A {Dichelobacter nodosus}
Probab=10.17 E-value=5e+02 Score=18.74 Aligned_cols=46 Identities=15% Similarity=0.203 Sum_probs=0.0
Q ss_pred HHH--HHHHHHHHHhhhhhhhhhhHHHHHHHhhhhHhhhhhhhhhhhh
Q psy12275 135 LVE--FAIALVTILDQINRESFQRFRLRMAILDLNVAILGENFKLLLY 180 (232)
Q Consensus 135 lve--faialvtildqinr~sf~~f~~~~~~~~lnva~l~~n~~~~~~ 180 (232)
|+| ++|+++.||--|--|+|.++.-+......--.+-.-...+..|
T Consensus 3 LiEllvviaIigiLaaia~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 50 (151)
T 3sok_A 3 LIELMIVVAIIGILAAFAIPAYNDYIARSQAAEGLTLADGLKVRISDH 50 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 10
>1x4q_A U4/U6 small nuclear ribonucleoprotein PRP3; PWI domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=10.16 E-value=3.6e+02 Score=19.19 Aligned_cols=45 Identities=13% Similarity=-0.012 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhHHHHHHHhhhhHhhhhhhhhhhhhchhhHHHH
Q psy12275 134 VLVEFAIALVTILDQINRESFQRFRLRMAILDLNVAILGENFKLLLYLPTYLIFF 188 (232)
Q Consensus 134 vlvefaialvtildqinr~sf~~f~~~~~~~~lnva~l~~n~~~~~~~~~~l~~~ 188 (232)
+||+|+++++. ....-+..+.+|....-++--.|...|-..|+++
T Consensus 36 ~lVd~i~~~l~----------~~~dpk~l~~~L~~fLd~~a~~Fv~eLW~lL~~a 80 (92)
T 1x4q_A 36 TVVTAALNCVG----------KGMDKKKAADHLKPFLDDSTLRFVDKLFEAVEEG 80 (92)
T ss_dssp HHHHHHHHHHH----------TTCCHHHHHHHHTTTTGGGTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH----------cCCCHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Done!