Query psy12275
Match_columns 232
No_of_seqs 13 out of 15
Neff 1.2
Searched_HMMs 13730
Date Fri Aug 16 23:09:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12275.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/12275hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2q4ma1 d.23.1.2 (A:24-212) Hy 61.2 1.7 0.00012 31.5 1.8 15 137-151 175-189 (189)
2 d1t7sa_ a.7.7.1 (A:) BAG-famil 32.1 41 0.003 24.9 5.5 65 121-185 56-128 (129)
3 d1vcfa1 c.1.4.1 (A:23-332) Iso 25.4 1 7.4E-05 33.0 -4.7 31 150-180 2-40 (310)
4 d1azsb_ d.58.29.1 (B:) Adenyly 17.4 16 0.0012 25.8 0.5 33 132-164 91-123 (199)
5 d2pila_ d.24.1.1 (A:) Pilin Gc 13.2 1.4E+02 0.01 17.9 5.6 22 139-160 9-30 (158)
6 d1p4ca_ c.1.4.1 (A:) Membrane- 11.8 3.6 0.00026 31.0 -4.7 34 148-181 35-74 (353)
7 d1kbia1 c.1.4.1 (A:98-511) Fla 10.9 5 0.00036 32.0 -4.3 34 148-181 58-97 (414)
8 d1tb3a1 c.1.4.1 (A:1-349) Hydr 9.9 5.1 0.00037 31.1 -4.5 34 148-181 35-74 (349)
9 d1ucpa_ a.77.1.5 (A:) Apoptosi 9.6 80 0.0058 20.6 2.2 20 141-160 7-26 (91)
10 d1goxa_ c.1.4.1 (A:) Glycolate 9.3 5.7 0.00041 30.4 -4.4 34 148-181 36-75 (359)
No 1
>d2q4ma1 d.23.1.2 (A:24-212) Hypothetical protein At5g01750 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=61.17 E-value=1.7 Score=31.52 Aligned_cols=15 Identities=53% Similarity=0.868 Sum_probs=13.2
Q ss_pred HHHHHHHHHHhhhhh
Q psy12275 137 EFAIALVTILDQINR 151 (232)
Q Consensus 137 efaialvtildqinr 151 (232)
-|++|||.+||.|||
T Consensus 175 ali~alvv~lD~i~~ 189 (189)
T d2q4ma1 175 AFIASLVVILDDVNR 189 (189)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhC
Confidence 367899999999997
No 2
>d1t7sa_ a.7.7.1 (A:) BAG-family molecular chaperon regulator-1, BAG1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}
Probab=32.10 E-value=41 Score=24.90 Aligned_cols=65 Identities=28% Similarity=0.302 Sum_probs=52.2
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHhhhhh-------hhhhhHHH-HHHHhhhhHhhhhhhhhhhhhchhhH
Q psy12275 121 VMEIGKQAEHNIIVLVEFAIALVTILDQINR-------ESFQRFRL-RMAILDLNVAILGENFKLLLYLPTYL 185 (232)
Q Consensus 121 v~~igkqaehniivlvefaialvtildqinr-------~sf~~f~~-~~~~~~lnva~l~~n~~~~~~~~~~l 185 (232)
.-|.++..+.-|-...|.+.-+.--||.++- ++|.+-|+ |+...|-+=+.|.+|=++.-.+--|+
T Consensus 56 ~~eal~kl~Krik~~~E~~Mk~LEtLDsl~l~~~~~~ee~~~~~R~kRK~LV~~iQ~~L~~~D~l~~~i~~~~ 128 (129)
T d1t7sa_ 56 QVEMGKKLEKKVKYFNEEAERHLETLDGMNIITETTPENQAKRNREKRKTLVNGIQTLLNQNDALLRRLQEYQ 128 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTEEECCCCCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcccCcHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhc
Confidence 4566777888999999999999999999887 78998886 67777777888888888776655543
No 3
>d1vcfa1 c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-isomerase {Thermus thermophilus [TaxId: 274]}
Probab=25.44 E-value=1 Score=33.02 Aligned_cols=31 Identities=32% Similarity=0.570 Sum_probs=24.5
Q ss_pred hhhhhhhHHHHHHHh--------hhhHhhhhhhhhhhhh
Q psy12275 150 NRESFQRFRLRMAIL--------DLNVAILGENFKLLLY 180 (232)
Q Consensus 150 nr~sf~~f~~~~~~~--------~lnva~l~~n~~~~~~ 180 (232)
|+..|.||+|+.-+| ||.+.++|..+++-+.
T Consensus 2 n~~~f~~~~~~p~~L~~~d~~~vDlst~~~G~~l~~Pi~ 40 (310)
T d1vcfa1 2 TTTGLEGFRLRYQALAGLALSEVDLTTPFLGKTLKAPFL 40 (310)
T ss_dssp CCCSGGGEEECCCTTCCCCGGGCCCCEEETTEEESSSEE
T ss_pred CcccccceEEEcccCCCCCcccCcCCeEECCEEcCCCEE
Confidence 889999999998777 7778888877665443
No 4
>d1azsb_ d.58.29.1 (B:) Adenylyl cyclase IIC1, domain C2a {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=17.44 E-value=16 Score=25.78 Aligned_cols=33 Identities=55% Similarity=0.758 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHh
Q psy12275 132 IIVLVEFAIALVTILDQINRESFQRFRLRMAIL 164 (232)
Q Consensus 132 iivlvefaialvtildqinr~sf~~f~~~~~~~ 164 (232)
+--.|++|+++...++.++++...++++|..|.
T Consensus 91 ~~~av~~a~~~~~~~~~~~~~~~~~l~~rIGIh 123 (199)
T d1azsb_ 91 IGTMVEFAYALVGKLDAINKHSFNDFKLRVGIN 123 (199)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEE
T ss_pred HHHHHHHHHHHHHHhhhccccCCCCeeEEeeee
Confidence 455789999999999999999998888887664
No 5
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=13.23 E-value=1.4e+02 Score=17.91 Aligned_cols=22 Identities=32% Similarity=0.549 Sum_probs=15.6
Q ss_pred HHHHHHHHhhhhhhhhhhHHHH
Q psy12275 139 AIALVTILDQINRESFQRFRLR 160 (232)
Q Consensus 139 aialvtildqinr~sf~~f~~~ 160 (232)
.||++.||--|-=|+|.+++-+
T Consensus 9 ViaIIgILaaia~P~~~~~~~~ 30 (158)
T d2pila_ 9 VIAIVGILAAVALPAYQDYTAR 30 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777778888777654
No 6
>d1p4ca_ c.1.4.1 (A:) Membrane-associated (S)-mandelate dehydrogenase {Pseudomonas putida [TaxId: 303]}
Probab=11.77 E-value=3.6 Score=31.01 Aligned_cols=34 Identities=26% Similarity=0.507 Sum_probs=26.0
Q ss_pred hhhhhhhhhHHHHHHH------hhhhHhhhhhhhhhhhhc
Q psy12275 148 QINRESFQRFRLRMAI------LDLNVAILGENFKLLLYL 181 (232)
Q Consensus 148 qinr~sf~~f~~~~~~------~~lnva~l~~n~~~~~~~ 181 (232)
.-||+.|.+++|+.-+ .|+.+.+||.++.+-+|.
T Consensus 35 ~~N~~aFd~i~l~pr~L~d~~~idlst~~lGk~ls~Pi~I 74 (353)
T d1p4ca_ 35 KHNRDVFQQWRFKPKRLVDVSRRSLQAEVLGKRQSMPLLI 74 (353)
T ss_dssp HHHHHGGGGEEECCCCSCCCSSCBCCEEETTEEESSSEEE
T ss_pred HHHHHHHHhCcEEcccccCCCCCCCceEECCcCccCceee
Confidence 4589999999998766 466677888888766554
No 7
>d1kbia1 c.1.4.1 (A:98-511) Flavocytochrome b2, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=10.93 E-value=5 Score=31.97 Aligned_cols=34 Identities=24% Similarity=0.571 Sum_probs=27.0
Q ss_pred hhhhhhhhhHHHHHHHh------hhhHhhhhhhhhhhhhc
Q psy12275 148 QINRESFQRFRLRMAIL------DLNVAILGENFKLLLYL 181 (232)
Q Consensus 148 qinr~sf~~f~~~~~~~------~lnva~l~~n~~~~~~~ 181 (232)
.-||..|.+++|+.-+| |+.+.+||..+++-+++
T Consensus 58 ~~N~~aFd~i~l~Pr~L~dvs~iDlst~~lG~~l~~P~~I 97 (414)
T d1kbia1 58 RENHNAYHRIFFKPKILVDVRKVDISTDMLGSHVDVPFYV 97 (414)
T ss_dssp HHHHHGGGGCEECCCCSCCCSSCBCCEEETTEEESSSEEE
T ss_pred HHHHHHHHhceeeccccCCCcCCCCceeECCccCCCCEEE
Confidence 45999999999988765 67778888887776665
No 8
>d1tb3a1 c.1.4.1 (A:1-349) Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=9.88 E-value=5.1 Score=31.06 Aligned_cols=34 Identities=29% Similarity=0.457 Sum_probs=25.4
Q ss_pred hhhhhhhhhHHHHHHHh------hhhHhhhhhhhhhhhhc
Q psy12275 148 QINRESFQRFRLRMAIL------DLNVAILGENFKLLLYL 181 (232)
Q Consensus 148 qinr~sf~~f~~~~~~~------~lnva~l~~n~~~~~~~ 181 (232)
.-|+.+|.+++|+.-+| |+.+.+||.++.+-++.
T Consensus 35 ~~N~~aFd~i~l~pr~L~d~~~idlst~~lG~~l~~P~~I 74 (349)
T d1tb3a1 35 SENIAAFKRIRLRPRYLRDMSKVDTRTTIQGQEISAPICI 74 (349)
T ss_dssp HHHHHHHHHCCBCCCCSSCCSSCBCCEEETTEEESSSEEE
T ss_pred HHHHHHHHhccEEcccccCCCCCCCceeECCcCccceEEE
Confidence 35899999999987653 67778888877665443
No 9
>d1ucpa_ a.77.1.5 (A:) Apoptosis-associated speck-like protein Asc {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.61 E-value=80 Score=20.56 Aligned_cols=20 Identities=25% Similarity=0.712 Sum_probs=17.3
Q ss_pred HHHHHHhhhhhhhhhhHHHH
Q psy12275 141 ALVTILDQINRESFQRFRLR 160 (232)
Q Consensus 141 alvtildqinr~sf~~f~~~ 160 (232)
+|...|+.++.+.|.+|.+.
T Consensus 7 ~Ll~~Le~L~~~ElkkFK~~ 26 (91)
T d1ucpa_ 7 AILDALENLTAEELKKFKLK 26 (91)
T ss_dssp HHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHccHHHHHHHHHH
Confidence 47788999999999999864
No 10
>d1goxa_ c.1.4.1 (A:) Glycolate oxidase {Spinach (Spinacia oleracea) [TaxId: 3562]}
Probab=9.29 E-value=5.7 Score=30.45 Aligned_cols=34 Identities=32% Similarity=0.560 Sum_probs=26.0
Q ss_pred hhhhhhhhhHHHHHHHh------hhhHhhhhhhhhhhhhc
Q psy12275 148 QINRESFQRFRLRMAIL------DLNVAILGENFKLLLYL 181 (232)
Q Consensus 148 qinr~sf~~f~~~~~~~------~lnva~l~~n~~~~~~~ 181 (232)
.-||.+|.+++|+..+| |+.+.+||..+.+-++.
T Consensus 36 ~~N~~~Fd~i~l~pr~L~d~~~iDlst~~lG~~~~~P~~I 75 (359)
T d1goxa_ 36 AENRNAFSRILFRPRILIDVTNIDMTTTILGFKISMPIMI 75 (359)
T ss_dssp HHHHHGGGGEEECCCCSCCCSCCBCCEEETTEEESSSEEE
T ss_pred HHHHHHHHhcceecccccCCCCCCCceeECCcccCCceee
Confidence 46899999999998774 66677888877665554
Done!