RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12275
(232 letters)
>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175).
Length = 820
Score = 53.4 bits (129), Expect = 3e-08
Identities = 25/107 (23%), Positives = 37/107 (34%), Gaps = 25/107 (23%)
Query: 4 ELSSLLQQQQQ------QQQQQQQQQQQQQQQQQQHRQQQKQHIKLDTGTEHDCVQDDNG 57
L L++QQ + Q+Q Q+ +QQ QQ + Q Q G Q G
Sbjct: 592 GLGETLREQQGLSDETFRDLQEQFNAQRGEQQGQQGQGGQGQ------GQPGQQGQQGQG 645
Query: 58 NGRGFDSHSGANFILQQQQQQQQQQQQQQQQQQQQQQQHRHRQQQKQ 104
Q QQ Q Q Q ++QQ + +Q+
Sbjct: 646 QQ-------------QGQQGQGGQGGQGSLAERQQALRDELGRQRGG 679
Score = 53.0 bits (128), Expect = 3e-08
Identities = 29/103 (28%), Positives = 37/103 (35%), Gaps = 10/103 (9%)
Query: 9 LQQQQQQQQQQQQQQQQQQQQQQQHRQQQKQHIKLDTGTEHDCVQDDNGNGRGFDSHSGA 68
LQ Q Q Q + QQ + + R+QQ L T D + N G
Sbjct: 573 LQVTQGGQGGQSEMQQAMEGLGETLREQQG----LSDETFRDLQEQFNAQRGEQQGQQG- 627
Query: 69 NFILQQQQQQQQQQQQQQQQQQQQQQQHRHRQQQKQHIKLDKG 111
Q Q Q Q QQ QQ Q QQQ + + Q L +
Sbjct: 628 -----QGGQGQGQPGQQGQQGQGQQQGQQGQGGQGGQGSLAER 665
Score = 49.9 bits (120), Expect = 3e-07
Identities = 28/104 (26%), Positives = 38/104 (36%), Gaps = 6/104 (5%)
Query: 1 MTAELSSLLQQQQQQQQQQQQQQQQQQQQQQQHRQQQKQHIKLDTGTEHDCVQDDNGNGR 60
+ +L +++ Q Q Q Q + QQ + ++Q L T D + N
Sbjct: 562 LLEQLQQMMENLQVTQGGQGGQSEMQQAMEGLGETLREQQ-GLSDETFRDLQEQFNAQRG 620
Query: 61 GFDSHSGANFILQQQQQQQQQQQQQQQQQQQQQQQHRHRQQQKQ 104
G Q Q Q Q QQ QQ Q QQQ Q Q Q
Sbjct: 621 EQQGQQG-----QGGQGQGQPGQQGQQGQGQQQGQQGQGGQGGQ 659
Score = 41.4 bits (98), Expect = 3e-04
Identities = 28/115 (24%), Positives = 35/115 (30%), Gaps = 22/115 (19%)
Query: 10 QQQQQQQQQQQQQQQQQQQQQQQHRQQQKQHIKLDTGTEHDCVQDDNGNGRGFDSHSGAN 69
QQ QQ Q Q Q ++QQ + +Q L + GR + GA
Sbjct: 647 QQGQQGQGGQGGQGSLAERQQALRDELGRQRGGLPGMGGEAGEAARDALGRAGRAMGGAE 706
Query: 70 FILQQQQ----------------------QQQQQQQQQQQQQQQQQQQHRHRQQQ 102
L Q + QQQ QQQ Q QQQ R
Sbjct: 707 EALGQGDLAEAVDRQGRALEALREGARALGEAMAQQQGQQQGGQGQQQGRQGGNG 761
Score = 39.1 bits (92), Expect = 0.001
Identities = 15/31 (48%), Positives = 16/31 (51%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQRTMSEQ 220
Q QQ Q Q Q Q QQ QQ Q QQ+ Q
Sbjct: 623 QGQQGQGGQGQGQPGQQGQQGQGQQQGQQGQ 653
Score = 38.7 bits (91), Expect = 0.002
Identities = 14/31 (45%), Positives = 15/31 (48%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQRTMSEQ 220
Q Q Q Q QQ QQ Q QQQ QQ +
Sbjct: 627 GQGGQGQGQPGQQGQQGQGQQQGQQGQGGQG 657
Score = 38.0 bits (89), Expect = 0.003
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 188 FLQQQQQQQQQQQQQQQQQQQQQQQQQRTMSEQ 220
LQ+Q Q+ +QQ QQ Q Q Q Q +Q
Sbjct: 610 DLQEQFNAQRGEQQGQQGQGGQGQGQPGQQGQQ 642
Score = 38.0 bits (89), Expect = 0.003
Identities = 14/31 (45%), Positives = 15/31 (48%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQRTMSEQ 220
Q Q Q Q QQ QQ Q QQQ QQ +
Sbjct: 628 QGGQGQGQPGQQGQQGQGQQQGQQGQGGQGG 658
Score = 37.6 bits (88), Expect = 0.004
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQRTMSEQ 220
Q QQ QQ Q QQQ QQ Q Q Q +++E+
Sbjct: 635 QPGQQGQQGQGQQQGQQGQGGQGGQGSLAER 665
Score = 37.6 bits (88), Expect = 0.004
Identities = 15/31 (48%), Positives = 15/31 (48%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQRTMSEQ 220
Q Q Q QQ QQ Q QQQ QQ Q Q
Sbjct: 629 GGQGQGQPGQQGQQGQGQQQGQQGQGGQGGQ 659
Score = 37.6 bits (88), Expect = 0.005
Identities = 14/29 (48%), Positives = 14/29 (48%)
Query: 189 LQQQQQQQQQQQQQQQQQQQQQQQQQRTM 217
Q Q QQ QQ Q QQQ QQ Q Q
Sbjct: 631 QGQGQPGQQGQQGQGQQQGQQGQGGQGGQ 659
Score = 37.2 bits (87), Expect = 0.005
Identities = 14/31 (45%), Positives = 15/31 (48%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQRTMSEQ 220
Q Q Q QQ QQ Q QQQ QQ Q +
Sbjct: 631 QGQGQPGQQGQQGQGQQQGQQGQGGQGGQGS 661
Score = 36.8 bits (86), Expect = 0.007
Identities = 14/25 (56%), Positives = 14/25 (56%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQ 214
QQ QQ Q Q Q Q QQ QQ Q Q
Sbjct: 622 QQGQQGQGGQGQGQPGQQGQQGQGQ 646
Score = 36.4 bits (85), Expect = 0.009
Identities = 15/31 (48%), Positives = 15/31 (48%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQRTMSEQ 220
Q Q QQ QQ Q QQQ QQ Q Q S
Sbjct: 633 QGQPGQQGQQGQGQQQGQQGQGGQGGQGSLA 663
Score = 36.4 bits (85), Expect = 0.010
Identities = 13/25 (52%), Positives = 14/25 (56%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQ 214
+QQ QQ Q Q Q Q QQ QQ Q
Sbjct: 621 EQQGQQGQGGQGQGQPGQQGQQGQG 645
Score = 36.0 bits (84), Expect = 0.012
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQRTMSEQ 220
Q+ +QQ QQ Q Q Q Q QQ QQ +Q
Sbjct: 618 QRGEQQGQQGQGGQGQGQPGQQGQQGQGQQQ 648
Score = 36.0 bits (84), Expect = 0.016
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQRTMSEQ 220
Q Q QQQ QQ Q Q Q ++Q+ + ++
Sbjct: 642 QGQGQQQGQQGQGGQGGQGSLAERQQALRDE 672
Score = 35.6 bits (83), Expect = 0.020
Identities = 24/101 (23%), Positives = 38/101 (37%), Gaps = 19/101 (18%)
Query: 11 QQQQQQQQQQQQQQQQQQQQQQHRQQQKQHIKLDTGTEHDCVQDDNGNGRGFDSHSGANF 70
+Q Q+ QQ Q Q + QQ Q + D +++ +GR + A
Sbjct: 513 AEQAQRNPQQGDQPPDQGNSMELTQQDLQRMM-------DRIEELMESGR----RAEAQQ 561
Query: 71 ILQQ--------QQQQQQQQQQQQQQQQQQQQQHRHRQQQK 103
+L+Q Q Q Q Q + QQ + R+QQ
Sbjct: 562 LLEQLQQMMENLQVTQGGQGGQSEMQQAMEGLGETLREQQG 602
Score = 35.3 bits (82), Expect = 0.024
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQRTMSEQ 220
QQQ QQ Q Q Q ++QQ + + Q
Sbjct: 646 QQQGQQGQGGQGGQGSLAERQQALRDELGRQ 676
Score = 34.9 bits (81), Expect = 0.030
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 187 FFLQQQQQQQQQQQQQQQQQQQQQQQQQ 214
F Q+Q Q+ +QQ QQ Q Q Q Q
Sbjct: 608 FRDLQEQFNAQRGEQQGQQGQGGQGQGQ 635
Score = 34.1 bits (79), Expect = 0.054
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQRTMSEQ 220
+ Q+Q Q+ +QQ QQ Q Q Q +Q
Sbjct: 609 RDLQEQFNAQRGEQQGQQGQGGQGQGQPGQQ 639
Score = 34.1 bits (79), Expect = 0.059
Identities = 27/145 (18%), Positives = 33/145 (22%), Gaps = 53/145 (36%)
Query: 4 ELSSLLQQQQQQQQQQQQQQQQQ------------------------------------- 26
+L+ Q+ QQ Q Q
Sbjct: 511 QLAEQAQRNPQQGDQPPDQGNSMELTQQDLQRMMDRIEELMESGRRAEAQQLLEQLQQMM 570
Query: 27 ------QQQQQQHRQQQKQHIKLDT----------GTEHDCVQDDNGNGRGFDSHSGANF 70
Q Q + Q+ L T D + N G
Sbjct: 571 ENLQVTQGGQGGQSEMQQAMEGLGETLREQQGLSDETFRDLQEQFNAQRGEQQGQQGQGG 630
Query: 71 ILQQQQQQQQQQQQQQQQQQQQQQQ 95
Q Q QQ QQ Q QQQ QQ Q
Sbjct: 631 QGQGQPGQQGQQGQGQQQGQQGQGG 655
Score = 33.3 bits (77), Expect = 0.11
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQR 215
+ QQQ QQQ Q QQQ +Q R
Sbjct: 737 EAMAQQQGQQQGGQGQQQGRQGGNGR 762
Score = 33.0 bits (76), Expect = 0.13
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 189 LQQQQQQQQQQQQQQQQQQQQQQQQQRT 216
L + QQQ QQQ Q QQQ +Q
Sbjct: 735 LGEAMAQQQGQQQGGQGQQQGRQGGNGR 762
Score = 31.8 bits (73), Expect = 0.32
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 188 FLQQQQQQQQQQQQQQQQQQQQQQQQQ 214
+++Q +Q Q+ QQ Q Q +
Sbjct: 508 YMRQLAEQAQRNPQQGDQPPDQGNSME 534
Score = 31.0 bits (71), Expect = 0.49
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 7 SLLQQQQQQQQQQQQQQQQQQQQQQQHRQ 35
+L + QQQ QQQ Q QQQ +Q + +
Sbjct: 734 ALGEAMAQQQGQQQGGQGQQQGRQGGNGR 762
Score = 31.0 bits (71), Expect = 0.63
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQRTMSE 219
QQ Q Q Q ++QQ + + R
Sbjct: 650 QQGQGGQGGQGSLAERQQALRDELGRQRGG 679
Score = 30.6 bits (70), Expect = 0.80
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 72 LQQQQQQQQQQQQQQQQQQQQQQQHRHRQQQKQ 104
++Q +Q Q+ QQ Q Q QQ Q
Sbjct: 509 MRQLAEQAQRNPQQGDQPPDQGNSMELTQQDLQ 541
Score = 30.3 bits (69), Expect = 0.85
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 9 LQQQQQQQQQQQQQQQQQQQQQQQHRQQ 36
L + QQQ QQQ Q QQQ +Q +
Sbjct: 735 LGEAMAQQQGQQQGGQGQQQGRQGGNGR 762
Score = 30.3 bits (69), Expect = 1.1
Identities = 6/28 (21%), Positives = 13/28 (46%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQRTM 217
Q Q Q ++QQ + + +Q+ +
Sbjct: 653 QGGQGGQGSLAERQQALRDELGRQRGGL 680
Score = 29.9 bits (68), Expect = 1.4
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQRTMSE 219
Q Q Q + QQ + + ++QQ E
Sbjct: 577 QGGQGGQSEMQQAMEGLGETLREQQGLSDE 606
Score = 29.5 bits (67), Expect = 1.8
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQR 215
+ + QQQ QQQ Q QQQ +Q
Sbjct: 733 RALGEAMAQQQGQQQGGQGQQQGRQG 758
Score = 29.5 bits (67), Expect = 1.8
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 194 QQQQQQQQQQQQQQQQQQQQQRTMSEQ 220
Q Q Q Q + QQ + T+ EQ
Sbjct: 574 QVTQGGQGGQSEMQQAMEGLGETLREQ 600
Score = 28.3 bits (64), Expect = 4.4
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 189 LQQQQQQQQQQQQQQQQQQQQQQQQQRTMSEQ 220
L++ + + QQQ QQQ Q QQ+
Sbjct: 728 LREGARALGEAMAQQQGQQQGGQGQQQGRQGG 759
Score = 28.3 bits (64), Expect = 4.4
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 12 QQQQQQQQQQQQQQQQQQQQQHRQQQ 37
+ QQQ QQQ Q QQQ +Q +
Sbjct: 737 EAMAQQQGQQQGGQGQQQGRQGGNGR 762
Score = 27.6 bits (62), Expect = 6.9
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 9 LQQQQQQQQQQQQQQQQQQQQQQQHRQQQKQ 39
L++ + + QQQ QQQ Q +Q ++
Sbjct: 728 LREGARALGEAMAQQQGQQQGGQGQQQGRQG 758
Score = 27.6 bits (62), Expect = 7.4
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 69 NFILQQQQQQQQQQQQQQQQQQQQQQQ 95
+++ Q +Q Q+ QQ Q Q
Sbjct: 507 DYMRQLAEQAQRNPQQGDQPPDQGNSM 533
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1. Members
of this family are necessary for accurate chromosome
transmission during cell division.
Length = 804
Score = 42.1 bits (99), Expect = 2e-04
Identities = 23/99 (23%), Positives = 31/99 (31%)
Query: 9 LQQQQQQQQQQQQQQQQQQQQQQQHRQQQKQHIKLDTGTEHDCVQDDNGNGRGFDSHSGA 68
LQQ Q QQ Q QQQ + Q Q G
Sbjct: 243 LQQPQFPGLSQQMPPPPPQPPQQQQQPPQPQAQPPPQNQPTPHPGLPQGQNAPLPPPQQP 302
Query: 69 NFILQQQQQQQQQQQQQQQQQQQQQQQHRHRQQQKQHIK 107
+ QQ Q QQ+ Q ++Q Q Q + ++ K
Sbjct: 303 QLLPLVQQPQGQQRGPQFREQLVQLSQQQREALSQEEAK 341
Score = 37.8 bits (88), Expect = 0.004
Identities = 23/107 (21%), Positives = 36/107 (33%), Gaps = 6/107 (5%)
Query: 10 QQQQQQQQQQQQQQQQQQQQQQQHRQQQKQHIKLDTGTEHDCVQDDNGNGR------GFD 63
Q QQ Q QQQQQ Q Q Q + T H +
Sbjct: 246 PQFPGLSQQMPPPPPQPPQQQQQPPQPQAQPPPQNQPTPHPGLPQGQNAPLPPPQQPQLL 305
Query: 64 SHSGANFILQQQQQQQQQQQQQQQQQQQQQQQHRHRQQQKQHIKLDK 110
Q+ Q ++Q Q QQQ++ Q ++ +++H +
Sbjct: 306 PLVQQPQGQQRGPQFREQLVQLSQQQREALSQEEAKRAKRRHKIVSL 352
Score = 33.6 bits (77), Expect = 0.081
Identities = 37/212 (17%), Positives = 52/212 (24%), Gaps = 37/212 (17%)
Query: 4 ELSSLLQQQQQQQQQQQQQQQQQQQQQQQHRQQQKQHIKLDTGTEHDCVQDDNGNGRGFD 63
E+ + LQQ+QQ Q Q QQ Q + Q + + +
Sbjct: 158 EVEAQLQQRQQAPQLPQPPQQVLPQGMPPRQAAFPQQGPPEQPPGYPQPPQGHPEQVQPQ 217
Query: 64 SHSGANFILQQQQQQQQQQQQQQQQQQQQQQQHRHRQQQKQHIKLDKGTEHVFKTTMVME 123
A Q Q QQ QQ Q +Q
Sbjct: 218 QFLPAPSQAPAQPPLPPQLPQQPPPLQQPQFPGLSQQMPPPP---------------PQP 262
Query: 124 IGKQAEHNIIVLVEFAIALVTILDQINRESFQRFRLRMAILDLNVAILGENFKLLLYLPT 183
+Q + T + + L P
Sbjct: 263 PQQQQQPPQPQAQPPPQNQPTPHPGLPQGQNAP----------------------LPPPQ 300
Query: 184 YLIFFLQQQQQQQQQQQQQQQQQQQQQQQQQR 215
QQ Q QQ+ Q ++Q Q QQQR
Sbjct: 301 QPQLLPLVQQPQGQQRGPQFREQLVQLSQQQR 332
Score = 33.6 bits (77), Expect = 0.092
Identities = 22/104 (21%), Positives = 25/104 (24%), Gaps = 3/104 (2%)
Query: 3 AELSSLLQQQQQQQQQQQQQQQQQQQQQQQHRQQQKQHIKLDTGTEHDCVQDDNGNGRGF 62
+ QQ +Q Q Q +Q QQ Q
Sbjct: 185 PPRQAAFPQQGPPEQPPGYPQPPQGHPEQVQPQQFLPAPSQAPAQPPLPPQLPQQPP--- 241
Query: 63 DSHSGANFILQQQQQQQQQQQQQQQQQQQQQQQHRHRQQQKQHI 106
L QQ Q QQQQQ Q Q Q Q
Sbjct: 242 PLQQPQFPGLSQQMPPPPPQPPQQQQQPPQPQAQPPPQNQPTPH 285
Score = 33.2 bits (76), Expect = 0.12
Identities = 20/109 (18%), Positives = 26/109 (23%), Gaps = 4/109 (3%)
Query: 1 MTAELSSLLQQQQQQQQQQQQQQQQQQQQQQQHRQQQKQHIKLDTGTE----HDCVQDDN 56
++ E QQ+QQ Q Q QQ Q RQ +
Sbjct: 154 LSLEEVEAQLQQRQQAPQLPQPPQQVLPQGMPPRQAAFPQQGPPEQPPGYPQPPQGHPEQ 213
Query: 57 GNGRGFDSHSGANFILQQQQQQQQQQQQQQQQQQQQQQQHRHRQQQKQH 105
+ F Q QQ QQ Q + Q
Sbjct: 214 VQPQQFLPAPSQAPAQPPLPPQLPQQPPPLQQPQFPGLSQQMPPPPPQP 262
Score = 31.3 bits (71), Expect = 0.41
Identities = 21/101 (20%), Positives = 26/101 (25%)
Query: 4 ELSSLLQQQQQQQQQQQQQQQQQQQQQQQHRQQQKQHIKLDTGTEHDCVQDDNGNGRGFD 63
LS + Q QQ+QQ Q Q QQ +Q G +
Sbjct: 153 MLSLEEVEAQLQQRQQAPQLPQPPQQVLPQGMPPRQAAFPQQGPPEQPPGYPQPPQGHPE 212
Query: 64 SHSGANFILQQQQQQQQQQQQQQQQQQQQQQQHRHRQQQKQ 104
F+ Q Q Q QQ Q Q
Sbjct: 213 QVQPQQFLPAPSQAPAQPPLPPQLPQQPPPLQQPQFPGLSQ 253
Score = 27.8 bits (62), Expect = 5.4
Identities = 12/32 (37%), Positives = 13/32 (40%)
Query: 189 LQQQQQQQQQQQQQQQQQQQQQQQQQRTMSEQ 220
LQQ Q QQ Q QQQQQ +
Sbjct: 243 LQQPQFPGLSQQMPPPPPQPPQQQQQPPQPQA 274
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein
TolA; Provisional.
Length = 387
Score = 40.9 bits (96), Expect = 3e-04
Identities = 21/95 (22%), Positives = 44/95 (46%), Gaps = 28/95 (29%)
Query: 10 QQQQQQQQQQQQQQQQQQQQQQQHRQQQKQHIKLDTGTEHDCVQDDNGNGRGFDSHSGAN 69
QQQQQ+ ++ ++Q+++++QQQ QQKQ A
Sbjct: 67 QQQQQKSAKRAEEQRKKKEQQQAEELQQKQ----------------------------AA 98
Query: 70 FILQQQQQQQQQQQQQQQQQQQQQQQHRHRQQQKQ 104
+ +Q ++++ Q+Q++Q ++ + +QKQ
Sbjct: 99 EQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQ 133
Score = 33.6 bits (77), Expect = 0.066
Identities = 9/31 (29%), Positives = 21/31 (67%)
Query: 9 LQQQQQQQQQQQQQQQQQQQQQQQHRQQQKQ 39
L+Q ++++ Q+Q++Q ++ +Q +QKQ
Sbjct: 103 LKQLEKERLAAQEQKKQAEEAAKQAALKQKQ 133
Score = 33.6 bits (77), Expect = 0.066
Identities = 15/100 (15%), Positives = 40/100 (40%), Gaps = 32/100 (32%)
Query: 9 LQQQQQQQQQQQQQQQQQQQQQQQHRQQQKQHIKLDTGTEHDCVQDDNGNGRGFDSHSGA 68
+++++QQQ ++ QQ+Q +Q++ + ++++
Sbjct: 80 QRKKKEQQQAEELQQKQAAEQERLKQLEKER----------------------------- 110
Query: 69 NFILQQQQQQQQQQQQQQQQQQQQQQQHRHRQQQKQHIKL 108
L Q+Q++Q ++ +Q +Q+Q + K
Sbjct: 111 ---LAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKA 147
Score = 29.8 bits (67), Expect = 1.1
Identities = 6/33 (18%), Positives = 21/33 (63%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQRTMSEQCK 222
Q++ +Q ++++ Q+Q++Q ++ + + + K
Sbjct: 100 QERLKQLEKERLAAQEQKKQAEEAAKQAALKQK 132
Score = 29.8 bits (67), Expect = 1.3
Identities = 7/34 (20%), Positives = 19/34 (55%)
Query: 189 LQQQQQQQQQQQQQQQQQQQQQQQQQRTMSEQCK 222
L++++ Q+Q++Q ++ +Q +Q+ E
Sbjct: 106 LEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAA 139
Score = 29.4 bits (66), Expect = 1.6
Identities = 10/34 (29%), Positives = 22/34 (64%)
Query: 189 LQQQQQQQQQQQQQQQQQQQQQQQQQRTMSEQCK 222
LQQ+Q +Q++ +Q ++++ Q+Q++ E K
Sbjct: 92 LQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAK 125
Score = 29.0 bits (65), Expect = 2.2
Identities = 11/35 (31%), Positives = 26/35 (74%)
Query: 73 QQQQQQQQQQQQQQQQQQQQQQQHRHRQQQKQHIK 107
++Q+++++QQQ ++ QQ+Q +Q R +Q +K+ +
Sbjct: 78 EEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLA 112
Score = 28.6 bits (64), Expect = 2.6
Identities = 17/98 (17%), Positives = 42/98 (42%), Gaps = 33/98 (33%)
Query: 11 QQQQQQQQQQQQQQQQQQQQQQHRQQQKQHIKLDTGTEHDCVQDDNGNGRGFDSHSGANF 70
+Q +QQQQQ+ ++ ++Q+++ QQQ +
Sbjct: 62 EQYNRQQQQQKSAKRAEEQRKKKEQQQAE------------------------------- 90
Query: 71 ILQQQQQQQQQQQQQQQQQQQQQQQHRHRQQQKQHIKL 108
+ QQ+Q +Q++ +Q ++++ ++Q ++ K
Sbjct: 91 --ELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQ 126
Score = 28.6 bits (64), Expect = 2.7
Identities = 8/32 (25%), Positives = 21/32 (65%)
Query: 8 LLQQQQQQQQQQQQQQQQQQQQQQQHRQQQKQ 39
L Q+Q +Q++ +Q ++++ Q+Q +Q ++
Sbjct: 92 LQQKQAAEQERLKQLEKERLAAQEQKKQAEEA 123
Score = 28.6 bits (64), Expect = 2.8
Identities = 5/33 (15%), Positives = 20/33 (60%)
Query: 188 FLQQQQQQQQQQQQQQQQQQQQQQQQQRTMSEQ 220
++ +Q ++++ Q+Q++Q ++ ++ +Q
Sbjct: 99 EQERLKQLEKERLAAQEQKKQAEEAAKQAALKQ 131
Score = 28.2 bits (63), Expect = 3.6
Identities = 8/39 (20%), Positives = 21/39 (53%)
Query: 4 ELSSLLQQQQQQQQQQQQQQQQQQQQQQQHRQQQKQHIK 42
L L +++ Q+Q++Q ++ +Q + +Q ++ K
Sbjct: 102 RLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAK 140
Score = 28.2 bits (63), Expect = 3.8
Identities = 6/33 (18%), Positives = 18/33 (54%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQRTMSEQCK 222
+++ Q+Q++Q ++ +Q +Q++ K
Sbjct: 108 KERLAAQEQKKQAEEAAKQAALKQKQAEEAAAK 140
Score = 27.8 bits (62), Expect = 5.2
Identities = 9/36 (25%), Positives = 21/36 (58%)
Query: 4 ELSSLLQQQQQQQQQQQQQQQQQQQQQQQHRQQQKQ 39
EL +Q++ +Q ++++ Q+Q++Q + KQ
Sbjct: 91 ELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQ 126
Score = 27.8 bits (62), Expect = 5.4
Identities = 10/33 (30%), Positives = 23/33 (69%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQRTMSEQCK 222
+QQQQQ+ ++ ++Q+++++QQQ + +Q
Sbjct: 66 RQQQQQKSAKRAEEQRKKKEQQQAEELQQKQAA 98
Score = 27.5 bits (61), Expect = 7.3
Identities = 7/33 (21%), Positives = 18/33 (54%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQRTMSEQCK 222
Q+Q++Q ++ +Q +Q+Q ++ + K
Sbjct: 114 QEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAK 146
Score = 27.1 bits (60), Expect = 8.6
Identities = 6/31 (19%), Positives = 18/31 (58%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQRTMSEQ 220
+Q ++++ Q+Q++Q ++ +Q +Q
Sbjct: 103 LKQLEKERLAAQEQKKQAEEAAKQAALKQKQ 133
>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional.
Length = 1355
Score = 38.9 bits (90), Expect = 0.002
Identities = 28/93 (30%), Positives = 32/93 (34%), Gaps = 19/93 (20%)
Query: 10 QQQQQQQQQQQQQQQQQQQQQQQHRQQQKQHIKLDTGTEHDCVQDDNGNGRGFDSHSGAN 69
QQ QQ QQ Q Q QQ QQ Q Q Q + + Q
Sbjct: 763 QQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQ---------------- 806
Query: 70 FILQQQQQQQQQQQQQQQQQQQQQQQHRHRQQQ 102
QQ Q Q QQ QQ Q Q++ QQ
Sbjct: 807 ---PQQPVAPQPQYQQPQQPVAPQPQYQQPQQP 836
Score = 38.5 bits (89), Expect = 0.002
Identities = 29/95 (30%), Positives = 33/95 (34%), Gaps = 23/95 (24%)
Query: 11 QQQQQQQQQQQQQQQQQQQQQQHRQQQKQHIKLDTGTEHDCVQDDNGNGRGFDSHSGANF 70
QQQ QQ QQ Q Q QQ QQ Q Q+ +
Sbjct: 762 QQQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAP--------------------- 800
Query: 71 ILQQQQQQQQQQQQQQQQQQQQQQQHRHRQQQKQH 105
Q Q QQ QQ Q Q QQ QQ + Q +Q
Sbjct: 801 --QPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQP 833
Score = 36.6 bits (84), Expect = 0.010
Identities = 26/101 (25%), Positives = 33/101 (32%), Gaps = 16/101 (15%)
Query: 4 ELSSLLQQQQQQQQQQQQQQQQQQQQQQQHRQQQKQHIKLDTGTEHDCVQDDNGNGRGFD 63
QQQ QQ QQ Q Q QQ +Q + + Q
Sbjct: 752 VQQPQQPVAPQQQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQ-------- 803
Query: 64 SHSGANFILQQQQQQQQQQQQQQQQQQQQQQQHRHRQQQKQ 104
QQ QQ Q Q QQ QQ Q +++Q Q+
Sbjct: 804 --------YQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQP 836
Score = 30.8 bits (69), Expect = 0.63
Identities = 15/34 (44%), Positives = 16/34 (47%)
Query: 74 QQQQQQQQQQQQQQQQQQQQQQHRHRQQQKQHIK 107
Q Q QQ QQ Q Q QQ QQ Q Q Q +
Sbjct: 775 QPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQ 808
>gnl|CDD|234714 PRK00286, xseA, exodeoxyribonuclease VII large subunit; Reviewed.
Length = 438
Score = 37.5 bits (88), Expect = 0.004
Identities = 20/111 (18%), Positives = 48/111 (43%), Gaps = 5/111 (4%)
Query: 5 LSSLLQQQQQQQQQQQQQQQQQQQQQQQHRQQQKQHIKLDTGTEHDCVQDDNGNGRGFDS 64
L+ ++++ +Q++Q+ Q ++ + Q R +Q +LD Q
Sbjct: 276 LARAMRRRLEQKRQRLDQLARRLKFQSPERLLAQQQQRLD-----RLQQRLQRALERRLR 330
Query: 65 HSGANFILQQQQQQQQQQQQQQQQQQQQQQQHRHRQQQKQHIKLDKGTEHV 115
+ Q+ QQQ Q++ ++ QQ+ +Q R ++ +L + + +
Sbjct: 331 LAKQRLERLSQRLQQQNPQRRIERAQQRLEQLEQRLRRAMRRQLKRKRQRL 381
Score = 35.2 bits (82), Expect = 0.021
Identities = 18/100 (18%), Positives = 45/100 (45%)
Query: 9 LQQQQQQQQQQQQQQQQQQQQQQQHRQQQKQHIKLDTGTEHDCVQDDNGNGRGFDSHSGA 68
L Q ++ + Q ++ QQQQ+ R QQ+ L+ + + + R +
Sbjct: 291 LDQLARRLKFQSPERLLAQQQQRLDRLQQRLQRALERRLRLAKQRLERLSQRLQQQNPQR 350
Query: 69 NFILQQQQQQQQQQQQQQQQQQQQQQQHRHRQQQKQHIKL 108
QQ+ +Q +Q+ ++ ++Q +++ + + Q ++
Sbjct: 351 RIERAQQRLEQLEQRLRRAMRRQLKRKRQRLEALAQQLEA 390
Score = 34.8 bits (81), Expect = 0.026
Identities = 22/101 (21%), Positives = 47/101 (46%)
Query: 5 LSSLLQQQQQQQQQQQQQQQQQQQQQQQHRQQQKQHIKLDTGTEHDCVQDDNGNGRGFDS 64
+ LLQ+ QQ QQ+ + +++ +Q++Q Q + +K + Q +
Sbjct: 262 RAELLQRLQQLQQRLARAMRRRLEQKRQRLDQLARRLKFQSPERLLAQQQQRLDRLQQRL 321
Query: 65 HSGANFILQQQQQQQQQQQQQQQQQQQQQQQHRHRQQQKQH 105
L+ +Q+ ++ Q+ QQQ Q++ R +Q+ +Q
Sbjct: 322 QRALERRLRLAKQRLERLSQRLQQQNPQRRIERAQQRLEQL 362
Score = 34.8 bits (81), Expect = 0.032
Identities = 18/108 (16%), Positives = 48/108 (44%), Gaps = 3/108 (2%)
Query: 1 MTAELSSLLQQQQQQQQQQQQQQQQQQQQQQQHRQQQKQH---IKLDTGTEHDCVQDDNG 57
+ + L+Q++Q+ Q ++ + Q ++ +QQQ+ +L E
Sbjct: 276 LARAMRRRLEQKRQRLDQLARRLKFQSPERLLAQQQQRLDRLQQRLQRALERRLRLAKQR 335
Query: 58 NGRGFDSHSGANFILQQQQQQQQQQQQQQQQQQQQQQQHRHRQQQKQH 105
R N + ++ QQ+ +Q +Q+ ++ ++Q + ++Q+ +
Sbjct: 336 LERLSQRLQQQNPQRRIERAQQRLEQLEQRLRRAMRRQLKRKRQRLEA 383
>gnl|CDD|173487 PTZ00236, PTZ00236, mitochondrial import inner membrane translocase
subunit tim17; Provisional.
Length = 164
Score = 36.6 bits (85), Expect = 0.004
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 191 QQQQQQQQQQQQQQQQQQQQQQQQRTMSEQ 220
++Q + +QQ QQQQ+ ++Q ++ EQ
Sbjct: 134 NRRQMRTPRQQFQQQQEMEKQLEEEDKKEQ 163
Score = 34.2 bits (79), Expect = 0.024
Identities = 9/31 (29%), Positives = 21/31 (67%)
Query: 9 LQQQQQQQQQQQQQQQQQQQQQQQHRQQQKQ 39
+ ++Q + +QQ QQQQ+ ++Q + +++Q
Sbjct: 133 MNRRQMRTPRQQFQQQQEMEKQLEEEDKKEQ 163
Score = 34.2 bits (79), Expect = 0.026
Identities = 9/33 (27%), Positives = 20/33 (60%)
Query: 186 IFFLQQQQQQQQQQQQQQQQQQQQQQQQQRTMS 218
I ++Q + +QQ QQQQ+ ++Q +++ +
Sbjct: 131 IGMNRRQMRTPRQQFQQQQEMEKQLEEEDKKEQ 163
Score = 33.9 bits (78), Expect = 0.032
Identities = 9/31 (29%), Positives = 21/31 (67%)
Query: 71 ILQQQQQQQQQQQQQQQQQQQQQQQHRHRQQ 101
+ ++Q + +QQ QQQQ+ ++Q ++ ++Q
Sbjct: 133 MNRRQMRTPRQQFQQQQEMEKQLEEEDKKEQ 163
Score = 33.9 bits (78), Expect = 0.033
Identities = 9/31 (29%), Positives = 21/31 (67%)
Query: 72 LQQQQQQQQQQQQQQQQQQQQQQQHRHRQQQ 102
+ ++Q + +QQ QQQQ+ ++Q + +++Q
Sbjct: 133 MNRRQMRTPRQQFQQQQEMEKQLEEEDKKEQ 163
Score = 33.1 bits (76), Expect = 0.059
Identities = 8/31 (25%), Positives = 22/31 (70%)
Query: 8 LLQQQQQQQQQQQQQQQQQQQQQQQHRQQQK 38
+ ++Q + +QQ QQQQ+ ++Q ++ ++++
Sbjct: 133 MNRRQMRTPRQQFQQQQEMEKQLEEEDKKEQ 163
Score = 31.9 bits (73), Expect = 0.14
Identities = 8/26 (30%), Positives = 19/26 (73%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQR 215
+ +QQ QQQQ+ ++Q +++ +++Q
Sbjct: 139 RTPRQQFQQQQEMEKQLEEEDKKEQA 164
Score = 31.2 bits (71), Expect = 0.29
Identities = 12/36 (33%), Positives = 23/36 (63%)
Query: 4 ELSSLLQQQQQQQQQQQQQQQQQQQQQQQHRQQQKQ 39
EL S+ ++Q + +QQ QQQQ+ ++Q + +K+
Sbjct: 127 ELVSIGMNRRQMRTPRQQFQQQQEMEKQLEEEDKKE 162
Score = 30.4 bits (69), Expect = 0.44
Identities = 9/30 (30%), Positives = 19/30 (63%)
Query: 75 QQQQQQQQQQQQQQQQQQQQQHRHRQQQKQ 104
++Q + +QQ QQQQ+ ++Q +++Q
Sbjct: 134 NRRQMRTPRQQFQQQQEMEKQLEEEDKKEQ 163
Score = 30.0 bits (68), Expect = 0.60
Identities = 9/33 (27%), Positives = 20/33 (60%)
Query: 71 ILQQQQQQQQQQQQQQQQQQQQQQQHRHRQQQK 103
I ++Q + +QQ QQQQ+ ++Q ++++
Sbjct: 131 IGMNRRQMRTPRQQFQQQQEMEKQLEEEDKKEQ 163
Score = 29.2 bits (66), Expect = 1.0
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 67 GANFILQQQQQQQQQQQQQQQQQQQQQQ 94
G N + +QQ QQQQ+ ++Q +++
Sbjct: 132 GMNRRQMRTPRQQFQQQQEMEKQLEEED 159
Score = 29.2 bits (66), Expect = 1.2
Identities = 7/26 (26%), Positives = 18/26 (69%)
Query: 70 FILQQQQQQQQQQQQQQQQQQQQQQQ 95
++ +QQ QQQQ+ ++Q +++ ++
Sbjct: 136 RQMRTPRQQFQQQQEMEKQLEEEDKK 161
Score = 28.5 bits (64), Expect = 2.0
Identities = 7/25 (28%), Positives = 17/25 (68%)
Query: 10 QQQQQQQQQQQQQQQQQQQQQQQHR 34
+QQ QQQQ+ ++Q +++ +++
Sbjct: 140 TPRQQFQQQQEMEKQLEEEDKKEQA 164
Score = 28.5 bits (64), Expect = 2.0
Identities = 7/25 (28%), Positives = 17/25 (68%)
Query: 73 QQQQQQQQQQQQQQQQQQQQQQQHR 97
+QQ QQQQ+ ++Q +++ +++
Sbjct: 140 TPRQQFQQQQEMEKQLEEEDKKEQA 164
>gnl|CDD|236544 PRK09506, mrcB, bifunctional glycosyl transferase/transpeptidase;
Reviewed.
Length = 830
Score = 36.3 bits (84), Expect = 0.010
Identities = 16/35 (45%), Positives = 19/35 (54%)
Query: 2 TAELSSLLQQQQQQQQQQQQQQQQQQQQQQQHRQQ 36
T + SL QQ + QQQ Q QQQ QQQ +Q
Sbjct: 784 TDDPQSLCQQSEMQQQPSQPQQQPQQQPAEQKDSD 818
Score = 35.1 bits (81), Expect = 0.026
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQ 214
QQ + QQQ Q QQQ QQQ +Q+
Sbjct: 792 QQSEMQQQPSQPQQQPQQQPAEQKD 816
Score = 35.1 bits (81), Expect = 0.027
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 189 LQQQQQQQQQQQQQQQQQQQQQQQQQ 214
L QQ + QQQ Q QQQ QQQ +Q+
Sbjct: 790 LCQQSEMQQQPSQPQQQPQQQPAEQK 815
Score = 33.6 bits (77), Expect = 0.076
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 7 SLLQQQQQQQQQQQQQQQQQQQQQQQHRQQQ 37
L QQ + QQQ Q QQQ QQQ + +
Sbjct: 788 QSLCQQSEMQQQPSQPQQQPQQQPAEQKDSD 818
Score = 33.6 bits (77), Expect = 0.087
Identities = 13/23 (56%), Positives = 15/23 (65%)
Query: 73 QQQQQQQQQQQQQQQQQQQQQQQ 95
QQ + QQQ Q QQQ QQQ +Q
Sbjct: 792 QQSEMQQQPSQPQQQPQQQPAEQ 814
Score = 33.2 bits (76), Expect = 0.12
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQ 214
Q + QQQ Q QQQ QQQ +Q+
Sbjct: 793 QSEMQQQPSQPQQQPQQQPAEQKDS 817
Score = 32.8 bits (75), Expect = 0.14
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 12 QQQQQQQQQQQQQQQQQQQQQHRQQQK 38
QQ + QQQ Q QQQ QQQ ++
Sbjct: 792 QQSEMQQQPSQPQQQPQQQPAEQKDSD 818
Score = 32.8 bits (75), Expect = 0.16
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 13 QQQQQQQQQQQQQQQQQQQQHRQQQKQ 39
QQ + QQQ Q QQQ QQQ Q+
Sbjct: 792 QQSEMQQQPSQPQQQPQQQPAEQKDSD 818
Score = 32.4 bits (74), Expect = 0.18
Identities = 13/24 (54%), Positives = 15/24 (62%)
Query: 72 LQQQQQQQQQQQQQQQQQQQQQQQ 95
L QQ + QQQ Q QQQ QQQ +
Sbjct: 790 LCQQSEMQQQPSQPQQQPQQQPAE 813
Score = 32.4 bits (74), Expect = 0.18
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 193 QQQQQQQQQQQQQQQQQQQQQQRTMSE 219
QQ + QQQ Q QQQ QQQ ++ S+
Sbjct: 792 QQSEMQQQPSQPQQQPQQQPAEQKDSD 818
Score = 32.4 bits (74), Expect = 0.21
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 73 QQQQQQQQQQQQQQQQQQQQQQQ 95
Q + QQQ Q QQQ QQQ +Q+
Sbjct: 793 QSEMQQQPSQPQQQPQQQPAEQK 815
Score = 32.4 bits (74), Expect = 0.23
Identities = 12/27 (44%), Positives = 13/27 (48%)
Query: 194 QQQQQQQQQQQQQQQQQQQQQRTMSEQ 220
QQ + QQQ Q QQQ QQQ
Sbjct: 792 QQSEMQQQPSQPQQQPQQQPAEQKDSD 818
Score = 32.0 bits (73), Expect = 0.25
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQ 214
+ QQQ Q QQQ QQQ +Q+
Sbjct: 794 SEMQQQPSQPQQQPQQQPAEQKDSD 818
Score = 31.3 bits (71), Expect = 0.53
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 73 QQQQQQQQQQQQQQQQQQQQQQQ 95
+ QQQ Q QQQ QQQ +Q+
Sbjct: 794 SEMQQQPSQPQQQPQQQPAEQKD 816
Score = 30.9 bits (70), Expect = 0.66
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 73 QQQQQQQQQQQQQQQQQQQQQQQ 95
+ QQQ Q QQQ QQQ +Q+
Sbjct: 795 EMQQQPSQPQQQPQQQPAEQKDS 817
Score = 30.5 bits (69), Expect = 0.84
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 73 QQQQQQQQQQQQQQQQQQQQQQQ 95
QQQ Q QQQ QQQ +Q+
Sbjct: 796 MQQQPSQPQQQPQQQPAEQKDSD 818
Score = 29.7 bits (67), Expect = 1.3
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 76 QQQQQQQQQQQQQQQQQQQQHRHRQQQ 102
QQ + QQQ Q QQQ QQQ +
Sbjct: 792 QQSEMQQQPSQPQQQPQQQPAEQKDSD 818
Score = 29.7 bits (67), Expect = 1.5
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 77 QQQQQQQQQQQQQQQQQQQHRHRQQQK 103
QQ + QQQ Q QQQ QQQ ++
Sbjct: 792 QQSEMQQQPSQPQQQPQQQPAEQKDSD 818
Score = 29.0 bits (65), Expect = 2.6
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 78 QQQQQQQQQQQQQQQQQQHRHRQQQKQ 104
QQ + QQQ Q QQQ QQ Q+
Sbjct: 792 QQSEMQQQPSQPQQQPQQQPAEQKDSD 818
Score = 27.8 bits (62), Expect = 5.3
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 18 QQQQQQQQQQQQQQQHRQQQKQHIKLD 44
QQ + QQQ Q QQQ +QQ + D
Sbjct: 792 QQSEMQQQPSQPQQQPQQQPAEQKDSD 818
>gnl|CDD|217451 pfam03249, TSA, Type specific antigen. There are several antigenic
variants in Rickettsia tsutsugamushi, and a
type-specific antigen (TSA) of 56-kilodaltons located on
the rickettsial surface is responsible for the
variation. TSA proteins are probably integral membrane
proteins.
Length = 502
Score = 36.4 bits (84), Expect = 0.010
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 69 NFILQQQQQQQQQQQQQQQQQQQQQ 93
NF++ QQ QQQ Q QQQQ Q Q+
Sbjct: 303 NFVIPQQAQQQGQGQQQQAQATAQE 327
Score = 34.8 bits (80), Expect = 0.033
Identities = 16/32 (50%), Positives = 16/32 (50%)
Query: 188 FLQQQQQQQQQQQQQQQQQQQQQQQQQRTMSE 219
F Q Q QQ QQQ Q QQQQ Q T E
Sbjct: 296 FANQIQLNFVIPQQAQQQGQGQQQQAQATAQE 327
Score = 33.3 bits (76), Expect = 0.086
Identities = 14/26 (53%), Positives = 16/26 (61%)
Query: 185 LIFFLQQQQQQQQQQQQQQQQQQQQQ 210
L F + QQ QQQ Q QQQQ Q Q+
Sbjct: 302 LNFVIPQQAQQQGQGQQQQAQATAQE 327
Score = 32.2 bits (73), Expect = 0.20
Identities = 17/40 (42%), Positives = 19/40 (47%)
Query: 62 FDSHSGANFILQQQQQQQQQQQQQQQQQQQQQQQHRHRQQ 101
FD + G F Q Q QQ QQQ Q QQQQ Q+
Sbjct: 288 FDGYIGNAFANQIQLNFVIPQQAQQQGQGQQQQAQATAQE 327
Score = 32.2 bits (73), Expect = 0.23
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 4 ELSSLLQQQQQQQQQQQQQQQQQQQQQ 30
+L+ ++ QQ QQQ Q QQQQ Q Q+
Sbjct: 301 QLNFVIPQQAQQQGQGQQQQAQATAQE 327
Score = 31.8 bits (72), Expect = 0.32
Identities = 12/20 (60%), Positives = 13/20 (65%)
Query: 12 QQQQQQQQQQQQQQQQQQQQ 31
QQ QQQ Q QQQQ Q Q+
Sbjct: 308 QQAQQQGQGQQQQAQATAQE 327
Score = 31.8 bits (72), Expect = 0.32
Identities = 12/20 (60%), Positives = 13/20 (65%)
Query: 13 QQQQQQQQQQQQQQQQQQQQ 32
QQ QQQ Q QQQQ Q Q+
Sbjct: 308 QQAQQQGQGQQQQAQATAQE 327
Score = 29.8 bits (67), Expect = 1.2
Identities = 14/27 (51%), Positives = 14/27 (51%)
Query: 187 FFLQQQQQQQQQQQQQQQQQQQQQQQQ 213
F Q Q QQ QQQ Q QQQQ Q
Sbjct: 296 FANQIQLNFVIPQQAQQQGQGQQQQAQ 322
Score = 29.5 bits (66), Expect = 1.5
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 191 QQQQQQQQQQQQQQQQQQQQQQQQRTMSEQ 220
Q Q QQ QQQ Q QQQQ + +++
Sbjct: 298 NQIQLNFVIPQQAQQQGQGQQQQAQATAQE 327
>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed.
Length = 1068
Score = 36.2 bits (84), Expect = 0.012
Identities = 21/88 (23%), Positives = 42/88 (47%), Gaps = 21/88 (23%)
Query: 10 QQQQQQQQQQQQQQQQQQQQQQQHRQQQKQHIKLDTGTEHDCVQDDNGNGRGFDSHSGAN 69
+ + Q +QQQ ++++Q+++ + RQ Q Q K E VQ+
Sbjct: 664 KARTQDEQQQAPRRERQRRRNDEKRQAQ-QEAKALN-VEEQSVQE--------------- 706
Query: 70 FILQQQQQQQQQQQQQQQQQQQQQQQHR 97
+Q+++ QQ Q +++Q+Q Q+ R
Sbjct: 707 ----TEQEERVQQVQPRRKQRQLNQKVR 730
Score = 35.4 bits (82), Expect = 0.021
Identities = 17/97 (17%), Positives = 41/97 (42%), Gaps = 30/97 (30%)
Query: 11 QQQQQQQQQQQQQQQQQQQQQQHRQQQKQHIKLDTGTEHDCVQDDNGNGRGFDSHSGANF 70
+ + Q +QQQ ++++Q+++ ++Q +Q K
Sbjct: 664 KARTQDEQQQAPRRERQRRRNDEKRQAQQEAK---------------------------- 695
Query: 71 ILQQQQQQQQQQQQQQQQQQQQQQQHRHRQQQKQHIK 107
++Q Q+ +Q+++ QQ Q R ++Q Q ++
Sbjct: 696 --ALNVEEQSVQETEQEERVQQVQPRRKQRQLNQKVR 730
Score = 32.7 bits (75), Expect = 0.17
Identities = 18/111 (16%), Positives = 51/111 (45%), Gaps = 17/111 (15%)
Query: 11 QQQQQQQQQQQQQQQQQQQQQQHRQQQKQHIKLDTGTEHDC-----------VQDDNGNG 59
++ + Q+Q + + + ++QQ R++ +Q+ + D D +++N
Sbjct: 583 GEETKPQEQPAPKAEAKPERQQDRRKPRQNNRRDRNERRDTRDNRTRREGRENREENRRN 642
Query: 60 R------GFDSHSGANFILQQQQQQQQQQQQQQQQQQQQQQQHRHRQQQKQ 104
R ++ + ++ + Q +QQQ ++++Q+++ RQ Q++
Sbjct: 643 RRQAQQQTAETRESQQAEVTEKARTQDEQQQAPRRERQRRRNDEKRQAQQE 693
Score = 31.2 bits (71), Expect = 0.59
Identities = 8/25 (32%), Positives = 19/25 (76%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQ 214
Q +QQQ ++++Q+++ +++Q QQ
Sbjct: 668 QDEQQQAPRRERQRRRNDEKRQAQQ 692
Score = 30.0 bits (68), Expect = 1.2
Identities = 7/25 (28%), Positives = 19/25 (76%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQ 214
+QQQ ++++Q+++ +++Q QQ+
Sbjct: 669 DEQQQAPRRERQRRRNDEKRQAQQE 693
Score = 28.9 bits (65), Expect = 2.9
Identities = 7/25 (28%), Positives = 18/25 (72%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQ 214
Q +QQQ ++++Q+++ +++Q Q
Sbjct: 667 TQDEQQQAPRRERQRRRNDEKRQAQ 691
Score = 28.9 bits (65), Expect = 2.9
Identities = 7/33 (21%), Positives = 21/33 (63%)
Query: 191 QQQQQQQQQQQQQQQQQQQQQQQQRTMSEQCKI 223
+ + Q +QQQ ++++Q+++ ++R ++ K
Sbjct: 664 KARTQDEQQQAPRRERQRRRNDEKRQAQQEAKA 696
>gnl|CDD|216281 pfam01070, FMN_dh, FMN-dependent dehydrogenase.
Length = 302
Score = 35.1 bits (82), Expect = 0.017
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 7/41 (17%)
Query: 150 NRESFQRFRLRMAIL------DLNVAILGENFKLLLYL-PT 183
NR +F R RLR +L DL+ +LG+ L + PT
Sbjct: 26 NRAAFDRIRLRPRVLRDVSDRDLSTTLLGQRLSLPFGIAPT 66
>gnl|CDD|151621 pfam11179, DUF2967, Protein of unknown function (DUF2967). This
family of proteins with unknown function appears to be
restricted to Drosophila.
Length = 284
Score = 34.6 bits (78), Expect = 0.031
Identities = 17/57 (29%), Positives = 24/57 (42%)
Query: 6 SSLLQQQQQQQQQQQQQQQQQQQQQQQHRQQQKQHIKLDTGTEHDCVQDDNGNGRGF 62
SS Q+Q+ Q QQ Q Q QQ+K +G+ C++D G F
Sbjct: 179 SSGKQKQRPSQNIPPPQQHQLSPSSQAAAQQRKYSSSSSSGSSDRCLRDATAAGTMF 235
Score = 26.9 bits (58), Expect = 9.2
Identities = 11/40 (27%), Positives = 18/40 (45%)
Query: 187 FFLQQQQQQQQQQQQQQQQQQQQQQQQQRTMSEQCKIRST 226
FF +Q+Q+ Q QQ Q + ++Q K S+
Sbjct: 176 FFGSSGKQKQRPSQNIPPPQQHQLSPSSQAAAQQRKYSSS 215
>gnl|CDD|235316 PRK04863, mukB, cell division protein MukB; Provisional.
Length = 1486
Score = 34.9 bits (81), Expect = 0.031
Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 12/107 (11%)
Query: 7 SLLQQQQQQQQQQQQQQQQQQQQQQQHRQQQKQHIKLDTGTEH----DCVQDDNGNGRGF 62
S+LQ +Q +Q +Q QQ QQ Q+ +QQ ++ H D + N
Sbjct: 928 SVLQSDPEQFEQLKQDYQQAQQTQRDAKQQAFALTEVVQRRAHFSYEDAAEMLAKN---- 983
Query: 63 DSHSGANFILQQQQQQQQQQQQQQQQQQQQQQQHRHRQQQKQHIKLD 109
S N L+Q+ +Q +Q++ + ++Q +Q Q + Q + L
Sbjct: 984 ---SDLNEKLRQRLEQAEQERTRAREQLRQAQA-QLAQYNQVLASLK 1026
Score = 29.2 bits (66), Expect = 2.3
Identities = 15/94 (15%), Positives = 41/94 (43%), Gaps = 8/94 (8%)
Query: 9 LQQQQQQQQQQQQQQQQQQQQQQQHRQQQKQHIKLDTGTEHDCVQDDNGNGRGFDSHSGA 68
L++Q+ +Q QQ + + + +Q+ RQQQ+ L + G+ D
Sbjct: 505 LREQRHLAEQLQQLRMRLSELEQRLRQQQRAERLLA--------EFCKRLGKNLDDEDEL 556
Query: 69 NFILQQQQQQQQQQQQQQQQQQQQQQQHRHRQQQ 102
+ ++ + + + + + ++++ R + +Q
Sbjct: 557 EQLQEELEARLESLSESVSEARERRMALRQQLEQ 590
Score = 28.8 bits (65), Expect = 2.7
Identities = 11/44 (25%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 2 TAELSSLLQQQQQQ-QQQQQQQQQQQQQQQQQHRQQQKQHIKLD 44
++L+ L+Q+ +Q +Q++ + ++Q +Q Q Q Q + L
Sbjct: 983 NSDLNEKLRQRLEQAEQERTRAREQLRQAQAQLAQYNQVLASLK 1026
>gnl|CDD|239203 cd02809, alpha_hydroxyacid_oxid_FMN, Family of homologous
FMN-dependent alpha-hydroxyacid oxidizing enzymes. This
family occurs in both prokaryotes and eukaryotes.
Members of this family include flavocytochrome b2
(FCB2), glycolate oxidase (GOX), lactate monooxygenase
(LMO), mandelate dehydrogenase (MDH), and long chain
hydroxyacid oxidase (LCHAO). In green plants, glycolate
oxidase is one of the key enzymes in photorespiration
where it oxidizes glycolate to glyoxylate. LMO catalyzes
the oxidation of L-lactate to acetate and carbon
dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate.
It is an enzyme in the mandelate pathway that occurs in
several strains of Pseudomonas which converts
(R)-mandelate to benzoate.
Length = 299
Score = 34.3 bits (80), Expect = 0.032
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 7/41 (17%)
Query: 150 NRESFQRFRLRMAIL------DLNVAILGENFKLLLYL-PT 183
NR +F R RLR +L D + +LG+ + + PT
Sbjct: 32 NRAAFDRIRLRPRVLRDVSKRDTSTTLLGQKLAMPFGIAPT 72
>gnl|CDD|236795 PRK10920, PRK10920, putative uroporphyrinogen III
C-methyltransferase; Provisional.
Length = 390
Score = 34.7 bits (80), Expect = 0.035
Identities = 10/37 (27%), Positives = 21/37 (56%)
Query: 3 AELSSLLQQQQQQQQQQQQQQQQQQQQQQQHRQQQKQ 39
+L++L + Q+ Q+Q+ + +QQ + Q +QQ
Sbjct: 74 NQLTALQKAQESQKQELEGILKQQAKALDQANRQQAA 110
Score = 32.8 bits (75), Expect = 0.12
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 72 LQQQQQQQQQQQQQQQQQQQQQQQHRHRQQQKQHIKLD 109
LQ+ Q+ Q+Q+ + +QQ + +RQQ +LD
Sbjct: 79 LQKAQESQKQELEGILKQQAKALDQANRQQAALAKQLD 116
Score = 29.3 bits (66), Expect = 1.6
Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Query: 189 LQQQQQQQQQQQQQQQQQQ----QQQQQQQRTMSEQ 220
LQ+ Q+ Q+Q+ + +QQ Q +QQ +++Q
Sbjct: 79 LQKAQESQKQELEGILKQQAKALDQANRQQAALAKQ 114
>gnl|CDD|215180 PLN02316, PLN02316, synthase/transferase.
Length = 1036
Score = 34.5 bits (79), Expect = 0.049
Identities = 11/50 (22%), Positives = 36/50 (72%)
Query: 61 GFDSHSGANFILQQQQQQQQQQQQQQQQQQQQQQQHRHRQQQKQHIKLDK 110
G D HS +F+L++++++ ++ +++ ++++Q ++ R R+++K ++ D+
Sbjct: 240 GMDEHSFEDFLLEEKRRELEKLAKEEAERERQAEEQRRREEEKAAMEADR 289
>gnl|CDD|236912 PRK11448, hsdR, type I restriction enzyme EcoKI subunit R;
Provisional.
Length = 1123
Score = 34.2 bits (79), Expect = 0.057
Identities = 8/42 (19%), Positives = 23/42 (54%)
Query: 3 AELSSLLQQQQQQQQQQQQQQQQQQQQQQQHRQQQKQHIKLD 44
+ L Q +Q Q++ + Q+++Q++++ Q + ++L
Sbjct: 191 EKQQELEAQLEQLQEKAAETSQERKQKRKEITDQAAKRLELS 232
Score = 32.2 bits (74), Expect = 0.21
Identities = 17/101 (16%), Positives = 38/101 (37%), Gaps = 22/101 (21%)
Query: 9 LQQQQQQQQQQQQQQQQQQQQQQQHRQQQKQHIKLDTGTEHDCVQDDNGNGRGFDSHSGA 68
L+QQ + Q +++ Q Q + QQQ +
Sbjct: 154 LKQQLELQAREKAQSQALAEAQQQELVALEGLAA---------------------ELEEK 192
Query: 69 NFILQQQQQQQQQQQQQQQQQQQQQQQHRHRQQQKQHIKLD 109
L+ Q +Q Q++ + Q+++Q+++ Q + ++L
Sbjct: 193 QQELEAQLEQLQEKAAETSQERKQKRKEI-TDQAAKRLELS 232
Score = 31.5 bits (72), Expect = 0.48
Identities = 11/40 (27%), Positives = 23/40 (57%)
Query: 3 AELSSLLQQQQQQQQQQQQQQQQQQQQQQQHRQQQKQHIK 42
L L + +++QQ+ + Q +Q Q++ + Q++KQ K
Sbjct: 180 VALEGLAAELEEKQQELEAQLEQLQEKAAETSQERKQKRK 219
Score = 31.1 bits (71), Expect = 0.52
Identities = 7/32 (21%), Positives = 22/32 (68%)
Query: 189 LQQQQQQQQQQQQQQQQQQQQQQQQQRTMSEQ 220
Q+ + Q +Q Q++ + Q+++Q+++ +++Q
Sbjct: 193 QQELEAQLEQLQEKAAETSQERKQKRKEITDQ 224
Score = 28.8 bits (65), Expect = 2.9
Identities = 11/48 (22%), Positives = 27/48 (56%)
Query: 3 AELSSLLQQQQQQQQQQQQQQQQQQQQQQQHRQQQKQHIKLDTGTEHD 50
L++ L+++QQ+ + Q +Q Q++ + Q R+Q+++ I +
Sbjct: 183 EGLAAELEEKQQELEAQLEQLQEKAAETSQERKQKRKEITDQAAKRLE 230
Score = 28.8 bits (65), Expect = 3.3
Identities = 9/46 (19%), Positives = 23/46 (50%), Gaps = 7/46 (15%)
Query: 1 MTAELSSLLQQQQQQQQQQQQQ-------QQQQQQQQQQHRQQQKQ 39
EL +L + +++QQ+ Q++ + Q+ +Q++K+
Sbjct: 175 QQQELVALEGLAAELEEKQQELEAQLEQLQEKAAETSQERKQKRKE 220
Score = 28.4 bits (64), Expect = 3.6
Identities = 7/32 (21%), Positives = 21/32 (65%)
Query: 189 LQQQQQQQQQQQQQQQQQQQQQQQQQRTMSEQ 220
LQ++ + Q+++Q++++ Q ++ +SE+
Sbjct: 203 LQEKAAETSQERKQKRKEITDQAAKRLELSEE 234
Score = 28.0 bits (63), Expect = 6.0
Identities = 7/26 (26%), Positives = 18/26 (69%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQR 215
+QQ+ + Q +Q Q++ + Q+++Q+
Sbjct: 192 KQQELEAQLEQLQEKAAETSQERKQK 217
Score = 27.6 bits (62), Expect = 7.1
Identities = 7/27 (25%), Positives = 19/27 (70%)
Query: 189 LQQQQQQQQQQQQQQQQQQQQQQQQQR 215
L+++QQ+ + Q +Q Q++ + Q+++
Sbjct: 189 LEEKQQELEAQLEQLQEKAAETSQERK 215
>gnl|CDD|130706 TIGR01645, half-pint, poly-U binding splicing factor, half-pint
family. The proteins represented by this model contain
three RNA recognition motifs (rrm: pfam00076) and have
been characterized as poly-pyrimidine tract binding
proteins associated with RNA splicing factors. In the
case of PUF60 (GP|6176532), in complex with p54, and in
the presence of U2AF, facilitates association of U2
snRNP with pre-mRNA.
Length = 612
Score = 33.5 bits (76), Expect = 0.077
Identities = 12/30 (40%), Positives = 22/30 (73%)
Query: 194 QQQQQQQQQQQQQQQQQQQQQRTMSEQCKI 223
+Q + QQQQ + QQ+QQQ+Q+ ++ C++
Sbjct: 81 KQTKAHQQQQLENQQRQQQRQQALAIMCRV 110
Score = 33.1 bits (75), Expect = 0.11
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 1 MTAELSSLLQQQQQQQQQQQQQQQQQQQQQQQ 32
M + +L +Q + QQQQ + QQ+QQQ+QQ
Sbjct: 71 MEQSIKQVLLKQTKAHQQQQLENQQRQQQRQQ 102
Score = 32.0 bits (72), Expect = 0.29
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 71 ILQQQQQQQQQQQQQQQQQQQQQQQ 95
+L +Q + QQQQ + QQ+QQQ+QQ
Sbjct: 78 VLLKQTKAHQQQQLENQQRQQQRQQ 102
Score = 31.6 bits (71), Expect = 0.36
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 189 LQQQQQQQQQQQQQQQQQQQQQQQQQRTMS 218
L +Q + QQQQ + QQ+QQQ+QQ M
Sbjct: 79 LLKQTKAHQQQQLENQQRQQQRQQALAIMC 108
Score = 29.7 bits (66), Expect = 1.7
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 186 IFFLQQQQQQQQQQQQQQQQQQQQQ 210
+ Q + QQQQ + QQ+QQQ+QQ
Sbjct: 78 VLLKQTKAHQQQQLENQQRQQQRQQ 102
Score = 29.3 bits (65), Expect = 1.7
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 15 QQQQQQQQQQQQQQQQQQHRQQ 36
+Q + QQQQ + QQ+QQ RQQ
Sbjct: 81 KQTKAHQQQQLENQQRQQQRQQ 102
Score = 28.1 bits (62), Expect = 5.2
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 14 QQQQQQQQQQQQQQQQQQQHRQ 35
+Q + QQQQ + QQ+QQQ +Q
Sbjct: 81 KQTKAHQQQQLENQQRQQQRQQ 102
Score = 27.7 bits (61), Expect = 5.6
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 9 LQQQQQQQQQQQQQQQQQQQQQQQHRQQQKQ 39
++Q +Q +Q + QQQQ + Q RQQQ+Q
Sbjct: 71 MEQSIKQVLLKQTKAHQQQQLENQQRQQQRQ 101
Score = 27.3 bits (60), Expect = 9.3
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 13 QQQQQQQQQQQQQQQQQQQQHR 34
+Q + QQQQ + QQ+QQQ+ +
Sbjct: 81 KQTKAHQQQQLENQQRQQQRQQ 102
Score = 27.3 bits (60), Expect = 9.3
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 76 QQQQQQQQQQQQQQQQQQQQHR 97
+Q + QQQQ + QQ+QQQ+ +
Sbjct: 81 KQTKAHQQQQLENQQRQQQRQQ 102
>gnl|CDD|239238 cd02922, FCB2_FMN, Flavocytochrome b2 (FCB2) FMN-binding domain.
FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a
respiratory enzyme located in the intermembrane space of
fungal mitochondria which catalyzes the oxidation of
L-lactate to pyruvate. FCB2 also participates in a short
electron-transport chain involving cytochrome c and
cytochrome oxidase which ultimately directs the reducing
equivalents gained from L-lactate oxidation to oxygen,
yielding one molecule of ATP for every L-lactate
molecule consumed. FCB2 is composed of 2 domains: a
C-terminal flavin-binding domain, which includes the
active site for lacate oxidation, and an N-terminal
b2-cytochrome domain, required for efficient cytochrome
c reduction. FCB2 is a homotetramer and contains two
noncovalently bound cofactors, FMN and heme per subunit.
Length = 344
Score = 33.3 bits (77), Expect = 0.079
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 6/37 (16%)
Query: 150 NRESFQRFRLRMAIL------DLNVAILGENFKLLLY 180
N E+FQR R R +L D + ILG L +
Sbjct: 32 NLEAFQRIRFRPRVLRDVEKVDTSTTILGHKVSLPFF 68
>gnl|CDD|218499 pfam05208, ALG3, ALG3 protein. The formation of N-glycosidic
linkages of glycoproteins involves the ordered assembly
of the common Glc3Man9GlcNAc2 core-oligosaccharide on
the lipid carrier dolichyl pyrophosphate. Whereas early
mannosylation steps occur on the cytoplasmic side of the
endoplasmic reticulum with GDP-Man as donor, the final
reactions from Man5GlcNAc2-PP-Dol to Man9GlcNAc2-PP-Dol
on the lumenal side use Dol-P-Man. ALG3 gene encodes the
Dol-P-Man:Man5GlcNAc2-PP-Dol mannosyltransferase.
Length = 368
Score = 33.2 bits (76), Expect = 0.088
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
Query: 130 HNIIVLVEF--AIALVTILDQINRESFQRFRLRMAILDLNVAILGENFKLLLYLPTYLIF 187
H+I VL F A++ + IN QR+ L + L V++ +LLY P L+
Sbjct: 120 HSIFVLRLFNDCFAMLLLYLAINLFLDQRWTLGSLLYSLAVSV---KMNVLLYAPALLLL 176
Query: 188 FLQQ 191
L
Sbjct: 177 LLAN 180
>gnl|CDD|233816 TIGR02302, aProt_lowcomp, TIGR02302 family protein. Members of
this family are long (~850 residue) bacterial proteins
from the alpha Proteobacteria. Each has 2-3 predicted
transmembrane helices near the N-terminus and a long
C-terminal region that includes stretches of
Gln/Gly-rich low complexity sequence, predicted by TMHMM
to be outside the membrane. In Bradyrhizobium japonicum,
two tandem reading frames are together homologous the
single members found in other species; the cutoffs
scores are set low enough that the longer scores above
the trusted cutoff and the shorter above the noise
cutoff for this model.
Length = 851
Score = 33.0 bits (75), Expect = 0.14
Identities = 21/102 (20%), Positives = 42/102 (41%)
Query: 10 QQQQQQQQQQQQQQQQQQQQQQQHRQQQKQHIKLDTGTEHDCVQDDNGNGRGFDSHSGAN 69
Q Q QQ Q +QQ + +++Q ++ +T + D G+ + + G +
Sbjct: 607 QPGQGQQMGDQSGDMEQQMNKLGELMRKQQQLRDETFKLDQDQRRDRMRGQDGEQNFGDD 666
Query: 70 FILQQQQQQQQQQQQQQQQQQQQQQQHRHRQQQKQHIKLDKG 111
Q Q Q + ++ QQ++ R Q + +K + G
Sbjct: 667 MPQQDGQPNGQPNLHDRLRKLQQEEAKRGLGQSQGGLKGELG 708
Score = 30.7 bits (69), Expect = 0.79
Identities = 23/102 (22%), Positives = 31/102 (30%), Gaps = 1/102 (0%)
Query: 3 AELSSLLQQQQQQQQQQQQQQQQQQQQQQQHRQQQKQHIKLDTGTEHDCVQDDNGNGRGF 62
E L Q Q + + Q Q Q + G + D NG+G
Sbjct: 690 EEAKRGLGQSQGGLKGELGQLGQGLQNLGIQPGKGFDQADSAMGDAEGALGDGNGDG-AV 748
Query: 63 DSHSGANFILQQQQQQQQQQQQQQQQQQQQQQQHRHRQQQKQ 104
DS A L+Q Q + QQ Q Q R +
Sbjct: 749 DSQGRALEALRQGAQDMMEAMQQGDGDGQGDGQGRQQSGANG 790
>gnl|CDD|221416 pfam12090, Spt20, Spt20 family. This presumed domain is found in
the Spt20 proteins from both human and yeast. The Spt20
protein is part of the SAGA complex which is a large
cmplex mediating histone deacetylation. Yeast Spt20 has
been shown to play a role in structural integrity of the
SAGA complex as as no intact SAGA could be purified in
spt20 deletion strains.
Length = 191
Score = 32.0 bits (73), Expect = 0.15
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQRTMSEQCK--IRSTIVIRPN 232
QQQ Q Q Q+QQ ++ Q QQ + K ++RP
Sbjct: 91 QQQAQAQSQEQQDKENSPAQNQQADGQKQKPVKKPRVYRTLLRPT 135
Score = 29.3 bits (66), Expect = 1.2
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 10 QQQQQQQQQQQQQQQQQQQQQQQHRQQQKQHIK 42
QQQ Q Q Q+QQ ++ Q QQ Q+++ +K
Sbjct: 91 QQQAQAQSQEQQDKENSPAQNQQADGQKQKPVK 123
Score = 28.5 bits (64), Expect = 2.5
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 9 LQQQQQQQQQQQQQQQQQQQQQQQHRQQQKQHIK 42
QQ Q Q Q+QQ ++ Q QQ Q+QK K
Sbjct: 91 QQQAQAQSQEQQDKENSPAQNQQADGQKQKPVKK 124
Score = 28.1 bits (63), Expect = 3.3
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 10 QQQQQQQQQQQQQQQQQQQQQQQHRQQQKQ 39
QQQ Q Q Q+QQ ++ Q Q QKQ
Sbjct: 90 SQQQAQAQSQEQQDKENSPAQNQQADGQKQ 119
Score = 27.8 bits (62), Expect = 3.8
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 2 TAELSSLLQQQQQQQQQQQQQQQQQQQQQQQHRQQQKQ 39
T S Q Q Q Q+QQ ++ Q QQ ++Q+
Sbjct: 85 TVPQQSQQQAQAQSQEQQDKENSPAQNQQADGQKQKPV 122
Score = 27.4 bits (61), Expect = 5.7
Identities = 10/37 (27%), Positives = 16/37 (43%)
Query: 1 MTAELSSLLQQQQQQQQQQQQQQQQQQQQQQQHRQQQ 37
+ S Q Q Q+QQ ++ Q QQ +Q+
Sbjct: 85 TVPQQSQQQAQAQSQEQQDKENSPAQNQQADGQKQKP 121
Score = 27.0 bits (60), Expect = 6.9
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 69 NFILQQQQQQQQQQQQQQQQQQQQQQQHRHRQQQKQ 104
N + QQ QQQ Q Q Q+QQ ++ Q++ QKQ
Sbjct: 84 NTVPQQSQQQAQAQSQEQQDKENSPAQNQQADGQKQ 119
Score = 27.0 bits (60), Expect = 7.5
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 73 QQQQQQQQQQQQQQQQQQQQQQQHRHRQQQKQHIK 107
QQQ Q Q Q+QQ ++ Q Q Q+QK K
Sbjct: 90 SQQQAQAQSQEQQDKENSPAQNQQADGQKQKPVKK 124
>gnl|CDD|217469 pfam03276, Gag_spuma, Spumavirus gag protein.
Length = 582
Score = 32.6 bits (74), Expect = 0.15
Identities = 21/95 (22%), Positives = 38/95 (40%), Gaps = 3/95 (3%)
Query: 10 QQQQQQQQQQQQQQQQQQQQQQQHRQQQKQHIKLDTGTEHDCVQDDNGNGRGFDSHSGAN 69
Q+ + Q Q Q++QQ + +Q Q +QQ+ + + G++
Sbjct: 455 QRGPRSQPQNQRRQQNRGRQSSQPPRQQQNRSNQNNQRQSQGPNQGPRGQGGYNLRPRTY 514
Query: 70 FILQQQQQQQQQQQQQQQQQQQQQQQHRHRQQQKQ 104
Q Q+ Q ++ +Q Q R +QQQ Q
Sbjct: 515 ---QPQRYGGGQGRRWNPNPYRQSGQGRSQQQQPQ 546
Score = 28.0 bits (62), Expect = 5.7
Identities = 14/53 (26%), Positives = 19/53 (35%)
Query: 52 VQDDNGNGRGFDSHSGANFILQQQQQQQQQQQQQQQQQQQQQQQHRHRQQQKQ 104
Q D G Q Q Q++QQ + +Q Q +QQ Q Q
Sbjct: 439 PQSDQQRPVSRGRGRGQRGPRSQPQNQRRQQNRGRQSSQPPRQQQNRSNQNNQ 491
>gnl|CDD|221581 pfam12446, DUF3682, Protein of unknown function (DUF3682). This
domain family is found in eukaryotes, and is typically
between 125 and 136 amino acids in length.
Length = 133
Score = 30.9 bits (70), Expect = 0.21
Identities = 10/26 (38%), Positives = 19/26 (73%)
Query: 73 QQQQQQQQQQQQQQQQQQQQQQQHRH 98
++++++ ++QQQ + Q QQ QQH H
Sbjct: 99 EEEEEENEKQQQSDEAQVQQHQQHEH 124
Score = 28.2 bits (63), Expect = 1.7
Identities = 9/24 (37%), Positives = 18/24 (75%)
Query: 10 QQQQQQQQQQQQQQQQQQQQQQQH 33
++++++ ++QQQ + Q QQ QQH
Sbjct: 99 EEEEEENEKQQQSDEAQVQQHQQH 122
Score = 27.9 bits (62), Expect = 2.7
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 10 QQQQQQQQQQQQQQQQQQQQQQQH 33
++++ ++QQQ + Q QQ QQ +H
Sbjct: 101 EEEENEKQQQSDEAQVQQHQQHEH 124
Score = 27.5 bits (61), Expect = 4.1
Identities = 11/31 (35%), Positives = 23/31 (74%), Gaps = 2/31 (6%)
Query: 10 QQQQQQQQQQQQQQQQQQQQQQQHRQQQKQH 40
Q++++++++ ++QQQ + Q QQH QQ +H
Sbjct: 96 QEEEEEEEENEKQQQSDEAQVQQH--QQHEH 124
Score = 26.7 bits (59), Expect = 6.8
Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 4/40 (10%)
Query: 66 SGANFILQQQQQQQQQQQQQQQQQQQQQQQHRHRQQQKQH 105
SG Q++++++++ ++QQQ + Q QQH QQ +H
Sbjct: 89 SGTGHTRQEEEEEEEENEKQQQSDEAQVQQH----QQHEH 124
>gnl|CDD|113452 pfam04684, BAF1_ABF1, BAF1 / ABF1 chromatin reorganising factor.
ABF1 is a sequence-specific DNA binding protein involved
in transcription activation, gene silencing and
initiation of DNA replication. ABF1 is known to remodel
chromatin, and it is proposed that it mediates its
effects on transcription and gene expression by
modifying local chromatin architecture. These functions
require a conserved stretch of 20 amino acids in the
C-terminal region of ABF1 (amino acids 639 to 662 S.
cerevisiae). The N-terminal two thirds of the protein
are necessary for DNA binding, and the N-terminus (amino
acids 9 to 91 in S. cerevisiae) is thought to contain a
novel zinc-finger motif which may stabilise the protein
structure.
Length = 508
Score = 32.4 bits (73), Expect = 0.21
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 65 HSGANFILQQQQQQQQQQQQQQQQQQQQQQQHRHRQQQKQHI 106
H + Q Q + Q Q Q QQQ +H++Q +QH+
Sbjct: 298 HHPSIPAHHQHQLPEGHQHDHQHHHQHQQQDLQHQEQHQQHV 339
Score = 31.6 bits (71), Expect = 0.30
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 10 QQQQQQQQQQQQQQQQQQQQQQQHRQQQKQHIKLDTGTEHD 50
Q + Q Q Q QQQ QH++Q +QH+ D D
Sbjct: 308 HQLPEGHQHDHQHHHQHQQQDLQHQEQHQQHVDNDHHVYQD 348
Score = 28.9 bits (64), Expect = 2.6
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 4 ELSSLLQQQQQQQQQQQQQQQQQQQQQQQH 33
+L Q Q Q QQQ Q Q+Q QQH
Sbjct: 309 QLPEGHQHDHQHHHQHQQQDLQHQEQHQQH 338
Score = 27.8 bits (61), Expect = 5.6
Identities = 11/25 (44%), Positives = 12/25 (48%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQ 214
Q Q Q QQQ Q Q+Q QQ
Sbjct: 314 HQHDHQHHHQHQQQDLQHQEQHQQH 338
>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor
protein; Reviewed.
Length = 782
Score = 32.5 bits (75), Expect = 0.21
Identities = 4/37 (10%), Positives = 26/37 (70%)
Query: 3 AELSSLLQQQQQQQQQQQQQQQQQQQQQQQHRQQQKQ 39
E +LL++ ++ +++ ++++++ Q+++ + ++ ++
Sbjct: 537 EEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEK 573
Score = 29.0 bits (66), Expect = 2.1
Identities = 3/36 (8%), Positives = 24/36 (66%)
Query: 68 ANFILQQQQQQQQQQQQQQQQQQQQQQQHRHRQQQK 103
A +L++ ++ +++ ++++++ Q+++ + +++
Sbjct: 539 AEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKE 574
>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated
ATPase domains [General function prediction only].
Length = 530
Score = 32.2 bits (74), Expect = 0.22
Identities = 6/28 (21%), Positives = 19/28 (67%)
Query: 187 FFLQQQQQQQQQQQQQQQQQQQQQQQQQ 214
+L+Q+ ++ +Q+ ++QQ++ ++Q
Sbjct: 237 SYLEQKAERLRQEAAAYEKQQKELAKEQ 264
Score = 28.8 bits (65), Expect = 3.1
Identities = 10/48 (20%), Positives = 24/48 (50%), Gaps = 10/48 (20%)
Query: 73 QQQQQQQQQQQQQQQQQQQQQQQHRHRQ---------QQKQHIK-LDK 110
+ ++ +Q+ ++QQ++ ++Q R+ + K IK L+K
Sbjct: 242 KAERLRQEAAAYEKQQKELAKEQEWIRRGKAAASKAKKAKSRIKRLEK 289
Score = 28.4 bits (64), Expect = 3.7
Identities = 7/27 (25%), Positives = 18/27 (66%)
Query: 6 SSLLQQQQQQQQQQQQQQQQQQQQQQQ 32
SS L+Q+ ++ +Q+ ++QQ++ +
Sbjct: 236 SSYLEQKAERLRQEAAAYEKQQKELAK 262
Score = 28.0 bits (63), Expect = 5.1
Identities = 5/26 (19%), Positives = 18/26 (69%)
Query: 13 QQQQQQQQQQQQQQQQQQQQHRQQQK 38
+Q+ ++ +Q+ ++QQ++ ++Q+
Sbjct: 240 EQKAERLRQEAAAYEKQQKELAKEQE 265
>gnl|CDD|227911 COG5624, TAF61, Transcription initiation factor TFIID, subunit
TAF12 (also component of histone acetyltransferase SAGA)
[Transcription].
Length = 505
Score = 32.0 bits (72), Expect = 0.23
Identities = 9/40 (22%), Positives = 19/40 (47%)
Query: 192 QQQQQQQQQQQQQQQQQQQQQQQRTMSEQCKIRSTIVIRP 231
+++ + Q QQ Q+Q QQR + + ++ + P
Sbjct: 227 KRRLVDRYPQFQQGQKQVLSPQQRFLHGMERYEASGMPPP 266
Score = 30.4 bits (68), Expect = 0.78
Identities = 7/29 (24%), Positives = 12/29 (41%)
Query: 11 QQQQQQQQQQQQQQQQQQQQQQHRQQQKQ 39
+++ + Q QQ Q+Q Q R
Sbjct: 227 KRRLVDRYPQFQQGQKQVLSPQQRFLHGM 255
Score = 30.4 bits (68), Expect = 0.87
Identities = 8/37 (21%), Positives = 16/37 (43%)
Query: 3 AELSSLLQQQQQQQQQQQQQQQQQQQQQQQHRQQQKQ 39
A + + +++ + Q QQ Q+Q QQ+
Sbjct: 215 AGGVYGVHDGRSKRRLVDRYPQFQQGQKQVLSPQQRF 251
Score = 29.7 bits (66), Expect = 1.4
Identities = 11/52 (21%), Positives = 20/52 (38%)
Query: 53 QDDNGNGRGFDSHSGANFILQQQQQQQQQQQQQQQQQQQQQQQHRHRQQQKQ 104
Q+ G G G + +++ + Q QQ Q+Q Q R ++
Sbjct: 206 QEMMGLGIMAGGVYGVHDGRSKRRLVDRYPQFQQGQKQVLSPQQRFLHGMER 257
Score = 29.3 bits (65), Expect = 1.7
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQ 214
+++ + Q QQ Q+Q QQ+
Sbjct: 227 KRRLVDRYPQFQQGQKQVLSPQQRF 251
Score = 29.3 bits (65), Expect = 2.0
Identities = 8/38 (21%), Positives = 11/38 (28%)
Query: 189 LQQQQQQQQQQQQQQQQQQQQQQQQQRTMSEQCKIRST 226
L + Q QQ Q+Q QQ+
Sbjct: 230 LVDRYPQFQQGQKQVLSPQQRFLHGMERYEASGMPPPA 267
Score = 28.9 bits (64), Expect = 2.3
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQRTM 217
++ + Q QQ Q+Q QQ+ M
Sbjct: 228 RRLVDRYPQFQQGQKQVLSPQQRFLHGM 255
Score = 28.9 bits (64), Expect = 2.7
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 10 QQQQQQQQQQQQQQQQQQQQQQQHRQQQK 38
+ + Q QQ Q+Q QQ+ ++
Sbjct: 229 RLVDRYPQFQQGQKQVLSPQQRFLHGMER 257
Score = 28.5 bits (63), Expect = 2.9
Identities = 7/30 (23%), Positives = 14/30 (46%)
Query: 10 QQQQQQQQQQQQQQQQQQQQQQQHRQQQKQ 39
++ + Q QQ Q+Q QQ+ ++
Sbjct: 228 RRLVDRYPQFQQGQKQVLSPQQRFLHGMER 257
Score = 28.5 bits (63), Expect = 3.5
Identities = 9/40 (22%), Positives = 18/40 (45%)
Query: 1 MTAELSSLLQQQQQQQQQQQQQQQQQQQQQQQHRQQQKQH 40
M + + + +++ + Q QQ Q+Q QQ+ H
Sbjct: 214 MAGGVYGVHDGRSKRRLVDRYPQFQQGQKQVLSPQQRFLH 253
Score = 28.1 bits (62), Expect = 5.1
Identities = 6/38 (15%), Positives = 13/38 (34%)
Query: 11 QQQQQQQQQQQQQQQQQQQQQQHRQQQKQHIKLDTGTE 48
+ +++ + Q QQ +Q + G E
Sbjct: 219 YGVHDGRSKRRLVDRYPQFQQGQKQVLSPQQRFLHGME 256
Score = 27.7 bits (61), Expect = 6.3
Identities = 5/32 (15%), Positives = 12/32 (37%)
Query: 10 QQQQQQQQQQQQQQQQQQQQQQQHRQQQKQHI 41
+ +++ + Q QQ Q+ +Q
Sbjct: 220 GVHDGRSKRRLVDRYPQFQQGQKQVLSPQQRF 251
Score = 27.3 bits (60), Expect = 7.5
Identities = 6/33 (18%), Positives = 15/33 (45%)
Query: 191 QQQQQQQQQQQQQQQQQQQQQQQQRTMSEQCKI 223
+ +++ + Q QQ Q++ +S Q +
Sbjct: 219 YGVHDGRSKRRLVDRYPQFQQGQKQVLSPQQRF 251
>gnl|CDD|225803 COG3264, COG3264, Small-conductance mechanosensitive channel [Cell
envelope biogenesis, outer membrane].
Length = 835
Score = 32.4 bits (74), Expect = 0.23
Identities = 19/103 (18%), Positives = 39/103 (37%), Gaps = 5/103 (4%)
Query: 3 AELSSLLQQQQQQQQQQQQQQQQQQQQQQQH-RQQQKQHIKLDTGTEHDCVQDDNGNGRG 61
A L L + ++Q++ + ++ + Q + +Q+ + +L Q + N
Sbjct: 29 AALQLLQEAVNSKRQEEAEPAAEEAELQAELIQQELAINDQLSQALN---QQTERLNALA 85
Query: 62 FDSHSGANFILQQQQQQQQQQQQQQQQQQQQQQQHRHRQQQKQ 104
D AN +L Q Q + ++Q + R QQ
Sbjct: 86 SDDRQLAN-LLLQLLQSSRTIREQIAVLRGSLLLSRILLQQLG 127
Score = 29.3 bits (66), Expect = 2.2
Identities = 25/162 (15%), Positives = 56/162 (34%), Gaps = 33/162 (20%)
Query: 72 LQQQQQQQQQQQQQQQQQQQQQQQHRHRQQQKQHIKLDKGTEHVFKTTMVMEIGKQAEHN 131
LQ+ ++Q++ + ++ + Q +Q+ + +L + Q
Sbjct: 34 LQEAVNSKRQEEAEPAAEEAELQAELIQQELAINDQLSQAL-------------NQQTER 80
Query: 132 IIVLVEFAIALVTILDQIN------RESFQRFRLRMAILDLNVAILGENFKLLLYLPTYL 185
+ L L +L Q+ RE R + + + + LG LP
Sbjct: 81 LNALASDDRQLANLLLQLLQSSRTIREQIAVLRGSLLLSRILLQQLGP-------LPEAG 133
Query: 186 ----IFFLQQQQQQQQQQQQQQQQQQQQQQQ---QQRTMSEQ 220
F + Q++ Q ++ + Q +Q + R + +Q
Sbjct: 134 QPQEQFEVTQERDALQAEKAYINALEGQAEQLTAEVRDILDQ 175
>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y. Members of this family are
RNase Y, an endoribonuclease. The member from Bacillus
subtilis, YmdA, has been shown to be involved in
turnover of yitJ riboswitch [Transcription, Degradation
of RNA].
Length = 514
Score = 32.2 bits (74), Expect = 0.24
Identities = 10/101 (9%), Positives = 49/101 (48%), Gaps = 15/101 (14%)
Query: 3 AELSSLLQQQQQQQQQQQQQQQQQQQQQQQHRQQQKQHIKLDTGTEHDCVQDDNGNGRGF 62
A L + + + + + +++ ++++ + Q+ R+ ++ LD E +++N
Sbjct: 52 ALLEAKEEVHKLRAELERELKERRNELQRLERRLLQREETLDRKMESLDKKEEN------ 105
Query: 63 DSHSGANFILQQQQQQQQQQQQQQQQQQQQQQQHRHRQQQK 103
L++++++ +++ +++++ ++ Q+++
Sbjct: 106 ---------LEKKEKELSNKEKNLDEKEEELEELIAEQREE 137
Score = 28.4 bits (64), Expect = 4.0
Identities = 2/39 (5%), Positives = 24/39 (61%)
Query: 1 MTAELSSLLQQQQQQQQQQQQQQQQQQQQQQQHRQQQKQ 39
+ + +L +++++ +++ +++++ ++ +Q+++
Sbjct: 99 LDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQREE 137
>gnl|CDD|234342 TIGR03752, conj_TIGR03752, integrating conjugative element protein,
PFL_4705 family. Members of this protein family are
found occasionally on plasmids such as the Pseudomonas
putida toluene catabolic TOL plasmid pWWO_p085. Usually,
however, they are found on the bacterial main chromosome
in regions flanked by markers of conjugative transfer
and/or transposition [Mobile and extrachromosomal
element functions, Plasmid functions].
Length = 472
Score = 31.9 bits (73), Expect = 0.25
Identities = 17/85 (20%), Positives = 27/85 (31%)
Query: 11 QQQQQQQQQQQQQQQQQQQQQQHRQQQKQHIKLDTGTEHDCVQDDNGNGRGFDSHSGANF 70
Q + Q+ ++ +Q + ++QQ Q Q Q T D G G D GA F
Sbjct: 108 QSETQELTKEIEQLKSERQQLQGLIDQLQRRLAGVLTGPSGGGSDLPVGLGLDPGGGAQF 167
Query: 71 ILQQQQQQQQQQQQQQQQQQQQQQQ 95
+ Q +
Sbjct: 168 EGGGGVVWVEPQDALPTDRNGNSGA 192
Score = 28.8 bits (65), Expect = 2.9
Identities = 7/30 (23%), Positives = 16/30 (53%)
Query: 189 LQQQQQQQQQQQQQQQQQQQQQQQQQRTMS 218
L ++ +Q + ++QQ Q Q Q++ +
Sbjct: 114 LTKEIEQLKSERQQLQGLIDQLQRRLAGVL 143
Score = 28.1 bits (63), Expect = 4.6
Identities = 11/94 (11%), Positives = 35/94 (37%), Gaps = 21/94 (22%)
Query: 2 TAELSSLLQQQQQQQQQQQQQQQQQQQQQQQHRQQQKQHIKLDTGTEHDCVQDDNGNGRG 61
AE+ L ++ + + + + + ++ Q+ ++ + + +
Sbjct: 65 VAEVKELRKRLAKLISENEALKAENERLQK---------------------REQSIDQQI 103
Query: 62 FDSHSGANFILQQQQQQQQQQQQQQQQQQQQQQQ 95
+ L ++ +Q + ++QQ Q Q Q+
Sbjct: 104 QQAVQSETQELTKEIEQLKSERQQLQGLIDQLQR 137
Score = 27.3 bits (61), Expect = 7.6
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 74 QQQQQQQQQQQQQQQQQQQQQQHR 97
++ +Q + ++QQ Q Q Q R
Sbjct: 115 TKEIEQLKSERQQLQGLIDQLQRR 138
Score = 27.3 bits (61), Expect = 7.7
Identities = 8/31 (25%), Positives = 18/31 (58%)
Query: 74 QQQQQQQQQQQQQQQQQQQQQQHRHRQQQKQ 104
Q + Q+ ++ +Q + ++QQ Q Q Q++
Sbjct: 108 QSETQELTKEIEQLKSERQQLQGLIDQLQRR 138
Score = 27.3 bits (61), Expect = 7.7
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQR 215
Q+ ++ +Q + ++QQ Q Q QR
Sbjct: 112 QELTKEIEQLKSERQQLQGLIDQLQR 137
Score = 26.9 bits (60), Expect = 9.7
Identities = 6/31 (19%), Positives = 16/31 (51%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQRTMSEQ 220
++ +Q + ++QQ Q Q Q++ ++
Sbjct: 116 KEIEQLKSERQQLQGLIDQLQRRLAGVLTGP 146
>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell
envelope biogenesis, outer membrane].
Length = 387
Score = 31.8 bits (72), Expect = 0.28
Identities = 20/94 (21%), Positives = 47/94 (50%), Gaps = 7/94 (7%)
Query: 11 QQQQQQQQQQQQQQQQQQQQQQHRQQQKQHIKLDTGTEHDCVQDDNGNGRGFDSHSGANF 70
QQ + Q QQ ++ +QQ+++ +Q + +K E + + + +
Sbjct: 62 QQYGRIQSQQSSAKKGEQQRKKKEEQVAEELKPKQAAEQERL-------KQLEKERLKAQ 114
Query: 71 ILQQQQQQQQQQQQQQQQQQQQQQQHRHRQQQKQ 104
Q+Q ++ ++Q Q +Q+QQ++Q + +Q+K+
Sbjct: 115 EQQKQAEEAEKQAQLEQKQQEEQARKAAAEQKKK 148
Score = 31.8 bits (72), Expect = 0.30
Identities = 18/95 (18%), Positives = 43/95 (45%)
Query: 10 QQQQQQQQQQQQQQQQQQQQQQQHRQQQKQHIKLDTGTEHDCVQDDNGNGRGFDSHSGAN 69
QQ + Q QQ ++ +QQ++++ Q ++ + Q + + + A
Sbjct: 62 QQYGRIQSQQSSAKKGEQQRKKKEEQVAEELKPKQAAEQERLKQLEKERLKAQEQQKQAE 121
Query: 70 FILQQQQQQQQQQQQQQQQQQQQQQQHRHRQQQKQ 104
+Q Q +Q+QQ++Q ++ +Q++ + K
Sbjct: 122 EAEKQAQLEQKQQEEQARKAAAEQKKKAEAAKAKA 156
Score = 27.6 bits (61), Expect = 6.8
Identities = 12/35 (34%), Positives = 25/35 (71%)
Query: 189 LQQQQQQQQQQQQQQQQQQQQQQQQQRTMSEQCKI 223
+QQ+Q ++ ++Q Q +Q+QQ++Q ++ +EQ K
Sbjct: 114 QEQQKQAEEAEKQAQLEQKQQEEQARKAAAEQKKK 148
Score = 27.2 bits (60), Expect = 8.7
Identities = 11/37 (29%), Positives = 25/37 (67%)
Query: 3 AELSSLLQQQQQQQQQQQQQQQQQQQQQQQHRQQQKQ 39
AE L Q ++++ + Q+QQ+Q ++ ++Q +Q++Q
Sbjct: 98 AEQERLKQLEKERLKAQEQQKQAEEAEKQAQLEQKQQ 134
>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106). This
family of proteins are found in large numbers in the
Trichomonas vaginalis proteome. The function of this
protein is unknown.
Length = 422
Score = 31.6 bits (71), Expect = 0.31
Identities = 23/97 (23%), Positives = 28/97 (28%), Gaps = 31/97 (31%)
Query: 10 QQQQQQQQQQQQQQQQQQQQQQQHRQQQKQHIKLDTGTEHDCVQDDNGNGRGFDSHSGAN 69
+ QQ Q QQ Q QQ +QQ +Q
Sbjct: 202 KPTQQPTVQNPAQQPTVQNPAQQPQQQPQQQ----------------------------- 232
Query: 70 FILQQQQQQQQQQQQQQQQQQQQQQQHRHRQQQKQHI 106
Q QQ Q QQ Q +Q R R+Q Q
Sbjct: 233 --PVQPAQQPTPQNPAQQPPQTEQGHKRSREQGNQEF 267
Score = 28.9 bits (64), Expect = 2.7
Identities = 17/37 (45%), Positives = 18/37 (48%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQRTMSEQCKIRST 226
Q QQQ QQQ Q QQ Q QQ +EQ RS
Sbjct: 224 QPQQQPQQQPVQPAQQPTPQNPAQQPPQTEQGHKRSR 260
Score = 27.3 bits (60), Expect = 8.1
Identities = 14/45 (31%), Positives = 19/45 (42%)
Query: 73 QQQQQQQQQQQQQQQQQQQQQQQHRHRQQQKQHIKLDKGTEHVFK 117
QQQ QQQ Q QQ Q Q + +Q ++G + K
Sbjct: 225 PQQQPQQQPVQPAQQPTPQNPAQQPPQTEQGHKRSREQGNQEFLK 269
>gnl|CDD|237191 PRK12757, PRK12757, cell division protein FtsN; Provisional.
Length = 256
Score = 31.2 bits (71), Expect = 0.40
Identities = 11/35 (31%), Positives = 13/35 (37%)
Query: 71 ILQQQQQQQQQQQQQQQQQQQQQQQHRHRQQQKQH 105
I QQ QQQQ Q Q +Q Q +
Sbjct: 121 IQQQAQQQQPPATTAQPQPVTPPRQTTAPVQPQTP 155
Score = 30.8 bits (70), Expect = 0.53
Identities = 13/33 (39%), Positives = 14/33 (42%)
Query: 7 SLLQQQQQQQQQQQQQQQQQQQQQQQHRQQQKQ 39
S +Q QQQ QQQQ Q Q RQ
Sbjct: 117 STVQIQQQAQQQQPPATTAQPQPVTPPRQTTAP 149
Score = 30.8 bits (70), Expect = 0.53
Identities = 11/31 (35%), Positives = 13/31 (41%)
Query: 10 QQQQQQQQQQQQQQQQQQQQQQQHRQQQKQH 40
+ Q QQQ QQQQ Q Q +Q
Sbjct: 116 RSTVQIQQQAQQQQPPATTAQPQPVTPPRQT 146
Score = 30.4 bits (69), Expect = 0.70
Identities = 10/36 (27%), Positives = 12/36 (33%)
Query: 5 LSSLLQQQQQQQQQQQQQQQQQQQQQQQHRQQQKQH 40
+ Q QQQQ Q Q +Q Q Q
Sbjct: 119 VQIQQQAQQQQPPATTAQPQPVTPPRQTTAPVQPQT 154
Score = 29.2 bits (66), Expect = 1.6
Identities = 12/34 (35%), Positives = 13/34 (38%)
Query: 71 ILQQQQQQQQQQQQQQQQQQQQQQQHRHRQQQKQ 104
+Q QQQ QQQQ Q Q R Q
Sbjct: 118 TVQIQQQAQQQQPPATTAQPQPVTPPRQTTAPVQ 151
Score = 29.2 bits (66), Expect = 1.7
Identities = 8/31 (25%), Positives = 10/31 (32%)
Query: 10 QQQQQQQQQQQQQQQQQQQQQQQHRQQQKQH 40
QQQQ Q Q +Q Q +
Sbjct: 125 AQQQQPPATTAQPQPVTPPRQTTAPVQPQTP 155
Score = 28.9 bits (65), Expect = 1.9
Identities = 10/34 (29%), Positives = 13/34 (38%)
Query: 6 SSLLQQQQQQQQQQQQQQQQQQQQQQQHRQQQKQ 39
S++ QQQ QQQQ Q Q +
Sbjct: 117 STVQIQQQAQQQQPPATTAQPQPVTPPRQTTAPV 150
Score = 28.9 bits (65), Expect = 2.0
Identities = 10/33 (30%), Positives = 13/33 (39%)
Query: 73 QQQQQQQQQQQQQQQQQQQQQQQHRHRQQQKQH 105
+ Q QQQ QQQQ Q + +Q
Sbjct: 114 VPRSTVQIQQQAQQQQPPATTAQPQPVTPPRQT 146
Score = 28.9 bits (65), Expect = 2.1
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 189 LQQQQQQQQQQQQQQQQQQQQQQQQQRTMSEQ 220
+Q QQQ QQQQ Q Q ++T +
Sbjct: 119 VQIQQQAQQQQPPATTAQPQPVTPPRQTTAPV 150
Score = 28.5 bits (64), Expect = 2.5
Identities = 10/32 (31%), Positives = 12/32 (37%)
Query: 189 LQQQQQQQQQQQQQQQQQQQQQQQQQRTMSEQ 220
QQ QQQQ Q Q +Q + Q
Sbjct: 122 QQQAQQQQPPATTAQPQPVTPPRQTTAPVQPQ 153
Score = 28.1 bits (63), Expect = 3.2
Identities = 11/26 (42%), Positives = 12/26 (46%)
Query: 191 QQQQQQQQQQQQQQQQQQQQQQQQRT 216
+ Q QQQ QQQQ Q Q T
Sbjct: 116 RSTVQIQQQAQQQQPPATTAQPQPVT 141
Score = 28.1 bits (63), Expect = 3.8
Identities = 11/33 (33%), Positives = 13/33 (39%)
Query: 73 QQQQQQQQQQQQQQQQQQQQQQQHRHRQQQKQH 105
+ Q QQQ QQQQ Q Q +Q
Sbjct: 116 RSTVQIQQQAQQQQPPATTAQPQPVTPPRQTTA 148
Score = 28.1 bits (63), Expect = 3.8
Identities = 9/34 (26%), Positives = 12/34 (35%)
Query: 71 ILQQQQQQQQQQQQQQQQQQQQQQQHRHRQQQKQ 104
+ QQQ QQQQ Q Q + +
Sbjct: 119 VQIQQQAQQQQPPATTAQPQPVTPPRQTTAPVQP 152
Score = 28.1 bits (63), Expect = 4.0
Identities = 22/113 (19%), Positives = 32/113 (28%), Gaps = 39/113 (34%)
Query: 1 MTAELSSLLQQQQQQQQQQQQQ------QQQQQQQQQQHRQQQKQHIKLDTGTEHDCVQD 54
+T E LL+Q Q +QQ Q +Q Q + Q Q+Q
Sbjct: 80 LTDEQRQLLEQMQADMRQQPTQLSEVPYNEQTPQVPRSTVQIQQQ--------------- 124
Query: 55 DNGNGRGFDSHSGANFILQQQQQQQQQQQQQQQQQQQQQQQHRHRQQQKQHIK 107
QQQQ Q Q +Q + Q ++
Sbjct: 125 ------------------AQQQQPPATTAQPQPVTPPRQTTAPVQPQTPAPVR 159
Score = 27.7 bits (62), Expect = 5.2
Identities = 7/31 (22%), Positives = 10/31 (32%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQRTMSEQ 220
QQQQ Q Q +Q + +
Sbjct: 126 QQQQPPATTAQPQPVTPPRQTTAPVQPQTPA 156
Score = 27.3 bits (61), Expect = 5.9
Identities = 19/104 (18%), Positives = 26/104 (25%), Gaps = 32/104 (30%)
Query: 10 QQQQQQQQQQQQQQQQQQQQQQQHRQQQKQHIKLDTGTEHDCVQDDNGNGRGFDSHSGAN 69
+Q Q + Q QQQ QQQQ Q Q
Sbjct: 109 EQTPQVPRSTVQIQQQAQQQQPPATTAQPQ------------------------------ 138
Query: 70 FILQQQQQQQQQQQQQQQQQQQQQQQHRHRQQQKQHIKLDKGTE 113
+Q Q Q + Q Q + K++ E
Sbjct: 139 --PVTPPRQTTAPVQPQTPAPVRTQPAAPVTQAVEAPKVEAEKE 180
Score = 27.3 bits (61), Expect = 6.0
Identities = 12/31 (38%), Positives = 13/31 (41%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQRTMSEQ 220
QQQ QQQQ Q Q +Q T Q
Sbjct: 121 IQQQAQQQQPPATTAQPQPVTPPRQTTAPVQ 151
Score = 27.3 bits (61), Expect = 6.7
Identities = 10/27 (37%), Positives = 11/27 (40%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQRT 216
+ Q QQQ QQQQ Q Q
Sbjct: 114 VPRSTVQIQQQAQQQQPPATTAQPQPV 140
Score = 27.3 bits (61), Expect = 7.5
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQRTM 217
+Q Q + Q QQQ QQQQ T
Sbjct: 108 NEQTPQVPRSTVQIQQQAQQQQPPATTA 135
Score = 26.9 bits (60), Expect = 7.8
Identities = 10/26 (38%), Positives = 11/26 (42%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQR 215
Q + Q QQQ QQQQ Q
Sbjct: 112 PQVPRSTVQIQQQAQQQQPPATTAQP 137
Score = 26.9 bits (60), Expect = 8.3
Identities = 10/31 (32%), Positives = 12/31 (38%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQRTMSEQ 220
+ Q QQQ QQQQ Q Q +
Sbjct: 116 RSTVQIQQQAQQQQPPATTAQPQPVTPPRQT 146
Score = 26.9 bits (60), Expect = 9.5
Identities = 10/37 (27%), Positives = 13/37 (35%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQRTMSEQCKIRST 226
+Q Q + Q QQQ QQQQ +
Sbjct: 109 EQTPQVPRSTVQIQQQAQQQQPPATTAQPQPVTPPRQ 145
>gnl|CDD|191602 pfam06752, E_Pc_C, Enhancer of Polycomb C-terminus. This family
represents the C-terminus of eukaryotic enhancer of
polycomb proteins, which have roles in heterochromatin
formation. This family contains several conserved
motifs.
Length = 230
Score = 30.7 bits (69), Expect = 0.42
Identities = 17/39 (43%), Positives = 20/39 (51%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQRTMSEQCKIRSTIV 228
Q QQ QQQ Q+QQ Q QQQQQ+ S +V
Sbjct: 6 QYQQHQQQLVLMQKQQLAQLQQQQQQQNSSAATAPQDLV 44
Score = 30.0 bits (67), Expect = 0.80
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 10 QQQQQQQQQQQQQQQQQQQQQQQHRQQQ 37
+Q QQ QQQ Q+QQ Q QQ +QQQ
Sbjct: 5 EQYQQHQQQLVLMQKQQLAQLQQQQQQQ 32
Score = 30.0 bits (67), Expect = 0.85
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 73 QQQQQQQQQQQQQQQQQQQQQQQHRHRQQQKQH 105
QQ QQQ Q+QQ Q QQQQQ ++
Sbjct: 8 QQHQQQLVLMQKQQLAQLQQQQQQQNSSAATAP 40
Score = 30.0 bits (67), Expect = 0.86
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 10 QQQQQQ--QQQQQQQQQQQQQQQQQHRQQQKQH 40
QQ QQQ Q+QQ Q QQQQQQQ+
Sbjct: 8 QQHQQQLVLMQKQQLAQLQQQQQQQNSSAATAP 40
Score = 29.6 bits (66), Expect = 1.1
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 188 FLQQQQQQQQQQQQQQQQQQQQQQQQQRTMSE 219
+ Q QQQ Q+QQ Q QQQQQQQ + +
Sbjct: 7 YQQHQQQLVLMQKQQLAQLQQQQQQQNSSAAT 38
Score = 28.0 bits (62), Expect = 3.9
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 72 LQQQQQQQQQQQQQQQQQQQQQQQHRHRQQQ 102
+Q QQ QQQ Q+QQ Q + +QQQ
Sbjct: 2 FTAEQYQQHQQQLVLMQKQQLAQLQQQQQQQ 32
Score = 27.3 bits (60), Expect = 7.0
Identities = 16/38 (42%), Positives = 20/38 (52%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQRTMSEQCKIRSTI 227
QQQ Q+QQ Q QQQQQQQ + Q + T+
Sbjct: 11 QQQLVLMQKQQLAQLQQQQQQQNSSAATAPQDLVSKTL 48
Score = 27.3 bits (60), Expect = 7.5
Identities = 16/40 (40%), Positives = 20/40 (50%)
Query: 13 QQQQQQQQQQQQQQQQQQQQHRQQQKQHIKLDTGTEHDCV 52
+Q QQ QQQ Q+QQ Q +QQQ+Q D V
Sbjct: 5 EQYQQHQQQLVLMQKQQLAQLQQQQQQQNSSAATAPQDLV 44
Score = 26.9 bits (59), Expect = 7.7
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 70 FILQQQQQQQQQQQQQQQQQQQQQQQHRHRQ 100
F +Q QQ QQQ Q+QQ Q QQ + +Q
Sbjct: 2 FTAEQYQQHQQQLVLMQKQQLAQLQQQQQQQ 32
Score = 26.9 bits (59), Expect = 8.2
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 8 LLQQQQQQQQQQQQQQQQQQQQQQQHRQ 35
L+ Q+QQ Q QQQQQQQ Q
Sbjct: 14 LVLMQKQQLAQLQQQQQQQNSSAATAPQ 41
Score = 26.9 bits (59), Expect = 9.7
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 189 LQQQQQQQQQQQQQQQQQQQQQQQQQRTMS 218
L Q+QQ Q QQQQQQQ Q +S
Sbjct: 16 LMQKQQLAQLQQQQQQQNSSAATAPQDLVS 45
>gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex
non-fungal. The approx. 70 residue Med15 domain of the
ARC-Mediator co-activator is a three-helix bundle with
marked similarity to the KIX domain. The sterol
regulatory element binding protein (SREBP) family of
transcription activators use the ARC105 subunit to
activate target genes in the regulation of cholesterol
and fatty acid homeostasis. In addition, Med15 is a
critical transducer of gene activation signals that
control early metazoan development.
Length = 768
Score = 31.1 bits (70), Expect = 0.49
Identities = 51/221 (23%), Positives = 72/221 (32%), Gaps = 1/221 (0%)
Query: 1 MTAELSSLLQQQQQQQQQQQQQQQQQQQQQQQHRQQQKQHIKLDTGTEHDCVQDDNGNGR 60
+ Q Q QQ Q QQ Q Q Q Q +Q G G
Sbjct: 147 AGGMMQQSSGQPQSQQPNQMGPQQGQAQGQAGGMNQGQQGPVGQQQPPQMGQPGMPGGGG 206
Query: 61 GFDSHSGANFILQQQQQQQQQQQQQQQQQQQQQQQHRHRQQQKQHIKLDKGTEHVFKTTM 120
QQQQ Q QQQ Q QQQQQ QQ Q Q + +G + M
Sbjct: 207 QGQMQQQGQPGGQQQQNPQMQQQLQNQQQQQMDQQQGPADAQAQMGQQQQGQGGMQPQQM 266
Query: 121 VMEIGKQAEHNIIVLVEFAIA-LVTILDQINRESFQRFRLRMAILDLNVAILGENFKLLL 179
+ + + L + +Q+ + + G +
Sbjct: 267 QGGQMQVPMQQQPPQQQPQQSQLGMLPNQMQQMPGGGQGGPGQPMGPPPQRPGAVPQGGQ 326
Query: 180 YLPTYLIFFLQQQQQQQQQQQQQQQQQQQQQQQQQRTMSEQ 220
+ ++ QQQ +Q + + + QQQ QQQQQQQ
Sbjct: 327 AVQQGVMSAGQQQLKQMKLRNMRGQQQTQQQQQQQGGNHPA 367
Score = 31.1 bits (70), Expect = 0.56
Identities = 46/211 (21%), Positives = 62/211 (29%), Gaps = 3/211 (1%)
Query: 10 QQQQQQQQQQQQQQQQQQQQQQQHRQQQKQHIKLDTGTEHDCVQDDNGNGRGFDSHSGAN 69
Q QQ Q Q Q Q QQ QQ+ G Q N
Sbjct: 164 NQMGPQQGQAQGQAGGMNQGQQGPVGQQQPPQMGQPGMPGGGGQGQMQQQGQPGGQQQQN 223
Query: 70 FILQQQQQQQQQQQQQQQQQQQQQQQHRHRQQQKQHIKLDKGTEHVFKTTMVMEIGKQAE 129
+QQQ Q QQQQQ QQQ Q +QQQ Q + + + + Q +
Sbjct: 224 PQMQQQLQNQQQQQMDQQQGPADAQAQMGQQQQGQGGMQPQQMQGGQMQVPMQQQPPQQQ 283
Query: 130 HNIIVLVEFAIALVTILDQINRESFQRFRLRMAILDLNVAILGENFKLLLYL---PTYLI 186
L + + Q + ++ +
Sbjct: 284 PQQSQLGMLPNQMQQMPGGGQGGPGQPMGPPPQRPGAVPQGGQAVQQGVMSAGQQQLKQM 343
Query: 187 FFLQQQQQQQQQQQQQQQQQQQQQQQQQRTM 217
+ QQQ QQQQQQQ QQ+
Sbjct: 344 KLRNMRGQQQTQQQQQQQGGNHPAAHQQQMN 374
Score = 29.6 bits (66), Expect = 1.5
Identities = 23/95 (24%), Positives = 30/95 (31%)
Query: 10 QQQQQQQQQQQQQQQQQQQQQQQHRQQQKQHIKLDTGTEHDCVQDDNGNGRGFDSHSGAN 69
QQQ QQ Q Q QQ + +
Sbjct: 281 QQQPQQSQLGMLPNQMQQMPGGGQGGPGQPMGPPPQRPGAVPQGGQAVQQGVMSAGQQQL 340
Query: 70 FILQQQQQQQQQQQQQQQQQQQQQQQHRHRQQQKQ 104
++ + + QQQ QQQQQQQ H+QQ Q
Sbjct: 341 KQMKLRNMRGQQQTQQQQQQQGGNHPAAHQQQMNQ 375
Score = 29.6 bits (66), Expect = 1.6
Identities = 44/211 (20%), Positives = 64/211 (30%)
Query: 10 QQQQQQQQQQQQQQQQQQQQQQQHRQQQKQHIKLDTGTEHDCVQDDNGNGRGFDSHSGAN 69
Q Q Q Q Q QQ QQQ Q + + G Q G + +
Sbjct: 170 QGQAQGQAGGMNQGQQGPVGQQQPPQMGQPGMPGGGGQGQMQQQGQPGGQQQQNPQMQQQ 229
Query: 70 FILQQQQQQQQQQQQQQQQQQQQQQQHRHRQQQKQHIKLDKGTEHVFKTTMVMEIGKQAE 129
QQQQQ QQQ Q Q QQQ Q Q ++ + + + + +
Sbjct: 230 LQNQQQQQMDQQQGPADAQAQMGQQQQGQGGMQPQQMQGGQMQVPMQQQPPQQQPQQSQL 289
Query: 130 HNIIVLVEFAIALVTILDQINRESFQRFRLRMAILDLNVAILGENFKLLLYLPTYLIFFL 189
+ ++ + + V + L
Sbjct: 290 GMLPNQMQQMPGGGQGGPGQPMGPPPQRPGAVPQGGQAVQQGVMSAGQQQLKQMKLRNMR 349
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQRTMSEQ 220
QQQ QQQQQQQ QQQ + + +
Sbjct: 350 GQQQTQQQQQQQGGNHPAAHQQQMNQQVGQG 380
Score = 28.8 bits (64), Expect = 3.0
Identities = 27/105 (25%), Positives = 37/105 (35%)
Query: 6 SSLLQQQQQQQQQQQQQQQQQQQQQQQHRQQQKQHIKLDTGTEHDCVQDDNGNGRGFDSH 65
S + Q Q QQ Q Q QQ Q Q + G+
Sbjct: 136 SRVGTMQPGGQAGGMMQQSSGQPQSQQPNQMGPQQGQAQGQAGGMNQGQQGPVGQQQPPQ 195
Query: 66 SGANFILQQQQQQQQQQQQQQQQQQQQQQQHRHRQQQKQHIKLDK 110
G + Q Q QQQ Q QQQQ Q + + Q +Q ++D+
Sbjct: 196 MGQPGMPGGGGQGQMQQQGQPGGQQQQNPQMQQQLQNQQQQQMDQ 240
Score = 27.3 bits (60), Expect = 8.1
Identities = 48/208 (23%), Positives = 61/208 (29%), Gaps = 31/208 (14%)
Query: 10 QQQQQQQQQQQQQQQQQQQQQQQHRQQQKQHIKLDTGTEHDCVQDDNGNGRGFDSHSGAN 69
Q Q QQQ Q QQQQ Q QQQ + QQ+Q + G Q
Sbjct: 207 QGQMQQQGQPGGQQQQNPQMQQQLQNQQQQQMDQQQGPADAQAQMGQQQQGQGGMQPQQM 266
Query: 70 FILQQQQQQQQQQQQQQQQQQQQQQQHRHRQQQKQHIKLDKGTEHVFKTTMVMEIGKQAE 129
Q Q QQQ QQQ QQ Q QQ + G + + +
Sbjct: 267 QGGQMQVPMQQQPPQQQPQQSQLGMLPNQMQQMPGGGQGGPGQPMGPPPQRPGAVPQGGQ 326
Query: 130 HNIIVLVEFAIALVTILDQINRESFQRFRLRMAILDLNVAILGENFKLLLYLPTYLIFFL 189
++ + + N Q+ +
Sbjct: 327 AVQQGVMSAGQQQLKQMKLRNMRGQQQTQ------------------------------- 355
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQRTM 217
QQQQQQ QQQ QQ Q M
Sbjct: 356 QQQQQQGGNHPAAHQQQMNQQVGQGGQM 383
>gnl|CDD|234273 TIGR03593, yidC_nterm, membrane protein insertase, YidC/Oxa1
family, N-terminal domain. Essentially all bacteria
have a member of the YidC family, whose C-terminal
domain is modeled by TIGR03592. The two copies are found
in endospore-forming bacteria such as Bacillus subtilis
appear redundant during vegetative growth, although the
member designated spoIIIJ (stage III sporulation protein
J) has a distinct role in spore formation. YidC, its
mitochondrial homolog Oxa1, and its chloroplast homolog
direct insertion into the bacterial/organellar inner (or
only) membrane. This model describes an N-terminal
sequence region, including a large periplasmic domain
lacking in YidC members from Gram-positive species. The
multifunctional YidC protein acts both with and
independently of the Sec system [Protein fate, Protein
and peptide secretion and trafficking].
Length = 366
Score = 30.8 bits (70), Expect = 0.52
Identities = 7/30 (23%), Positives = 9/30 (30%)
Query: 185 LIFFLQQQQQQQQQQQQQQQQQQQQQQQQQ 214
+IF L Q Q + Q Q
Sbjct: 13 VIFLLWQAWQSDPGPPPPKPPAAAQTASAQ 42
Score = 28.5 bits (64), Expect = 3.4
Identities = 2/31 (6%), Positives = 5/31 (16%)
Query: 184 YLIFFLQQQQQQQQQQQQQQQQQQQQQQQQQ 214
+ + + Q Q
Sbjct: 18 WQAWQSDPGPPPPKPPAAAQTASAQSATAAA 48
>gnl|CDD|224486 COG1570, XseA, Exonuclease VII, large subunit [DNA replication,
recombination, and repair].
Length = 440
Score = 31.1 bits (71), Expect = 0.53
Identities = 18/106 (16%), Positives = 41/106 (38%), Gaps = 6/106 (5%)
Query: 3 AELSSLLQQQQQQQQQQQQQ------QQQQQQQQQQHRQQQKQHIKLDTGTEHDCVQDDN 56
AEL + QQ Q Q+ ++ Q++Q+ ++ Q
Sbjct: 256 AELVVPDSAELLQQLDQLQRRLHRALRRLLDQKKQRLEHLARRLQFRSPERLLSEQQQRL 315
Query: 57 GNGRGFDSHSGANFILQQQQQQQQQQQQQQQQQQQQQQQHRHRQQQ 102
+ N + ++Q+ ++ Q+ Q Q+QQQ+ + +++
Sbjct: 316 DELAIRLRRALENQLALKKQRLERLTQRLNPQIQRQQQRLQQLERR 361
Score = 27.2 bits (61), Expect = 7.7
Identities = 11/39 (28%), Positives = 22/39 (56%)
Query: 1 MTAELSSLLQQQQQQQQQQQQQQQQQQQQQQQHRQQQKQ 39
+ L + L ++Q+ ++ Q+ Q Q+QQQ QQ ++
Sbjct: 322 LRRALENQLALKKQRLERLTQRLNPQIQRQQQRLQQLER 360
>gnl|CDD|111097 pfam02166, Androgen_recep, Androgen receptor.
Length = 423
Score = 30.9 bits (69), Expect = 0.55
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 6 SSLLQQQQQQQQQQQQQQQQQQQQQQQHRQQQKQHIKLD 44
+ L QQQ+ +QQQQQQ + Q H + ++ LD
Sbjct: 47 ACLQQQQETSPRQQQQQQHGEDGSPQAHIRGPTGYLALD 85
Score = 29.4 bits (65), Expect = 1.6
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 198 QQQQQQQQQQQQQQQQQRTMSEQCKIRST 226
QQQQ+ +QQQQQQ S Q IR
Sbjct: 50 QQQQETSPRQQQQQQHGEDGSPQAHIRGP 78
Score = 29.4 bits (65), Expect = 1.8
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 74 QQQQQQQQQQQQQQQQQQQQQQHRHRQQQKQHIKLDK 110
QQQQ+ +QQQQQQ + H + ++ LD+
Sbjct: 50 QQQQETSPRQQQQQQHGEDGSPQAHIRGPTGYLALDE 86
Score = 29.4 bits (65), Expect = 1.8
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 189 LQQQQQQQQQQQQQQQQQQQQQQQQQR 215
LQQQQ+ +QQQQQQ + Q
Sbjct: 49 LQQQQETSPRQQQQQQHGEDGSPQAHI 75
Score = 28.6 bits (63), Expect = 3.2
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 16 QQQQQQQQQQQQQQQQQHRQQQKQHIKLDTG 46
QQQQ+ +QQQQQQ + HI+ TG
Sbjct: 50 QQQQETSPRQQQQQQHGEDGSPQAHIRGPTG 80
>gnl|CDD|215106 PLN00212, PLN00212, glutelin; Provisional.
Length = 493
Score = 30.9 bits (70), Expect = 0.62
Identities = 17/28 (60%), Positives = 20/28 (71%)
Query: 189 LQQQQQQQQQQQQQQQQQQQQQQQQQRT 216
L QQQ+Q QQQQQ+ QQ Q QQ QQ +
Sbjct: 270 LTQQQEQAQQQQQRLYQQVQYQQSQQTS 297
Score = 30.2 bits (68), Expect = 0.87
Identities = 17/33 (51%), Positives = 22/33 (66%)
Query: 7 SLLQQQQQQQQQQQQQQQQQQQQQQQHRQQQKQ 39
LLQ QQQ+Q QQQQQ+ QQ Q++Q Q+
Sbjct: 264 QLLQPTLTQQQEQAQQQQQRLYQQVQYQQSQQT 296
Score = 29.8 bits (67), Expect = 1.2
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 191 QQQQQQQQQQQQQQQQQQQQQQQQRTMSEQ 220
QQQ+Q QQQQQ+ QQ Q QQ Q+T
Sbjct: 271 TQQQEQAQQQQQRLYQQVQYQQSQQTSGRW 300
Score = 28.6 bits (64), Expect = 2.7
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 71 ILQQQQQQQQQQQQQQQQQQQQQQQHRHRQQQ 102
+LQ QQQ+Q QQQQQ+ QQ Q++ QQ
Sbjct: 265 LLQPTLTQQQEQAQQQQQRLYQQVQYQQSQQT 296
Score = 28.6 bits (64), Expect = 2.9
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 7 SLLQQQQQQQQQQQQQQQQQQQQQQQHRQQQ 37
+L QQQ+Q QQQQQ+ QQ Q QQ Q +
Sbjct: 269 TLTQQQEQAQQQQQRLYQQVQYQQSQQTSGR 299
Score = 28.2 bits (63), Expect = 3.6
Identities = 16/35 (45%), Positives = 20/35 (57%)
Query: 5 LSSLLQQQQQQQQQQQQQQQQQQQQQQQHRQQQKQ 39
L L QQQ+Q QQQQQ+ QQ Q QQ + +
Sbjct: 266 LQPTLTQQQEQAQQQQQRLYQQVQYQQSQQTSGRW 300
Score = 28.2 bits (63), Expect = 4.0
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 76 QQQQQQQQQQQQQQQQQQQQHRHRQQQKQHIKLDK 110
QQQ+Q QQQQQ+ QQ Q + +Q + LD+
Sbjct: 271 TQQQEQAQQQQQRLYQQVQYQQSQQTSGRWNGLDE 305
Score = 27.9 bits (62), Expect = 4.7
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 73 QQQQQQQQQQQQQQQQQQQQQQQHRHRQQ 101
QQQ+Q QQQQQ+ QQ Q QQ Q +
Sbjct: 272 QQQEQAQQQQQRLYQQVQYQQSQQTSGRW 300
Score = 27.9 bits (62), Expect = 6.0
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 72 LQQQQQQQQQQQQQQQQQQQQQQQHRHRQQQ 102
L QQQ+Q QQQQQ+ QQ Q QQ + +
Sbjct: 270 LTQQQEQAQQQQQRLYQQVQYQQSQQTSGRW 300
Score = 27.5 bits (61), Expect = 6.2
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 193 QQQQQQQQQQQQQQQQQQQQQQRTMSEQC 221
QQQ+Q QQQQQ+ QQ Q QQ +
Sbjct: 271 TQQQEQAQQQQQRLYQQVQYQQSQQTSGR 299
Score = 27.5 bits (61), Expect = 7.1
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 192 QQQQQQQQQQQQQQQQQQQQQQQRTMSEQC 221
QQQ+Q QQQQQ+ QQ Q QQ + S +
Sbjct: 271 TQQQEQAQQQQQRLYQQVQYQQSQQTSGRW 300
>gnl|CDD|240402 PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Provisional.
Length = 651
Score = 30.4 bits (69), Expect = 0.76
Identities = 3/34 (8%), Positives = 25/34 (73%)
Query: 71 ILQQQQQQQQQQQQQQQQQQQQQQQHRHRQQQKQ 104
+ +++++++ ++Q++ ++ ++Q++ + ++ +K
Sbjct: 553 LQREKEEKEALKEQKRLRKLKKQEEKKKKELEKL 586
Score = 29.2 bits (66), Expect = 2.1
Identities = 3/32 (9%), Positives = 25/32 (78%)
Query: 8 LLQQQQQQQQQQQQQQQQQQQQQQQHRQQQKQ 39
L +++++++ ++Q++ ++ ++Q++ ++++ +
Sbjct: 553 LQREKEEKEALKEQKRLRKLKKQEEKKKKELE 584
Score = 28.8 bits (65), Expect = 2.8
Identities = 5/36 (13%), Positives = 24/36 (66%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQRTMSEQCKIRS 225
Q+++++++ ++Q++ ++ ++Q+++ E K+
Sbjct: 553 LQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEK 588
Score = 28.5 bits (64), Expect = 3.3
Identities = 9/38 (23%), Positives = 23/38 (60%)
Query: 76 QQQQQQQQQQQQQQQQQQQQHRHRQQQKQHIKLDKGTE 113
+++ Q+++++++ ++Q R R+ +KQ K K E
Sbjct: 547 LDDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELE 584
Score = 28.1 bits (63), Expect = 4.5
Identities = 2/32 (6%), Positives = 24/32 (75%)
Query: 8 LLQQQQQQQQQQQQQQQQQQQQQQQHRQQQKQ 39
++++++ ++Q++ ++ ++Q+++ +++ ++
Sbjct: 554 QREKEEKEALKEQKRLRKLKKQEEKKKKELEK 585
Score = 28.1 bits (63), Expect = 5.0
Identities = 4/28 (14%), Positives = 23/28 (82%)
Query: 189 LQQQQQQQQQQQQQQQQQQQQQQQQQRT 216
LQ+++++++ ++Q++ ++ ++Q++++
Sbjct: 553 LQREKEEKEALKEQKRLRKLKKQEEKKK 580
Score = 27.7 bits (62), Expect = 5.9
Identities = 3/29 (10%), Positives = 22/29 (75%)
Query: 11 QQQQQQQQQQQQQQQQQQQQQQHRQQQKQ 39
++++ ++Q++ ++ ++Q++++ ++ +K
Sbjct: 558 EEKEALKEQKRLRKLKKQEEKKKKELEKL 586
>gnl|CDD|221266 pfam11851, DUF3371, Domain of unknown function (DUF3371). This
domain is functionally uncharacterized. This domain is
found in eukaryotes. This presumed domain is typically
between 125 to 142 amino acids in length.
Length = 131
Score = 29.3 bits (66), Expect = 0.79
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 2 TAELSSLLQQQQQQQQQQQQQQQQQQQQQQQH 33
TA+L + + +Q+ Q + Q Q Q
Sbjct: 18 TADLMARVIKQEPQLEDNQCPQDLYPHSSQPD 49
Score = 26.2 bits (58), Expect = 9.5
Identities = 5/28 (17%), Positives = 9/28 (32%)
Query: 189 LQQQQQQQQQQQQQQQQQQQQQQQQQRT 216
++Q+ Q + Q Q Q
Sbjct: 26 IKQEPQLEDNQCPQDLYPHSSQPDLPPP 53
>gnl|CDD|201086 pfam00211, Guanylate_cyc, Adenylate and Guanylate cyclase catalytic
domain.
Length = 184
Score = 29.9 bits (68), Expect = 0.85
Identities = 9/35 (25%), Positives = 18/35 (51%)
Query: 129 EHNIIVLVEFAIALVTILDQINRESFQRFRLRMAI 163
+ L E A+ ++ + +N SF+ R+R+ I
Sbjct: 72 PAHAQTLAEMALDMLEAIKSVNIHSFEGLRVRVGI 106
>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit.
Transcription initiation factor IIA (TFIIA) is a
heterotrimer, the three subunits being known as alpha,
beta, and gamma, in order of molecular weight. The N and
C-terminal domains of the gamma subunit are represented
in pfam02268 and pfam02751, respectively. This family
represents the precursor that yields both the alpha and
beta subunits. The TFIIA heterotrimer is an essential
general transcription initiation factor for the
expression of genes transcribed by RNA polymerase II.
Together with TFIID, TFIIA binds to the promoter region;
this is the first step in the formation of a
pre-initiation complex (PIC). Binding of the rest of the
transcription machinery follows this step. After
initiation, the PIC does not completely dissociate from
the promoter. Some components, including TFIIA, remain
attached and re-initiate a subsequent round of
transcription.
Length = 332
Score = 30.1 bits (68), Expect = 1.00
Identities = 15/98 (15%), Positives = 31/98 (31%), Gaps = 1/98 (1%)
Query: 12 QQQQQQQQQQQQQQQQQQQQQHRQQQKQHIKLDTGTEHDCVQDDNGNGRGFDSHSGANFI 71
QQ QQ+ Q QQQ ++ + ++ E Q +G G
Sbjct: 147 QQLQQRYGAPASGQLPSQQQSAQKNDESQLQQQPNGETP-PQQTDGAGDDESEALVRLRE 205
Query: 72 LQQQQQQQQQQQQQQQQQQQQQQQHRHRQQQKQHIKLD 109
+Q+ + + + +Q + + K+
Sbjct: 206 ADGTLEQRIKGAEGGGAMKVLKQPKKQAKSSKRRTIAQ 243
Score = 27.4 bits (61), Expect = 6.9
Identities = 19/98 (19%), Positives = 23/98 (23%), Gaps = 12/98 (12%)
Query: 10 QQQQQQQQQQQQQQQQQQQQQQQHRQQQKQHI------------KLDTGTEHDCVQDDNG 57
Q Q Q Q Q QQQ L G +Q + G
Sbjct: 58 PVAQLPQPLPQPPPTQALQALPAGDQQQHNTPTGSPAANPPATFALPAGPAGPTIQTEPG 117
Query: 58 NGRGFDSHSGANFILQQQQQQQQQQQQQQQQQQQQQQQ 95
Q QQ+ QQ QQ+
Sbjct: 118 QLYPVQVPVMVTQNPANSPLDQPAQQRALQQLQQRYGA 155
>gnl|CDD|235310 PRK04750, ubiB, putative ubiquinone biosynthesis protein UbiB;
Reviewed.
Length = 537
Score = 29.9 bits (68), Expect = 1.1
Identities = 8/40 (20%), Positives = 17/40 (42%)
Query: 176 KLLLYLPTYLIFFLQQQQQQQQQQQQQQQQQQQQQQQQQR 215
+ L LP + L+Q + Q +Q + + +Q +
Sbjct: 456 EKLPELPRLVHDSLRQGKLLQHSVDLLAEQLRTNRLRQGQ 495
Score = 29.5 bits (67), Expect = 1.5
Identities = 9/36 (25%), Positives = 16/36 (44%)
Query: 4 ELSSLLQQQQQQQQQQQQQQQQQQQQQQQHRQQQKQ 39
EL L+ +Q + Q +Q + +R +Q Q
Sbjct: 460 ELPRLVHDSLRQGKLLQHSVDLLAEQLRTNRLRQGQ 495
Score = 27.6 bits (62), Expect = 6.3
Identities = 6/30 (20%), Positives = 13/30 (43%)
Query: 7 SLLQQQQQQQQQQQQQQQQQQQQQQQHRQQ 36
SL Q + Q +Q + + +Q + +
Sbjct: 468 SLRQGKLLQHSVDLLAEQLRTNRLRQGQSR 497
Score = 27.6 bits (62), Expect = 6.5
Identities = 5/29 (17%), Positives = 12/29 (41%)
Query: 9 LQQQQQQQQQQQQQQQQQQQQQQQHRQQQ 37
L+Q + Q +Q + + + Q +
Sbjct: 469 LRQGKLLQHSVDLLAEQLRTNRLRQGQSR 497
>gnl|CDD|220815 pfam10577, UPF0560, Uncharacterized protein family UPF0560. This
family of proteins has no known function.
Length = 805
Score = 30.2 bits (68), Expect = 1.1
Identities = 10/39 (25%), Positives = 14/39 (35%)
Query: 2 TAELSSLLQQQQQQQQQQQQQQQQQQQQQQQHRQQQKQH 40
A+ S + Q + Q Q Q+ QQ Q Q
Sbjct: 535 PADQQSEIGTLQAELSHSHAQPQGQRLSAQQISGQHSQD 573
Score = 29.1 bits (65), Expect = 2.6
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 4 ELSSLLQQQQQQQQQQQQQQQQQQQQQQQHRQQQ 37
E+ +L + Q Q Q+ QQ QH Q
Sbjct: 541 EIGTLQAELSHSHAQPQGQRLSAQQISGQHSQDS 574
Score = 28.7 bits (64), Expect = 2.8
Identities = 9/34 (26%), Positives = 12/34 (35%)
Query: 2 TAELSSLLQQQQQQQQQQQQQQQQQQQQQQQHRQ 35
L + L Q Q Q+ QQ Q Q +
Sbjct: 542 IGTLQAELSHSHAQPQGQRLSAQQISGQHSQDSE 575
Score = 28.7 bits (64), Expect = 3.1
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 1 MTAELSSLLQQQQQQQQQQQQQQQQQQQQQQ 31
+ AELS Q Q Q+ QQ Q Q +
Sbjct: 545 LQAELSHSHAQPQGQRLSAQQISGQHSQDSE 575
Score = 27.9 bits (62), Expect = 5.6
Identities = 8/25 (32%), Positives = 9/25 (36%)
Query: 72 LQQQQQQQQQQQQQQQQQQQQQQQH 96
L Q Q Q+ QQ Q Q
Sbjct: 549 LSHSHAQPQGQRLSAQQISGQHSQD 573
Score = 27.9 bits (62), Expect = 5.6
Identities = 9/30 (30%), Positives = 11/30 (36%)
Query: 191 QQQQQQQQQQQQQQQQQQQQQQQQRTMSEQ 220
Q Q Q+ QQ Q Q + S Q
Sbjct: 553 HAQPQGQRLSAQQISGQHSQDSEGEGWSSQ 582
Score = 27.9 bits (62), Expect = 5.8
Identities = 8/26 (30%), Positives = 10/26 (38%)
Query: 189 LQQQQQQQQQQQQQQQQQQQQQQQQQ 214
LQ + Q Q Q+ QQ Q
Sbjct: 545 LQAELSHSHAQPQGQRLSAQQISGQH 570
Score = 27.9 bits (62), Expect = 5.9
Identities = 12/43 (27%), Positives = 16/43 (37%), Gaps = 6/43 (13%)
Query: 53 QDDNGNGRGFDSHSGANFILQQQQQQQQQQQQQQQQQQQQQQQ 95
Q + G + SHS Q Q Q+ QQ Q Q +
Sbjct: 539 QSEIGTLQAELSHS------HAQPQGQRLSAQQISGQHSQDSE 575
Score = 27.5 bits (61), Expect = 6.9
Identities = 8/27 (29%), Positives = 9/27 (33%)
Query: 188 FLQQQQQQQQQQQQQQQQQQQQQQQQQ 214
L Q Q Q+ QQ Q Q
Sbjct: 548 ELSHSHAQPQGQRLSAQQISGQHSQDS 574
Score = 27.5 bits (61), Expect = 8.1
Identities = 7/30 (23%), Positives = 10/30 (33%)
Query: 75 QQQQQQQQQQQQQQQQQQQQQHRHRQQQKQ 104
Q Q Q+ QQ QH + +
Sbjct: 549 LSHSHAQPQGQRLSAQQISGQHSQDSEGEG 578
Score = 27.1 bits (60), Expect = 8.7
Identities = 7/26 (26%), Positives = 9/26 (34%)
Query: 10 QQQQQQQQQQQQQQQQQQQQQQQHRQ 35
Q Q Q+ QQ Q Q +
Sbjct: 553 HAQPQGQRLSAQQISGQHSQDSEGEG 578
>gnl|CDD|215544 PLN03029, PLN03029, type-a response regulator protein; Provisional.
Length = 222
Score = 29.2 bits (65), Expect = 1.4
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 4 ELSSLLQQQQQQQQQQQQQQQQQQQQQQQHRQQQKQHIK 42
E S + ++Q+Q QQ Q Q Q QQQ QQ +++ ++
Sbjct: 165 EESEIQSEKQEQPSQQPQSQPQPQQQPQQPNNNKRKAME 203
Score = 28.1 bits (62), Expect = 3.2
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 189 LQQQQQQQQQQQQQQQQQQQQQQQQ 213
+Q ++Q+Q QQ Q Q Q QQQ QQ
Sbjct: 169 IQSEKQEQPSQQPQSQPQPQQQPQQ 193
Score = 28.1 bits (62), Expect = 3.5
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 191 QQQQQQQQQQQQQQQQQQQQQQQQ 214
Q ++Q+Q QQ Q Q Q QQQ QQ
Sbjct: 170 QSEKQEQPSQQPQSQPQPQQQPQQ 193
Score = 28.1 bits (62), Expect = 4.0
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 72 LQQQQQQQQQQQQQQQQQQQQQQQHRHRQQQK 103
+Q ++Q+Q QQ Q Q Q QQQ Q + ++K
Sbjct: 169 IQSEKQEQPSQQPQSQPQPQQQPQQPNNNKRK 200
Score = 27.7 bits (61), Expect = 4.6
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 73 QQQQQQQQQQQQQQQQQQQQQQQHRHRQQQKQHIKLDK 110
+Q+Q QQ Q Q Q QQQ QQ + R+ ++ + D+
Sbjct: 173 KQEQPSQQPQSQPQPQQQPQQPNNNKRKAMEEGLSPDR 210
Score = 27.3 bits (60), Expect = 5.7
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 189 LQQQQQQQQQQQQQQQQQQQQQQQQQRTMSEQ 220
Q+Q QQ Q Q Q QQQ QQ +R E+
Sbjct: 173 KQEQPSQQPQSQPQPQQQPQQPNNNKRKAMEE 204
Score = 27.3 bits (60), Expect = 6.8
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 3 AELSSLLQQQQQQQQQQQQQQQQQQQQQQQHRQQ 36
+E+ S Q+Q QQ Q Q Q QQQ QQ ++++
Sbjct: 167 SEIQSEKQEQPSQQPQSQPQPQQQPQQPNNNKRK 200
Score = 26.9 bits (59), Expect = 8.6
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 71 ILQQQQQQQQQQQQQQQQQQQQQQQHRHRQQQ 102
I ++Q+Q QQ Q Q Q QQQ QQ + +++
Sbjct: 169 IQSEKQEQPSQQPQSQPQPQQQPQQPNNNKRK 200
>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho;
Provisional.
Length = 672
Score = 29.9 bits (68), Expect = 1.4
Identities = 6/52 (11%), Positives = 23/52 (44%)
Query: 10 QQQQQQQQQQQQQQQQQQQQQQQHRQQQKQHIKLDTGTEHDCVQDDNGNGRG 61
+++++ ++ ++ +++++ R + + D G + G RG
Sbjct: 212 GDRREERGRRDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRGGRRG 263
Score = 27.6 bits (62), Expect = 6.7
Identities = 6/52 (11%), Positives = 23/52 (44%)
Query: 10 QQQQQQQQQQQQQQQQQQQQQQQHRQQQKQHIKLDTGTEHDCVQDDNGNGRG 61
++Q +++++ ++ ++ +++ R ++ + D DD G
Sbjct: 209 REQGDRREERGRRDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRGG 260
>gnl|CDD|106978 PHA00670, PHA00670, hypothetical protein.
Length = 540
Score = 29.8 bits (67), Expect = 1.4
Identities = 12/48 (25%), Positives = 18/48 (37%)
Query: 60 RGFDSHSGANFILQQQQQQQQQQQQQQQQQQQQQQQHRHRQQQKQHIK 107
G L ++Q Q ++Q+ QQQQ QQ + K
Sbjct: 480 DMLADMLGVPPTLIVPKEQVQSIRKQRAQQQQAAQQAAIAEAAANAAK 527
Score = 29.0 bits (65), Expect = 2.1
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 195 QQQQQQQQQQQQQQQQQQQQRTMSEQ 220
++Q Q ++Q+ QQQQ QQ ++E
Sbjct: 496 KEQVQSIRKQRAQQQQAAQQAAIAEA 521
Score = 27.5 bits (61), Expect = 6.4
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 11 QQQQQQQQQQQQQQQQQQQQQQHRQQQKQHIK 42
++Q Q ++Q+ QQQQ QQ + K
Sbjct: 496 KEQVQSIRKQRAQQQQAAQQAAIAEAAANAAK 527
Score = 27.1 bits (60), Expect = 8.9
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 7 SLLQQQQQQQQQQQQQQQQQQQQQQ 31
+L+ ++Q Q ++Q+ QQQQ QQ
Sbjct: 491 TLIVPKEQVQSIRKQRAQQQQAAQQ 515
>gnl|CDD|119430 cd05170, PIKKc_SMG1, Suppressor of morphogenetic effect on
genitalia-1 (SMG-1), catalytic domain; The SMG-1
catalytic domain subfamily is part of a larger
superfamily that includes the catalytic domains of other
kinases such as the typical serine/threonine/tyrosine
protein kinases (PKs), aminoglycoside
phosphotransferase, choline kinase, and RIO kinases.
SMG-1 is a member of the phosphoinositide
3-kinase-related protein kinase (PIKK) subfamily. PIKKs
have intrinsic serine/threonine kinase activity and are
distinguished from other PKs by their unique catalytic
domain, similar to that of lipid PI3K, and their large
molecular weight (240-470 kDa). In addition to its
catalytic domain, SMG-1 contains a FATC (FRAP, ATM and
TRRAP, C-terminal) domain at the C-terminus. SMG-1 plays
a critical role in the mRNA surveillance mechanism known
as non-sense mediated mRNA decay (NMD). NMD protects the
cells from the accumulation of aberrant mRNAs with
premature termination codons (PTCs) generated by genome
mutations and by errors during transcription and
splicing. SMG-1 phosphorylates Upf1, another central
component of NMD, at the C-terminus upon recognition of
PTCs. The phosphorylation/dephosphorylation cycle of
Upf1 is essential for promoting NMD.
Length = 307
Score = 29.3 bits (66), Expect = 1.7
Identities = 9/35 (25%), Positives = 17/35 (48%)
Query: 186 IFFLQQQQQQQQQQQQQQQQQQQQQQQQQRTMSEQ 220
+F L ++ QQ++ Q Q+ Q Q Q + +
Sbjct: 94 LFGLYKRWQQREAVLQAQKSQVGYQNPQIPGIVPR 128
Score = 28.9 bits (65), Expect = 2.3
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 182 PTYLIFFLQQQQQQQQQQQQQQQQQQQQQQQQ 213
P + ++ QQ++ Q Q+ Q Q Q
Sbjct: 93 PLFGLYKRWQQREAVLQAQKSQVGYQNPQIPG 124
Score = 28.6 bits (64), Expect = 3.2
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 73 QQQQQQQQQQQQQQQQQQQQQQQHRHR 99
QQ++ Q Q+ Q Q Q R
Sbjct: 102 QQREAVLQAQKSQVGYQNPQIPGIVPR 128
Score = 28.2 bits (63), Expect = 3.8
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 15 QQQQQQQQQQQQQQQQQQHRQQQ 37
QQ++ Q Q+ Q Q +
Sbjct: 102 QQREAVLQAQKSQVGYQNPQIPG 124
Score = 28.2 bits (63), Expect = 3.9
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 10 QQQQQQQQQQQQQQQQQQQQQQQ 32
QQ++ Q Q+ Q Q Q
Sbjct: 102 QQREAVLQAQKSQVGYQNPQIPG 124
Score = 27.8 bits (62), Expect = 5.2
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 12 QQQQQQQQQQQQQQQQQQQQQH 33
QQ++ Q Q+ Q Q Q
Sbjct: 102 QQREAVLQAQKSQVGYQNPQIP 123
>gnl|CDD|143636 cd07302, CHD, cyclase homology domain. Catalytic domains of the
mononucleotidyl cyclases (MNC's), also called cyclase
homology domains (CHDs), are part of the class III
nucleotidyl cyclases. This class includes eukaryotic and
prokaryotic adenylate cyclases (AC's) and guanylate
cyclases (GC's). They seem to share a common catalytic
mechanism in their requirement for two magnesium ions to
bind the polyphosphate moiety of the nucleotide.
Length = 177
Score = 28.7 bits (65), Expect = 1.9
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 136 VEFAIALVTILDQINRE--SFQRFRLRMAI 163
V A+ + L ++N E RLR+ I
Sbjct: 72 VRAALEMQEALAELNAEREGGPPLRLRIGI 101
>gnl|CDD|235822 PRK06531, yajC, preprotein translocase subunit YajC; Validated.
Length = 113
Score = 27.8 bits (62), Expect = 2.0
Identities = 11/19 (57%), Positives = 17/19 (89%)
Query: 185 LIFFLQQQQQQQQQQQQQQ 203
LIFF+Q+QQ++Q Q++Q Q
Sbjct: 15 LIFFMQRQQKKQAQERQNQ 33
>gnl|CDD|240400 PTZ00396, PTZ00396, Casein kinase II subunit beta; Provisional.
Length = 251
Score = 28.8 bits (65), Expect = 2.1
Identities = 8/47 (17%), Positives = 19/47 (40%)
Query: 61 GFDSHSGANFILQQQQQQQQQQQQQQQQQQQQQQQHRHRQQQKQHIK 107
GF H + + Q + + +Q ++ + + Q+Q+Q
Sbjct: 203 GFKVHKKKSSKEYKLQNGEFGKSAIEQFLKKSPKGNIELQEQEQQAI 249
Score = 26.9 bits (60), Expect = 9.3
Identities = 5/33 (15%), Positives = 13/33 (39%)
Query: 10 QQQQQQQQQQQQQQQQQQQQQQQHRQQQKQHIK 42
Q + + +Q ++ + Q+Q+Q
Sbjct: 217 LQNGEFGKSAIEQFLKKSPKGNIELQEQEQQAI 249
>gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein. Members of this
protein family have a signal peptide, a strongly
conserved SH3 domain, a variable region, and then a
C-terminal hydrophobic transmembrane alpha helix region.
Length = 198
Score = 28.4 bits (64), Expect = 2.2
Identities = 17/101 (16%), Positives = 48/101 (47%), Gaps = 5/101 (4%)
Query: 1 MTAELSSLLQQQQQQQQQQQQQQQQQQQQQQQHRQQQKQHIKLDTGTEHDCVQDDNGNGR 60
+ EL+ L ++ + Q+Q + QQ+ Q+ +Q+ + + +L ++ + N
Sbjct: 71 LQQELAELQEELAELQEQLAELQQENQELKQELSTLEAELERLQKELAR--IKQLSANAI 128
Query: 61 GFDSHSGANFILQQQQQQQQQQQQQQQQQQQQQQQHRHRQQ 101
D N L+++ + +Q+ + + + ++ Q++ R+
Sbjct: 129 ELDE---ENRELREELAELKQENEALEAENERLQENEQRRW 166
>gnl|CDD|151935 pfam11498, Activator_LAG-3, Transcriptional activator LAG-3. The
C.elegans Notch pathway, involved in the control of
growth, differentiation and patterning in animal
development, relies on either of the receptors GLP-1 or
LIN-12. Both these receptors promote signalling by the
recruitment of LAG-3 to target promoters, where it then
acts as a transcriptional activator. LAG-3 works as a
ternary complex together with the DNA binding protein,
LAG-1.
Length = 476
Score = 28.8 bits (63), Expect = 2.5
Identities = 36/96 (37%), Positives = 46/96 (47%)
Query: 10 QQQQQQQQQQQQQQQQQQQQQQQHRQQQKQHIKLDTGTEHDCVQDDNGNGRGFDSHSGAN 69
+ Q+ +QQ+QQQ Q QQQQQ QQ+Q + H Q NG G +
Sbjct: 340 MEMQRIEQQRQQQIMHQHQQQQQQEHQQQQMLLQQQQQMHQLQQHHQMNGGGQFATQAHQ 399
Query: 70 FILQQQQQQQQQQQQQQQQQQQQQQQHRHRQQQKQH 105
QQ Q + Q+Q Q QQQQ Q H+ QQQ Q
Sbjct: 400 HAAYLQQMQHMRLQEQIQHQQQQAQHHQQAQQQHQQ 435
>gnl|CDD|184256 PRK13700, PRK13700, conjugal transfer protein TraD; Provisional.
Length = 732
Score = 28.8 bits (64), Expect = 2.6
Identities = 29/105 (27%), Positives = 41/105 (39%), Gaps = 14/105 (13%)
Query: 10 QQQQQQQQQQQQQQQQQQQQQQQHRQQQKQHIKLDT---GTEHDCVQDDNGNGR-----G 61
Q QQ QQ QQ QQ QQ QQ +K ++ G E + G
Sbjct: 621 QPQQPQQPQQPQQPQQPQQPVSPVINDKKSDAGVNVPAGGIEQELKMKPEEEMEQQLPPG 680
Query: 62 FDSHSGANFILQQQQQQQQQQQQQQQQQQQQQQQ-----HRHRQQ 101
S SG + + QQ+ QQQ Q++++ HR R +
Sbjct: 681 I-SESGEVVDMAAYEAWQQENHPDIQQQMQRREEVNINVHRERGE 724
>gnl|CDD|236942 PRK11637, PRK11637, AmiB activator; Provisional.
Length = 428
Score = 28.5 bits (64), Expect = 2.8
Identities = 14/50 (28%), Positives = 29/50 (58%)
Query: 1 MTAELSSLLQQQQQQQQQQQQQQQQQQQQQQQHRQQQKQHIKLDTGTEHD 50
+ A+ + L ++Q QQ+ +QQ QQQ+ +Q +++K L++ + D
Sbjct: 182 LAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKD 231
Score = 27.7 bits (62), Expect = 6.2
Identities = 9/29 (31%), Positives = 18/29 (62%)
Query: 189 LQQQQQQQQQQQQQQQQQQQQQQQQQRTM 217
L Q+ + +++Q QQ+ +QQ QQ+ +
Sbjct: 182 LAAQKAELEEKQSQQKTLLYEQQAQQQKL 210
>gnl|CDD|215814 pfam00242, DNA_pol_viral_N, DNA polymerase (viral) N-terminal
domain.
Length = 379
Score = 28.6 bits (64), Expect = 2.9
Identities = 16/87 (18%), Positives = 26/87 (29%), Gaps = 11/87 (12%)
Query: 25 QQQQQQQQHRQQQKQHIKLDTGTEHDCVQDDNGNGRGFDSHSGANFILQQQQQQ------ 78
+Q+ Q QQ + G E Q R + + ++
Sbjct: 181 EQEYLLQHGGQQHSHLQR--HGDEPFGAQSSGILSRSENRRTRNLANNTSRKSDTSRSVG 238
Query: 79 ---QQQQQQQQQQQQQQQQQHRHRQQQ 102
Q Q Q+ + Q Q + H QQ
Sbjct: 239 PVRQSQIQRSRLGLQANQGKLAHGQQG 265
>gnl|CDD|129661 TIGR00570, cdk7, CDK-activating kinase assembly factor MAT1. All
proteins in this family for which functions are known
are cyclin dependent protein kinases that are components
of TFIIH, a complex that is involved in nucleotide
excision repair and transcription initiation. Also known
as MAT1 (menage a trois 1). This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 309
Score = 28.6 bits (64), Expect = 3.0
Identities = 9/39 (23%), Positives = 28/39 (71%)
Query: 3 AELSSLLQQQQQQQQQQQQQQQQQQQQQQQHRQQQKQHI 41
EL L+ ++++++Q++ Q+++++QQ ++++ KQ +
Sbjct: 145 EELEEALEFEKEEEEQRRLLLQKEEEEQQMNKRKNKQAL 183
>gnl|CDD|184118 PRK13531, PRK13531, regulatory ATPase RavA; Provisional.
Length = 498
Score = 28.4 bits (64), Expect = 3.9
Identities = 10/40 (25%), Positives = 18/40 (45%)
Query: 1 MTAELSSLLQQQQQQQQQQQQQQQQQQQQQQQHRQQQKQH 40
+ +L L+ + QQQ + Q++ Q +QQQ
Sbjct: 294 LQQQLEQLMTEHAWQQQGMLTRLGAIVQRRLQLQQQQSDK 333
>gnl|CDD|240274 PTZ00112, PTZ00112, origin recognition complex 1 protein;
Provisional.
Length = 1164
Score = 28.0 bits (62), Expect = 5.4
Identities = 15/110 (13%), Positives = 35/110 (31%), Gaps = 18/110 (16%)
Query: 44 DTGTEHDCVQDDNGNGRGFDSHSGANFILQQQQQQQQQQQQQQQQQQQQQQQHRH----- 98
++ + + G+ R + + + + Q + + + + + Q+ H
Sbjct: 324 NSNNDDTSSSNHLGSNRISNRNPSSPYKKQTTTKHTNNTKNNKYNKTKTTQKFNHPLRHH 383
Query: 99 -----------RQQQKQHIKLDKGTEHVFKTTMVMEIGKQAEHNIIVLVE 137
+QK +K K + E+ K + I LVE
Sbjct: 384 ATINKRSSMLPMSEQKGRGASEKSEYI--KEFTMEEVAKLTKDTTIKLVE 431
>gnl|CDD|169261 PRK08182, PRK08182, single-stranded DNA-binding protein;
Provisional.
Length = 148
Score = 27.0 bits (60), Expect = 5.6
Identities = 5/31 (16%), Positives = 12/31 (38%)
Query: 4 ELSSLLQQQQQQQQQQQQQQQQQQQQQQQHR 34
LS + + + + Q Q+ ++ R
Sbjct: 118 TLSPKPAATEPEAEPKPQAAQESTAPKEPKR 148
Score = 26.6 bits (59), Expect = 7.0
Identities = 3/25 (12%), Positives = 10/25 (40%)
Query: 73 QQQQQQQQQQQQQQQQQQQQQQQHR 97
+ + + + Q Q+ ++ R
Sbjct: 124 AATEPEAEPKPQAAQESTAPKEPKR 148
>gnl|CDD|236154 PRK08119, PRK08119, flagellar motor switch protein; Validated.
Length = 382
Score = 27.5 bits (62), Expect = 5.9
Identities = 8/32 (25%), Positives = 17/32 (53%)
Query: 11 QQQQQQQQQQQQQQQQQQQQQQHRQQQKQHIK 42
Q +Q+QQQ Q+Q+ ++ Q +++
Sbjct: 249 TAQAAPAPKQEQQQAPPQRQEPEKEAQPVNVQ 280
Score = 27.5 bits (62), Expect = 6.8
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 10 QQQQQQQQQQQQQQQQQQQQQQQHRQQQ 37
Q +Q+QQQ Q+Q+ + Q
Sbjct: 249 TAQAAPAPKQEQQQAPPQRQEPEKEAQP 276
Score = 27.1 bits (61), Expect = 9.5
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 75 QQQQQQQQQQQQQQQQQQQQQHRHRQQQ 102
Q +Q+QQQ Q+Q+ Q
Sbjct: 249 TAQAAPAPKQEQQQAPPQRQEPEKEAQP 276
>gnl|CDD|203138 pfam04977, DivIC, Septum formation initiator. DivIC from B.
subtilis is necessary for both vegetative and
sporulation septum formation. These proteins are mainly
composed of an amino terminal coiled-coil.
Length = 80
Score = 26.0 bits (58), Expect = 6.1
Identities = 9/48 (18%), Positives = 18/48 (37%)
Query: 177 LLLYLPTYLIFFLQQQQQQQQQQQQQQQQQQQQQQQQQRTMSEQCKIR 224
LLL LIF + Q Q+ Q + + + + +++
Sbjct: 1 LLLLFQYLLIFGVNGLSAYYQLNQEIAALQAELAKLKAENEELEAEVK 48
>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional.
Length = 333
Score = 27.3 bits (61), Expect = 6.5
Identities = 24/124 (19%), Positives = 33/124 (26%), Gaps = 20/124 (16%)
Query: 13 QQQQQQQQQQQQQQQQQQQQHRQQQKQHIKLDTGTEHDCVQDDNGNGRGFDSHSGANFIL 72
Q +Q QQ + Q QH + Q Q +
Sbjct: 97 ASAQPRQPVQQPPEAQVPPQHAPRPAQPAPQPVQQPAYQPQPE----------------- 139
Query: 73 QQQQQQQQQQQQQQQQQQQQQQQHRHRQQQKQHIKLDKGTEHVFKTTMVMEIGKQAEHNI 132
Q QQ Q Q Q + Q E V + VM+ K+ E
Sbjct: 140 QPLQQPVSPQVAPAPQPVHSAPQPAQQAFQPAEPVAAPQPEPVAEPAPVMDKPKRKE--- 196
Query: 133 IVLV 136
V+V
Sbjct: 197 AVIV 200
>gnl|CDD|220811 pfam10565, NMDAR2_C, N-methyl D-aspartate receptor 2B3 C-terminus.
This domain is found at the C-terminus of many
NMDA-receptor proteins, many of which also carry the
Ligated ion-channel family pfam00060 further upstream as
well as the ANF_receptor family pfam01094. This region
is predicted to be a large extra-cellular domain of the
NMDA receptor proteins, being highly hydrophilic, and is
thought to be integrally involved in the function of the
receptor. The region also carries a number of potential
N-glycosylation sites.
Length = 660
Score = 27.5 bits (61), Expect = 7.1
Identities = 10/59 (16%), Positives = 23/59 (38%), Gaps = 4/59 (6%)
Query: 72 LQQQQQQQQQQQQQQQQQQQQQQQHRHRQQQKQHIKLDKGTEHVFKTTMVMEIGKQAEH 130
LQ++ + Q Q RQ++K + L + +H + +++ K+
Sbjct: 434 LQEESHGEGDGGVTAFGTYWPQTQGLQRQRRKGGLVLSR--QHSYDN--FVDLQKEEAL 488
>gnl|CDD|220369 pfam09731, Mitofilin, Mitochondrial inner membrane protein.
Mitofilin controls mitochondrial cristae morphology.
Mitofilin is enriched in the narrow space between the
inner boundary and the outer membranes, where it forms a
homotypic interaction and assembles into a large
multimeric protein complex. The first 78 amino acids
contain a typical amino-terminal-cleavable mitochondrial
presequence rich in positive-charged and hydroxylated
residues and a membrane anchor domain. In addition, it
has three centrally located coiled coil domains.
Length = 493
Score = 27.3 bits (61), Expect = 7.7
Identities = 8/88 (9%), Positives = 38/88 (43%), Gaps = 5/88 (5%)
Query: 9 LQQQQQQQQQQQQQQQQQQQQQQQHRQQQKQHIKLDTGTEHDCVQDDNGNGRGFDSHSGA 68
L ++ + + +++++ ++ ++++ K +L E + F
Sbjct: 175 LSKKLAELKAEEEEELERALKEKREELLSKLEEELLARLESKEAALEKQLRLEF-----E 229
Query: 69 NFILQQQQQQQQQQQQQQQQQQQQQQQH 96
+ +++ +++ +Q+ ++Q + +Q
Sbjct: 230 REKEELRKKYEEKLRQELERQAEAHEQK 257
>gnl|CDD|235585 PRK05733, PRK05733, single-stranded DNA-binding protein;
Provisional.
Length = 172
Score = 26.8 bits (59), Expect = 7.8
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 53 QDDNGNGRGFDSHSGANFILQQQQQQQQQQQQQQQQQQQQQQQ 95
Q D+ G+G +++ + Q Q+ QQ QQQ + QQ Q
Sbjct: 116 QGDDQGGQGGGNYNQSAPRQQAQRPQQAAQQQSRPAPQQPAPQ 158
>gnl|CDD|225519 COG2972, COG2972, Predicted signal transduction protein with a
C-terminal ATPase domain [Signal transduction
mechanisms].
Length = 456
Score = 27.0 bits (60), Expect = 8.5
Identities = 5/36 (13%), Positives = 15/36 (41%)
Query: 69 NFILQQQQQQQQQQQQQQQQQQQQQQQHRHRQQQKQ 104
+++ + ++ +Q+Q + + R Q Q
Sbjct: 231 TINEMEERLEYLIEENYSLEQEQLEAELRALQSQIN 266
>gnl|CDD|236892 PRK11281, PRK11281, hypothetical protein; Provisional.
Length = 1113
Score = 27.2 bits (61), Expect = 8.5
Identities = 18/85 (21%), Positives = 34/85 (40%), Gaps = 12/85 (14%)
Query: 8 LLQQQQQQQQQQQQQQQQQQQQQQQHRQQQKQHIKLDTGTEHDCVQDDNGNGRGFDSHSG 67
LL + +Q+++ +Q +QQ Q + RQ Q + L + + + + S
Sbjct: 71 LLDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEETRET-------LSTLS- 122
Query: 68 ANFILQQQQQQQQQQQQQQQQQQQQ 92
L+Q + + Q Q Q Q
Sbjct: 123 ----LRQLESRLAQTLDQLQNAQND 143
>gnl|CDD|206093 pfam13922, PHD_3, PHD domain of transcriptional enhancer, Asx.
This is the DNA-binding domain on the additional sex
combs-like 1 proteins. The Asx protein acts as an
enhancer of trithorax and polycomb in displaying
bidirectional homoeotic phenotypes in Drosophila,
suggesting that it is required for maintenance of both
activation and silencing of Hox genes. Asx is required
for normal adult haematopoiesis and its function depends
on its cellular context.
Length = 64
Score = 25.2 bits (55), Expect = 9.7
Identities = 7/26 (26%), Positives = 8/26 (30%)
Query: 194 QQQQQQQQQQQQQQQQQQQQQRTMSE 219
QQ Q Q QQ + T
Sbjct: 1 QQAQNGSGHSQHLPQQNFSGENTAEA 26
>gnl|CDD|225686 COG3144, FliK, Flagellar hook-length control protein [Cell motility
and secretion].
Length = 417
Score = 27.1 bits (60), Expect = 9.8
Identities = 16/57 (28%), Positives = 22/57 (38%)
Query: 1 MTAELSSLLQQQQQQQQQQQQQQQQQQQQQQQHRQQQKQHIKLDTGTEHDCVQDDNG 57
+ ++ Q Q QQQQ QQ Q +R QQ+ LD V +G
Sbjct: 355 IQLGQVNVSVQSFQGQQQQLSNQQNSGQSTNGNRLQQEDDQALDAPNSLQEVSSGDG 411
>gnl|CDD|225638 COG3096, MukB, Uncharacterized protein involved in chromosome
partitioning [Cell division and chromosome partitioning].
Length = 1480
Score = 27.2 bits (60), Expect = 9.9
Identities = 23/91 (25%), Positives = 45/91 (49%), Gaps = 3/91 (3%)
Query: 5 LSSLLQQQQQQQQQQQQQQQQQQQQQQQHRQQQKQHIKLDTGTEHDCVQDDNGNGRGFDS 64
++S+LQ +Q +Q ++ Q QQ Q+Q RQQ ++ H D +
Sbjct: 925 IASVLQSDPEQFEQLKEDYAQAQQMQRQARQQAFALTEVVQRRAHFSYSD---SAEMLSE 981
Query: 65 HSGANFILQQQQQQQQQQQQQQQQQQQQQQQ 95
+S N L+Q+ +Q + ++ + ++Q +Q Q
Sbjct: 982 NSDLNEKLRQRLEQAEAERTRAREQLRQHQA 1012
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.126 0.336
Gapped
Lambda K H
0.267 0.0788 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,160,931
Number of extensions: 1060907
Number of successful extensions: 38075
Number of sequences better than 10.0: 1
Number of HSP's gapped: 18670
Number of HSP's successfully gapped: 3569
Length of query: 232
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 138
Effective length of database: 6,768,326
Effective search space: 934028988
Effective search space used: 934028988
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.6 bits)