RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12275
(232 letters)
>d1tb3a1 c.1.4.1 (A:1-349) Hydroxyacid oxidase {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 349
Score = 36.8 bits (84), Expect = 0.001
Identities = 12/77 (15%), Positives = 24/77 (31%), Gaps = 6/77 (7%)
Query: 150 NRESFQRFRLRMAIL------DLNVAILGENFKLLLYLPTYLIFFLQQQQQQQQQQQQQQ 203
N +F+R RLR L D I G+ + + + ++ + Q
Sbjct: 37 NIAAFKRIRLRPRYLRDMSKVDTRTTIQGQEISAPICISPTAFHSIAWPDGEKSTARAAQ 96
Query: 204 QQQQQQQQQQQRTMSEQ 220
+ + S +
Sbjct: 97 EANICYVISSYASYSLE 113
>d1fxza1 b.82.1.2 (A:10-248) Seed storage 7S protein {Soybean
(Glycine max), proglycinin [TaxId: 3847]}
Length = 239
Score = 34.5 bits (79), Expect = 0.006
Identities = 21/106 (19%), Positives = 45/106 (42%), Gaps = 10/106 (9%)
Query: 10 QQQQQQQQQQQQQQQQQQQQQQQHRQQQKQHIKLDTGTEHDCVQDDNGNGRGFDSHSGAN 69
++ QQ QQ+ Q + Q + Q+ + ++ I + TG +++ +
Sbjct: 83 FEEPQQPQQRGQSSRPQDRHQKIYNFREGDLIAVPTGVAWWMYNNEDTPVVAVSIIDTNS 142
Query: 70 FILQQQQ----------QQQQQQQQQQQQQQQQQQQHRHRQQQKQH 105
Q Q Q+Q+ + QQ+Q Q Q+ +H+Q+++
Sbjct: 143 LENQLDQMPRRFYLAGNQEQEFLKYQQEQGGHQSQKGKHQQEEENE 188
>d1od5a1 b.82.1.2 (A:7-251) Seed storage 7S protein {Soybean
(Glycine max), glycinin A3B4 [TaxId: 3847]}
Length = 245
Score = 32.9 bits (75), Expect = 0.019
Identities = 21/115 (18%), Positives = 39/115 (33%), Gaps = 20/115 (17%)
Query: 11 QQQQQQQQQQQQQQQQQQQQQQHRQQQKQH-------IKLDTGTEHDCVQDDNGNGRGFD 63
+ ++ QQQ ++ + QQQ QK + + G + +
Sbjct: 80 PETFEKPQQQSSRRGSRSQQQLQDSHQKIRHFNEGDVLVIPPGVPYWTYNTGDEPVVAIS 139
Query: 64 SHSGANFILQ-------------QQQQQQQQQQQQQQQQQQQQQQHRHRQQQKQH 105
+NF Q + + QQQQQQ+ ++ QQQ++
Sbjct: 140 LLDTSNFNNQLDQNPRVFYLAGNPDIEHPETMQQQQQQKSHGGRKQGQHQQQEEE 194
Score = 27.5 bits (61), Expect = 1.1
Identities = 28/147 (19%), Positives = 51/147 (34%), Gaps = 25/147 (17%)
Query: 69 NFILQQQQQQQQQQQQQQQQQQQQQQQHRHRQQQKQHIKLDKGTEHVFKTTMVMEIGKQA 128
F + ++ QQQ ++ + QQ QK F V+ I
Sbjct: 73 GFAFPGCPETFEKPQQQSSRRGSRSQQQLQDSHQKI---------RHFNEGDVLVIPPGV 123
Query: 129 EHNIIVLVEFAIALVTILDQINRESFQRFRLRMAILDLNVAILGENFKLLLYLPTYLIFF 188
+ + + +++LD N + L +N ++ I
Sbjct: 124 PYWTYNTGDEPVVAISLLDTSNFNN----------------QLDQNPRVFYLAGNPDIEH 167
Query: 189 LQQQQQQQQQQQQQQQQQQQQQQQQQR 215
+ QQQQQQ+ ++Q Q QQQ++
Sbjct: 168 PETMQQQQQQKSHGGRKQGQHQQQEEE 194
Score = 26.0 bits (57), Expect = 3.4
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQRTMSEQCKIR 224
++ QQQ ++ + QQQ Q Q+ R +E +
Sbjct: 84 EKPQQQSSRRGSRSQQQLQDSHQKIRHFNEGDVLV 118
>d1goxa_ c.1.4.1 (A:) Glycolate oxidase {Spinach (Spinacia oleracea)
[TaxId: 3562]}
Length = 359
Score = 32.6 bits (73), Expect = 0.031
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 7/42 (16%)
Query: 150 NRESFQRFRLRMAIL------DLNVAILGENFKL-LLYLPTY 184
NR +F R R IL D+ ILG + ++ PT
Sbjct: 38 NRNAFSRILFRPRILIDVTNIDMTTTILGFKISMPIMIAPTA 79
>d1p4ca_ c.1.4.1 (A:) Membrane-associated (S)-mandelate
dehydrogenase {Pseudomonas putida [TaxId: 303]}
Length = 353
Score = 31.9 bits (71), Expect = 0.053
Identities = 12/77 (15%), Positives = 25/77 (32%), Gaps = 6/77 (7%)
Query: 150 NRESFQRFRLRMAIL------DLNVAILGENFKLLLYLPTYLIFFLQQQQQQQQQQQQQQ 203
NR+ FQ++R + L L +LG+ + L + + + +
Sbjct: 37 NRDVFQQWRFKPKRLVDVSRRSLQAEVLGKRQSMPLLIGPTGLNGALWPKGDLALARAAT 96
Query: 204 QQQQQQQQQQQRTMSEQ 220
+ MS +
Sbjct: 97 KAGIPFVLSTASNMSIE 113
>d2q4ma1 d.23.1.2 (A:24-212) Hypothetical protein At5g01750 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 189
Score = 29.9 bits (67), Expect = 0.16
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 138 FAIALVTILDQINR 151
F +LV ILD +NR
Sbjct: 176 FIASLVVILDDVNR 189
>d1kbia1 c.1.4.1 (A:98-511) Flavocytochrome b2, C-terminal domain
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 414
Score = 29.5 bits (65), Expect = 0.36
Identities = 8/38 (21%), Positives = 17/38 (44%), Gaps = 6/38 (15%)
Query: 150 NRESFQRFRLRMAIL------DLNVAILGENFKLLLYL 181
N ++ R + IL D++ +LG + + Y+
Sbjct: 60 NHNAYHRIFFKPKILVDVRKVDISTDMLGSHVDVPFYV 97
>d1vcfa1 c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-isomerase
{Thermus thermophilus [TaxId: 274]}
Length = 310
Score = 29.5 bits (65), Expect = 0.36
Identities = 10/40 (25%), Positives = 13/40 (32%), Gaps = 8/40 (20%)
Query: 150 NRESFQRFRLRMAIL--------DLNVAILGENFKLLLYL 181
+ FRLR L DL LG+ K +
Sbjct: 2 TTTGLEGFRLRYQALAGLALSEVDLTTPFLGKTLKAPFLI 41
>d2a9ua1 a.118.23.1 (A:6-139) Ubiquitin carboxyl-terminal hydrolase
8, USH8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 134
Score = 26.8 bits (59), Expect = 1.3
Identities = 8/36 (22%), Positives = 24/36 (66%)
Query: 4 ELSSLLQQQQQQQQQQQQQQQQQQQQQQQHRQQQKQ 39
LS L+ + ++ + +++ +++ +Q++ Q QQ++Q
Sbjct: 99 RLSESLKLRYEEAEVRKKLEEKDRQEEAQRLQQKRQ 134
>d2d81a1 c.69.1.37 (A:21-338) Polyhydroxybutyrate depolymerase
{Penicillium funiculosum [TaxId: 28572]}
Length = 318
Score = 25.8 bits (56), Expect = 5.2
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 49 HDCVQDDNGNGRGFDSHSGAN 69
H C+Q + G F ++G N
Sbjct: 228 HGCLQSYSSIGSRFIQNTGYN 248
>d1vfsa2 c.1.6.1 (A:13-249) Alanine racemase {Streptomyces
lavendulae [TaxId: 1914]}
Length = 237
Score = 25.3 bits (54), Expect = 7.7
Identities = 6/107 (5%), Positives = 21/107 (19%), Gaps = 5/107 (4%)
Query: 4 ELSSLLQQQQQQQQQQQQQQQQQQQQQQQHRQQQKQHIKLDTGT-----EHDCVQDDNGN 58
++ + + + + + +K DTG + + G
Sbjct: 79 PWREAIETDIDVSVSGMWALDEVRAAARAAGRTARIQLKADTGLGRNGCQPADWAELVGA 138
Query: 59 GRGFDSHSGANFILQQQQQQQQQQQQQQQQQQQQQQQHRHRQQQKQH 105
+ + + Q ++
Sbjct: 139 AVAAQAEGTVQVTGVWSHFACADEPGHPSIRLQLDAFRDMLAYAEKE 185
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.126 0.336
Gapped
Lambda K H
0.267 0.0643 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 708,747
Number of extensions: 30919
Number of successful extensions: 2182
Number of sequences better than 10.0: 1
Number of HSP's gapped: 849
Number of HSP's successfully gapped: 344
Length of query: 232
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 150
Effective length of database: 1,281,736
Effective search space: 192260400
Effective search space used: 192260400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.6 bits)