RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12275
(232 letters)
>1ab8_A Adenylyl cyclase; lyase, complex (transferase-inhibitor); HET: FOK;
2.20A {Rattus norvegicus} SCOP: d.58.29.1 PDB: 1azs_B*
1cjk_B* 1cjt_B* 1cju_B* 1cjv_B* 1cs4_B* 1tl7_B* 1u0h_B*
2gvd_B* 2gvz_B* 3c14_B* 3c15_B* 3c16_B* 3e8a_B* 3g82_B*
3maa_B* 1cul_B*
Length = 220
Score = 44.2 bits (105), Expect = 9e-06
Identities = 21/41 (51%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 123 EIGKQAEHNIIVLVEFAIALVTILDQINRESFQRFRLRMAI 163
E +Q H I +VEFA ALV LD IN+ SF F+LR+ I
Sbjct: 91 EPERQYMH-IGTMVEFAYALVGKLDAINKHSFNDFKLRVGI 130
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein,
abnormal nuclear; zinc-finger, beta barrel, VWA domain,
gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP:
a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Length = 926
Score = 36.0 bits (82), Expect = 0.010
Identities = 15/96 (15%), Positives = 19/96 (19%)
Query: 10 QQQQQQQQQQQQQQQQQQQQQQQHRQQQKQHIKLDTGTEHDCVQDDNGNGRGFDSHSGAN 69
Q Q Q Q + T + Q + + N
Sbjct: 28 QFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHN 87
Query: 70 FILQQQQQQQQQQQQQQQQQQQQQQQHRHRQQQKQH 105
L Q Q Q QQQQ
Sbjct: 88 VPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQ 123
Score = 35.2 bits (80), Expect = 0.015
Identities = 16/100 (16%), Positives = 23/100 (23%)
Query: 6 SSLLQQQQQQQQQQQQQQQQQQQQQQQHRQQQKQHIKLDTGTEHDCVQDDNGNGRGFDSH 65
+ + Q Q Q Q+Q + H + + H
Sbjct: 27 AQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLH 86
Query: 66 SGANFILQQQQQQQQQQQQQQQQQQQQQQQHRHRQQQKQH 105
+ Q Q Q QQQQQ Q
Sbjct: 87 NVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSA 126
Score = 34.4 bits (78), Expect = 0.030
Identities = 17/87 (19%), Positives = 19/87 (21%), Gaps = 11/87 (12%)
Query: 10 QQQQQQQQQQQQQQQQQQQQQQQHRQQQKQHIKLDTGTEHDCVQDDNGNGRGFDSHSGAN 69
Q Q Q Q QQ Q Q +G G
Sbjct: 11 QAQLQYGQNATPLQQPAQFMPPQDPAAAGMS-----------YGQMGMPPQGAVPSMGQQ 59
Query: 70 FILQQQQQQQQQQQQQQQQQQQQQQQH 96
L Q+Q QQ Q H
Sbjct: 60 QFLTPAQEQLHQQIDQATTSMNDMHLH 86
Score = 33.6 bits (76), Expect = 0.050
Identities = 17/97 (17%), Positives = 21/97 (21%), Gaps = 13/97 (13%)
Query: 6 SSLLQQQQQQQQQQQQQQQQQQQQQQQHRQQQKQHIKLDTGTEHDCVQDDNGNGRGFDSH 65
S+ QQQ Q+Q QQ Q +
Sbjct: 54 PSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHN-------------VPLVDPNAYMQPQ 100
Query: 66 SGANFILQQQQQQQQQQQQQQQQQQQQQQQHRHRQQQ 102
QQQQQ Q Q+ Q
Sbjct: 101 VPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNMRPMNQ 137
Score = 32.1 bits (72), Expect = 0.17
Identities = 17/95 (17%), Positives = 23/95 (24%), Gaps = 11/95 (11%)
Query: 10 QQQQQQQQQQQQQQQQQQQQQQQHRQQQKQHIKLDTGTEHDCVQDDNGNGRGFDSHSGAN 69
++ Q Q Q Q QQ Q Q + G
Sbjct: 6 KRVYPQAQLQYGQNATPLQQPAQFMPPQDPA-----------AAGMSYGQMGMPPQGAVP 54
Query: 70 FILQQQQQQQQQQQQQQQQQQQQQQQHRHRQQQKQ 104
+ QQQ Q+Q QQ Q +
Sbjct: 55 SMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVP 89
Score = 31.3 bits (70), Expect = 0.30
Identities = 13/95 (13%), Positives = 19/95 (20%)
Query: 10 QQQQQQQQQQQQQQQQQQQQQQQHRQQQKQHIKLDTGTEHDCVQDDNGNGRGFDSHSGAN 69
+++ Q Q Q Q QQ + Q + G
Sbjct: 4 HKKRVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLT 63
Query: 70 FILQQQQQQQQQQQQQQQQQQQQQQQHRHRQQQKQ 104
+Q QQ Q Q
Sbjct: 64 PAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQ 98
Score = 29.8 bits (66), Expect = 0.88
Identities = 13/94 (13%), Positives = 22/94 (23%)
Query: 12 QQQQQQQQQQQQQQQQQQQQQHRQQQKQHIKLDTGTEHDCVQDDNGNGRGFDSHSGANFI 71
+++ Q Q Q Q + Q + Q S F+
Sbjct: 3 HHKKRVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFL 62
Query: 72 LQQQQQQQQQQQQQQQQQQQQQQQHRHRQQQKQH 105
Q+Q QQ Q + +
Sbjct: 63 TPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAY 96
Score = 26.7 bits (58), Expect = 9.4
Identities = 11/119 (9%), Positives = 25/119 (21%), Gaps = 2/119 (1%)
Query: 1 MTAELSSLLQQQQQQQQQQQQQQQQQQQQQQQHRQQQKQHIKLDTGTEHDCVQDDNGNGR 60
T ++ + Q Q Q QQQ+Q + N R
Sbjct: 76 ATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPM--AAPAYGQPSAAMGQNMR 133
Query: 61 GFDSHSGANFILQQQQQQQQQQQQQQQQQQQQQQQHRHRQQQKQHIKLDKGTEHVFKTT 119
+ + + + ++ + + T +
Sbjct: 134 PMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERMLVPSELSNASPDYIRSTLNAVPKN 192
>1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase
(oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP:
c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0
Length = 370
Score = 33.7 bits (78), Expect = 0.040
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 7/41 (17%)
Query: 150 NRESFQRFRLR------MAILDLNVAILGENFKLLLYL-PT 183
NR +F R R + +D+ ILG + + + PT
Sbjct: 39 NRNAFSRILFRPRILIDVTNIDMTTTILGFKISMPIMIAPT 79
>2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1,
structural genomics, structural genom consortium, SGC,
oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB:
2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A*
Length = 392
Score = 33.3 bits (77), Expect = 0.050
Identities = 10/41 (24%), Positives = 21/41 (51%), Gaps = 7/41 (17%)
Query: 150 NRESFQRFRLR------MAILDLNVAILGENFKLLLYL-PT 183
N +F R++L +A DL+ ++LG+ + + + T
Sbjct: 62 NIAAFSRWKLYPRMLRNVAETDLSTSVLGQRVSMPICVGAT 102
>2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET:
FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A*
2e77_A* 2j6x_A*
Length = 368
Score = 32.5 bits (75), Expect = 0.082
Identities = 8/41 (19%), Positives = 14/41 (34%), Gaps = 7/41 (17%)
Query: 150 NRESFQRFRLR------MAILDLNVAILGENFKLLLYL-PT 183
N +++ L + D + ILG K + P
Sbjct: 48 NDRAWKHKLLYPRLAQDVEAPDTSTEILGHKIKAPFIMAPI 88
>3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH
oxidoreductase-oxidoreductase inhibitor complex; HET:
FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A*
Length = 352
Score = 32.5 bits (75), Expect = 0.10
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 7/41 (17%)
Query: 150 NRESFQRFRLR------MAILDLNVAILGENFKLLLYL-PT 183
N +F+R RLR M+ +D I G+ + + PT
Sbjct: 37 NIAAFKRIRLRPRYLRDMSKVDTRTTIQGQEISAPICISPT 77
>2d5f_A Glycinin A3B4 subunit; soybean, globulin, 11S,SEED storage protein,
plant; 1.90A {Glycine max} PDB: 2d5h_A 1od5_A
Length = 493
Score = 32.6 bits (73), Expect = 0.10
Identities = 19/108 (17%), Positives = 40/108 (37%), Gaps = 12/108 (11%)
Query: 10 QQQQQQQQQQQQQQQQQQQQQQQHRQQQKQHIKLDTGTEH------------DCVQDDNG 57
QQQ ++ + QQQ Q Q+ + + + G + + D +
Sbjct: 92 PQQQSSRRGSRSQQQLQDSHQKIRHFNEGDVLVIPPGVPYWTYNTGDEPVVAISLLDTSN 151
Query: 58 NGRGFDSHSGANFILQQQQQQQQQQQQQQQQQQQQQQQHRHRQQQKQH 105
D + ++ + + QQQQQQ+ + + + QQ++
Sbjct: 152 FNNQLDQNPRVFYLAGNPDIEHPETMQQQQQQKSHGGRKQGQHQQQEE 199
Score = 28.0 bits (61), Expect = 3.3
Identities = 21/125 (16%), Positives = 44/125 (35%), Gaps = 16/125 (12%)
Query: 5 LSSLLQQQQQQQQQQQQQQQQQQQQQQQHRQQQKQH----------------IKLDTGTE 48
L+ + + QQQQQQ+ ++Q QQQ++ + T
Sbjct: 165 LAGNPDIEHPETMQQQQQQKSHGGRKQGQHQQQEEEGGSVLSGFSKHFLAQSFNTNEDTA 224
Query: 49 HDCVQDDNGNGRGFDSHSGANFILQQQQQQQQQQQQQQQQQQQQQQQHRHRQQQKQHIKL 108
D+ + G + I + Q+Q+ + + + ++ +Q R +H
Sbjct: 225 EKLRSPDDERKQIVTVEGGLSVISPKWQEQEDEDEDEDEEYEQTPSYPPRRPSHGKHEDD 284
Query: 109 DKGTE 113
+ E
Sbjct: 285 EDEDE 289
>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer,
oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces
cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A*
1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A*
1qcw_A* 3ks0_A*
Length = 511
Score = 32.3 bits (74), Expect = 0.11
Identities = 7/41 (17%), Positives = 18/41 (43%), Gaps = 7/41 (17%)
Query: 150 NRESFQRFRLR------MAILDLNVAILGENFKLLLYL-PT 183
N ++ R + + +D++ +LG + + Y+ T
Sbjct: 157 NHNAYHRIFFKPKILVDVRKVDISTDMLGSHVDVPFYVSAT 197
>1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing
enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas
putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A*
2a7p_A* 2a85_A* 2a7n_A*
Length = 380
Score = 32.2 bits (74), Expect = 0.12
Identities = 11/41 (26%), Positives = 21/41 (51%), Gaps = 7/41 (17%)
Query: 150 NRESFQRFRLR------MAILDLNVAILGENFKLLLYL-PT 183
NR+ FQ++R + ++ L +LG+ + L + PT
Sbjct: 40 NRDVFQQWRFKPKRLVDVSRRSLQAEVLGKRQSMPLLIGPT 80
>2qdz_A TPSB transporter FHAC; beta barrel, potra domain, membrane,
protein transport; 3.15A {Bordetella pertussis} PDB:
3njt_A
Length = 554
Score = 31.7 bits (71), Expect = 0.19
Identities = 5/53 (9%), Positives = 19/53 (35%)
Query: 11 QQQQQQQQQQQQQQQQQQQQQQHRQQQKQHIKLDTGTEHDCVQDDNGNGRGFD 63
+ + +Q+++Q Q+ ++ + + + + D +G
Sbjct: 8 ARDLNRIDDRQRKEQLQRDIERALTRPPVELNPQSEAAAPARKPDATSGHTVT 60
Score = 31.3 bits (70), Expect = 0.27
Identities = 4/26 (15%), Positives = 13/26 (50%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQR 215
+ + +Q+++Q Q+ ++ R
Sbjct: 8 ARDLNRIDDRQRKEQLQRDIERALTR 33
Score = 31.3 bits (70), Expect = 0.28
Identities = 5/30 (16%), Positives = 13/30 (43%)
Query: 10 QQQQQQQQQQQQQQQQQQQQQQQHRQQQKQ 39
Q Q + + +Q+++Q R ++
Sbjct: 1 QAQLLPGARDLNRIDDRQRKEQLQRDIERA 30
Score = 31.3 bits (70), Expect = 0.29
Identities = 4/32 (12%), Positives = 14/32 (43%)
Query: 189 LQQQQQQQQQQQQQQQQQQQQQQQQQRTMSEQ 220
L + +Q+++Q Q+ ++ + +
Sbjct: 11 LNRIDDRQRKEQLQRDIERALTRPPVELNPQS 42
Score = 31.3 bits (70), Expect = 0.30
Identities = 7/40 (17%), Positives = 19/40 (47%)
Query: 9 LQQQQQQQQQQQQQQQQQQQQQQQHRQQQKQHIKLDTGTE 48
L + + +Q+++Q Q+ R + ++L+ +E
Sbjct: 4 LLPGARDLNRIDDRQRKEQLQRDIERALTRPPVELNPQSE 43
Score = 30.9 bits (69), Expect = 0.32
Identities = 6/35 (17%), Positives = 16/35 (45%)
Query: 3 AELSSLLQQQQQQQQQQQQQQQQQQQQQQQHRQQQ 37
A+L + + +Q+++Q Q+ ++ R
Sbjct: 2 AQLLPGARDLNRIDDRQRKEQLQRDIERALTRPPV 36
Score = 30.9 bits (69), Expect = 0.39
Identities = 7/41 (17%), Positives = 19/41 (46%)
Query: 73 QQQQQQQQQQQQQQQQQQQQQQQHRHRQQQKQHIKLDKGTE 113
Q + + +Q+++Q Q+ R + ++L+ +E
Sbjct: 3 QLLPGARDLNRIDDRQRKEQLQRDIERALTRPPVELNPQSE 43
Score = 30.5 bits (68), Expect = 0.45
Identities = 4/33 (12%), Positives = 14/33 (42%)
Query: 7 SLLQQQQQQQQQQQQQQQQQQQQQQQHRQQQKQ 39
L + +Q+++Q Q+ ++ + +
Sbjct: 10 DLNRIDDRQRKEQLQRDIERALTRPPVELNPQS 42
Score = 30.5 bits (68), Expect = 0.49
Identities = 5/32 (15%), Positives = 13/32 (40%)
Query: 73 QQQQQQQQQQQQQQQQQQQQQQQHRHRQQQKQ 104
Q Q + + +Q+++Q R ++
Sbjct: 1 QAQLLPGARDLNRIDDRQRKEQLQRDIERALT 32
Score = 30.5 bits (68), Expect = 0.49
Identities = 3/26 (11%), Positives = 12/26 (46%)
Query: 191 QQQQQQQQQQQQQQQQQQQQQQQQRT 216
+ + +Q+++Q Q+ ++
Sbjct: 8 ARDLNRIDDRQRKEQLQRDIERALTR 33
Score = 30.1 bits (67), Expect = 0.57
Identities = 6/38 (15%), Positives = 17/38 (44%)
Query: 67 GANFILQQQQQQQQQQQQQQQQQQQQQQQHRHRQQQKQ 104
GA + + +Q+++Q Q+ ++ + Q +
Sbjct: 7 GARDLNRIDDRQRKEQLQRDIERALTRPPVELNPQSEA 44
Score = 30.1 bits (67), Expect = 0.58
Identities = 5/26 (19%), Positives = 12/26 (46%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQR 215
Q Q + + +Q+++Q Q+
Sbjct: 1 QAQLLPGARDLNRIDDRQRKEQLQRD 26
Score = 30.1 bits (67), Expect = 0.62
Identities = 4/30 (13%), Positives = 13/30 (43%)
Query: 10 QQQQQQQQQQQQQQQQQQQQQQQHRQQQKQ 39
Q + + +Q+++Q Q+ ++
Sbjct: 3 QLLPGARDLNRIDDRQRKEQLQRDIERALT 32
Score = 30.1 bits (67), Expect = 0.67
Identities = 4/26 (15%), Positives = 11/26 (42%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQR 215
Q + + +Q+++Q Q+
Sbjct: 2 AQLLPGARDLNRIDDRQRKEQLQRDI 27
Score = 30.1 bits (67), Expect = 0.68
Identities = 3/32 (9%), Positives = 14/32 (43%)
Query: 189 LQQQQQQQQQQQQQQQQQQQQQQQQQRTMSEQ 220
+ +Q+++Q Q+ ++ + + +
Sbjct: 12 NRIDDRQRKEQLQRDIERALTRPPVELNPQSE 43
Score = 30.1 bits (67), Expect = 0.69
Identities = 3/25 (12%), Positives = 12/25 (48%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQ 214
+ +Q+++Q Q+ ++ +
Sbjct: 10 DLNRIDDRQRKEQLQRDIERALTRP 34
Score = 29.7 bits (66), Expect = 0.96
Identities = 4/34 (11%), Positives = 15/34 (44%)
Query: 71 ILQQQQQQQQQQQQQQQQQQQQQQQHRHRQQQKQ 104
+L + + +Q+++Q Q+ + + +
Sbjct: 4 LLPGARDLNRIDDRQRKEQLQRDIERALTRPPVE 37
Score = 29.4 bits (65), Expect = 1.2
Identities = 4/27 (14%), Positives = 13/27 (48%)
Query: 189 LQQQQQQQQQQQQQQQQQQQQQQQQQR 215
L + + +Q+++Q Q+ ++
Sbjct: 4 LLPGARDLNRIDDRQRKEQLQRDIERA 30
Score = 29.4 bits (65), Expect = 1.3
Identities = 4/30 (13%), Positives = 12/30 (40%)
Query: 10 QQQQQQQQQQQQQQQQQQQQQQQHRQQQKQ 39
Q + + +Q+++Q Q ++
Sbjct: 2 AQLLPGARDLNRIDDRQRKEQLQRDIERAL 31
Score = 29.4 bits (65), Expect = 1.3
Identities = 5/31 (16%), Positives = 14/31 (45%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQRTMSEQ 220
+Q+++Q Q+ ++ + + SE
Sbjct: 14 IDDRQRKEQLQRDIERALTRPPVELNPQSEA 44
Score = 29.0 bits (64), Expect = 1.5
Identities = 5/36 (13%), Positives = 19/36 (52%)
Query: 2 TAELSSLLQQQQQQQQQQQQQQQQQQQQQQQHRQQQ 37
+L+ + +Q+++Q Q+ ++ + + + Q +
Sbjct: 8 ARDLNRIDDRQRKEQLQRDIERALTRPPVELNPQSE 43
Score = 29.0 bits (64), Expect = 1.6
Identities = 4/31 (12%), Positives = 12/31 (38%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQRTMSEQ 220
Q + + +Q+++Q Q+ +
Sbjct: 3 QLLPGARDLNRIDDRQRKEQLQRDIERALTR 33
Score = 28.6 bits (63), Expect = 1.9
Identities = 4/32 (12%), Positives = 12/32 (37%)
Query: 73 QQQQQQQQQQQQQQQQQQQQQQQHRHRQQQKQ 104
Q + + +Q+++Q Q + +
Sbjct: 2 AQLLPGARDLNRIDDRQRKEQLQRDIERALTR 33
Score = 28.6 bits (63), Expect = 2.0
Identities = 5/44 (11%), Positives = 17/44 (38%)
Query: 10 QQQQQQQQQQQQQQQQQQQQQQQHRQQQKQHIKLDTGTEHDCVQ 53
+Q+++Q Q+ ++ + + + + + T V
Sbjct: 17 RQRKEQLQRDIERALTRPPVELNPQSEAAAPARKPDATSGHTVT 60
Score = 28.6 bits (63), Expect = 2.0
Identities = 7/40 (17%), Positives = 17/40 (42%)
Query: 192 QQQQQQQQQQQQQQQQQQQQQQQRTMSEQCKIRSTIVIRP 231
Q Q + + +Q+++Q + E+ R + + P
Sbjct: 1 QAQLLPGARDLNRIDDRQRKEQLQRDIERALTRPPVELNP 40
Score = 28.2 bits (62), Expect = 2.4
Identities = 4/31 (12%), Positives = 15/31 (48%)
Query: 9 LQQQQQQQQQQQQQQQQQQQQQQQHRQQQKQ 39
+ +Q+++Q Q+ ++ + + Q +
Sbjct: 14 IDDRQRKEQLQRDIERALTRPPVELNPQSEA 44
Score = 27.0 bits (59), Expect = 6.2
Identities = 3/31 (9%), Positives = 15/31 (48%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQRTMSEQ 220
+Q+++Q Q+ ++ + + ++ +
Sbjct: 16 DRQRKEQLQRDIERALTRPPVELNPQSEAAA 46
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.7 bits (71), Expect = 0.19
Identities = 12/79 (15%), Positives = 28/79 (35%), Gaps = 10/79 (12%)
Query: 100 QQQKQHIKLDK----GTEHVFKTTMVMEIGKQAEHNIIVLVEFAIALVTILDQI-NRESF 154
QK ++D ++H + + + ++ + L+ +L + N +++
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL-VLLNVQNAKAW 259
Query: 155 QRFRLRMAIL----DLNVA 169
F L IL V
Sbjct: 260 NAFNLSCKILLTTRFKQVT 278
Score = 29.1 bits (64), Expect = 1.4
Identities = 16/87 (18%), Positives = 30/87 (34%), Gaps = 18/87 (20%)
Query: 120 MVMEIGKQAEHNIIVLVEFAIALVTILDQINRESFQRFRLRMAILDLNVAIL-GENFKLL 178
M E G+ +L F A V D + + D+ +IL E +
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFDCKD------------VQDMPKSILSKEEIDHI 54
Query: 179 LYLP-----TYLIFFLQQQQQQQQQQQ 200
+ T +F+ +Q++ Q+
Sbjct: 55 IMSKDAVSGTLRLFWTLLSKQEEMVQK 81
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 30.9 bits (69), Expect = 0.25
Identities = 12/95 (12%), Positives = 38/95 (40%), Gaps = 26/95 (27%)
Query: 1 MTAELSSLLQQQQQQQQQQQQQQQQQQQQQQQHRQQQKQHIKLDTGTEHDCVQDDNGNGR 60
+T E S+ + +++Q+++ Q+ + +Q+ R++ K+ ++
Sbjct: 80 LTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLE------------------ 121
Query: 61 GFDSHSGANFILQQQQQQQQQQQQQQQQQQQQQQQ 95
+ +Q +Q ++ + + + QQ
Sbjct: 122 --------EWNQRQSEQVEKNKINNRIADKAFYQQ 148
Score = 28.2 bits (62), Expect = 1.6
Identities = 6/62 (9%), Positives = 28/62 (45%), Gaps = 9/62 (14%)
Query: 73 QQQQQQQQQQQQQQQQQQQQQQQHRHRQQQKQ-HIKLDKGTEHVFKTTMVMEIGKQAEHN 131
+ +Q+ +++ ++ ++ ++ + +Q + + ++ + F +Q + +
Sbjct: 101 LDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFY--------QQPDAD 152
Query: 132 II 133
II
Sbjct: 153 II 154
Score = 27.4 bits (60), Expect = 3.7
Identities = 8/103 (7%), Positives = 38/103 (36%), Gaps = 29/103 (28%)
Query: 5 LSSLLQQQQQQQQQQQQQQQQQQQQQQQHRQQQKQHIKLDTGTEHDCVQDDNGNGRGFDS 64
++ + Q+ + ++ +++Q+++ Q+ + +
Sbjct: 74 IAQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQE---------------------- 111
Query: 65 HSGANFILQQQQQQQQQQQQQQQQQQQQQQQHRHRQQQKQHIK 107
+++ ++ ++ Q+Q +Q ++ + +R K +
Sbjct: 112 -------WREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQ 147
>1zxu_A AT5G01750 protein; PFAM PF01167, TULP, structural genomics, protein
structure initiative, center for eukaryotic structural
genomics, CESG; 1.70A {Arabidopsis thaliana} SCOP:
d.23.1.2 PDB: 2q4m_A
Length = 217
Score = 28.9 bits (64), Expect = 1.1
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 138 FAIALVTILDQINRES 153
F +LV ILD +NRE
Sbjct: 199 FIASLVVILDDVNRED 214
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural
genomics, protein structure initiative; 2.60A
{Clostridium phytofermentans isdg}
Length = 141
Score = 28.3 bits (64), Expect = 1.2
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 4 ELSSLLQQQQQQQQQQQQQQQQQQQQQQQH 33
E+ L+Q Q Q Q QQ + H
Sbjct: 112 EIMDALKQSIQTVLQHQAQQDSEGHHHHHH 141
>3ob4_A Conglutin, maltose ABC transporter periplasmic protein, ARAH;
alpha-amylase inhibitors (AAI), lipid transfer (LT) and
SEED (SS) protein family; HET: MLR; 2.71A {Escherichia
coli}
Length = 500
Score = 28.3 bits (63), Expect = 2.2
Identities = 12/35 (34%), Positives = 23/35 (65%)
Query: 191 QQQQQQQQQQQQQQQQQQQQQQQQRTMSEQCKIRS 225
QQ + Q + Q +QQ+QQ +++ R + +QC +R+
Sbjct: 450 QQIMENQSDRLQGRQQEQQFKRELRNLPQQCGLRA 484
Score = 28.3 bits (63), Expect = 2.7
Identities = 17/107 (15%), Positives = 34/107 (31%), Gaps = 8/107 (7%)
Query: 9 LQQQQQQQQQQQQQQQQQQQQQQQHRQQQKQHIK--------LDTGTEHDCVQDDNGNGR 60
Q ++ Q Q ++ + +QH Q+ Q + + + D
Sbjct: 364 AQTNAAARRCQSQLERANLRPCEQHLMQKIQRDEDSYERDPYSPSQDPYSPSPYDRRGAG 423
Query: 61 GFDSHSGANFILQQQQQQQQQQQQQQQQQQQQQQQHRHRQQQKQHIK 107
L + + Q+ + QQ + Q +QQ+Q K
Sbjct: 424 SSQHQERCCNELNEFENNQRCMCEALQQIMENQSDRLQGRQQEQQFK 470
Score = 26.8 bits (59), Expect = 6.9
Identities = 17/119 (14%), Positives = 39/119 (32%), Gaps = 11/119 (9%)
Query: 1 MTAELSSLLQQQQQQQQQQQQQQQQQQQQQQQHRQQQKQHIKLDTGTEHDCVQDDNGNG- 59
++ Q Q ++ + +Q Q+ Q+ ++ + + D
Sbjct: 364 AQTNAAARRCQSQLERANLRPCEQHLMQKIQRDEDSYERDPYSPSQDPYSPSPYDRRGAG 423
Query: 60 --RGFDS--------HSGANFILQQQQQQQQQQQQQQQQQQQQQQQHRHRQQQKQHIKL 108
+ + + + + QQ + Q + Q +QQ+QQ R + Q L
Sbjct: 424 SSQHQERCCNELNEFENNQRCMCEALQQIMENQSDRLQGRQQEQQFKRELRNLPQQCGL 482
>3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate
isomerase, TIM-barrel; 2.04A {Streptococcus mutans}
Length = 365
Score = 28.2 bits (63), Expect = 2.2
Identities = 8/38 (21%), Positives = 12/38 (31%), Gaps = 8/38 (21%)
Query: 148 QINRESFQRFRLRMAIL--------DLNVAILGENFKL 177
+ SF L L DL+ G++F
Sbjct: 50 RSPYNSFDDIELIHHSLPDYDLAEIDLSTHFAGQDFDF 87
>3o0p_A Sortase family protein; PILI assembly, PILI subunits, transferase
,hydrolas transferase, hydrolase; 1.30A {Streptococcus
agalactiae}
Length = 216
Score = 28.0 bits (62), Expect = 2.6
Identities = 5/40 (12%), Positives = 15/40 (37%)
Query: 68 ANFILQQQQQQQQQQQQQQQQQQQQQQQHRHRQQQKQHIK 107
+F Q Q ++ ++ Q++ ++ Q +
Sbjct: 1 GSFTESNNQTQDFERAAKKLSQKEINRRMALAQAYNDSLN 40
>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis,
dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus
subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*
Length = 349
Score = 27.4 bits (61), Expect = 4.2
Identities = 5/46 (10%), Positives = 9/46 (19%), Gaps = 8/46 (17%)
Query: 140 IALVTILDQINRESFQRFRLRMAIL--------DLNVAILGENFKL 177
I + Q L D++ I +
Sbjct: 11 INHALSIGQKRETGLDDITFVHVSLPDLALEQVDISTKIGELSSSS 56
>3fz3_A Prunin; TREE NUT allergen, allergy, amandin, almond, 11S SEED
storage protein, allergen; 2.40A {Prunus dulcis} PDB:
3ehk_A
Length = 531
Score = 27.6 bits (60), Expect = 4.8
Identities = 23/90 (25%), Positives = 44/90 (48%)
Query: 15 QQQQQQQQQQQQQQQQQQHRQQQKQHIKLDTGTEHDCVQDDNGNGRGFDSHSGANFILQQ 74
+ ++ QQ QQ +QQ+ Q+++Q + + G + + QQ
Sbjct: 89 PETFEESQQSSQQGRQQEQEQERQQQQQGEQGRQQGQQEQQQERQGRQQGRQQQEEGRQQ 148
Query: 75 QQQQQQQQQQQQQQQQQQQQQHRHRQQQKQ 104
+QQQ QQ + QQQQQ +Q +H+ ++ ++
Sbjct: 149 EQQQGQQGRPQQQQQFRQLDRHQKTRRIRE 178
>3lj5_A Portal protein, protein GP1; DNA ejection, molecular motor, DNA
packaging podoviridae, virus assembly, tail tube, trunk
domain; 7.50A {Enterobacteria phage P22}
Length = 725
Score = 27.3 bits (59), Expect = 5.8
Identities = 15/108 (13%), Positives = 33/108 (30%)
Query: 10 QQQQQQQQQQQQQQQQQQQQQQQHRQQQKQHIKLDTGTEHDCVQDDNGNGRGFDSHSGAN 69
+ ++QQ + QQ +Q QQ Q Q ++ Q + +
Sbjct: 585 ETPEEQQWLVEAQQAKQGQQDPAMVQAQGVLLQGQAELAKAQNQTLSLQIDAAKVEAQNQ 644
Query: 70 FILQQQQQQQQQQQQQQQQQQQQQQQHRHRQQQKQHIKLDKGTEHVFK 117
+ + +Q + ++ + QQ + E + K
Sbjct: 645 LNAARIAEIFNNMDLSKQSEFREFLKTVASFQQDRSEDARANAELLLK 692
>2xwg_A Sortase; hydrolase, fimbrial assembly; 2.40A {Actinomyces oris}
Length = 235
Score = 26.5 bits (58), Expect = 8.2
Identities = 7/45 (15%), Positives = 11/45 (24%), Gaps = 1/45 (2%)
Query: 176 KLLLYLPTYLIFFLQQQQQQQQQQQQQQQQQQQQQQQQQRTMSEQ 220
PT + Q Q +QQ+ + E
Sbjct: 11 SDYDI-PTTENLYFQGAMATQHNNDEQQRLAKMYTATVNSAGPET 54
Score = 26.1 bits (57), Expect = 9.2
Identities = 3/38 (7%), Positives = 9/38 (23%)
Query: 178 LLYLPTYLIFFLQQQQQQQQQQQQQQQQQQQQQQQQQR 215
L + +QQ+ + + +
Sbjct: 21 LYFQGAMATQHNNDEQQRLAKMYTATVNSAGPETIAKE 58
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.126 0.336
Gapped
Lambda K H
0.267 0.0509 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,938,767
Number of extensions: 156095
Number of successful extensions: 4934
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2556
Number of HSP's successfully gapped: 635
Length of query: 232
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 142
Effective length of database: 4,188,903
Effective search space: 594824226
Effective search space used: 594824226
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.9 bits)