Query psy12278
Match_columns 300
No_of_seqs 241 out of 1490
Neff 7.5
Searched_HMMs 29240
Date Fri Aug 16 23:13:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12278.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12278hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a25_A Ubiquitin ligase SIAH1; 100.0 3.9E-49 1.3E-53 342.6 15.0 193 108-300 1-193 (193)
2 3hcs_A TNF receptor-associated 99.8 3.4E-21 1.2E-25 163.2 5.8 128 49-183 11-147 (170)
3 3hct_A TNF receptor-associated 99.5 2.5E-15 8.5E-20 119.7 2.3 90 50-142 12-109 (118)
4 3knv_A TNF receptor-associated 99.5 1.2E-15 4.2E-20 125.4 -2.3 87 51-140 26-130 (141)
5 1rmd_A RAG1; V(D)J recombinati 99.5 4.4E-15 1.5E-19 117.7 -0.0 90 50-142 17-115 (116)
6 2egp_A Tripartite motif-contai 98.8 1.8E-09 6.2E-14 78.9 2.8 58 50-108 6-77 (79)
7 3ztg_A E3 ubiquitin-protein li 98.8 1.7E-09 5.7E-14 81.6 2.3 68 50-118 7-85 (92)
8 1t1h_A Gspef-atpub14, armadill 98.8 1.1E-09 3.7E-14 80.1 0.5 62 51-113 3-72 (78)
9 2ecv_A Tripartite motif-contai 98.7 4E-09 1.4E-13 77.8 3.4 58 50-108 13-83 (85)
10 2ecw_A Tripartite motif-contai 98.7 5.4E-09 1.8E-13 77.1 2.6 59 50-109 13-84 (85)
11 1jm7_B BARD1, BRCA1-associated 98.6 4.8E-09 1.6E-13 82.9 0.8 65 49-113 15-84 (117)
12 2ysl_A Tripartite motif-contai 98.6 1.4E-08 4.8E-13 73.0 3.2 49 49-98 13-68 (73)
13 2djb_A Polycomb group ring fin 98.6 1.4E-08 4.7E-13 73.2 2.4 51 48-98 7-61 (72)
14 2ckl_B Ubiquitin ligase protei 98.6 4.7E-09 1.6E-13 87.8 -0.3 65 50-114 48-121 (165)
15 1wgm_A Ubiquitin conjugation f 98.6 1.8E-08 6.1E-13 77.4 2.6 64 50-114 16-87 (98)
16 2y43_A E3 ubiquitin-protein li 98.6 2.7E-09 9.3E-14 81.7 -2.3 65 49-113 15-86 (99)
17 2kr4_A Ubiquitin conjugation f 98.6 1.2E-08 4.2E-13 76.2 1.4 62 50-112 8-76 (85)
18 1e4u_A Transcriptional repress 98.6 1.3E-08 4.5E-13 74.8 1.4 49 50-98 5-61 (78)
19 2kre_A Ubiquitin conjugation f 98.5 3.8E-08 1.3E-12 75.8 3.5 63 50-113 23-92 (100)
20 2csy_A Zinc finger protein 183 98.5 4.1E-08 1.4E-12 72.2 2.8 48 50-98 9-60 (81)
21 3fl2_A E3 ubiquitin-protein li 98.5 1.8E-08 6.2E-13 80.3 0.1 62 50-112 46-116 (124)
22 2ckl_A Polycomb group ring fin 98.5 1.4E-08 4.7E-13 79.0 -0.6 64 49-112 8-82 (108)
23 2yur_A Retinoblastoma-binding 98.5 5.4E-08 1.9E-12 70.4 2.6 49 49-98 8-63 (74)
24 1bor_A Transcription factor PM 98.4 1.3E-07 4.4E-12 64.8 3.9 44 54-98 4-48 (56)
25 2ecy_A TNF receptor-associated 98.4 1.3E-07 4.5E-12 66.7 3.7 48 50-98 9-61 (66)
26 3lrq_A E3 ubiquitin-protein li 98.4 1.6E-08 5.4E-13 77.8 -1.7 61 50-110 16-84 (100)
27 3l11_A E3 ubiquitin-protein li 98.4 6.9E-08 2.4E-12 75.8 2.0 47 51-98 10-61 (115)
28 2ct2_A Tripartite motif protei 98.4 1E-07 3.5E-12 70.8 2.8 48 50-98 9-67 (88)
29 2ysj_A Tripartite motif-contai 98.4 1.2E-07 4E-12 66.3 2.8 45 48-93 12-63 (63)
30 2ecg_A Baculoviral IAP repeat- 98.4 2E-08 6.9E-13 73.0 -1.4 49 50-99 19-68 (75)
31 2d8t_A Dactylidin, ring finger 98.4 1.1E-07 3.8E-12 68.1 2.4 46 52-98 11-60 (71)
32 1z6u_A NP95-like ring finger p 98.4 2.3E-08 8E-13 82.6 -1.7 60 53-113 75-143 (150)
33 4ayc_A E3 ubiquitin-protein li 98.3 3.3E-08 1.1E-12 80.3 -1.4 46 52-98 49-98 (138)
34 2yu4_A E3 SUMO-protein ligase 98.3 8E-08 2.7E-12 73.0 0.7 62 52-113 3-80 (94)
35 4ic3_A E3 ubiquitin-protein li 98.3 6.1E-08 2.1E-12 70.3 -0.1 48 50-98 18-66 (74)
36 2ea6_A Ring finger protein 4; 98.3 1.1E-07 3.9E-12 67.2 0.3 49 50-98 9-67 (69)
37 2ea5_A Cell growth regulator w 98.3 6.3E-07 2.2E-11 63.9 3.8 47 52-99 11-58 (68)
38 2c2l_A CHIP, carboxy terminus 98.2 3.6E-07 1.2E-11 81.9 3.0 62 51-113 203-272 (281)
39 1jm7_A BRCA1, breast cancer ty 98.2 5.8E-08 2E-12 75.6 -2.1 47 51-98 16-69 (112)
40 2ecj_A Tripartite motif-contai 98.2 3.8E-07 1.3E-11 62.3 1.9 44 49-93 8-58 (58)
41 2f42_A STIP1 homology and U-bo 98.2 3.6E-07 1.2E-11 77.5 1.0 63 50-113 100-170 (179)
42 2ect_A Ring finger protein 126 98.2 1.1E-06 3.9E-11 63.7 3.6 49 50-98 9-63 (78)
43 3ng2_A RNF4, snurf, ring finge 98.1 1.8E-07 6.2E-12 66.6 -1.3 47 52-98 6-62 (71)
44 2yho_A E3 ubiquitin-protein li 98.1 3.8E-07 1.3E-11 67.0 -0.1 48 50-98 12-60 (79)
45 1g25_A CDK-activating kinase a 98.1 3.3E-07 1.1E-11 64.3 -0.6 44 55-98 2-54 (65)
46 1iym_A EL5; ring-H2 finger, ub 98.1 2E-06 6.7E-11 58.0 3.0 45 53-97 2-53 (55)
47 2ep4_A Ring finger protein 24; 98.1 1.4E-06 4.7E-11 62.6 2.3 50 50-99 9-64 (74)
48 1chc_A Equine herpes virus-1 r 98.0 1.5E-06 5.1E-11 61.3 2.1 44 55-98 4-51 (68)
49 2ecn_A Ring finger protein 141 98.0 6.8E-07 2.3E-11 63.6 -0.0 47 50-98 9-59 (70)
50 2xeu_A Ring finger protein 4; 98.0 4.4E-07 1.5E-11 63.1 -1.8 44 55-98 2-55 (64)
51 2kiz_A E3 ubiquitin-protein li 97.9 3.1E-06 1.1E-10 59.9 1.9 48 51-98 9-62 (69)
52 2ecm_A Ring finger and CHY zin 97.8 5.1E-06 1.8E-10 55.9 1.8 44 55-98 4-54 (55)
53 1x4j_A Ring finger protein 38; 97.8 5.1E-06 1.8E-10 59.8 1.8 47 52-98 19-71 (75)
54 3t6p_A Baculoviral IAP repeat- 97.8 4E-06 1.4E-10 78.2 1.4 48 50-98 289-337 (345)
55 2yre_A F-box only protein 30; 97.7 9.4E-06 3.2E-10 61.7 2.0 80 76-171 13-92 (100)
56 3htk_C E3 SUMO-protein ligase 97.7 3E-06 1E-10 75.6 -0.9 61 52-112 177-248 (267)
57 2yuc_A TNF receptor-associated 97.6 2.3E-05 7.8E-10 56.7 2.6 55 110-171 13-68 (76)
58 2l0b_A E3 ubiquitin-protein li 97.6 1.2E-05 4.1E-10 60.3 0.7 47 52-98 36-88 (91)
59 4ap4_A E3 ubiquitin ligase RNF 97.6 5.3E-06 1.8E-10 65.8 -1.6 45 54-98 5-59 (133)
60 1v87_A Deltex protein 2; ring- 97.5 3.5E-05 1.2E-09 59.9 2.3 43 56-98 25-93 (114)
61 2yre_A F-box only protein 30; 97.5 4.1E-05 1.4E-09 58.2 2.5 58 88-147 38-98 (100)
62 2y1n_A E3 ubiquitin-protein li 97.5 3.4E-05 1.1E-09 72.7 2.3 46 52-98 328-378 (389)
63 2vje_B MDM4 protein; proto-onc 97.4 1.3E-05 4.3E-10 56.1 -1.0 43 56-98 7-55 (63)
64 2vje_A E3 ubiquitin-protein li 97.4 1.4E-05 4.8E-10 56.0 -1.2 44 55-98 7-56 (64)
65 1wim_A KIAA0161 protein; ring 97.3 1.6E-05 5.5E-10 59.9 -2.1 42 55-96 4-61 (94)
66 4ap4_A E3 ubiquitin ligase RNF 97.2 2.9E-05 1E-09 61.4 -1.6 45 54-98 70-124 (133)
67 2ecl_A Ring-box protein 2; RNF 97.2 0.00015 5E-09 53.1 2.1 44 55-98 14-75 (81)
68 3hcs_A TNF receptor-associated 97.0 0.00057 2E-08 56.8 4.9 54 108-169 105-159 (170)
69 2bay_A PRE-mRNA splicing facto 96.6 0.00033 1.1E-08 48.6 0.2 43 56-98 3-49 (61)
70 2yuc_A TNF receptor-associated 96.6 0.00073 2.5E-08 48.5 2.0 64 81-148 10-75 (76)
71 2d9k_A FLN29 gene product; zin 96.6 0.00024 8.2E-09 51.0 -0.7 54 110-171 14-67 (75)
72 3dpl_R Ring-box protein 1; ubi 96.4 0.0013 4.3E-08 50.8 2.0 44 55-98 36-100 (106)
73 4a0k_B E3 ubiquitin-protein li 96.1 0.00098 3.3E-08 52.4 0.0 42 57-98 49-111 (117)
74 3vk6_A E3 ubiquitin-protein li 95.9 0.0014 4.7E-08 49.7 0.1 43 58-100 3-50 (101)
75 2jun_A Midline-1; B-BOX, TRIM, 92.8 0.032 1.1E-06 41.9 1.2 32 55-86 2-35 (101)
76 3hct_A TNF receptor-associated 91.7 0.046 1.6E-06 42.3 0.9 67 105-177 45-114 (118)
77 3k1l_B Fancl; UBC, ring, RWD, 91.7 0.051 1.7E-06 50.2 1.3 45 54-98 306-372 (381)
78 2d9k_A FLN29 gene product; zin 91.2 0.062 2.1E-06 38.0 1.1 48 130-181 3-51 (75)
79 2dlq_A GLI-kruppel family memb 88.6 0.47 1.6E-05 35.6 4.4 107 55-172 6-120 (124)
80 2ct0_A Non-SMC element 1 homol 88.2 0.53 1.8E-05 33.5 4.1 43 55-98 14-63 (74)
81 1rmd_A RAG1; V(D)J recombinati 88.2 0.41 1.4E-05 36.5 3.8 61 105-171 50-114 (116)
82 2eod_A TNF receptor-associated 88.1 0.17 5.7E-06 34.2 1.3 50 112-168 9-59 (66)
83 2cs3_A Protein C14ORF4, MY039 87.8 1.5 5E-05 31.7 6.1 70 54-164 13-85 (93)
84 2d8s_A Cellular modulator of i 86.4 0.42 1.5E-05 34.4 2.7 44 55-98 14-69 (80)
85 1z60_A TFIIH basal transcripti 83.9 0.53 1.8E-05 32.1 2.0 36 58-93 17-58 (59)
86 2yt9_A Zinc finger-containing 80.9 2 6.8E-05 30.4 4.4 53 112-172 34-91 (95)
87 1wfp_A Zinc finger (AN1-like) 80.2 3.7 0.00013 29.1 5.3 36 57-92 26-62 (74)
88 1wg2_A Zinc finger (AN1-like) 79.3 2 6.8E-05 29.6 3.6 37 56-92 15-52 (64)
89 2cup_A Skeletal muscle LIM-pro 78.6 0.91 3.1E-05 33.5 1.9 44 55-98 32-77 (101)
90 2dmd_A Zinc finger protein 64, 78.4 5.6 0.00019 28.0 6.3 77 88-172 9-90 (96)
91 1wjp_A Zinc finger protein 295 77.4 1.5 5.1E-05 32.1 2.9 45 123-171 48-94 (107)
92 2jne_A Hypothetical protein YF 76.9 0.43 1.5E-05 35.7 -0.3 51 57-118 33-86 (101)
93 1wfh_A Zinc finger (AN1-like) 75.9 3 0.0001 28.7 3.7 35 57-91 16-51 (64)
94 1weu_A Inhibitor of growth fam 71.6 12 0.00042 27.4 6.5 42 54-96 34-85 (91)
95 3knv_A TNF receptor-associated 70.5 0.99 3.4E-05 36.0 0.3 31 141-173 102-133 (141)
96 1wfl_A Zinc finger protein 216 69.5 8.1 0.00028 27.3 4.8 36 56-91 25-61 (74)
97 2eod_A TNF receptor-associated 69.1 2.9 9.9E-05 27.7 2.5 28 137-168 4-31 (66)
98 1z2q_A LM5-1; membrane protein 68.8 4.4 0.00015 29.2 3.5 31 56-86 21-54 (84)
99 2jrp_A Putative cytoplasmic pr 67.1 1.7 5.8E-05 31.4 0.9 37 57-98 3-42 (81)
100 2jny_A Uncharacterized BCR; st 66.3 1.5 5.2E-05 30.5 0.5 32 50-84 4-35 (67)
101 1dvp_A HRS, hepatocyte growth 65.8 5.8 0.0002 33.8 4.2 35 52-86 157-194 (220)
102 2jr6_A UPF0434 protein NMA0874 65.6 2 6.7E-05 30.0 1.0 31 51-84 3-33 (68)
103 2dlq_A GLI-kruppel family memb 65.2 12 0.00042 27.3 5.6 88 88-183 8-104 (124)
104 1vfy_A Phosphatidylinositol-3- 62.8 4.9 0.00017 28.1 2.7 29 57-85 12-43 (73)
105 2rpc_A Zinc finger protein ZIC 62.3 39 0.0013 25.8 8.4 111 54-171 23-147 (155)
106 1wff_A Riken cDNA 2810002D23 p 62.0 17 0.00058 26.4 5.4 35 57-92 26-63 (85)
107 3lqh_A Histone-lysine N-methyl 61.3 7.9 0.00027 32.3 4.1 41 58-98 4-65 (183)
108 2drp_A Protein (tramtrack DNA- 61.1 8.3 0.00029 25.0 3.6 52 112-171 9-65 (66)
109 2xqn_T Testin, TESS; metal-bin 60.3 2 6.7E-05 33.0 0.2 44 55-98 29-74 (126)
110 2ee8_A Protein ODD-skipped-rel 60.1 13 0.00044 26.6 4.8 26 142-171 72-98 (106)
111 2js4_A UPF0434 protein BB2007; 59.7 2.5 8.6E-05 29.6 0.6 30 51-83 3-32 (70)
112 1joc_A EEA1, early endosomal a 58.1 4.7 0.00016 31.4 2.0 30 57-86 70-102 (125)
113 1dl6_A Transcription factor II 57.9 8.4 0.00029 25.8 3.0 34 50-85 5-38 (58)
114 1x68_A FHL5 protein; four-and- 57.8 7.2 0.00024 26.9 2.8 38 55-92 34-73 (76)
115 2kmk_A Zinc finger protein GFI 57.8 8.4 0.00029 25.9 3.2 73 89-169 3-80 (82)
116 2jmo_A Parkin; IBR, E3 ligase, 57.7 6.9 0.00024 27.9 2.7 39 56-95 25-75 (80)
117 2j7j_A Transcription factor II 57.7 10 0.00035 25.7 3.7 55 111-170 29-85 (85)
118 2pk7_A Uncharacterized protein 56.9 2.5 8.6E-05 29.6 0.2 30 51-83 3-32 (69)
119 2hf1_A Tetraacyldisaccharide-1 56.8 2.3 8E-05 29.6 0.1 30 51-83 3-32 (68)
120 2ct7_A Ring finger protein 31; 56.6 8.3 0.00028 27.8 3.1 29 57-85 26-59 (86)
121 2ct1_A Transcriptional repress 55.4 14 0.00047 24.8 4.0 53 112-172 14-71 (77)
122 3zyq_A Hepatocyte growth facto 54.3 9.3 0.00032 32.7 3.5 34 52-85 160-196 (226)
123 2gli_A Protein (five-finger GL 54.2 32 0.0011 26.2 6.5 13 57-69 4-16 (155)
124 2yw8_A RUN and FYVE domain-con 52.7 8.2 0.00028 27.6 2.5 30 57-86 20-52 (82)
125 2kpi_A Uncharacterized protein 52.5 3.7 0.00013 27.4 0.5 29 50-83 4-34 (56)
126 1iml_A CRIP, cysteine rich int 51.6 4.6 0.00016 27.9 0.9 43 55-97 26-71 (76)
127 1x4w_A Hypothetical protein FL 49.7 8.1 0.00028 26.8 1.9 29 57-85 16-47 (67)
128 2csh_A Zinc finger protein 297 49.4 10 0.00036 27.4 2.7 53 112-172 36-91 (110)
129 1x4u_A Zinc finger, FYVE domai 48.8 9.6 0.00033 27.3 2.3 29 57-85 15-46 (84)
130 2ctd_A Zinc finger protein 512 48.8 11 0.00039 27.1 2.8 56 109-172 30-88 (96)
131 2dmi_A Teashirt homolog 3; zin 46.7 11 0.00039 27.4 2.5 27 142-172 79-106 (115)
132 3t7l_A Zinc finger FYVE domain 45.0 11 0.00036 27.5 2.0 31 56-86 20-53 (90)
133 2jtn_A LIM domain-binding prot 44.8 6.8 0.00023 32.1 1.1 13 57-69 61-73 (182)
134 3uk3_C Zinc finger protein 217 44.5 11 0.00037 23.5 1.9 45 123-171 10-57 (57)
135 1wfk_A Zinc finger, FYVE domai 44.4 15 0.0005 26.7 2.7 31 56-86 9-42 (88)
136 2d9h_A Zinc finger protein 692 43.9 17 0.00059 24.3 3.0 53 113-173 7-65 (78)
137 1m3v_A FLIN4, fusion of the LI 43.7 5.4 0.00018 30.5 0.2 43 56-98 32-80 (122)
138 2adr_A ADR1; transcription reg 42.6 24 0.00082 22.1 3.4 45 123-171 8-55 (60)
139 3nw0_A Non-structural maintena 42.4 9.7 0.00033 33.0 1.7 43 55-98 179-228 (238)
140 2lt7_A Transcriptional regulat 41.6 15 0.00052 28.3 2.6 76 89-172 24-104 (133)
141 2ko5_A Ring finger protein Z; 41.3 18 0.00062 26.8 2.7 47 50-98 22-72 (99)
142 3vhs_A ATPase wrnip1; zinc fin 40.9 10 0.00036 21.0 1.1 24 112-139 5-28 (29)
143 2k5r_A Uncharacterized protein 40.8 12 0.00042 27.8 1.8 17 51-67 3-19 (97)
144 1a1h_A QGSR zinc finger peptid 40.7 27 0.00092 23.8 3.7 53 110-170 31-86 (90)
145 1y02_A CARP2, FYVE-ring finger 40.7 13 0.00044 28.8 2.0 30 57-86 20-52 (120)
146 1bbo_A Human enhancer-binding 40.1 29 0.00098 21.4 3.4 45 123-171 7-54 (57)
147 1llm_C Chimera of ZIF23-GCN4; 39.4 1.6 5.6E-05 30.7 -3.2 76 89-172 5-84 (88)
148 2lv2_A Insulinoma-associated p 39.4 30 0.001 24.5 3.8 50 114-171 29-81 (85)
149 1x5w_A Zinc finger protein 64, 39.2 26 0.00091 22.8 3.3 52 113-172 9-63 (70)
150 2xjy_A Rhombotin-2; oncoprotei 38.5 4.9 0.00017 30.9 -0.8 44 55-98 28-77 (131)
151 3m62_A Ubiquitin conjugation f 37.8 9.7 0.00033 39.7 1.1 62 51-113 886-955 (968)
152 2rgt_A Fusion of LIM/homeobox 37.6 8.1 0.00028 31.2 0.4 43 55-98 32-76 (169)
153 2i13_A AART; DNA binding, zinc 37.5 36 0.0012 27.1 4.4 74 89-170 79-157 (190)
154 2i13_A AART; DNA binding, zinc 37.4 24 0.00083 28.1 3.3 76 88-171 106-186 (190)
155 1wen_A Inhibitor of growth fam 37.2 46 0.0016 22.9 4.3 42 54-96 14-65 (71)
156 1x3c_A Zinc finger protein 292 35.7 28 0.00095 24.5 2.9 28 142-171 26-54 (73)
157 2vrw_B P95VAV, VAV1, proto-onc 35.7 19 0.00065 33.2 2.7 38 54-91 355-396 (406)
158 2vy4_A U11/U12 small nuclear r 35.3 15 0.00051 22.2 1.3 24 114-140 6-29 (37)
159 2ehe_A Four and A half LIM dom 34.4 21 0.00072 24.7 2.2 33 55-87 42-74 (82)
160 1x61_A Thyroid receptor intera 34.2 7.3 0.00025 26.4 -0.3 30 57-86 34-63 (72)
161 3pwf_A Rubrerythrin; non heme 34.0 20 0.00069 29.3 2.3 9 88-96 154-162 (170)
162 1x4l_A Skeletal muscle LIM-pro 33.9 13 0.00045 25.1 1.0 32 56-87 35-66 (72)
163 1x6e_A Zinc finger protein 24; 32.3 41 0.0014 22.0 3.4 52 112-171 13-67 (72)
164 2epa_A Krueppel-like factor 10 32.0 58 0.002 21.1 4.1 51 113-167 17-70 (72)
165 2gmg_A Hypothetical protein PF 31.8 28 0.00094 26.3 2.5 25 72-97 69-94 (105)
166 2l7x_A Envelope glycoprotein; 29.1 30 0.001 24.1 2.1 38 129-172 18-55 (77)
167 2wbt_A B-129; zinc finger; 2.7 28.7 59 0.002 23.9 4.1 54 110-172 71-126 (129)
168 2ebt_A Krueppel-like factor 5; 28.6 68 0.0023 22.1 4.2 51 113-169 45-98 (100)
169 1rut_X Flinc4, fusion protein 27.9 5.3 0.00018 33.0 -2.4 44 55-98 31-80 (188)
170 2gqj_A Zinc finger protein KIA 27.6 14 0.00047 26.5 0.2 54 111-172 22-80 (98)
171 1x6h_A Transcriptional repress 27.0 64 0.0022 21.5 3.7 53 112-172 14-73 (86)
172 1weo_A Cellulose synthase, cat 26.7 29 0.00099 25.4 1.7 42 57-98 17-69 (93)
173 2egq_A FHL1 protein; LIM domai 26.6 13 0.00045 25.4 -0.1 11 58-68 17-27 (77)
174 2cr8_A MDM4 protein; ZF-ranbp 26.4 46 0.0016 21.6 2.5 29 51-86 6-34 (53)
175 1a7i_A QCRP2 (LIM1); LIM domai 26.2 9.8 0.00033 26.5 -0.9 30 57-86 35-64 (81)
176 1b8t_A Protein (CRP1); LIM dom 26.1 17 0.0006 29.8 0.6 39 55-98 114-153 (192)
177 2iyb_E Testin, TESS, TES; LIM 26.1 18 0.00061 24.0 0.5 11 57-67 33-43 (65)
178 1pft_A TFIIB, PFTFIIBN; N-term 25.8 32 0.0011 21.7 1.7 28 56-85 5-32 (50)
179 1nyp_A Pinch protein; LIM doma 25.6 21 0.00071 23.6 0.8 28 57-84 32-59 (66)
180 2cot_A Zinc finger protein 435 25.6 65 0.0022 21.2 3.5 44 123-170 24-70 (77)
181 1sp2_A SP1F2; zinc finger, tra 25.6 77 0.0026 16.3 3.3 26 142-169 1-27 (31)
182 2fiy_A Protein FDHE homolog; F 25.5 22 0.00074 32.1 1.1 42 55-96 181-231 (309)
183 2dlk_A Novel protein; ZF-C2H2 25.4 71 0.0024 20.9 3.7 54 113-170 7-64 (79)
184 1x4v_A Hypothetical protein LO 25.3 64 0.0022 21.9 3.2 27 56-83 12-41 (63)
185 2jp9_A Wilms tumor 1; DNA bind 25.2 65 0.0022 23.0 3.7 12 57-68 7-20 (119)
186 2d8z_A Four and A half LIM dom 25.2 25 0.00085 23.4 1.2 31 56-86 31-61 (70)
187 1wig_A KIAA1808 protein; LIM d 25.1 19 0.00064 24.6 0.5 32 55-86 30-62 (73)
188 2cuq_A Four and A half LIM dom 25.0 42 0.0014 22.9 2.4 23 76-98 2-26 (80)
189 2eln_A Zinc finger protein 406 24.6 52 0.0018 19.3 2.4 25 142-168 8-33 (38)
190 2jmi_A Protein YNG1, ING1 homo 24.5 34 0.0012 24.9 1.8 24 51-75 21-44 (90)
191 2k9h_A Glycoprotein; hantaviru 23.5 1E+02 0.0036 20.3 3.8 38 128-169 15-52 (57)
192 1x64_A Alpha-actinin-2 associa 23.2 1.9E+02 0.0065 20.0 6.9 42 52-98 21-62 (89)
193 2d8x_A Protein pinch; LIM doma 22.9 25 0.00085 23.5 0.8 28 57-84 32-59 (70)
194 2d8v_A Zinc finger FYVE domain 22.8 44 0.0015 23.0 2.0 30 54-86 6-37 (67)
195 2a25_A Ubiquitin ligase SIAH1; 22.7 43 0.0015 27.7 2.4 46 93-138 16-61 (193)
196 1flk_A TNF receptor associated 22.3 29 0.00099 29.5 1.2 26 113-138 9-39 (228)
197 3k1f_M Transcription initiatio 22.3 51 0.0017 27.3 2.6 36 50-85 15-50 (197)
198 1flk_A TNF receptor associated 21.9 20 0.00068 30.5 0.1 27 142-168 8-39 (228)
199 3mpx_A FYVE, rhogef and PH dom 21.9 19 0.00065 33.4 0.0 30 56-85 375-407 (434)
200 1wfe_A Riken cDNA 2310008M20 p 21.3 57 0.0019 23.5 2.5 28 55-83 24-54 (86)
201 2dar_A PDZ and LIM domain prot 21.2 1.7E+02 0.0057 20.3 5.1 38 56-98 25-62 (90)
202 2cu8_A Cysteine-rich protein 2 21.1 37 0.0012 23.1 1.4 29 57-85 37-66 (76)
203 2zet_C Melanophilin; complex, 21.1 45 0.0016 26.7 2.1 33 55-87 67-103 (153)
204 4cpa_I Metallocarboxypeptidase 21.0 35 0.0012 20.3 1.0 29 60-90 6-34 (38)
205 1vyx_A ORF K3, K3RING; zinc-bi 20.9 40 0.0014 22.3 1.5 44 55-98 5-58 (60)
206 2co8_A NEDD9 interacting prote 20.8 54 0.0019 22.7 2.3 10 58-67 17-26 (82)
207 2wbs_A Krueppel-like factor 4; 20.8 71 0.0024 21.4 2.9 42 122-167 42-86 (89)
208 3i2d_A E3 SUMO-protein ligase 20.8 73 0.0025 29.4 3.7 57 56-112 249-316 (371)
No 1
>2a25_A Ubiquitin ligase SIAH1; protein-peptide complex, ligase; 2.20A {Homo sapiens} PDB: 2an6_A 1k2f_A
Probab=100.00 E-value=3.9e-49 Score=342.57 Aligned_cols=193 Identities=81% Similarity=1.368 Sum_probs=141.0
Q ss_pred hhccccccCCCCCCCceeEeccCChHHHHHhCCCCCccCCCCCCCCcccccHHHHHHHhhhccCccceecCCceEEeeee
Q psy12278 108 VAGTMWFPCRYQMNGCGISLLHTEKPEHEDTCEHRPYLCPCPGASCKWGGALDQVMAHLNQSHKSITTLQGEDIVFLATD 187 (300)
Q Consensus 108 ~~~~l~v~C~~~~~GC~~~~~~~~~~~He~~C~f~~~~Cp~~~~~C~~~g~~~~l~~Hl~~~H~~~~~~~g~~~~f~~~~ 187 (300)
+++++++||+|+.+||++.++|.++..||++|+|+|+.||+++.+|+|+|+.++|..|++..|+++.+.+|++++|++.+
T Consensus 1 v~~s~~~pC~~~~~GC~~~~~y~~~~~He~~C~f~p~~Cp~~g~~C~~~G~~~~l~~H~~~~H~~~~~~~g~~i~f~~~~ 80 (193)
T 2a25_A 1 VANSVLFPCKYASSGCEITLPHTEKADHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMHQHKSITTLQGEDIVFLATD 80 (193)
T ss_dssp -----------------------------------CEECCCC--CCCCEECSTTHHHHHHHHCTTSCEEESSEEEEEEEC
T ss_pred CccceEecCCCCCCCCCcccccccccchhhcCCCCCccCCCCCCCCcCCCCHHHHHHHHHHHCCCcceecCceEEEEecc
Confidence 46789999999999999999999999999999999999999988899999999999999999998778999999999999
Q ss_pred cCCCCceeEEEEEeecCeeEEEEEEEeeecCCceeEEEEEEEecCcCCCCCcEEEEEEeeCCceEEEEecccchhhhhhh
Q psy12278 188 INLPGAVDWVMMQSCFGHHFMLVLEKQEKFDGHQHFFAIVQLIGSRKQSENFTYRLELNGHRRRLTWEATPRSIHEGVAS 267 (300)
Q Consensus 188 ~~l~~~~~~~~~~~c~g~~F~l~~~~~~~~~~~~~~~~~V~~iG~~~~a~~F~Y~l~v~~~~r~l~~~~~~~si~e~~~~ 267 (300)
++++++++|+++|+|+|++|+|++++++...|+++++|+|++|||+++|++|+|+|++.+++|+|+|+++|+|++|++++
T Consensus 81 ~~l~~~~~~~~v~~~~g~~Fll~~~~~~~~~g~~~~~~~V~~ig~~~ea~~f~Y~l~~~~~~r~L~~~~~~~s~~e~~~~ 160 (193)
T 2a25_A 81 INLPGAVDWVMMQSCFGFHFMLVLEKQEKYDGHQQFFAIVQLIGTRKQAENFAYRLELNGHRRRLTWEATPRSIHEGIAT 160 (193)
T ss_dssp CC----CEEEEEEEETTEEEEEEEEEC------CEEEEEEEESSCHHHHTTEEEEEEEEETTEEEEEEECCEETTTCSHH
T ss_pred cccccceeEEEEEEecCceEEEEEEEeccCCCCcEEEEEEEEeCCcchhcceEEEEEEEcCCCEEEEEEEEEehhhcccc
Confidence 99999999999999999999999999987777788999999999999999999999999999999999999999999999
Q ss_pred hccCCCEeEEechhhhhhcCCCceEEEEEEeeC
Q psy12278 268 AIMNSDCLVFDTNIAQLFADNGNLGINVTIGTV 300 (300)
Q Consensus 268 ~~~~~dcl~i~~~~~~~f~~~~~L~i~v~I~~~ 300 (300)
+++++|||+||++++++|+++|+|+|+|+|+++
T Consensus 161 ~~~~~d~L~ip~~~~~~f~~~~~L~l~v~I~~~ 193 (193)
T 2a25_A 161 AIMNSDCLVFDTSIAQLFAENGNLGINVTISMC 193 (193)
T ss_dssp HHHTTCSEEEEHHHHHHHCSSSEEEEEEEEEEC
T ss_pred cccCCCEEEEcHHHHHhhcCCCeEEEEEEEEeC
Confidence 999999999999999999999999999999985
No 2
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.83 E-value=3.4e-21 Score=163.24 Aligned_cols=128 Identities=20% Similarity=0.365 Sum_probs=111.1
Q ss_pred cccCCCCceeecccccCCCCceeeccCCcccCccccCCC-----CCCCCCCCCCCc---ccchHHHhhhccccccCCCCC
Q psy12278 49 TSTDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL-----SCCPTCRGPLGN---IRNLAMEKVAGTMWFPCRYQM 120 (300)
Q Consensus 49 ~~~~l~~~l~CpiC~~~~~~Pi~qC~~GH~~C~~C~~~~-----~~Cp~Cr~~~~~---~rn~~lEk~~~~l~v~C~~~~ 120 (300)
..+.+.+.|.||||.+++.+|+ +++|||+||..|+.+. ..||.||.++.. .++.++++++.++++.|+|.
T Consensus 11 ~~~~~~~~~~C~IC~~~~~~pv-~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~l~v~C~n~- 88 (170)
T 3hcs_A 11 FDPPLESKYECPICLMALREAV-QTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLMVKCPNE- 88 (170)
T ss_dssp ESSCCCGGGBCTTTCSBCSSEE-ECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTSEEECCST-
T ss_pred hccCCCCCCCCCCCChhhcCcE-ECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHHHHHHhhcccCCCCC-
Confidence 3457888999999999999996 6789999999998753 489999999873 58899999999999999984
Q ss_pred CCceeEeccCChHHHHHhCCCCCccCCCCCCCCcccccHHHHHHHhh-hccCccceecCCceEE
Q psy12278 121 NGCGISLLHTEKPEHEDTCEHRPYLCPCPGASCKWGGALDQVMAHLN-QSHKSITTLQGEDIVF 183 (300)
Q Consensus 121 ~GC~~~~~~~~~~~He~~C~f~~~~Cp~~~~~C~~~g~~~~l~~Hl~-~~H~~~~~~~g~~~~f 183 (300)
||++.+++.++..|+++|+|+++.|| +|+|.+.+.+|..|+. .+......+..+...+
T Consensus 89 -GC~~~~~~~~l~~H~~~C~~~~v~C~----~C~~~~~r~~l~~H~~~~C~~r~~~C~~C~~~~ 147 (170)
T 3hcs_A 89 -GCLHKMELRHLEDHQAHCEFALMDCP----QCQRPFQKFHINIHILKDCPRRQVSCDNCAASM 147 (170)
T ss_dssp -TCCCEEEGGGHHHHHTTCTTSEEECT----TTCCEEEGGGHHHHHHHTCTTCEEECTTTCCEE
T ss_pred -CCCceecHhHHHHHHhcCCceeeECC----CCChHHHHHHHHHHhhhhCCCCCeECCCCCCcc
Confidence 99999999999999999999999998 6999999999999995 5555555666665544
No 3
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.52 E-value=2.5e-15 Score=119.71 Aligned_cols=90 Identities=22% Similarity=0.447 Sum_probs=78.3
Q ss_pred ccCCCCceeecccccCCCCceeeccCCcccCccccCCC-----CCCCCCCCCCCc---ccchHHHhhhccccccCCCCCC
Q psy12278 50 STDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL-----SCCPTCRGPLGN---IRNLAMEKVAGTMWFPCRYQMN 121 (300)
Q Consensus 50 ~~~l~~~l~CpiC~~~~~~Pi~qC~~GH~~C~~C~~~~-----~~Cp~Cr~~~~~---~rn~~lEk~~~~l~v~C~~~~~ 121 (300)
.+.+.+.+.||||.+++..|+. .+|||.||..|+.+. ..||.||.++.. .++..+++++.++++.|+| .
T Consensus 12 ~~~~~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~i~~l~v~C~n--~ 88 (118)
T 3hct_A 12 DPPLESKYECPICLMALREAVQ-TPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLMVKCPN--E 88 (118)
T ss_dssp SSCCCGGGBCTTTCSBCSSEEE-CTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTSEEECSS--T
T ss_pred ccCCCCCCCCCcCChhhcCeEE-CCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHHHHccceeECCC--C
Confidence 4577889999999999999974 578999999998753 389999999873 4788999999999999997 5
Q ss_pred CceeEeccCChHHHHHhCCCC
Q psy12278 122 GCGISLLHTEKPEHEDTCEHR 142 (300)
Q Consensus 122 GC~~~~~~~~~~~He~~C~f~ 142 (300)
||++.+.+.+++.|+++|.+.
T Consensus 89 gC~~~~~~~~l~~H~~~c~~~ 109 (118)
T 3hct_A 89 GCLHKMELRHLEDHQAHCEFA 109 (118)
T ss_dssp TCCCEEEGGGSGGGTSSSCC-
T ss_pred CCCCEEeeHHHHHHHHHchhh
Confidence 999999999999999988875
No 4
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.48 E-value=1.2e-15 Score=125.41 Aligned_cols=87 Identities=25% Similarity=0.467 Sum_probs=73.4
Q ss_pred cCCCCceeecccccCCCCceeeccCCcccCccccCCC-----CCCCCCCCCCC------------cccchHHHhhhcccc
Q psy12278 51 TDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL-----SCCPTCRGPLG------------NIRNLAMEKVAGTMW 113 (300)
Q Consensus 51 ~~l~~~l~CpiC~~~~~~Pi~qC~~GH~~C~~C~~~~-----~~Cp~Cr~~~~------------~~rn~~lEk~~~~l~ 113 (300)
+.+.+.+.||||.+++.+|+ +.+|||.||..|+.+. ..||.||.++. ..++.++++.+.+++
T Consensus 26 ~~l~~~~~C~IC~~~~~~pv-~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~~~~i~~L~ 104 (141)
T 3knv_A 26 TKLEAKYLCSACRNVLRRPF-QAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVESLP 104 (141)
T ss_dssp GGCCGGGBCTTTCSBCSSEE-ECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCCTTTTEECGGGCEECHHHHHHHHTSE
T ss_pred ccCCcCcCCCCCChhhcCcE-ECCCCCccCHHHHHHHHhcCCCCCCCCCCcccccccccccchhhhcccHHHHHHHcccc
Confidence 57788999999999999996 6688999999998753 37999998752 137788999999999
Q ss_pred ccCCCCCCCceeEeccCChHH-HHHhCC
Q psy12278 114 FPCRYQMNGCGISLLHTEKPE-HEDTCE 140 (300)
Q Consensus 114 v~C~~~~~GC~~~~~~~~~~~-He~~C~ 140 (300)
+.|+| .||.|.+.+.+++. |+..|+
T Consensus 105 v~Cpn--~GC~~~~~l~~l~~~H~~~~~ 130 (141)
T 3knv_A 105 AVCPS--DGCTWKGTLKEYESCHEGRCP 130 (141)
T ss_dssp EECCS--TTCCCEEEHHHHHHHTTTCCH
T ss_pred cccCC--CCCCCEeEHHHHHHHHHHHhH
Confidence 99998 58888888888887 887665
No 5
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.46 E-value=4.4e-15 Score=117.74 Aligned_cols=90 Identities=19% Similarity=0.413 Sum_probs=77.1
Q ss_pred ccCCCCceeecccccCCCCceeeccCCcccCccccCC-----CCCCCCCCCCCCc----ccchHHHhhhccccccCCCCC
Q psy12278 50 STDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPK-----LSCCPTCRGPLGN----IRNLAMEKVAGTMWFPCRYQM 120 (300)
Q Consensus 50 ~~~l~~~l~CpiC~~~~~~Pi~qC~~GH~~C~~C~~~-----~~~Cp~Cr~~~~~----~rn~~lEk~~~~l~v~C~~~~ 120 (300)
.+++.+.+.||||.+++.+|+. .+|||.||..|+.+ ...||.||.++.. ..+..+++++.++.+.|+|.
T Consensus 17 ~~~~~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~l~v~C~~~- 94 (116)
T 1rmd_A 17 PAHFVKSISCQICEHILADPVE-TSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILNSLMVKCPAQ- 94 (116)
T ss_dssp CHHHHHHTBCTTTCSBCSSEEE-CTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHHHHCEEECCST-
T ss_pred HHhccCCCCCCCCCcHhcCcEE-cCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccccHHHHHHHHHHhcCCCCCC-
Confidence 3456678999999999999974 57899999999864 3579999999862 24677889999999999996
Q ss_pred CCceeEeccCChHHHHHhCCCC
Q psy12278 121 NGCGISLLHTEKPEHEDTCEHR 142 (300)
Q Consensus 121 ~GC~~~~~~~~~~~He~~C~f~ 142 (300)
||++.+++.++..|+++|.+.
T Consensus 95 -gC~~~~~~~~~~~H~~~C~~~ 115 (116)
T 1rmd_A 95 -DCNEEVSLEKYNHHVSSHKES 115 (116)
T ss_dssp -TCCCEEEHHHHHHHHHTSCCC
T ss_pred -CCcchhhHhHHHHHHHHhhcc
Confidence 999999999999999999874
No 6
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.80 E-value=1.8e-09 Score=78.91 Aligned_cols=58 Identities=24% Similarity=0.622 Sum_probs=45.4
Q ss_pred ccCCCCceeecccccCCCCceeeccCCcccCccccCC-----------CCCCCCCCCCCCc---ccchHHHhh
Q psy12278 50 STDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPK-----------LSCCPTCRGPLGN---IRNLAMEKV 108 (300)
Q Consensus 50 ~~~l~~~l~CpiC~~~~~~Pi~qC~~GH~~C~~C~~~-----------~~~Cp~Cr~~~~~---~rn~~lEk~ 108 (300)
.+.+.+.+.||||++.+..|+. .+|||.||..|+.+ ...||.||.++.. .+|..++++
T Consensus 6 ~~~~~~~~~C~IC~~~~~~p~~-l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~l 77 (79)
T 2egp_A 6 SGNVQEEVTCPICLELLTEPLS-LDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQHLANI 77 (79)
T ss_dssp SCCCCCCCEETTTTEECSSCCC-CSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSSSCCC
T ss_pred HhhcccCCCCcCCCcccCCeeE-CCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHHHHHh
Confidence 4677889999999999999974 47899999999874 3479999999862 345554443
No 7
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.78 E-value=1.7e-09 Score=81.65 Aligned_cols=68 Identities=19% Similarity=0.409 Sum_probs=54.2
Q ss_pred ccCCCCceeecccccCCCCceeecc-CCcccCccccCCC------CCCCCCCCCCC----cccchHHHhhhccccccCCC
Q psy12278 50 STDLASLFECPVCFDYVLPPIIQCQ-SGHLVCSNCRPKL------SCCPTCRGPLG----NIRNLAMEKVAGTMWFPCRY 118 (300)
Q Consensus 50 ~~~l~~~l~CpiC~~~~~~Pi~qC~-~GH~~C~~C~~~~------~~Cp~Cr~~~~----~~rn~~lEk~~~~l~v~C~~ 118 (300)
.+.+.+.+.||||.+++.+|+.. + |||.||..|+... ..||.||.++. ...|..++++++.++-.-.+
T Consensus 7 ~~~~~~~~~C~IC~~~~~~p~~~-~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~~~~~ 85 (92)
T 3ztg_A 7 DDPIPDELLCLICKDIMTDAVVI-PCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKNETGY 85 (92)
T ss_dssp CCCCCTTTEETTTTEECSSCEEC-TTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHHHHHTC
T ss_pred cccCCcCCCCCCCChhhcCceEC-CCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHHHHHhH
Confidence 45778899999999999999854 5 7999999998642 48999999973 35788888888877654443
No 8
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.76 E-value=1.1e-09 Score=80.10 Aligned_cols=62 Identities=18% Similarity=0.419 Sum_probs=50.0
Q ss_pred cCCCCceeecccccCCCCceeeccCCcccCccccCC-----CCCCCCCCCCCC---cccchHHHhhhcccc
Q psy12278 51 TDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPK-----LSCCPTCRGPLG---NIRNLAMEKVAGTMW 113 (300)
Q Consensus 51 ~~l~~~l~CpiC~~~~~~Pi~qC~~GH~~C~~C~~~-----~~~Cp~Cr~~~~---~~rn~~lEk~~~~l~ 113 (300)
.++.+.+.||||.+++.+|+. .+|||.||..|+.+ ...||.|+.++. ..+|..++++++.+.
T Consensus 3 ~~~~~~~~C~IC~~~~~~Pv~-~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~~l~~~i~~~~ 72 (78)
T 1t1h_A 3 PEFPEYFRCPISLELMKDPVI-VSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWC 72 (78)
T ss_dssp CCCSSSSSCTTTSCCCSSEEE-ETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHH
T ss_pred cCCcccCCCCCccccccCCEE-cCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCHHHHHHHHHHH
Confidence 467788999999999999974 47899999999763 357999999986 256888887776653
No 9
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.75 E-value=4e-09 Score=77.82 Aligned_cols=58 Identities=24% Similarity=0.624 Sum_probs=45.5
Q ss_pred ccCCCCceeecccccCCCCceeeccCCcccCccccCC----------CCCCCCCCCCCCc---ccchHHHhh
Q psy12278 50 STDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPK----------LSCCPTCRGPLGN---IRNLAMEKV 108 (300)
Q Consensus 50 ~~~l~~~l~CpiC~~~~~~Pi~qC~~GH~~C~~C~~~----------~~~Cp~Cr~~~~~---~rn~~lEk~ 108 (300)
.+.+.+.+.||||.+.+..|+. -+|||.||..|+.. ...||.||.++.. .+|..++++
T Consensus 13 ~~~~~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~ 83 (85)
T 2ecv_A 13 LVNVKEEVTCPICLELLTQPLS-LDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHVANI 83 (85)
T ss_dssp CCCCCCCCCCTTTCSCCSSCBC-CSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCCCCCC
T ss_pred HHHccCCCCCCCCCcccCCcee-CCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHHHHHh
Confidence 4577788999999999999974 37799999999864 4689999998762 355555544
No 10
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.69 E-value=5.4e-09 Score=77.13 Aligned_cols=59 Identities=24% Similarity=0.611 Sum_probs=45.9
Q ss_pred ccCCCCceeecccccCCCCceeeccCCcccCccccCC----------CCCCCCCCCCCCc---ccchHHHhhh
Q psy12278 50 STDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPK----------LSCCPTCRGPLGN---IRNLAMEKVA 109 (300)
Q Consensus 50 ~~~l~~~l~CpiC~~~~~~Pi~qC~~GH~~C~~C~~~----------~~~Cp~Cr~~~~~---~rn~~lEk~~ 109 (300)
.+.+.+.+.||||.+.+..|+ ..+|||.||..|+.. ...||.||.++.. .+|..+++++
T Consensus 13 ~~~~~~~~~C~IC~~~~~~p~-~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~v 84 (85)
T 2ecw_A 13 LEMIKEEVTCPICLELLKEPV-SADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVANIV 84 (85)
T ss_dssp CCCCCTTTSCTTTCSCCSSCE-ECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCCSSC
T ss_pred HHhCccCCCCcCCChhhCcce-eCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHHHhh
Confidence 456778899999999999997 446899999999764 3589999999762 4555555443
No 11
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.63 E-value=4.8e-09 Score=82.90 Aligned_cols=65 Identities=23% Similarity=0.470 Sum_probs=51.8
Q ss_pred cccCCCCceeecccccCCCCceeeccCCcccCccccCCC--CCCCCCCCCCC---cccchHHHhhhcccc
Q psy12278 49 TSTDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL--SCCPTCRGPLG---NIRNLAMEKVAGTMW 113 (300)
Q Consensus 49 ~~~~l~~~l~CpiC~~~~~~Pi~qC~~GH~~C~~C~~~~--~~Cp~Cr~~~~---~~rn~~lEk~~~~l~ 113 (300)
..+.+.+.+.||||++++..|+...+|||.||..|+... ..||.||.++. ...|..+.+++..+.
T Consensus 15 ~~~~l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~~~CP~Cr~~~~~~~~~~n~~l~~l~~~~~ 84 (117)
T 1jm7_B 15 ALDRLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGTGCPVCYTPAWIQDLKINRQLDSMIQLCS 84 (117)
T ss_dssp HHHHHHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTTTBCSSSCCBCSCSSCCCCHHHHHHHHHHH
T ss_pred HHHhchhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhcCCCcCCCCcCccccccccHHHHHHHHHHH
Confidence 355667889999999999999865477999999999865 57999999985 246777777766543
No 12
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.63 E-value=1.4e-08 Score=72.98 Aligned_cols=49 Identities=27% Similarity=0.713 Sum_probs=40.8
Q ss_pred cccCCCCceeecccccCCCCceeeccCCcccCccccCCC-------CCCCCCCCCCC
Q psy12278 49 TSTDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL-------SCCPTCRGPLG 98 (300)
Q Consensus 49 ~~~~l~~~l~CpiC~~~~~~Pi~qC~~GH~~C~~C~~~~-------~~Cp~Cr~~~~ 98 (300)
..+.+.+.+.||||++.+..|+.. +|||.||..|+.+. ..||.||.++.
T Consensus 13 ~~~~~~~~~~C~IC~~~~~~~~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 68 (73)
T 2ysl_A 13 FVNKLQEEVICPICLDILQKPVTI-DCGHNFCLKCITQIGETSCGFFKCPLCKTSVR 68 (73)
T ss_dssp CCCCCCCCCBCTTTCSBCSSEEEC-TTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCC
T ss_pred HHHhCccCCEeccCCcccCCeEEc-CCCChhhHHHHHHHHHcCCCCCCCCCCCCcCC
Confidence 346778889999999999999754 78999999997642 37999999875
No 13
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.60 E-value=1.4e-08 Score=73.16 Aligned_cols=51 Identities=22% Similarity=0.592 Sum_probs=42.5
Q ss_pred CcccCCCCceeecccccCCCCceeeccCCcccCccccCC----CCCCCCCCCCCC
Q psy12278 48 GTSTDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPK----LSCCPTCRGPLG 98 (300)
Q Consensus 48 ~~~~~l~~~l~CpiC~~~~~~Pi~qC~~GH~~C~~C~~~----~~~Cp~Cr~~~~ 98 (300)
...+++++.+.||||++.+.+|+..-+|||.||..|+.+ ...||.||.++.
T Consensus 7 ~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 61 (72)
T 2djb_A 7 GNLSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVH 61 (72)
T ss_dssp CCCCCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCC
T ss_pred hhHhhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccC
Confidence 345678889999999999999975446799999999864 368999999875
No 14
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.59 E-value=4.7e-09 Score=87.84 Aligned_cols=65 Identities=23% Similarity=0.516 Sum_probs=50.5
Q ss_pred ccCCCCceeecccccCCCCceeeccCCcccCccccCC-----CCCCCCCCCCCCc----ccchHHHhhhccccc
Q psy12278 50 STDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPK-----LSCCPTCRGPLGN----IRNLAMEKVAGTMWF 114 (300)
Q Consensus 50 ~~~l~~~l~CpiC~~~~~~Pi~qC~~GH~~C~~C~~~-----~~~Cp~Cr~~~~~----~rn~~lEk~~~~l~v 114 (300)
.+.+.+.+.||||.+.+.+|+...+|||.||..|+.+ ...||.||.++.. ..|..+++++..+.-
T Consensus 48 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~~ 121 (165)
T 2ckl_B 48 PRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYP 121 (165)
T ss_dssp --CCHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC-
T ss_pred hhhCCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHHHHHHHc
Confidence 4566778999999999999986557899999999864 3479999999852 467788888777643
No 15
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.58 E-value=1.8e-08 Score=77.35 Aligned_cols=64 Identities=17% Similarity=0.136 Sum_probs=52.0
Q ss_pred ccCCCCceeecccccCCCCceeeccCC-cccCccccCC----CCCCCCCCCCCC---cccchHHHhhhccccc
Q psy12278 50 STDLASLFECPVCFDYVLPPIIQCQSG-HLVCSNCRPK----LSCCPTCRGPLG---NIRNLAMEKVAGTMWF 114 (300)
Q Consensus 50 ~~~l~~~l~CpiC~~~~~~Pi~qC~~G-H~~C~~C~~~----~~~Cp~Cr~~~~---~~rn~~lEk~~~~l~v 114 (300)
..++.+.|.||||+++|++||. -++| |+||..|+.+ ...||.|+.++. .++|..+.+++..+.-
T Consensus 16 ~~~~p~~~~CpI~~~~m~dPV~-~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~ 87 (98)
T 1wgm_A 16 YADACDEFLDPIMSTLMCDPVV-LPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPNTELKEKIQRWLA 87 (98)
T ss_dssp CCSCCTTTBCTTTCSBCSSEEE-CTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSEECHHHHHHHHHHHH
T ss_pred hhcCcHhcCCcCccccccCCeE-CCCCCeEECHHHHHHHHHhCCCCCCCCCCCChhhceEcHHHHHHHHHHHH
Confidence 3567789999999999999985 4679 9999999764 357999999986 3678888888777654
No 16
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.57 E-value=2.7e-09 Score=81.69 Aligned_cols=65 Identities=26% Similarity=0.530 Sum_probs=51.8
Q ss_pred cccCCCCceeecccccCCCCceeeccCCcccCccccCC----CCCCCCCCCCCC---cccchHHHhhhcccc
Q psy12278 49 TSTDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPK----LSCCPTCRGPLG---NIRNLAMEKVAGTMW 113 (300)
Q Consensus 49 ~~~~l~~~l~CpiC~~~~~~Pi~qC~~GH~~C~~C~~~----~~~Cp~Cr~~~~---~~rn~~lEk~~~~l~ 113 (300)
..+.+.+.+.||||.+.+.+|+..-+|||.||..|+.+ ...||.||.++. ..+|..++++++.++
T Consensus 15 ~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~i~~~~ 86 (99)
T 2y43_A 15 VMKTIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPDLKNNRILDELVKSLN 86 (99)
T ss_dssp GGHHHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEECHHHHHHHHHHH
T ss_pred HHHhCCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCChhhCCcCHHHHHHHHHHH
Confidence 34566778999999999999975436799999999764 358999999987 356888888777654
No 17
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.57 E-value=1.2e-08 Score=76.18 Aligned_cols=62 Identities=15% Similarity=0.080 Sum_probs=50.7
Q ss_pred ccCCCCceeecccccCCCCceeeccCCcccCccccCC----CCCCCCCCCCCC---cccchHHHhhhccc
Q psy12278 50 STDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPK----LSCCPTCRGPLG---NIRNLAMEKVAGTM 112 (300)
Q Consensus 50 ~~~l~~~l~CpiC~~~~~~Pi~qC~~GH~~C~~C~~~----~~~Cp~Cr~~~~---~~rn~~lEk~~~~l 112 (300)
...+.+.|.||||+++|++||.. ++||+||..|+.+ ...||.|+.++. .+.|.++.+++..+
T Consensus 8 ~~~~p~~~~CpI~~~~m~dPV~~-~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~l~pn~~L~~~i~~~ 76 (85)
T 2kr4_A 8 YSDAPDEFRDPLMDTLMTDPVRL-PSGTVMDRSIILRHLLNSPTDPFNRQMLTESMLEPVPELKEQIQAW 76 (85)
T ss_dssp CTTCCTTTBCTTTCSBCSSEEEC-TTSCEEEHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHHH
T ss_pred hhcCchheECcccCchhcCCeEC-CCCCEECHHHHHHHHhcCCCCCCCcCCCChHhcchHHHHHHHHHHH
Confidence 45677899999999999999853 5899999999875 368999999986 35788887777655
No 18
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.56 E-value=1.3e-08 Score=74.83 Aligned_cols=49 Identities=27% Similarity=0.727 Sum_probs=39.0
Q ss_pred ccCCCCceeecccccCCC--Cce-eeccCCcccCccccCCC-----CCCCCCCCCCC
Q psy12278 50 STDLASLFECPVCFDYVL--PPI-IQCQSGHLVCSNCRPKL-----SCCPTCRGPLG 98 (300)
Q Consensus 50 ~~~l~~~l~CpiC~~~~~--~Pi-~qC~~GH~~C~~C~~~~-----~~Cp~Cr~~~~ 98 (300)
.+++++++.||||.+++. ++. +.|+|||.||..|+.+. ..||.||.++.
T Consensus 5 ~~~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~ 61 (78)
T 1e4u_A 5 PDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYP 61 (78)
T ss_dssp SCCCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCS
T ss_pred ccccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccC
Confidence 456788899999999985 343 35668999999997643 47999999876
No 19
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.54 E-value=3.8e-08 Score=75.81 Aligned_cols=63 Identities=14% Similarity=0.092 Sum_probs=51.3
Q ss_pred ccCCCCceeecccccCCCCceeeccCCcccCccccCC----CCCCCCCCCCCC---cccchHHHhhhcccc
Q psy12278 50 STDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPK----LSCCPTCRGPLG---NIRNLAMEKVAGTMW 113 (300)
Q Consensus 50 ~~~l~~~l~CpiC~~~~~~Pi~qC~~GH~~C~~C~~~----~~~Cp~Cr~~~~---~~rn~~lEk~~~~l~ 113 (300)
...+.+.|.||||+++|++||.. ++||+||..|+.+ ...||.|+.++. .+.|..+.+++..+.
T Consensus 23 ~~~~p~~~~CpI~~~~m~dPV~~-~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~ 92 (100)
T 2kre_A 23 YSDAPDEFRDPLMDTLMTDPVRL-PSGTIMDRSIILRHLLNSPTDPFNRQTLTESMLEPVPELKEQIQAWM 92 (100)
T ss_dssp CSSCSTTTBCTTTCSBCSSEEEE-TTTEEEEHHHHHHHTTSCSBCSSSCCBCCTTSSEECHHHHHHHHHHH
T ss_pred hccCcHhhCCcCccCcccCCeEC-CCCCEEchHHHHHHHHcCCCCCCCCCCCChhhceECHHHHHHHHHHH
Confidence 45667899999999999999853 5899999999764 358999999986 367888888777654
No 20
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.51 E-value=4.1e-08 Score=72.24 Aligned_cols=48 Identities=25% Similarity=0.627 Sum_probs=40.3
Q ss_pred ccCCCCceeecccccCCCCceeeccCCcccCccccCCC----CCCCCCCCCCC
Q psy12278 50 STDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL----SCCPTCRGPLG 98 (300)
Q Consensus 50 ~~~l~~~l~CpiC~~~~~~Pi~qC~~GH~~C~~C~~~~----~~Cp~Cr~~~~ 98 (300)
.++..+.+.||||++.+..|+. -+|||.||..|+.+. ..||.||.++.
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 9 SEEEEIPFRCFICRQAFQNPVV-TKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp SSCCCCCSBCSSSCSBCCSEEE-CTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred cccCCCCCCCcCCCchhcCeeE-ccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 3566678999999999999974 477999999998653 57999999976
No 21
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.47 E-value=1.8e-08 Score=80.25 Aligned_cols=62 Identities=29% Similarity=0.668 Sum_probs=48.9
Q ss_pred ccCCCCceeecccccCCCCceeeccCCcccCccccCC-----CCCCCCCCCCCCc----ccchHHHhhhccc
Q psy12278 50 STDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPK-----LSCCPTCRGPLGN----IRNLAMEKVAGTM 112 (300)
Q Consensus 50 ~~~l~~~l~CpiC~~~~~~Pi~qC~~GH~~C~~C~~~-----~~~Cp~Cr~~~~~----~rn~~lEk~~~~l 112 (300)
.+.+.+.+.||||.+.+.+|+.. +|||.||..|+.. ...||.||.++.. ..|..+.++++.+
T Consensus 46 ~~~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~ 116 (124)
T 3fl2_A 46 LSKVEETFQCICCQELVFRPITT-VCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQL 116 (124)
T ss_dssp HHHHHHHTBCTTTSSBCSSEEEC-TTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHHHHH
T ss_pred HHhCccCCCCCcCChHHcCcEEe-eCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHHHHH
Confidence 34556789999999999999753 7899999999863 2489999999863 4677777777554
No 22
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.47 E-value=1.4e-08 Score=79.00 Aligned_cols=64 Identities=17% Similarity=0.446 Sum_probs=50.1
Q ss_pred cccCCCCceeecccccCCCCceeeccCCcccCccccCCC----CCCCCCCCCCCc-------ccchHHHhhhccc
Q psy12278 49 TSTDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL----SCCPTCRGPLGN-------IRNLAMEKVAGTM 112 (300)
Q Consensus 49 ~~~~l~~~l~CpiC~~~~~~Pi~qC~~GH~~C~~C~~~~----~~Cp~Cr~~~~~-------~rn~~lEk~~~~l 112 (300)
..+++.+.+.||||.+.+.+|+..-+|||.||..|+... ..||.||.++.. ..|..++.+++.+
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~ 82 (108)
T 2ckl_A 8 KITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKL 82 (108)
T ss_dssp EHHHHGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSSCGGGGEEECHHHHHHHHHH
T ss_pred chhccCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhCCcCcCCCccccccCcccccCcCHHHHHHHHHH
Confidence 345677899999999999999854478999999997642 589999998763 3566777766654
No 23
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.47 E-value=5.4e-08 Score=70.42 Aligned_cols=49 Identities=20% Similarity=0.528 Sum_probs=40.4
Q ss_pred cccCCCCceeecccccCCCCceeecc-CCcccCccccCCC------CCCCCCCCCCC
Q psy12278 49 TSTDLASLFECPVCFDYVLPPIIQCQ-SGHLVCSNCRPKL------SCCPTCRGPLG 98 (300)
Q Consensus 49 ~~~~l~~~l~CpiC~~~~~~Pi~qC~-~GH~~C~~C~~~~------~~Cp~Cr~~~~ 98 (300)
..+++.+.+.||||.+.+.+|+. -+ |||.||..|+... ..||.||.++.
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~p~~-~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 8 EDDPIPDELLCLICKDIMTDAVV-IPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp CCCCSCGGGSCSSSCCCCTTCEE-CSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred ccccCCCCCCCcCCChHHhCCeE-cCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 35677889999999999999975 35 7999999998642 48999999753
No 24
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.45 E-value=1.3e-07 Score=64.79 Aligned_cols=44 Identities=25% Similarity=0.573 Sum_probs=37.2
Q ss_pred CCceeecccccCCCCceeeccCCcccCccccCCC-CCCCCCCCCCC
Q psy12278 54 ASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL-SCCPTCRGPLG 98 (300)
Q Consensus 54 ~~~l~CpiC~~~~~~Pi~qC~~GH~~C~~C~~~~-~~Cp~Cr~~~~ 98 (300)
.+.+.|+||.+.+..|+. -+|||.||..|+... ..||.||.++.
T Consensus 4 ~~~~~C~IC~~~~~~p~~-l~CgH~fC~~Ci~~~~~~CP~Cr~~~~ 48 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKL-LPCLHTLCSGCLEASGMQCPICQAPWP 48 (56)
T ss_dssp CCCSSCSSSCSSCBCCSC-STTSCCSBTTTCSSSSSSCSSCCSSSS
T ss_pred ccCCCceEeCCccCCeEE-cCCCCcccHHHHccCCCCCCcCCcEee
Confidence 467889999999999974 357999999998765 58999999875
No 25
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.43 E-value=1.3e-07 Score=66.67 Aligned_cols=48 Identities=19% Similarity=0.552 Sum_probs=40.2
Q ss_pred ccCCCCceeecccccCCCCceeeccCCcccCccccCC-----CCCCCCCCCCCC
Q psy12278 50 STDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPK-----LSCCPTCRGPLG 98 (300)
Q Consensus 50 ~~~l~~~l~CpiC~~~~~~Pi~qC~~GH~~C~~C~~~-----~~~Cp~Cr~~~~ 98 (300)
.+.+.+.+.||||.+.+..|+. -+|||.||..|+.+ ...||.||.++.
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (66)
T 2ecy_A 9 VKTVEDKYKCEKCHLVLCSPKQ-TECGHRFCESCMAALLSSSSPKCTACQESIV 61 (66)
T ss_dssp CCSCCCCEECTTTCCEESSCCC-CSSSCCCCHHHHHHHHTTSSCCCTTTCCCCC
T ss_pred hhcCCcCCCCCCCChHhcCeeE-CCCCCHHHHHHHHHHHHhCcCCCCCCCcCCC
Confidence 4567788999999999999974 47899999999763 257999999875
No 26
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.41 E-value=1.6e-08 Score=77.76 Aligned_cols=61 Identities=25% Similarity=0.566 Sum_probs=46.9
Q ss_pred ccCCCCceeecccccCCCCceeeccCCcccCccccCCC-----CCCCCCCCCCCc---ccchHHHhhhc
Q psy12278 50 STDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL-----SCCPTCRGPLGN---IRNLAMEKVAG 110 (300)
Q Consensus 50 ~~~l~~~l~CpiC~~~~~~Pi~qC~~GH~~C~~C~~~~-----~~Cp~Cr~~~~~---~rn~~lEk~~~ 110 (300)
...+.+.+.||||++.+..|+..-+|||.||..|+.+. ..||.||.++.. .++..++.+..
T Consensus 16 ~~~l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~i~~ 84 (100)
T 3lrq_A 16 VESIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEEVTQ 84 (100)
T ss_dssp HHHHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTTHHHHHH
T ss_pred cccCCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhHHHHHHHH
Confidence 45677889999999999999752468999999998742 589999999862 45555555443
No 27
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.41 E-value=6.9e-08 Score=75.77 Aligned_cols=47 Identities=26% Similarity=0.728 Sum_probs=39.7
Q ss_pred cCCCCceeecccccCCCCceeeccCCcccCccccCCC-----CCCCCCCCCCC
Q psy12278 51 TDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL-----SCCPTCRGPLG 98 (300)
Q Consensus 51 ~~l~~~l~CpiC~~~~~~Pi~qC~~GH~~C~~C~~~~-----~~Cp~Cr~~~~ 98 (300)
..+.+.+.||||.+.+..|+.. +|||.||..|+.+. ..||.||.++.
T Consensus 10 ~~~~~~~~C~iC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 10 IPSLSECQCGICMEILVEPVTL-PCNHTLCKPCFQSTVEKASLCCPFCRRRVS 61 (115)
T ss_dssp CCCHHHHBCTTTCSBCSSCEEC-TTSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred cCCCCCCCCccCCcccCceeEc-CCCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence 4556789999999999999854 78999999998754 37999999875
No 28
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.41 E-value=1e-07 Score=70.80 Aligned_cols=48 Identities=31% Similarity=0.781 Sum_probs=39.7
Q ss_pred ccCCCCceeecccccCCCC----ceeeccCCcccCccccCCC-------CCCCCCCCCCC
Q psy12278 50 STDLASLFECPVCFDYVLP----PIIQCQSGHLVCSNCRPKL-------SCCPTCRGPLG 98 (300)
Q Consensus 50 ~~~l~~~l~CpiC~~~~~~----Pi~qC~~GH~~C~~C~~~~-------~~Cp~Cr~~~~ 98 (300)
.+.+.+.+.||||++.+.. |+. -+|||.||..|+.+. ..||.||.++.
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~-~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 67 (88)
T 2ct2_A 9 LDALREVLECPICMESFTEEQLRPKL-LHCGHTICRQCLEKLLASSINGVRCPFCSKITR 67 (88)
T ss_dssp CCCCCSCCBCTTTCCBCCTTSSCEEE-CSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBC
T ss_pred hhhccCCCCCccCCccccccCCCeEE-CCCCChhhHHHHHHHHHcCCCCcCCCCCCCccc
Confidence 4577788999999999998 864 367999999998742 58999999864
No 29
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.40 E-value=1.2e-07 Score=66.26 Aligned_cols=45 Identities=29% Similarity=0.748 Sum_probs=36.6
Q ss_pred CcccCCCCceeecccccCCCCceeeccCCcccCccccCCC-------CCCCCC
Q psy12278 48 GTSTDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL-------SCCPTC 93 (300)
Q Consensus 48 ~~~~~l~~~l~CpiC~~~~~~Pi~qC~~GH~~C~~C~~~~-------~~Cp~C 93 (300)
...+.+.+.+.||||++.+..|+.. +|||.||..|+.+. ..||.|
T Consensus 12 ~~~~~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 12 QFVNKLQEEVICPICLDILQKPVTI-DCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCCCCBCTTTCSBCSSCEEC-TTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred HHHHhCccCCCCCcCCchhCCeEEe-CCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 3356778899999999999999754 78999999997632 378887
No 30
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.39 E-value=2e-08 Score=73.01 Aligned_cols=49 Identities=24% Similarity=0.583 Sum_probs=41.9
Q ss_pred ccCCCCceeecccccCCCCceeeccCCcc-cCccccCCCCCCCCCCCCCCc
Q psy12278 50 STDLASLFECPVCFDYVLPPIIQCQSGHL-VCSNCRPKLSCCPTCRGPLGN 99 (300)
Q Consensus 50 ~~~l~~~l~CpiC~~~~~~Pi~qC~~GH~-~C~~C~~~~~~Cp~Cr~~~~~ 99 (300)
.+++.+.+.|+||++.+.+|++. +|||. ||..|..+...||.||.++..
T Consensus 19 ~~~~~~~~~C~IC~~~~~~~~~~-pCgH~~~C~~C~~~~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 19 LRRLQEEKLCKICMDRNIAIVFV-PCGHLVTCKQCAEAVDKCPMCYTVITF 68 (75)
T ss_dssp HHHHHHHHSCSSSCSSCCCBCCS-SSCCCCBCHHHHHHCSBCTTTCCBCCC
T ss_pred HHcCCCCCCCCcCCCCCCCEEEe-cCCCHHHHHHHhhCCCCCccCCceecC
Confidence 45566788999999999999853 67999 999999888899999998763
No 31
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.38 E-value=1.1e-07 Score=68.08 Aligned_cols=46 Identities=22% Similarity=0.571 Sum_probs=37.8
Q ss_pred CCCCceeecccccCCCCceeeccCCcccCccccCCC----CCCCCCCCCCC
Q psy12278 52 DLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL----SCCPTCRGPLG 98 (300)
Q Consensus 52 ~l~~~l~CpiC~~~~~~Pi~qC~~GH~~C~~C~~~~----~~Cp~Cr~~~~ 98 (300)
...+.+.|+||++.+..|+.. +|||.||..|+.+. ..||.||.++.
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~-~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (71)
T 2d8t_A 11 PSLTVPECAICLQTCVHPVSL-PCKHVFCYLCVKGASWLGKRCALCRQEIP 60 (71)
T ss_dssp SSSSCCBCSSSSSBCSSEEEE-TTTEEEEHHHHHHCTTCSSBCSSSCCBCC
T ss_pred cCCCCCCCccCCcccCCCEEc-cCCCHHHHHHHHHHHHCCCcCcCcCchhC
Confidence 344678999999999999743 67999999997753 57999999875
No 32
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.37 E-value=2.3e-08 Score=82.58 Aligned_cols=60 Identities=30% Similarity=0.681 Sum_probs=48.4
Q ss_pred CCCceeecccccCCCCceeeccCCcccCccccCCC-----CCCCCCCCCCCc----ccchHHHhhhcccc
Q psy12278 53 LASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL-----SCCPTCRGPLGN----IRNLAMEKVAGTMW 113 (300)
Q Consensus 53 l~~~l~CpiC~~~~~~Pi~qC~~GH~~C~~C~~~~-----~~Cp~Cr~~~~~----~rn~~lEk~~~~l~ 113 (300)
+.+.+.||||.+++.+|+. -+|||.||..|+... ..||.||.++.. ..|..++++++.+.
T Consensus 75 l~~~~~C~IC~~~~~~pv~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~ 143 (150)
T 1z6u_A 75 LEQSFMCVCCQELVYQPVT-TECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDLFF 143 (150)
T ss_dssp HHHHTBCTTTSSBCSSEEE-CTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHS
T ss_pred CccCCEeecCChhhcCCEE-cCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHHHHh
Confidence 4567899999999999975 478999999998642 379999999863 47888888777654
No 33
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.34 E-value=3.3e-08 Score=80.33 Aligned_cols=46 Identities=26% Similarity=0.670 Sum_probs=38.4
Q ss_pred CCCCceeecccccCCCCceeeccCCcccCccccCC----CCCCCCCCCCCC
Q psy12278 52 DLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPK----LSCCPTCRGPLG 98 (300)
Q Consensus 52 ~l~~~l~CpiC~~~~~~Pi~qC~~GH~~C~~C~~~----~~~Cp~Cr~~~~ 98 (300)
.+++++.||||.+.+.+|+. .+|||.||..|+.. ...||.||.++.
T Consensus 49 ~~~~~~~C~iC~~~~~~~~~-~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 98 (138)
T 4ayc_A 49 VLENELQCIICSEYFIEAVT-LNCAHSFCSYCINEWMKRKIECPICRKDIK 98 (138)
T ss_dssp HHHHHSBCTTTCSBCSSEEE-ETTSCEEEHHHHHHHTTTCSBCTTTCCBCC
T ss_pred hccccCCCcccCcccCCceE-CCCCCCccHHHHHHHHHcCCcCCCCCCcCC
Confidence 34567899999999999974 47899999999764 357999999986
No 34
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.34 E-value=8e-08 Score=73.01 Aligned_cols=62 Identities=19% Similarity=0.386 Sum_probs=48.6
Q ss_pred CCCCceeecccccCCCCceeeccCCcccCccccCCC----------CCCCC--CCCC-CC---cccchHHHhhhcccc
Q psy12278 52 DLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL----------SCCPT--CRGP-LG---NIRNLAMEKVAGTMW 113 (300)
Q Consensus 52 ~l~~~l~CpiC~~~~~~Pi~qC~~GH~~C~~C~~~~----------~~Cp~--Cr~~-~~---~~rn~~lEk~~~~l~ 113 (300)
...+.|.||||+++|.+||..-.|||+||..|+... ..||. |+.. +. .++|.+|.+++..++
T Consensus 3 ~~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~~ 80 (94)
T 2yu4_A 3 SGSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHN 80 (94)
T ss_dssp SCSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHHH
T ss_pred CCCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHHH
Confidence 456789999999999999854247999999997632 38999 8865 44 367888888887764
No 35
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.33 E-value=6.1e-08 Score=70.32 Aligned_cols=48 Identities=25% Similarity=0.616 Sum_probs=42.1
Q ss_pred ccCCCCceeecccccCCCCceeeccCCcc-cCccccCCCCCCCCCCCCCC
Q psy12278 50 STDLASLFECPVCFDYVLPPIIQCQSGHL-VCSNCRPKLSCCPTCRGPLG 98 (300)
Q Consensus 50 ~~~l~~~l~CpiC~~~~~~Pi~qC~~GH~-~C~~C~~~~~~Cp~Cr~~~~ 98 (300)
.+.+.+.+.|+||++.+.+|++. +|||. ||..|......||.||.++.
T Consensus 18 ~~~~~~~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~~~CP~Cr~~i~ 66 (74)
T 4ic3_A 18 LRRLQEEKLCKICMDRNIAIVFV-PCGHLVTCKQCAEAVDKCPMCYTVIT 66 (74)
T ss_dssp HHHHHHHTBCTTTSSSBCCEEEE-TTCCBCCCHHHHTTCSBCTTTCCBCS
T ss_pred HhcCccCCCCCCCCCCCCCEEEc-CCCChhHHHHhhhcCccCCCcCcCcc
Confidence 44566788999999999999864 77999 99999998899999999875
No 36
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.28 E-value=1.1e-07 Score=67.18 Aligned_cols=49 Identities=29% Similarity=0.747 Sum_probs=38.9
Q ss_pred ccCCCCceeecccccCCCCce------eeccCCcccCccccCCC----CCCCCCCCCCC
Q psy12278 50 STDLASLFECPVCFDYVLPPI------IQCQSGHLVCSNCRPKL----SCCPTCRGPLG 98 (300)
Q Consensus 50 ~~~l~~~l~CpiC~~~~~~Pi------~qC~~GH~~C~~C~~~~----~~Cp~Cr~~~~ 98 (300)
.+.+.+.+.|+||++.+..|. ..-+|||.||..|+.+. ..||.||.++.
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 9 GLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 67 (69)
T ss_dssp CCCTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred ccCCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccC
Confidence 456677899999999998771 34467999999998753 58999999874
No 37
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.25 E-value=6.3e-07 Score=63.93 Aligned_cols=47 Identities=21% Similarity=0.513 Sum_probs=39.8
Q ss_pred CCCCceeecccccCCCCceeeccCCcc-cCccccCCCCCCCCCCCCCCc
Q psy12278 52 DLASLFECPVCFDYVLPPIIQCQSGHL-VCSNCRPKLSCCPTCRGPLGN 99 (300)
Q Consensus 52 ~l~~~l~CpiC~~~~~~Pi~qC~~GH~-~C~~C~~~~~~Cp~Cr~~~~~ 99 (300)
...+...|+||++...++++. +|||. +|..|......||.||.++..
T Consensus 11 ~~~~~~~C~IC~~~~~~~v~~-pCgH~~~C~~C~~~~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 11 SEENSKDCVVCQNGTVNWVLL-PCRHTCLCDGCVKYFQQCPMCRQFVQE 58 (68)
T ss_dssp SCCCSSCCSSSSSSCCCCEET-TTTBCCSCTTHHHHCSSCTTTCCCCCC
T ss_pred cCCCCCCCCCcCcCCCCEEEE-CCCChhhhHHHHhcCCCCCCCCcchhc
Confidence 334568899999999999753 67999 999999988899999998763
No 38
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.25 E-value=3.6e-07 Score=81.85 Aligned_cols=62 Identities=26% Similarity=0.329 Sum_probs=50.3
Q ss_pred cCCCCceeecccccCCCCceeeccCCcccCccccCCC-----CCCCCCCCCCC---cccchHHHhhhcccc
Q psy12278 51 TDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL-----SCCPTCRGPLG---NIRNLAMEKVAGTMW 113 (300)
Q Consensus 51 ~~l~~~l~CpiC~~~~~~Pi~qC~~GH~~C~~C~~~~-----~~Cp~Cr~~~~---~~rn~~lEk~~~~l~ 113 (300)
.++.+.|.||||.++|.+||. -+|||+||..|+.+. ..||.|+.++. .++|..+.++++.+.
T Consensus 203 ~~~~~~~~c~i~~~~~~dPv~-~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~~l~~~i~~~~ 272 (281)
T 2c2l_A 203 RDIPDYLCGKISFELMREPCI-TPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFI 272 (281)
T ss_dssp CCCCSTTBCTTTCSBCSSEEE-CSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHH
T ss_pred CCCCcccCCcCcCCHhcCCeE-CCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcccHHHHHHHHHHH
Confidence 355678999999999999984 457999999998742 34999999986 367888888887664
No 39
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.24 E-value=5.8e-08 Score=75.56 Aligned_cols=47 Identities=30% Similarity=0.890 Sum_probs=38.5
Q ss_pred cCCCCceeecccccCCCCceeeccCCcccCccccCCC-------CCCCCCCCCCC
Q psy12278 51 TDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL-------SCCPTCRGPLG 98 (300)
Q Consensus 51 ~~l~~~l~CpiC~~~~~~Pi~qC~~GH~~C~~C~~~~-------~~Cp~Cr~~~~ 98 (300)
+.+.+.+.||||++.+..|+. -+|||.||..|+... ..||.||.++.
T Consensus 16 ~~~~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 69 (112)
T 1jm7_A 16 NAMQKILECPICLELIKEPVS-TKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDIT 69 (112)
T ss_dssp HHHHHHTSCSSSCCCCSSCCB-CTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCC
T ss_pred HhccCCCCCcccChhhcCeEE-CCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCC
Confidence 345567899999999999974 478999999997642 37999999876
No 40
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.21 E-value=3.8e-07 Score=62.27 Aligned_cols=44 Identities=32% Similarity=0.828 Sum_probs=35.4
Q ss_pred cccCCCCceeecccccCCCCceeeccCCcccCccccCCC-------CCCCCC
Q psy12278 49 TSTDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL-------SCCPTC 93 (300)
Q Consensus 49 ~~~~l~~~l~CpiC~~~~~~Pi~qC~~GH~~C~~C~~~~-------~~Cp~C 93 (300)
..+.+.+.+.|+||++.+..|+. -+|||.||..|+.+. ..||.|
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 8 ALENLQVEASCSVCLEYLKEPVI-IECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CSSCSCCCCBCSSSCCBCSSCCC-CSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred HhhccccCCCCccCCcccCccEe-CCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 34567788999999999999974 467999999997532 468877
No 41
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.16 E-value=3.6e-07 Score=77.51 Aligned_cols=63 Identities=24% Similarity=0.309 Sum_probs=51.4
Q ss_pred ccCCCCceeecccccCCCCceeeccCCcccCccccCCC-----CCCCCCCCCCC---cccchHHHhhhcccc
Q psy12278 50 STDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL-----SCCPTCRGPLG---NIRNLAMEKVAGTMW 113 (300)
Q Consensus 50 ~~~l~~~l~CpiC~~~~~~Pi~qC~~GH~~C~~C~~~~-----~~Cp~Cr~~~~---~~rn~~lEk~~~~l~ 113 (300)
...+.+.|.||||.++|.+||.. ++||+||..|+... ..||.|+.++. .++|.++.+++..+.
T Consensus 100 ~~~ip~~f~CPI~~elm~DPV~~-~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~~Lk~~Ie~~~ 170 (179)
T 2f42_A 100 KREIPDYLCGKISFELMREPCIT-PSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDAFI 170 (179)
T ss_dssp CCCCCGGGBCTTTCSBCSSEEEC-TTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECHHHHHHHHHHH
T ss_pred ccCCcHhhcccCccccCCCCeEC-CCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcchHHHHHHHHHHH
Confidence 34667899999999999999854 78999999997642 25999999986 367888888877664
No 42
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.16 E-value=1.1e-06 Score=63.73 Aligned_cols=49 Identities=31% Similarity=0.545 Sum_probs=38.7
Q ss_pred ccCCCCceeecccccCCCCce--eeccCCcccCccccCC----CCCCCCCCCCCC
Q psy12278 50 STDLASLFECPVCFDYVLPPI--IQCQSGHLVCSNCRPK----LSCCPTCRGPLG 98 (300)
Q Consensus 50 ~~~l~~~l~CpiC~~~~~~Pi--~qC~~GH~~C~~C~~~----~~~Cp~Cr~~~~ 98 (300)
.+...+.+.|+||++.+..+. ..-+|||.||..|+.+ ...||.||.++.
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 63 (78)
T 2ect_A 9 EEHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLT 63 (78)
T ss_dssp CTTSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCC
T ss_pred cccCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccC
Confidence 445667889999999998663 3336799999999864 368999999875
No 43
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.13 E-value=1.8e-07 Score=66.61 Aligned_cols=47 Identities=30% Similarity=0.791 Sum_probs=37.8
Q ss_pred CCCCceeecccccCCCCce------eeccCCcccCccccCC----CCCCCCCCCCCC
Q psy12278 52 DLASLFECPVCFDYVLPPI------IQCQSGHLVCSNCRPK----LSCCPTCRGPLG 98 (300)
Q Consensus 52 ~l~~~l~CpiC~~~~~~Pi------~qC~~GH~~C~~C~~~----~~~Cp~Cr~~~~ 98 (300)
...+.+.|+||++.+..|+ ..-+|||.||..|+.+ ...||.||.++.
T Consensus 6 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 62 (71)
T 3ng2_A 6 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 62 (71)
T ss_dssp CCTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CCCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccC
Confidence 3456789999999998872 3456799999999864 368999999875
No 44
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.10 E-value=3.8e-07 Score=67.03 Aligned_cols=48 Identities=27% Similarity=0.679 Sum_probs=41.5
Q ss_pred ccCCCCceeecccccCCCCceeeccCCcc-cCccccCCCCCCCCCCCCCC
Q psy12278 50 STDLASLFECPVCFDYVLPPIIQCQSGHL-VCSNCRPKLSCCPTCRGPLG 98 (300)
Q Consensus 50 ~~~l~~~l~CpiC~~~~~~Pi~qC~~GH~-~C~~C~~~~~~Cp~Cr~~~~ 98 (300)
.+++.+...|+||.+.+.+|++. +|||. +|..|......||.||.++.
T Consensus 12 ~~~l~~~~~C~IC~~~~~~~v~~-pCgH~~~C~~C~~~~~~CP~Cr~~i~ 60 (79)
T 2yho_A 12 LRKLKEAMLCMVCCEEEINSTFC-PCGHTVCCESCAAQLQSCPVCRSRVE 60 (79)
T ss_dssp HHHHHHHTBCTTTSSSBCCEEEE-TTCBCCBCHHHHTTCSBCTTTCCBCC
T ss_pred HHcCCCCCEeEEeCcccCcEEEE-CCCCHHHHHHHHHhcCcCCCCCchhh
Confidence 34556678899999999999865 67999 99999998889999999876
No 45
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.08 E-value=3.3e-07 Score=64.33 Aligned_cols=44 Identities=32% Similarity=0.680 Sum_probs=35.2
Q ss_pred Cceeeccccc-CCCCce---eeccCCcccCccccCCC-----CCCCCCCCCCC
Q psy12278 55 SLFECPVCFD-YVLPPI---IQCQSGHLVCSNCRPKL-----SCCPTCRGPLG 98 (300)
Q Consensus 55 ~~l~CpiC~~-~~~~Pi---~qC~~GH~~C~~C~~~~-----~~Cp~Cr~~~~ 98 (300)
+++.||||++ .+..|+ +.-+|||.||..|+.+. ..||.||.++.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 54 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLR 54 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCS
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccc
Confidence 4678999999 888884 22357999999997653 47999999875
No 46
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.06 E-value=2e-06 Score=58.04 Aligned_cols=45 Identities=27% Similarity=0.518 Sum_probs=34.8
Q ss_pred CCCceeecccccCCCC---ceeeccCCcccCccccCC----CCCCCCCCCCC
Q psy12278 53 LASLFECPVCFDYVLP---PIIQCQSGHLVCSNCRPK----LSCCPTCRGPL 97 (300)
Q Consensus 53 l~~~l~CpiC~~~~~~---Pi~qC~~GH~~C~~C~~~----~~~Cp~Cr~~~ 97 (300)
+++...|+||++.+.. ++..-.|||.||..|+.+ ...||.||.++
T Consensus 2 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~ 53 (55)
T 1iym_A 2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTV 53 (55)
T ss_dssp CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCS
T ss_pred CCCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEe
Confidence 4567899999999977 443223799999999764 35899999876
No 47
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.06 E-value=1.4e-06 Score=62.62 Aligned_cols=50 Identities=26% Similarity=0.481 Sum_probs=39.5
Q ss_pred ccCCCCceeecccccCCCCce--eeccCCcccCccccCC----CCCCCCCCCCCCc
Q psy12278 50 STDLASLFECPVCFDYVLPPI--IQCQSGHLVCSNCRPK----LSCCPTCRGPLGN 99 (300)
Q Consensus 50 ~~~l~~~l~CpiC~~~~~~Pi--~qC~~GH~~C~~C~~~----~~~Cp~Cr~~~~~ 99 (300)
..++.+...|+||++.+..+. ...+|||.||..|+.+ ...||.||.++..
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 9 VKELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQ 64 (74)
T ss_dssp CCCCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSS
T ss_pred cccCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCccccc
Confidence 456677889999999998764 3346799999999874 3589999998753
No 48
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.04 E-value=1.5e-06 Score=61.34 Aligned_cols=44 Identities=23% Similarity=0.568 Sum_probs=36.7
Q ss_pred CceeecccccCCCCceeeccCCcccCccccCC----CCCCCCCCCCCC
Q psy12278 55 SLFECPVCFDYVLPPIIQCQSGHLVCSNCRPK----LSCCPTCRGPLG 98 (300)
Q Consensus 55 ~~l~CpiC~~~~~~Pi~qC~~GH~~C~~C~~~----~~~Cp~Cr~~~~ 98 (300)
+...|+||.+.+.+|+..-+|||.||..|+.+ ...||.||.++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 51 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVE 51 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhH
Confidence 45689999999999855556799999999864 368999999876
No 49
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.02 E-value=6.8e-07 Score=63.58 Aligned_cols=47 Identities=28% Similarity=0.571 Sum_probs=38.2
Q ss_pred ccCCCCceeecccccCCCCceeeccCCcccCccccCCC----CCCCCCCCCCC
Q psy12278 50 STDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL----SCCPTCRGPLG 98 (300)
Q Consensus 50 ~~~l~~~l~CpiC~~~~~~Pi~qC~~GH~~C~~C~~~~----~~Cp~Cr~~~~ 98 (300)
.+++.+.+.|+||++.+.+ + .-+|||.||..|+.+. ..||.||.++.
T Consensus 9 ~~~~~~~~~C~IC~~~~~~-~-~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 59 (70)
T 2ecn_A 9 VKQLTDEEECCICMDGRAD-L-ILPCAHSFCQKCIDKWSDRHRNCPICRLQMT 59 (70)
T ss_dssp CCCCCCCCCCSSSCCSCCS-E-EETTTEEECHHHHHHSSCCCSSCHHHHHCTT
T ss_pred hhcCCCCCCCeeCCcCccC-c-ccCCCCcccHHHHHHHHHCcCcCCCcCCccc
Confidence 4566778999999999988 4 3467999999998643 57999998875
No 50
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=97.97 E-value=4.4e-07 Score=63.09 Aligned_cols=44 Identities=32% Similarity=0.893 Sum_probs=35.7
Q ss_pred CceeecccccCCCCce------eeccCCcccCccccCC----CCCCCCCCCCCC
Q psy12278 55 SLFECPVCFDYVLPPI------IQCQSGHLVCSNCRPK----LSCCPTCRGPLG 98 (300)
Q Consensus 55 ~~l~CpiC~~~~~~Pi------~qC~~GH~~C~~C~~~----~~~Cp~Cr~~~~ 98 (300)
+.+.||||.+.+..|. ..-+|||.||..|+.+ ...||.||.++.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 55 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 55 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCC
Confidence 4678999999998762 3446799999999874 358999999875
No 51
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=97.92 E-value=3.1e-06 Score=59.87 Aligned_cols=48 Identities=21% Similarity=0.453 Sum_probs=36.6
Q ss_pred cCCCCceeecccccCCCC--ceeeccCCcccCccccCC----CCCCCCCCCCCC
Q psy12278 51 TDLASLFECPVCFDYVLP--PIIQCQSGHLVCSNCRPK----LSCCPTCRGPLG 98 (300)
Q Consensus 51 ~~l~~~l~CpiC~~~~~~--Pi~qC~~GH~~C~~C~~~----~~~Cp~Cr~~~~ 98 (300)
++..+...|+||++.+.. ++..-+|||.||..|+.+ ...||.||.++.
T Consensus 9 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 62 (69)
T 2kiz_A 9 TEEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIE 62 (69)
T ss_dssp CSTTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSC
T ss_pred CcCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCcccc
Confidence 344567889999998853 334456799999999874 357999999875
No 52
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=97.84 E-value=5.1e-06 Score=55.87 Aligned_cols=44 Identities=27% Similarity=0.696 Sum_probs=34.0
Q ss_pred CceeecccccCCCC---ceeeccCCcccCccccCCC----CCCCCCCCCCC
Q psy12278 55 SLFECPVCFDYVLP---PIIQCQSGHLVCSNCRPKL----SCCPTCRGPLG 98 (300)
Q Consensus 55 ~~l~CpiC~~~~~~---Pi~qC~~GH~~C~~C~~~~----~~Cp~Cr~~~~ 98 (300)
+...|+||++.+.+ ++..-+|||.||..|+.+. ..||.||.++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 45789999999865 2333457999999998753 68999998764
No 53
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.83 E-value=5.1e-06 Score=59.83 Aligned_cols=47 Identities=23% Similarity=0.422 Sum_probs=36.8
Q ss_pred CCCCceeecccccCCCCc--eeeccCCcccCccccCC----CCCCCCCCCCCC
Q psy12278 52 DLASLFECPVCFDYVLPP--IIQCQSGHLVCSNCRPK----LSCCPTCRGPLG 98 (300)
Q Consensus 52 ~l~~~l~CpiC~~~~~~P--i~qC~~GH~~C~~C~~~----~~~Cp~Cr~~~~ 98 (300)
...+...|+||++.+..+ +..-+|||.||..|+.+ ...||.||.++.
T Consensus 19 ~~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~ 71 (75)
T 1x4j_A 19 HQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSG 71 (75)
T ss_dssp CSSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCC
T ss_pred ccCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCC
Confidence 344668999999999876 33346799999999874 368999999875
No 54
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=97.82 E-value=4e-06 Score=78.17 Aligned_cols=48 Identities=38% Similarity=0.823 Sum_probs=42.0
Q ss_pred ccCCCCceeecccccCCCCceeeccCCcc-cCccccCCCCCCCCCCCCCC
Q psy12278 50 STDLASLFECPVCFDYVLPPIIQCQSGHL-VCSNCRPKLSCCPTCRGPLG 98 (300)
Q Consensus 50 ~~~l~~~l~CpiC~~~~~~Pi~qC~~GH~-~C~~C~~~~~~Cp~Cr~~~~ 98 (300)
.+.+.+.+.|+||.+.+..|++. +|||. ||..|......||.||.++.
T Consensus 289 ~~~l~~~~~C~IC~~~~~~~v~l-pCgH~~fC~~C~~~~~~CP~CR~~i~ 337 (345)
T 3t6p_A 289 LRRLQEERTCKVCMDKEVSVVFI-PCGHLVVCQECAPSLRKCPICRGIIK 337 (345)
T ss_dssp HHHHHTTCBCTTTSSSBCCEEEE-TTCCEEECTTTGGGCSBCTTTCCBCC
T ss_pred HHhCcCCCCCCccCCcCCceEEc-CCCChhHhHHHHhcCCcCCCCCCCcc
Confidence 34556789999999999999865 77999 99999999899999999875
No 55
>2yre_A F-box only protein 30; zinc binding, E3 ubiquitin ligase, SCF, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.74 E-value=9.4e-06 Score=61.73 Aligned_cols=80 Identities=21% Similarity=0.372 Sum_probs=60.1
Q ss_pred CcccCccccCCCCCCCCCCCCCCcccchHHHhhhccccccCCCCCCCceeEeccCChHHHHHhCCCCCccCCCCCCCCcc
Q psy12278 76 GHLVCSNCRPKLSCCPTCRGPLGNIRNLAMEKVAGTMWFPCRYQMNGCGISLLHTEKPEHEDTCEHRPYLCPCPGASCKW 155 (300)
Q Consensus 76 GH~~C~~C~~~~~~Cp~Cr~~~~~~rn~~lEk~~~~l~v~C~~~~~GC~~~~~~~~~~~He~~C~f~~~~Cp~~~~~C~~ 155 (300)
.|.-|..|+.. .|..+.. .-..-..+.||+ .|...+...++++|...|+...+.|++...||.+
T Consensus 13 ~h~HC~~C~~~-----~C~~~~~--------~~~~C~~i~CP~---~Cga~i~rckL~EH~~~CP~a~v~C~~~~yGCp~ 76 (100)
T 2yre_A 13 QHSHCVNCVSR-----RCMTRPE--------PGISCDLIGCPL---VCGAVFHSCKADEHRLLCPFERVPCLNSDFGCPF 76 (100)
T ss_dssp CCTTGGGCCCT-----TCCCCCC--------TTTCCCEEECTT---CCSCEEEHHHHHHHHHHCSSSEEECTTTTTTCCC
T ss_pred cchhHhhhccc-----ccCCCCC--------CCCeeeeeeCCc---ccCCeeehhhHHHHHhhcccccccccccCcCCce
Confidence 47778888753 2433221 112234788996 4988999999999999999999999999889999
Q ss_pred cccHHHHHHHhhhccC
Q psy12278 156 GGALDQVMAHLNQSHK 171 (300)
Q Consensus 156 ~g~~~~l~~Hl~~~H~ 171 (300)
++.+.+|.+|++.+=-
T Consensus 77 ~~~R~~L~~He~~CPa 92 (100)
T 2yre_A 77 TMARNKVAEHLEMCPA 92 (100)
T ss_dssp EEESSTHHHHHHTCGG
T ss_pred eecHHHHHHHHhhCCc
Confidence 9999999999887643
No 56
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=97.74 E-value=3e-06 Score=75.64 Aligned_cols=61 Identities=18% Similarity=0.311 Sum_probs=46.6
Q ss_pred CCCCceeecccccCCCCceeeccCCcccCccccCCC------CCCCC--CCCCCC---cccchHHHhhhccc
Q psy12278 52 DLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL------SCCPT--CRGPLG---NIRNLAMEKVAGTM 112 (300)
Q Consensus 52 ~l~~~l~CpiC~~~~~~Pi~qC~~GH~~C~~C~~~~------~~Cp~--Cr~~~~---~~rn~~lEk~~~~l 112 (300)
.....+.||||+++|.+||..=.|||+||..|+... ..||. |+..+. ...|..|.+++..+
T Consensus 177 ~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~lve~~ 248 (267)
T 3htk_C 177 GGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCKIA 248 (267)
T ss_dssp SSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHHHHHH
T ss_pred CCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHHHHHH
Confidence 346779999999999999853256999999997642 36999 999865 25677777766543
No 57
>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens}
Probab=97.63 E-value=2.3e-05 Score=56.65 Aligned_cols=55 Identities=20% Similarity=0.398 Sum_probs=48.0
Q ss_pred ccccccCCCCCCCceeEeccCChHHHHH-hCCCCCccCCCCCCCCcccccHHHHHHHhhhccC
Q psy12278 110 GTMWFPCRYQMNGCGISLLHTEKPEHED-TCEHRPYLCPCPGASCKWGGALDQVMAHLNQSHK 171 (300)
Q Consensus 110 ~~l~v~C~~~~~GC~~~~~~~~~~~He~-~C~f~~~~Cp~~~~~C~~~g~~~~l~~Hl~~~H~ 171 (300)
....+.|++ ||+..+...++++|++ +|+++++.|++ |++...+.+|..|...+-.
T Consensus 13 ~~~~v~C~~---~C~~~v~r~~l~~H~~~~C~~r~v~C~~----C~~~~~~~~l~~H~~~Cp~ 68 (76)
T 2yuc_A 13 SFNVIPCPN---RCPMKLSRRDLPAHLQHDCPKRRLKCEF----CGCDFSGEAYESHEGMCPQ 68 (76)
T ss_dssp CCSCCBCTT---CCSCBCCSSSSTTTTTTSCTTSCCCCSS----SCCCCCHHHHHHTTTSCTT
T ss_pred CCcccCCCc---cccHHhhHhHHHhhCHhhCCCcceECCC----CCCccCHHHHHHHHhHCCC
Confidence 346788876 7999999999999998 89999999997 9999999999999865543
No 58
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=97.60 E-value=1.2e-05 Score=60.31 Aligned_cols=47 Identities=19% Similarity=0.463 Sum_probs=36.0
Q ss_pred CCCCceeecccccCCCC--ceeeccCCcccCccccCC----CCCCCCCCCCCC
Q psy12278 52 DLASLFECPVCFDYVLP--PIIQCQSGHLVCSNCRPK----LSCCPTCRGPLG 98 (300)
Q Consensus 52 ~l~~~l~CpiC~~~~~~--Pi~qC~~GH~~C~~C~~~----~~~Cp~Cr~~~~ 98 (300)
...+...|+||++.+.. .+..-+|||.||..|+.+ ...||.||.++.
T Consensus 36 ~~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 36 AVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFP 88 (91)
T ss_dssp SSSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSS
T ss_pred ccCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCC
Confidence 44567899999998876 223446799999999764 358999998764
No 59
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=97.57 E-value=5.3e-06 Score=65.83 Aligned_cols=45 Identities=31% Similarity=0.846 Sum_probs=36.6
Q ss_pred CCceeecccccCCCCce------eeccCCcccCccccCC----CCCCCCCCCCCC
Q psy12278 54 ASLFECPVCFDYVLPPI------IQCQSGHLVCSNCRPK----LSCCPTCRGPLG 98 (300)
Q Consensus 54 ~~~l~CpiC~~~~~~Pi------~qC~~GH~~C~~C~~~----~~~Cp~Cr~~~~ 98 (300)
.+.+.||||++.+..|+ ..-+|||.||..|+.+ ...||.||.++.
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 59 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 59 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCT
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCc
Confidence 45789999999998881 3446799999999864 358999999876
No 60
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=97.51 E-value=3.5e-05 Score=59.90 Aligned_cols=43 Identities=19% Similarity=0.410 Sum_probs=33.3
Q ss_pred ceeecccccCCCCce-----------------eeccCCcccCccccCC---------CCCCCCCCCCCC
Q psy12278 56 LFECPVCFDYVLPPI-----------------IQCQSGHLVCSNCRPK---------LSCCPTCRGPLG 98 (300)
Q Consensus 56 ~l~CpiC~~~~~~Pi-----------------~qC~~GH~~C~~C~~~---------~~~Cp~Cr~~~~ 98 (300)
+..|+||++.+..|. ..-+|||.||..|+.. ...||.||..+.
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~ 93 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYG 93 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSS
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccC
Confidence 458999999997653 1335799999999753 347999999875
No 61
>2yre_A F-box only protein 30; zinc binding, E3 ubiquitin ligase, SCF, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.50 E-value=4.1e-05 Score=58.21 Aligned_cols=58 Identities=21% Similarity=0.319 Sum_probs=44.0
Q ss_pred CCCC-CCCCCCCcccchHHH--hhhccccccCCCCCCCceeEeccCChHHHHHhCCCCCccCC
Q psy12278 88 SCCP-TCRGPLGNIRNLAME--KVAGTMWFPCRYQMNGCGISLLHTEKPEHEDTCEHRPYLCP 147 (300)
Q Consensus 88 ~~Cp-~Cr~~~~~~rn~~lE--k~~~~l~v~C~~~~~GC~~~~~~~~~~~He~~C~f~~~~Cp 147 (300)
..|| .|...+ .|...-| .+.....++|+|+.+||..++...++..||+.|+...+.|.
T Consensus 38 i~CP~~Cga~i--~rckL~EH~~~CP~a~v~C~~~~yGCp~~~~R~~L~~He~~CPas~v~~~ 98 (100)
T 2yre_A 38 IGCPLVCGAVF--HSCKADEHRLLCPFERVPCLNSDFGCPFTMARNKVAEHLEMCPASVSGPS 98 (100)
T ss_dssp EECTTCCSCEE--EHHHHHHHHHHCSSSEEECTTTTTTCCCEEESSTHHHHHHTCGGGCCCCC
T ss_pred eeCCcccCCee--ehhhHHHHHhhcccccccccccCcCCceeecHHHHHHHHhhCCceeEecC
Confidence 4678 686532 3333222 34667789999999999999999999999999998877653
No 62
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=97.49 E-value=3.4e-05 Score=72.74 Aligned_cols=46 Identities=26% Similarity=0.554 Sum_probs=37.6
Q ss_pred CCCCceeecccccCCCCceeeccCCcccCccccC-----CCCCCCCCCCCCC
Q psy12278 52 DLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRP-----KLSCCPTCRGPLG 98 (300)
Q Consensus 52 ~l~~~l~CpiC~~~~~~Pi~qC~~GH~~C~~C~~-----~~~~Cp~Cr~~~~ 98 (300)
...+...|+||.+.+..|+. -+|||.||..|.. ....||.||.++.
T Consensus 328 ~~~~~~~C~ICle~~~~pv~-lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~ 378 (389)
T 2y1n_A 328 MGSTFQLCKICAENDKDVKI-EPCGHLMCTSCLTSWQESEGQGCPFCRCEIK 378 (389)
T ss_dssp TTTSSSBCTTTSSSBCCEEE-ETTCCEECHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred hcCCCCCCCccCcCCCCeEE-eCCCChhhHHHHHHHHhcCCCCCCCCCCccC
Confidence 34455799999999999974 3679999999976 3468999999875
No 63
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=97.43 E-value=1.3e-05 Score=56.09 Aligned_cols=43 Identities=30% Similarity=0.733 Sum_probs=35.2
Q ss_pred ceeecccccCCCCcee-eccCCcc-cCccccCCC----CCCCCCCCCCC
Q psy12278 56 LFECPVCFDYVLPPII-QCQSGHL-VCSNCRPKL----SCCPTCRGPLG 98 (300)
Q Consensus 56 ~l~CpiC~~~~~~Pi~-qC~~GH~-~C~~C~~~~----~~Cp~Cr~~~~ 98 (300)
...|+||++..+++++ .-+|||. +|..|..++ ..||.||.++.
T Consensus 7 ~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 7 LKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred CCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 4579999999999864 2367998 899997754 38999999875
No 64
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=97.39 E-value=1.4e-05 Score=56.03 Aligned_cols=44 Identities=34% Similarity=0.754 Sum_probs=36.0
Q ss_pred CceeecccccCCCCceee-ccCCcc-cCccccCCC----CCCCCCCCCCC
Q psy12278 55 SLFECPVCFDYVLPPIIQ-CQSGHL-VCSNCRPKL----SCCPTCRGPLG 98 (300)
Q Consensus 55 ~~l~CpiC~~~~~~Pi~q-C~~GH~-~C~~C~~~~----~~Cp~Cr~~~~ 98 (300)
+...|+||++...++++. -+|||. +|..|..+. ..||.||.++.
T Consensus 7 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 456899999999999863 266999 899997753 46999999875
No 65
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.28 E-value=1.6e-05 Score=59.87 Aligned_cols=42 Identities=19% Similarity=0.509 Sum_probs=32.8
Q ss_pred CceeecccccCCCCcee-e-ccCCcccCccccCCC------------CCCCC--CCCC
Q psy12278 55 SLFECPVCFDYVLPPII-Q-CQSGHLVCSNCRPKL------------SCCPT--CRGP 96 (300)
Q Consensus 55 ~~l~CpiC~~~~~~Pi~-q-C~~GH~~C~~C~~~~------------~~Cp~--Cr~~ 96 (300)
+.+.|+||++.+..|.+ . -+|||.||..|+... ..||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 46789999999988864 2 247999999997631 26998 9887
No 66
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=97.18 E-value=2.9e-05 Score=61.42 Aligned_cols=45 Identities=33% Similarity=0.852 Sum_probs=37.0
Q ss_pred CCceeecccccCCCCc------eeeccCCcccCccccCC----CCCCCCCCCCCC
Q psy12278 54 ASLFECPVCFDYVLPP------IIQCQSGHLVCSNCRPK----LSCCPTCRGPLG 98 (300)
Q Consensus 54 ~~~l~CpiC~~~~~~P------i~qC~~GH~~C~~C~~~----~~~Cp~Cr~~~~ 98 (300)
.+.+.|+||.+.+..| +...+|||.||..|+.+ ...||.||.++.
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 124 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 124 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCC
Confidence 4678899999999876 24667899999999874 368999999875
No 67
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.16 E-value=0.00015 Score=53.10 Aligned_cols=44 Identities=18% Similarity=0.386 Sum_probs=33.5
Q ss_pred CceeecccccCCCC--------------ceeeccCCcccCccccCC----CCCCCCCCCCCC
Q psy12278 55 SLFECPVCFDYVLP--------------PIIQCQSGHLVCSNCRPK----LSCCPTCRGPLG 98 (300)
Q Consensus 55 ~~l~CpiC~~~~~~--------------Pi~qC~~GH~~C~~C~~~----~~~Cp~Cr~~~~ 98 (300)
+.-.|+||++.+.. ++....|||.|+..|+.+ ...||.||.++.
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 75 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWV 75 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCC
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcc
Confidence 34569999999876 333435799999999763 358999999864
No 68
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=97.04 E-value=0.00057 Score=56.81 Aligned_cols=54 Identities=17% Similarity=0.271 Sum_probs=46.6
Q ss_pred hhccccccCCCCCCCceeEeccCChHHHH-HhCCCCCccCCCCCCCCcccccHHHHHHHhhhc
Q psy12278 108 VAGTMWFPCRYQMNGCGISLLHTEKPEHE-DTCEHRPYLCPCPGASCKWGGALDQVMAHLNQS 169 (300)
Q Consensus 108 ~~~~l~v~C~~~~~GC~~~~~~~~~~~He-~~C~f~~~~Cp~~~~~C~~~g~~~~l~~Hl~~~ 169 (300)
...-..++|+ ||++.+...++..|+ ..|++++..|++ |++.....++..|...+
T Consensus 105 ~C~~~~v~C~----~C~~~~~r~~l~~H~~~~C~~r~~~C~~----C~~~~~~~~l~~H~~~~ 159 (170)
T 3hcs_A 105 HCEFALMDCP----QCQRPFQKFHINIHILKDCPRRQVSCDN----CAASMAFEDKEIHDQNC 159 (170)
T ss_dssp TCTTSEEECT----TTCCEEEGGGHHHHHHHTCTTCEEECTT----TCCEEEGGGHHHHHTTC
T ss_pred cCCceeeECC----CCChHHHHHHHHHHhhhhCCCCCeECCC----CCCccCHHHHHhHHHhC
Confidence 3444567887 799999999999999 599999999995 99999999999998654
No 69
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=96.64 E-value=0.00033 Score=48.56 Aligned_cols=43 Identities=14% Similarity=0.202 Sum_probs=35.5
Q ss_pred ceeecccccCCCCceeeccCCcccCccccCCC----CCCCCCCCCCC
Q psy12278 56 LFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL----SCCPTCRGPLG 98 (300)
Q Consensus 56 ~l~CpiC~~~~~~Pi~qC~~GH~~C~~C~~~~----~~Cp~Cr~~~~ 98 (300)
.|.|||++++|.+|+..-.+||+|+..|+.+. ..||..+.++.
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~ 49 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLS 49 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCC
Confidence 47899999999999743268999999998863 46999998875
No 70
>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens}
Probab=96.63 E-value=0.00073 Score=48.53 Aligned_cols=64 Identities=17% Similarity=0.377 Sum_probs=44.8
Q ss_pred ccccCCCCCCC-CCCCCCCcc-cchHHHhhhccccccCCCCCCCceeEeccCChHHHHHhCCCCCccCCC
Q psy12278 81 SNCRPKLSCCP-TCRGPLGNI-RNLAMEKVAGTMWFPCRYQMNGCGISLLHTEKPEHEDTCEHRPYLCPC 148 (300)
Q Consensus 81 ~~C~~~~~~Cp-~Cr~~~~~~-rn~~lEk~~~~l~v~C~~~~~GC~~~~~~~~~~~He~~C~f~~~~Cp~ 148 (300)
..|--....|| .|...+... -..-++.......+.|++ |...+...+++.|+++|+.+++.||.
T Consensus 10 ~~C~~~~v~C~~~C~~~v~r~~l~~H~~~~C~~r~v~C~~----C~~~~~~~~l~~H~~~Cp~~~v~C~~ 75 (76)
T 2yuc_A 10 NTCSFNVIPCPNRCPMKLSRRDLPAHLQHDCPKRRLKCEF----CGCDFSGEAYESHEGMCPQESSGPSS 75 (76)
T ss_dssp CCCCCSCCBCTTCCSCBCCSSSSTTTTTTSCTTSCCCCSS----SCCCCCHHHHHHTTTSCTTSSCCCSC
T ss_pred HHCCCcccCCCccccHHhhHhHHHhhCHhhCCCcceECCC----CCCccCHHHHHHHHhHCCCCccCCCC
Confidence 45655556775 676554310 001112245567788988 99999999999999999999999985
No 71
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.60 E-value=0.00024 Score=51.03 Aligned_cols=54 Identities=24% Similarity=0.411 Sum_probs=46.2
Q ss_pred ccccccCCCCCCCceeEeccCChHHHHHhCCCCCccCCCCCCCCcccccHHHHHHHhhhccC
Q psy12278 110 GTMWFPCRYQMNGCGISLLHTEKPEHEDTCEHRPYLCPCPGASCKWGGALDQVMAHLNQSHK 171 (300)
Q Consensus 110 ~~l~v~C~~~~~GC~~~~~~~~~~~He~~C~f~~~~Cp~~~~~C~~~g~~~~l~~Hl~~~H~ 171 (300)
....+.|++ |...+...++..|+..|+.+|+.|+. |+....+.+|..|++.+..
T Consensus 14 ~~r~~~C~~----C~~~~~~~~L~~H~~~c~~~~~~C~~----C~~~~~~~~l~~H~~~c~~ 67 (75)
T 2d9k_A 14 PLRLAVCQH----CDLELSILKLKEHEDYCGARTELCGN----CGRNVLVKDLKTHPEVCGR 67 (75)
T ss_dssp CCCCEECSS----SCCEECHHHHHHHHHHHHHCEEECSS----SCCEEETTGGGTHHHHBTT
T ss_pred CCcccCCcc----cChHhhHHHHHHHHhHcCCCceEccc----CCCcCcHHHHHHHHHHccC
Confidence 345677876 99999999999999999999999985 8888889999999987654
No 72
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=96.36 E-value=0.0013 Score=50.80 Aligned_cols=44 Identities=14% Similarity=0.335 Sum_probs=34.3
Q ss_pred CceeecccccCCCCc-----------------eeeccCCcccCccccCC----CCCCCCCCCCCC
Q psy12278 55 SLFECPVCFDYVLPP-----------------IIQCQSGHLVCSNCRPK----LSCCPTCRGPLG 98 (300)
Q Consensus 55 ~~l~CpiC~~~~~~P-----------------i~qC~~GH~~C~~C~~~----~~~Cp~Cr~~~~ 98 (300)
+.-.|+||++.+..+ +..-+|||.|+..|+.+ ...||.||.++.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 345799999998865 33346799999999874 368999999864
No 73
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=96.08 E-value=0.00098 Score=52.39 Aligned_cols=42 Identities=14% Similarity=0.356 Sum_probs=0.0
Q ss_pred eeecccccCCCCc-----------------eeeccCCcccCccccCCC----CCCCCCCCCCC
Q psy12278 57 FECPVCFDYVLPP-----------------IIQCQSGHLVCSNCRPKL----SCCPTCRGPLG 98 (300)
Q Consensus 57 l~CpiC~~~~~~P-----------------i~qC~~GH~~C~~C~~~~----~~Cp~Cr~~~~ 98 (300)
-.|+||++.+..+ +...+|||.|+..|+.+- ..||.||.++.
T Consensus 49 d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 49 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp ---------------------------------------------------------------
T ss_pred CcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence 4799999999764 222357999999998762 57999999864
No 74
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=95.91 E-value=0.0014 Score=49.73 Aligned_cols=43 Identities=23% Similarity=0.423 Sum_probs=33.4
Q ss_pred eecccccCCCCceeeccCCcccCccccC-----CCCCCCCCCCCCCcc
Q psy12278 58 ECPVCFDYVLPPIIQCQSGHLVCSNCRP-----KLSCCPTCRGPLGNI 100 (300)
Q Consensus 58 ~CpiC~~~~~~Pi~qC~~GH~~C~~C~~-----~~~~Cp~Cr~~~~~~ 100 (300)
-|+.|..+++.-...=+|.|.||..|.. +...||.|+.++..+
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rV 50 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRI 50 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeee
Confidence 4899999987654344679999999984 346899999998643
No 75
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=92.77 E-value=0.032 Score=41.88 Aligned_cols=32 Identities=16% Similarity=0.392 Sum_probs=26.7
Q ss_pred Cceeeccccc-CCCCceeec-cCCcccCccccCC
Q psy12278 55 SLFECPVCFD-YVLPPIIQC-QSGHLVCSNCRPK 86 (300)
Q Consensus 55 ~~l~CpiC~~-~~~~Pi~qC-~~GH~~C~~C~~~ 86 (300)
+++.|++|.+ +..+|+..| +|||.||..|...
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~ 35 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKA 35 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHH
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHH
Confidence 4688999996 578888777 5899999999874
No 76
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=91.73 E-value=0.046 Score=42.31 Aligned_cols=67 Identities=13% Similarity=0.081 Sum_probs=39.2
Q ss_pred HHhhhccccccCCCCCCCceeEeccCChH---HHHHhCCCCCccCCCCCCCCcccccHHHHHHHhhhccCccceec
Q psy12278 105 MEKVAGTMWFPCRYQMNGCGISLLHTEKP---EHEDTCEHRPYLCPCPGASCKWGGALDQVMAHLNQSHKSITTLQ 177 (300)
Q Consensus 105 lEk~~~~l~v~C~~~~~GC~~~~~~~~~~---~He~~C~f~~~~Cp~~~~~C~~~g~~~~l~~Hl~~~H~~~~~~~ 177 (300)
+++.+..-...||. |...+...++. .=++.=.-..+.||+. +|+|.+.+.++..|+..++......+
T Consensus 45 i~~~~~~~~~~CP~----Cr~~~~~~~~~~~~~l~~~i~~l~v~C~n~--gC~~~~~~~~l~~H~~~c~~~~~~~~ 114 (118)
T 3hct_A 45 IIKSIRDAGHKCPV----DNEILLENQLFPDNFAKREILSLMVKCPNE--GCLHKMELRHLEDHQAHCEFALLEHH 114 (118)
T ss_dssp HHHHHHHHCSBCTT----TCCBCCGGGCEECHHHHHHHHTSEEECSST--TCCCEEEGGGSGGGTSSSCC------
T ss_pred HHHHHhhCCCCCCC----CCCCcCHHhcccCHHHHHHHccceeECCCC--CCCCEEeeHHHHHHHHHchhhhhhhc
Confidence 34444433347886 77666554321 1111122356789864 79999999999999999998765433
No 77
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=91.65 E-value=0.051 Score=50.24 Aligned_cols=45 Identities=27% Similarity=0.738 Sum_probs=35.7
Q ss_pred CCceeecccccCCCC----ceeecc---CCcccCccccCCC---------------CCCCCCCCCCC
Q psy12278 54 ASLFECPVCFDYVLP----PIIQCQ---SGHLVCSNCRPKL---------------SCCPTCRGPLG 98 (300)
Q Consensus 54 ~~~l~CpiC~~~~~~----Pi~qC~---~GH~~C~~C~~~~---------------~~Cp~Cr~~~~ 98 (300)
+..-.|+||++.+.+ |...|. |||.|=+.|..+- ..||.||.++.
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 456789999999886 766774 7999999997531 36999999875
No 78
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.24 E-value=0.062 Score=38.04 Aligned_cols=48 Identities=15% Similarity=0.238 Sum_probs=35.7
Q ss_pred CChHHHHH-hCCCCCccCCCCCCCCcccccHHHHHHHhhhccCccceecCCce
Q psy12278 130 TEKPEHED-TCEHRPYLCPCPGASCKWGGALDQVMAHLNQSHKSITTLQGEDI 181 (300)
Q Consensus 130 ~~~~~He~-~C~f~~~~Cp~~~~~C~~~g~~~~l~~Hl~~~H~~~~~~~g~~~ 181 (300)
.++..|+. .|+++|+.|++ |+......+|..|...+-.....+..+..
T Consensus 3 ~~L~~H~~~~c~~r~~~C~~----C~~~~~~~~L~~H~~~c~~~~~~C~~C~~ 51 (75)
T 2d9k_A 3 SGSSGHEETECPLRLAVCQH----CDLELSILKLKEHEDYCGARTELCGNCGR 51 (75)
T ss_dssp CCCSCCCCCCCCCCCEECSS----SCCEECHHHHHHHHHHHHHCEEECSSSCC
T ss_pred hHHHhhCcccCCCcccCCcc----cChHhhHHHHHHHHhHcCCCceEcccCCC
Confidence 46788986 89999999985 99999999999998433233334554543
No 79
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=88.63 E-value=0.47 Score=35.57 Aligned_cols=107 Identities=22% Similarity=0.342 Sum_probs=66.7
Q ss_pred CceeecccccCCCCceeeccCCcccCccccCCCCCCCCCCCCCCcccchHHHhh-----hccccccCCCCCCCceeEecc
Q psy12278 55 SLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKLSCCPTCRGPLGNIRNLAMEKV-----AGTMWFPCRYQMNGCGISLLH 129 (300)
Q Consensus 55 ~~l~CpiC~~~~~~Pi~qC~~GH~~C~~C~~~~~~Cp~Cr~~~~~~rn~~lEk~-----~~~l~v~C~~~~~GC~~~~~~ 129 (300)
..+.|++|...+...... ..|.- ..-..+...|+.|...+....++..-.. .....+.|+. |...+..
T Consensus 6 ~~~~C~~C~~~f~~~~~l--~~H~~-~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~----C~~~f~~ 78 (124)
T 2dlq_A 6 SGVECPTCHKKFLSKYYL--KVHNR-KHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSV----CQETFRR 78 (124)
T ss_dssp SSCCCTTTCCCCSSHHHH--HHHHH-HHSSCCSCBCTTTCCBCSSHHHHHHHHHHCCCCSCCCCEECSS----SCCEESS
T ss_pred CCCCCCCCCCcCCCHHHH--HHHHH-hCCCCCCeECCCCCchhcCHHHHHHHHhhhhcCCCCCCeECCC----CCCccCC
Confidence 458899999988765311 12321 0001234579999877754333322111 2345577886 9888766
Q ss_pred -CChHHHHHh-CCCCCccCCCCCCCCccccc-HHHHHHHhhhccCc
Q psy12278 130 -TEKPEHEDT-CEHRPYLCPCPGASCKWGGA-LDQVMAHLNQSHKS 172 (300)
Q Consensus 130 -~~~~~He~~-C~f~~~~Cp~~~~~C~~~g~-~~~l~~Hl~~~H~~ 172 (300)
..+..|... -.-+++.|+. |+.... ...|..|++..|..
T Consensus 79 ~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~l~~H~~~~H~~ 120 (124)
T 2dlq_A 79 RMELRLHMVSHTGEMPYKCSS----CSQQFMQKKDLQSHMIKLHSG 120 (124)
T ss_dssp HHHHHHHHHHHSSSCSEECSS----SCCEESSHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHcCCCCCccCCC----ccchhCCHHHHHHHHHHHCCC
Confidence 457888764 3457889985 776664 66899999988863
No 80
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.24 E-value=0.53 Score=33.49 Aligned_cols=43 Identities=21% Similarity=0.529 Sum_probs=32.5
Q ss_pred CceeecccccCCCCceeec-cCCcccCccccCC----C--CCCCCCCCCCC
Q psy12278 55 SLFECPVCFDYVLPPIIQC-QSGHLVCSNCRPK----L--SCCPTCRGPLG 98 (300)
Q Consensus 55 ~~l~CpiC~~~~~~Pi~qC-~~GH~~C~~C~~~----~--~~Cp~Cr~~~~ 98 (300)
..-.|.||++++.+- ..| .|+|.|=..|+.+ . ..||.|+.++.
T Consensus 14 ~i~~C~IC~~~i~~g-~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 14 AVKICNICHSLLIQG-QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp SSCBCSSSCCBCSSS-EECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred CCCcCcchhhHcccC-CccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 456799999999854 467 5788887777652 2 57999998875
No 81
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=88.24 E-value=0.41 Score=36.53 Aligned_cols=61 Identities=15% Similarity=0.248 Sum_probs=39.1
Q ss_pred HHhhhccccccCCCCCCCceeEeccCCh----HHHHHhCCCCCccCCCCCCCCcccccHHHHHHHhhhccC
Q psy12278 105 MEKVAGTMWFPCRYQMNGCGISLLHTEK----PEHEDTCEHRPYLCPCPGASCKWGGALDQVMAHLNQSHK 171 (300)
Q Consensus 105 lEk~~~~l~v~C~~~~~GC~~~~~~~~~----~~He~~C~f~~~~Cp~~~~~C~~~g~~~~l~~Hl~~~H~ 171 (300)
+++.+......||. |...+...++ ..-++.=.-..+.||+. ||+|.+.+.++..|+..+..
T Consensus 50 i~~~~~~~~~~CP~----Cr~~~~~~~~~~~~~~l~~~i~~l~v~C~~~--gC~~~~~~~~~~~H~~~C~~ 114 (116)
T 1rmd_A 50 ILRCLKVMGSYCPS----CRYPCFPTDLESPVKSFLNILNSLMVKCPAQ--DCNEEVSLEKYNHHVSSHKE 114 (116)
T ss_dssp HHHHHHHTCSBCTT----TCCBCCGGGCBCCCHHHHHHHHHCEEECCST--TCCCEEEHHHHHHHHHTSCC
T ss_pred HHHHHhHCcCcCCC----CCCCCCHhhccccHHHHHHHHHHhcCCCCCC--CCcchhhHhHHHHHHHHhhc
Confidence 34444433557886 7766654432 12222223345678885 79999999999999987653
No 82
>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.11 E-value=0.17 Score=34.18 Aligned_cols=50 Identities=28% Similarity=0.632 Sum_probs=34.9
Q ss_pred ccccCCCCCCCceeEeccCChHHHHHhCCCCCccCCCCCCCCcccc-cHHHHHHHhhh
Q psy12278 112 MWFPCRYQMNGCGISLLHTEKPEHEDTCEHRPYLCPCPGASCKWGG-ALDQVMAHLNQ 168 (300)
Q Consensus 112 l~v~C~~~~~GC~~~~~~~~~~~He~~C~f~~~~Cp~~~~~C~~~g-~~~~l~~Hl~~ 168 (300)
-.+.|.. |...+....+..|+..+.-+|+.|++ .|+... ...+|..|++.
T Consensus 9 ~~~~C~~----C~k~f~~~~L~~H~~~~~~~p~~C~~---~C~k~f~~~~~L~~H~~~ 59 (66)
T 2eod_A 9 RTQPCTY----CTKEFVFDTIQSHQYQCPRLPVACPN---QCGVGTVAREDLPGHLKD 59 (66)
T ss_dssp CEEECSS----SCCEEEHHHHHHHHHHCSSSEEECTT---CCSCCEEETTTHHHHHHT
T ss_pred CCeeccc----cCCccCHHHHHHHHHHcCCcCccCCc---ccCcccccHHHHHHHHHh
Confidence 4566765 77777766678888777788888872 276653 45578888765
No 83
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=87.82 E-value=1.5 Score=31.66 Aligned_cols=70 Identities=19% Similarity=0.444 Sum_probs=46.9
Q ss_pred CCceeecccccCCCCce-eecc--CCcccCccccCCCCCCCCCCCCCCcccchHHHhhhccccccCCCCCCCceeEeccC
Q psy12278 54 ASLFECPVCFDYVLPPI-IQCQ--SGHLVCSNCRPKLSCCPTCRGPLGNIRNLAMEKVAGTMWFPCRYQMNGCGISLLHT 130 (300)
Q Consensus 54 ~~~l~CpiC~~~~~~Pi-~qC~--~GH~~C~~C~~~~~~Cp~Cr~~~~~~rn~~lEk~~~~l~v~C~~~~~GC~~~~~~~ 130 (300)
...|.|-+|.+-+.+-- +||+ .+|.||-.|-. ..+++.-....+.||--
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr-----------------~sIk~q~~~~EvyCPSG----------- 64 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSR-----------------ESIKAQGATGEVYCPSG----------- 64 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHH-----------------HHHHHHHSSSCCCCTTS-----------
T ss_pred CCeeEeecchhhhccCceeeCCCccCCeeeccccH-----------------HHHHhcCCCCcEECCCC-----------
Confidence 35789999999999875 5997 58999988832 12344445566777642
Q ss_pred ChHHHHHhCCCCCccCCCCCCCCcccccHHHHHH
Q psy12278 131 EKPEHEDTCEHRPYLCPCPGASCKWGGALDQVMA 164 (300)
Q Consensus 131 ~~~~He~~C~f~~~~Cp~~~~~C~~~g~~~~l~~ 164 (300)
-+||..+..=.|.....++..
T Consensus 65 -------------~kCpL~gS~~PWAFmqgEIat 85 (93)
T 2cs3_A 65 -------------EKCPLVGSNVPWAFMQGEIAT 85 (93)
T ss_dssp -------------SCCBCSSSSSBCCCCHHHHHH
T ss_pred -------------CccccCCCcCchHHHhhHHHH
Confidence 246666666666666655544
No 84
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.42 E-value=0.42 Score=34.43 Aligned_cols=44 Identities=27% Similarity=0.579 Sum_probs=31.6
Q ss_pred CceeecccccCCC--Ccee-eccC---CcccCccccCCC------CCCCCCCCCCC
Q psy12278 55 SLFECPVCFDYVL--PPII-QCQS---GHLVCSNCRPKL------SCCPTCRGPLG 98 (300)
Q Consensus 55 ~~l~CpiC~~~~~--~Pi~-qC~~---GH~~C~~C~~~~------~~Cp~Cr~~~~ 98 (300)
+...|.||++.+. .++. -|.| +|.|-..|+.+. ..||.||.++.
T Consensus 14 ~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~ 69 (80)
T 2d8s_A 14 SQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFI 69 (80)
T ss_dssp TSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCC
T ss_pred CCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeee
Confidence 3457999997763 4543 3443 499999998742 47999999875
No 85
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=83.88 E-value=0.53 Score=32.05 Aligned_cols=36 Identities=25% Similarity=0.717 Sum_probs=29.0
Q ss_pred eecccccCCCCc-eeecc-CCcccCcccc----CCCCCCCCC
Q psy12278 58 ECPVCFDYVLPP-IIQCQ-SGHLVCSNCR----PKLSCCPTC 93 (300)
Q Consensus 58 ~CpiC~~~~~~P-i~qC~-~GH~~C~~C~----~~~~~Cp~C 93 (300)
.|-.|...+.+. +|+|+ |++.||..|- +.+..||-|
T Consensus 17 ~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 17 FCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp EETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred cccccCcccCCCccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 599999998655 48996 8999999993 345789988
No 86
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=80.92 E-value=2 Score=30.43 Aligned_cols=53 Identities=25% Similarity=0.587 Sum_probs=35.4
Q ss_pred ccccCCCCCCCceeEecc-CChHHHHHhCCC---CCccCCCCCCCCcccc-cHHHHHHHhhhccCc
Q psy12278 112 MWFPCRYQMNGCGISLLH-TEKPEHEDTCEH---RPYLCPCPGASCKWGG-ALDQVMAHLNQSHKS 172 (300)
Q Consensus 112 l~v~C~~~~~GC~~~~~~-~~~~~He~~C~f---~~~~Cp~~~~~C~~~g-~~~~l~~Hl~~~H~~ 172 (300)
..+.|+. |...+.. ..+..|...-.- .++.|+. |+... ....|..|++..|..
T Consensus 34 ~~~~C~~----C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~----C~~~f~~~~~L~~H~~~~H~~ 91 (95)
T 2yt9_A 34 KPYSCPV----CGLRFKRKDRMSYHVRSHDGSVGKPYICQS----CGKGFSRPDHLNGHIKQVHSG 91 (95)
T ss_dssp CSEECSS----SCCEESCHHHHHHHHHHHCCCCCSSBCCSS----SCCCBSSHHHHHHHHHHTSCC
T ss_pred CCCcCCC----CCCccCCHHHHHHHHHHhcCCCCCceECCC----ccchhCCHHHHHHHHHHhcCC
Confidence 3456665 7766654 346777764332 6788975 77665 467899999988853
No 87
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=80.20 E-value=3.7 Score=29.10 Aligned_cols=36 Identities=22% Similarity=0.390 Sum_probs=26.7
Q ss_pred eeecccccCCCCceeeccCCcccCccccCCC-CCCCC
Q psy12278 57 FECPVCFDYVLPPIIQCQSGHLVCSNCRPKL-SCCPT 92 (300)
Q Consensus 57 l~CpiC~~~~~~Pi~qC~~GH~~C~~C~~~~-~~Cp~ 92 (300)
-.|..|..-+.-+-++|.||..||+.=+-.. -.|+.
T Consensus 26 ~RC~~C~kkvgL~~f~CrCg~~FCs~HRy~e~H~C~f 62 (74)
T 1wfp_A 26 TRCLSCNKKVGVTGFKCRCGSTFCGTHRYPESHECQF 62 (74)
T ss_dssp CBCSSSCCBCTTTCEECTTSCEECTTTCSTTTSCCCS
T ss_pred ccchhhcCcccccceEeccCCEeccccCCCcCCCCcC
Confidence 5799999876655589999999998776543 24543
No 88
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=79.30 E-value=2 Score=29.62 Aligned_cols=37 Identities=22% Similarity=0.318 Sum_probs=27.1
Q ss_pred ceeecccccCCCCceeeccCCcccCccccCCC-CCCCC
Q psy12278 56 LFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL-SCCPT 92 (300)
Q Consensus 56 ~l~CpiC~~~~~~Pi~qC~~GH~~C~~C~~~~-~~Cp~ 92 (300)
.-.|..|..-+.-+.++|.||..||+.=+... -.|+.
T Consensus 15 ~~rC~~C~kkvgl~~f~CrCg~~FC~~HR~~e~H~C~f 52 (64)
T 1wg2_A 15 NNRCFSCNKKVGVMGFKCKCGSTFCGSHRYPEKHECSF 52 (64)
T ss_dssp SCSCTTTCCCCTTSCEECTTSCEECSSSCSSTTTTCCC
T ss_pred CCcChhhCCcccccCeEeecCCEecccCCCccccCCCc
Confidence 35799999976554589999999998876543 24553
No 89
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=78.55 E-value=0.91 Score=33.50 Aligned_cols=44 Identities=16% Similarity=0.557 Sum_probs=35.4
Q ss_pred CceeecccccCCCCceeeccCCcccCccccCCC--CCCCCCCCCCC
Q psy12278 55 SLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL--SCCPTCRGPLG 98 (300)
Q Consensus 55 ~~l~CpiC~~~~~~Pi~qC~~GH~~C~~C~~~~--~~Cp~Cr~~~~ 98 (300)
+=|.|..|...|....+.-..|..+|..|..++ ..|..|..+|.
T Consensus 32 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~C~~~I~ 77 (101)
T 2cup_A 32 TCFRCAKCLHPLANETFVAKDNKILCNKCTTREDSPKCKGCFKAIV 77 (101)
T ss_dssp TTCCCSSSCCCTTSSCCEEETTEEECHHHHTTCCCCBCSSSCCBCC
T ss_pred cCCcccccCCCCCcCeeECcCCEEEChhHhhhhcCCccccCCCccc
Confidence 448899999999765454468999999998876 58999988875
No 90
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=78.42 E-value=5.6 Score=27.97 Aligned_cols=77 Identities=18% Similarity=0.427 Sum_probs=43.7
Q ss_pred CCCCCCCCCCCcccchHH--HhhhccccccCCCCCCCceeEecc-CChHHHHHhC-CCCCccCCCCCCCCcccc-cHHHH
Q psy12278 88 SCCPTCRGPLGNIRNLAM--EKVAGTMWFPCRYQMNGCGISLLH-TEKPEHEDTC-EHRPYLCPCPGASCKWGG-ALDQV 162 (300)
Q Consensus 88 ~~Cp~Cr~~~~~~rn~~l--Ek~~~~l~v~C~~~~~GC~~~~~~-~~~~~He~~C-~f~~~~Cp~~~~~C~~~g-~~~~l 162 (300)
..|+.|...+....++.. ..-...-.+.|+. |...+.. ..+..|...- .-+++.|+. |+... ...+|
T Consensus 9 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~l 80 (96)
T 2dmd_A 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKT----CDYAAADSSSLNKHLRIHSDERPFKCQI----CPYASRNSSQL 80 (96)
T ss_dssp CCBTTTTBCCCCHHHHHHHGGGCCCCCSEECSS----SCCEESSHHHHHHHHHHSCCCCCEECSS----SSCEESSHHHH
T ss_pred eECCCCCCccCCHHHHHHHHHhcCCCCCEeCCC----CCCccCCHHHHHHHHHHhCCCCCccCCC----CCCccCCHHHH
Confidence 356666655543222111 1111223456665 7766654 3466777542 345788985 77665 46789
Q ss_pred HHHhhhccCc
Q psy12278 163 MAHLNQSHKS 172 (300)
Q Consensus 163 ~~Hl~~~H~~ 172 (300)
..|++..|..
T Consensus 81 ~~H~~~h~~~ 90 (96)
T 2dmd_A 81 TVHLRSHTGD 90 (96)
T ss_dssp HHHHTTCCSC
T ss_pred HHHHHHhcCC
Confidence 9999877653
No 91
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=77.35 E-value=1.5 Score=32.12 Aligned_cols=45 Identities=24% Similarity=0.447 Sum_probs=26.5
Q ss_pred ceeEecc-CChHHHHHhCCCCCccCCCCCCCCcccc-cHHHHHHHhhhccC
Q psy12278 123 CGISLLH-TEKPEHEDTCEHRPYLCPCPGASCKWGG-ALDQVMAHLNQSHK 171 (300)
Q Consensus 123 C~~~~~~-~~~~~He~~C~f~~~~Cp~~~~~C~~~g-~~~~l~~Hl~~~H~ 171 (300)
|...+.. ..+..|..--.-+++.|+. |+... ....|..|++..|.
T Consensus 48 C~~~f~~~~~l~~H~~H~~~~~~~C~~----C~~~f~~~~~L~~H~~~~H~ 94 (107)
T 1wjp_A 48 CSLRFFSPELKQEHESKCEYKKLTCLE----CMRTFKSSFSIWRHQVEVHN 94 (107)
T ss_dssp TCCCBSSHHHHHHHHHHCSTGGGEEGG----GTEECSSHHHHHHHHHHTSC
T ss_pred CCCccCCHHHHHHHHHcCCCCCccCcc----ccchhCCHHHHHHHHHHHcC
Confidence 4444433 2344555433445677874 76655 45678899887775
No 92
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=76.91 E-value=0.43 Score=35.67 Aligned_cols=51 Identities=29% Similarity=0.779 Sum_probs=34.1
Q ss_pred eeecccccCCCCceeeccCCcccCccccCCC---CCCCCCCCCCCcccchHHHhhhccccccCCC
Q psy12278 57 FECPVCFDYVLPPIIQCQSGHLVCSNCRPKL---SCCPTCRGPLGNIRNLAMEKVAGTMWFPCRY 118 (300)
Q Consensus 57 l~CpiC~~~~~~Pi~qC~~GH~~C~~C~~~~---~~Cp~Cr~~~~~~rn~~lEk~~~~l~v~C~~ 118 (300)
..||.|...|.. ..|+..|..|-... ..||.|..++... +...+..+-|.+
T Consensus 33 ~~CP~Cq~eL~~-----~g~~~hC~~C~~~f~~~a~CPdC~q~LevL------kACGAvdYFC~~ 86 (101)
T 2jne_A 33 LHCPQCQHVLDQ-----DNGHARCRSCGEFIEMKALCPDCHQPLQVL------KACGAVDYFCQH 86 (101)
T ss_dssp CBCSSSCSBEEE-----ETTEEEETTTCCEEEEEEECTTTCSBCEEE------EETTEEEEEETT
T ss_pred ccCccCCCccee-----cCCEEECccccchhhccccCcchhhHHHHH------HHhcCcchhhcc
Confidence 799999988753 24666689997643 5899999886421 123445555654
No 93
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=75.86 E-value=3 Score=28.70 Aligned_cols=35 Identities=26% Similarity=0.467 Sum_probs=26.2
Q ss_pred eeecccccCCCCceeeccCCcccCccccCCC-CCCC
Q psy12278 57 FECPVCFDYVLPPIIQCQSGHLVCSNCRPKL-SCCP 91 (300)
Q Consensus 57 l~CpiC~~~~~~Pi~qC~~GH~~C~~C~~~~-~~Cp 91 (300)
-.|..|..-+.-+-++|.||..||+.=+-.. -.|+
T Consensus 16 ~rC~~C~kkvgl~~f~CrCg~~FC~~HRy~e~H~C~ 51 (64)
T 1wfh_A 16 NRCTVCRKRVGLTGFMCRCGTTFCGSHRYPEVHGCT 51 (64)
T ss_dssp CCCTTTCCCCCTTCEECSSSCEECTTTCSTTTTTCC
T ss_pred CcChhhCCccCccCEEeecCCEeccccCCcccCCCC
Confidence 5799999976554589999999998876533 2454
No 94
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=71.58 E-value=12 Score=27.43 Aligned_cols=42 Identities=19% Similarity=0.460 Sum_probs=25.8
Q ss_pred CCceeecccccCCCCceeeccC---C-cccCccccCCC------CCCCCCCCC
Q psy12278 54 ASLFECPVCFDYVLPPIIQCQS---G-HLVCSNCRPKL------SCCPTCRGP 96 (300)
Q Consensus 54 ~~~l~CpiC~~~~~~Pi~qC~~---G-H~~C~~C~~~~------~~Cp~Cr~~ 96 (300)
.+...| +|..+....+++|.+ . .+|=..|..-. -.||.|+..
T Consensus 34 ~e~~yC-iC~~~~~g~MI~CD~~dC~~~WfH~~CVgl~~~p~g~W~Cp~C~~~ 85 (91)
T 1weu_A 34 NEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQE 85 (91)
T ss_dssp CCCBCS-TTCCBCCSCCCCCSCSSCSCCCCCSTTTTCSSCCCSSCCCTTTCCC
T ss_pred CCCcEE-ECCCCCCCCEeEecCCCCCCCCEecccCCcCcCCCCCEECcCccCc
Confidence 456778 999987666778863 2 23434454321 368888654
No 95
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=70.46 E-value=0.99 Score=35.99 Aligned_cols=31 Identities=26% Similarity=0.684 Sum_probs=25.5
Q ss_pred CCCccCCCCCCCCcccccHHHHHH-HhhhccCcc
Q psy12278 141 HRPYLCPCPGASCKWGGALDQVMA-HLNQSHKSI 173 (300)
Q Consensus 141 f~~~~Cp~~~~~C~~~g~~~~l~~-Hl~~~H~~~ 173 (300)
-.++.||+ .||+|++.+.++.. |+..++..+
T Consensus 102 ~L~v~Cpn--~GC~~~~~l~~l~~~H~~~~~~~~ 133 (141)
T 3knv_A 102 SLPAVCPS--DGCTWKGTLKEYESCHEGRCPLML 133 (141)
T ss_dssp TSEEECCS--TTCCCEEEHHHHHHHTTTCCHHHH
T ss_pred ccccccCC--CCCCCEeEHHHHHHHHHHHhHHHH
Confidence 35678988 48999999999998 998887644
No 96
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=69.52 E-value=8.1 Score=27.32 Aligned_cols=36 Identities=28% Similarity=0.490 Sum_probs=25.7
Q ss_pred ceeecccccCCCCceeeccCCcccCccccCCC-CCCC
Q psy12278 56 LFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL-SCCP 91 (300)
Q Consensus 56 ~l~CpiC~~~~~~Pi~qC~~GH~~C~~C~~~~-~~Cp 91 (300)
.-.|..|..-+.-..++|.||..||+.=+-.. -.|+
T Consensus 25 ~nRC~~CrKkvgL~gf~CrCg~~FCs~HRy~e~H~C~ 61 (74)
T 1wfl_A 25 KNRCFMCRKKVGLTGFDCRCGNLFCGLHRYSDKHNCP 61 (74)
T ss_dssp TTBCSSSCCBCGGGCEECTTSCEECSSSCSTTTTTCC
T ss_pred CCcChhhCCcccccCeecCCCCEechhcCCCccCCCc
Confidence 35799999865443489999999998776533 2454
No 97
>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=69.11 E-value=2.9 Score=27.68 Aligned_cols=28 Identities=21% Similarity=0.373 Sum_probs=23.7
Q ss_pred HhCCCCCccCCCCCCCCcccccHHHHHHHhhh
Q psy12278 137 DTCEHRPYLCPCPGASCKWGGALDQVMAHLNQ 168 (300)
Q Consensus 137 ~~C~f~~~~Cp~~~~~C~~~g~~~~l~~Hl~~ 168 (300)
+.|+.+|+.|+. |+.......|..|++.
T Consensus 4 ~~C~~~~~~C~~----C~k~f~~~~L~~H~~~ 31 (66)
T 2eod_A 4 GSSGKRTQPCTY----CTKEFVFDTIQSHQYQ 31 (66)
T ss_dssp SCCCCCEEECSS----SCCEEEHHHHHHHHHH
T ss_pred ccCCCCCeeccc----cCCccCHHHHHHHHHH
Confidence 479999999985 8776668889999987
No 98
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=68.84 E-value=4.4 Score=29.20 Aligned_cols=31 Identities=19% Similarity=0.555 Sum_probs=23.7
Q ss_pred ceeecccccCCCCce--eecc-CCcccCccccCC
Q psy12278 56 LFECPVCFDYVLPPI--IQCQ-SGHLVCSNCRPK 86 (300)
Q Consensus 56 ~l~CpiC~~~~~~Pi--~qC~-~GH~~C~~C~~~ 86 (300)
.-.|.+|...|..-. ..|. ||.+||+.|-..
T Consensus 21 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 21 APACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp CCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCC
T ss_pred CCCCcCcCCccccchhcccccCCCcEEChHHhCC
Confidence 457999999876432 4785 899999999654
No 99
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=67.08 E-value=1.7 Score=31.45 Aligned_cols=37 Identities=32% Similarity=0.885 Sum_probs=24.4
Q ss_pred eeecccccCCCCceeeccCCcccCccccCCC---CCCCCCCCCCC
Q psy12278 57 FECPVCFDYVLPPIIQCQSGHLVCSNCRPKL---SCCPTCRGPLG 98 (300)
Q Consensus 57 l~CpiC~~~~~~Pi~qC~~GH~~C~~C~~~~---~~Cp~Cr~~~~ 98 (300)
..||.|...+.. ..++..|..|-... ..||.|..++.
T Consensus 3 ~~CP~C~~~l~~-----~~~~~~C~~C~~~~~~~afCPeCgq~Le 42 (81)
T 2jrp_A 3 ITCPVCHHALER-----NGDTAHCETCAKDFSLQALCPDCRQPLQ 42 (81)
T ss_dssp CCCSSSCSCCEE-----CSSEEECTTTCCEEEEEEECSSSCSCCC
T ss_pred CCCCCCCCcccc-----CCCceECccccccCCCcccCcchhhHHH
Confidence 679999987753 22445577775543 47888887764
No 100
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=66.28 E-value=1.5 Score=30.53 Aligned_cols=32 Identities=16% Similarity=0.104 Sum_probs=21.9
Q ss_pred ccCCCCceeecccccCCCCceeeccCCcccCcccc
Q psy12278 50 STDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCR 84 (300)
Q Consensus 50 ~~~l~~~l~CpiC~~~~~~Pi~qC~~GH~~C~~C~ 84 (300)
...+.+.|.||+|+..+.-- =..|.++|..|.
T Consensus 4 d~~LLeiL~CP~ck~~L~~~---~~~g~LvC~~c~ 35 (67)
T 2jny_A 4 DPQLLEVLACPKDKGPLRYL---ESEQLLVNERLN 35 (67)
T ss_dssp CGGGTCCCBCTTTCCBCEEE---TTTTEEEETTTT
T ss_pred CHHHHHHhCCCCCCCcCeEe---CCCCEEEcCCCC
Confidence 45678899999999966432 134667766663
No 101
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=65.76 E-value=5.8 Score=33.77 Aligned_cols=35 Identities=23% Similarity=0.460 Sum_probs=26.2
Q ss_pred CCCCceeecccccCCCCc--eeecc-CCcccCccccCC
Q psy12278 52 DLASLFECPVCFDYVLPP--IIQCQ-SGHLVCSNCRPK 86 (300)
Q Consensus 52 ~l~~~l~CpiC~~~~~~P--i~qC~-~GH~~C~~C~~~ 86 (300)
.|.+.-.|++|...|..- -..|. ||++||+.|-..
T Consensus 157 ~W~~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 157 NWADGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CCCCCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred cCCCCCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 455567899999988643 24785 899999999653
No 102
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=65.58 E-value=2 Score=30.03 Aligned_cols=31 Identities=13% Similarity=0.220 Sum_probs=20.8
Q ss_pred cCCCCceeecccccCCCCceeeccCCcccCcccc
Q psy12278 51 TDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCR 84 (300)
Q Consensus 51 ~~l~~~l~CpiC~~~~~~Pi~qC~~GH~~C~~C~ 84 (300)
..+.+.|.||+|...+.--. ..|-++|..|.
T Consensus 3 ~~LL~iL~CP~ck~~L~~~~---~~~~LiC~~cg 33 (68)
T 2jr6_A 3 KKFLDILVCPVTKGRLEYHQ---DKQELWSRQAK 33 (68)
T ss_dssp CSSSCCCBCSSSCCBCEEET---TTTEEEETTTT
T ss_pred hHHhhheECCCCCCcCeEeC---CCCEEEcCCCC
Confidence 46778999999998665321 24666666553
No 103
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=65.19 E-value=12 Score=27.33 Aligned_cols=88 Identities=20% Similarity=0.338 Sum_probs=54.7
Q ss_pred CCCCCCCCCCCcccchHH--HhhhccccccCCCCCCCceeEecc-CChHHHHHh----CCCCCccCCCCCCCCcccc-cH
Q psy12278 88 SCCPTCRGPLGNIRNLAM--EKVAGTMWFPCRYQMNGCGISLLH-TEKPEHEDT----CEHRPYLCPCPGASCKWGG-AL 159 (300)
Q Consensus 88 ~~Cp~Cr~~~~~~rn~~l--Ek~~~~l~v~C~~~~~GC~~~~~~-~~~~~He~~----C~f~~~~Cp~~~~~C~~~g-~~ 159 (300)
..|+.|...+....++.. ..-...-.+.|+. |...+.. ..+..|+.. =.-.++.|+. |+... ..
T Consensus 8 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~----C~~~f~~~ 79 (124)
T 2dlq_A 8 VECPTCHKKFLSKYYLKVHNRKHTGEKPFECPK----CGKCYFRKENLLEHEARNCMNRSEQVFTCSV----CQETFRRR 79 (124)
T ss_dssp CCCTTTCCCCSSHHHHHHHHHHHSSCCSCBCTT----TCCBCSSHHHHHHHHHHCCCCSCCCCEECSS----SCCEESSH
T ss_pred CCCCCCCCcCCCHHHHHHHHHhCCCCCCeECCC----CCchhcCHHHHHHHHhhhhcCCCCCCeECCC----CCCccCCH
Confidence 579999887754333221 2223345677876 8877754 567889864 3456788985 77665 46
Q ss_pred HHHHHHhhhccCcc-ceecCCceEE
Q psy12278 160 DQVMAHLNQSHKSI-TTLQGEDIVF 183 (300)
Q Consensus 160 ~~l~~Hl~~~H~~~-~~~~g~~~~f 183 (300)
..|..|++..+... ..+..+...|
T Consensus 80 ~~l~~H~~~h~~~~~~~C~~C~~~f 104 (124)
T 2dlq_A 80 MELRLHMVSHTGEMPYKCSSCSQQF 104 (124)
T ss_dssp HHHHHHHHHHSSSCSEECSSSCCEE
T ss_pred HHHHHHHHHcCCCCCccCCCccchh
Confidence 77999998766432 2344454444
No 104
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=62.83 E-value=4.9 Score=28.07 Aligned_cols=29 Identities=17% Similarity=0.416 Sum_probs=22.5
Q ss_pred eeecccccCCCCce--eecc-CCcccCccccC
Q psy12278 57 FECPVCFDYVLPPI--IQCQ-SGHLVCSNCRP 85 (300)
Q Consensus 57 l~CpiC~~~~~~Pi--~qC~-~GH~~C~~C~~ 85 (300)
-.|.+|...|..-. ..|. ||.+||+.|-.
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSC
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccC
Confidence 37999999876432 4785 89999999965
No 105
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Probab=62.35 E-value=39 Score=25.80 Aligned_cols=111 Identities=17% Similarity=0.277 Sum_probs=65.4
Q ss_pred CCceeecccccCCCCce-eeccCCcccCccccCC--------CCCCCCCCCCCCcccchH--HHhhhccccccCCCCCCC
Q psy12278 54 ASLFECPVCFDYVLPPI-IQCQSGHLVCSNCRPK--------LSCCPTCRGPLGNIRNLA--MEKVAGTMWFPCRYQMNG 122 (300)
Q Consensus 54 ~~~l~CpiC~~~~~~Pi-~qC~~GH~~C~~C~~~--------~~~Cp~Cr~~~~~~rn~~--lEk~~~~l~v~C~~~~~G 122 (300)
...+.|++|...+.... ++ .|..-..-... ...|+.|...+.....+. +..-...-.+.|+. .+
T Consensus 23 ~~~~~C~~C~~~f~~~~~L~---~H~~~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--~~ 97 (155)
T 2rpc_A 23 QLSRPKKSCDRTFSTMHELV---THVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPF--PG 97 (155)
T ss_dssp CCSSSCCCCCCCBSSHHHHH---HHHHTTTSCCTTCSSCCCCBTTCTTSSCCCSSHHHHHHHTHHHHCCCSEECSC--TT
T ss_pred hcccccccCCcccCCHHHHH---HHHHhhcCCCcccCCccccccCCCCcccccCCHHHHHHHHHhcCCCCcccCCc--CC
Confidence 45688999999987653 21 22210000000 146999988775433221 12223345577875 26
Q ss_pred ceeEecc-CChHHHHHhC-CCCCccCCCCCCCCccccc-HHHHHHHhhhccC
Q psy12278 123 CGISLLH-TEKPEHEDTC-EHRPYLCPCPGASCKWGGA-LDQVMAHLNQSHK 171 (300)
Q Consensus 123 C~~~~~~-~~~~~He~~C-~f~~~~Cp~~~~~C~~~g~-~~~l~~Hl~~~H~ 171 (300)
|...+.. ..+..|...- .-+++.|+.+ +|+.... ...|..|++..+.
T Consensus 98 C~~~f~~~~~L~~H~~~h~~~~~~~C~~~--~C~k~f~~~~~L~~H~~~H~~ 147 (155)
T 2rpc_A 98 CGKIFARSENLKIHKRTHTGEKPFKCEFE--GCDRRFANSSDRKKHMHVHTS 147 (155)
T ss_dssp TCCEESCHHHHHHHHTTTCSSCSBCCSST--TCCCCBSSHHHHHHSSTTTTS
T ss_pred CCCccCCHHHHHHHHHhhCCCCCccCCCC--CCCCccCCHHHHHHHHHHhcC
Confidence 9888765 4578888642 3467889853 4766654 5679999886553
No 106
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=62.04 E-value=17 Score=26.38 Aligned_cols=35 Identities=20% Similarity=0.409 Sum_probs=25.9
Q ss_pred eeecccccCCCC--ceeeccCCcccCccccCCC-CCCCC
Q psy12278 57 FECPVCFDYVLP--PIIQCQSGHLVCSNCRPKL-SCCPT 92 (300)
Q Consensus 57 l~CpiC~~~~~~--Pi~qC~~GH~~C~~C~~~~-~~Cp~ 92 (300)
-.|..|..-+.- | |+|.||..||+.=+-.. -.|+.
T Consensus 26 ~rC~~C~kkvgl~~~-f~CrCg~~FC~~HRy~e~H~C~f 63 (85)
T 1wff_A 26 KHCFLCGKKTGLATS-FECRCGNNFCASHRYAEAHGCNY 63 (85)
T ss_dssp CBCSSSCCBCSSSSC-EECTTCCEECTTTCSTGGGTCCS
T ss_pred ccchhhCCeecccCC-eEcCCCCEecccCCCccCCCCcc
Confidence 579999986554 5 79999999998776433 35654
No 107
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=61.30 E-value=7.9 Score=32.27 Aligned_cols=41 Identities=24% Similarity=0.509 Sum_probs=28.6
Q ss_pred eecccccCCCCc-----eeecc-CCcccCccccCC---------------CCCCCCCCCCCC
Q psy12278 58 ECPVCFDYVLPP-----IIQCQ-SGHLVCSNCRPK---------------LSCCPTCRGPLG 98 (300)
Q Consensus 58 ~CpiC~~~~~~P-----i~qC~-~GH~~C~~C~~~---------------~~~Cp~Cr~~~~ 98 (300)
.||+|..+..+. +.||. |..++=..|..- ...||.|+..-.
T Consensus 4 ~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~ 65 (183)
T 3lqh_A 4 FCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHP 65 (183)
T ss_dssp BCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSS
T ss_pred cCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCC
Confidence 599999987643 67996 775655556432 248999987654
No 108
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Probab=61.10 E-value=8.3 Score=25.00 Aligned_cols=52 Identities=27% Similarity=0.425 Sum_probs=36.5
Q ss_pred ccccCCCCCCCceeEecc-CChHHHHHh-C--CCCCccCCCCCCCCcccc-cHHHHHHHhhhccC
Q psy12278 112 MWFPCRYQMNGCGISLLH-TEKPEHEDT-C--EHRPYLCPCPGASCKWGG-ALDQVMAHLNQSHK 171 (300)
Q Consensus 112 l~v~C~~~~~GC~~~~~~-~~~~~He~~-C--~f~~~~Cp~~~~~C~~~g-~~~~l~~Hl~~~H~ 171 (300)
-.+.|+. |+..+.. ..+..|... - .-+++.|+. |+... ....|..|++..|.
T Consensus 9 k~~~C~~----C~k~f~~~~~l~~H~~~~H~~~~~~~~C~~----C~k~f~~~~~L~~H~~~~H~ 65 (66)
T 2drp_A 9 HTYRCKV----CSRVYTHISNFCRHYVTSHKRNVKVYPCPF----CFKEFTRKDNMTAHVKIIHK 65 (66)
T ss_dssp TEEECTT----TCCEESSHHHHHHHHHHHSSSSCCCEECTT----TCCEESCHHHHHHHHHHHTC
T ss_pred cceECCC----CcchhCCHHHHHHHHHHHcCCCCcCeECCC----CCCccCCHHHHHHHHHHHcC
Confidence 3566765 8777765 456788765 3 567889985 76655 46679999988775
No 109
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=60.32 E-value=2 Score=33.04 Aligned_cols=44 Identities=23% Similarity=0.441 Sum_probs=34.5
Q ss_pred CceeecccccCCCCceeeccCCcccCccccCCC--CCCCCCCCCCC
Q psy12278 55 SLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL--SCCPTCRGPLG 98 (300)
Q Consensus 55 ~~l~CpiC~~~~~~Pi~qC~~GH~~C~~C~~~~--~~Cp~Cr~~~~ 98 (300)
+=|.|..|...|..--+.-..|..+|..|..++ ..|..|..+|.
T Consensus 29 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~~C~~C~~~I~ 74 (126)
T 2xqn_T 29 KHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHAVVCQGCHNAID 74 (126)
T ss_dssp GGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHSCCBCTTTCSBCC
T ss_pred CCCCcCCCCCCCCcCEEEeECCEEechHHhCcCcCccCcccCCcCC
Confidence 348899999998764444468999999998753 68999998875
No 110
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=60.14 E-value=13 Score=26.60 Aligned_cols=26 Identities=19% Similarity=0.402 Sum_probs=17.9
Q ss_pred CCccCCCCCCCCcccc-cHHHHHHHhhhccC
Q psy12278 142 RPYLCPCPGASCKWGG-ALDQVMAHLNQSHK 171 (300)
Q Consensus 142 ~~~~Cp~~~~~C~~~g-~~~~l~~Hl~~~H~ 171 (300)
+++.|+. |+... ....|..|++..+.
T Consensus 72 ~~~~C~~----C~~~f~~~~~L~~H~~~H~~ 98 (106)
T 2ee8_A 72 KPFKCQE----CGKGFCQSRTLAVHKTLHMQ 98 (106)
T ss_dssp CTTSCSS----SCCCCSSHHHHHHHHHHTTS
T ss_pred CCeECCC----cCCcccCHHHHHHHHHHhCC
Confidence 4677874 66555 46679999876554
No 111
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=59.65 E-value=2.5 Score=29.65 Aligned_cols=30 Identities=27% Similarity=0.514 Sum_probs=20.1
Q ss_pred cCCCCceeecccccCCCCceeeccCCcccCccc
Q psy12278 51 TDLASLFECPVCFDYVLPPIIQCQSGHLVCSNC 83 (300)
Q Consensus 51 ~~l~~~l~CpiC~~~~~~Pi~qC~~GH~~C~~C 83 (300)
..+.+.|.||+|+..+.--. ..|-++|..|
T Consensus 3 ~~LL~iL~CP~ck~~L~~~~---~~~~LiC~~c 32 (70)
T 2js4_A 3 SRLLDILVCPVCKGRLEFQR---AQAELVCNAD 32 (70)
T ss_dssp CCCCCCCBCTTTCCBEEEET---TTTEEEETTT
T ss_pred hHHhhheECCCCCCcCEEeC---CCCEEEcCCC
Confidence 46778999999999664221 2466666555
No 112
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=58.10 E-value=4.7 Score=31.42 Aligned_cols=30 Identities=23% Similarity=0.676 Sum_probs=23.3
Q ss_pred eeecccccCCCCce--eecc-CCcccCccccCC
Q psy12278 57 FECPVCFDYVLPPI--IQCQ-SGHLVCSNCRPK 86 (300)
Q Consensus 57 l~CpiC~~~~~~Pi--~qC~-~GH~~C~~C~~~ 86 (300)
-.|.+|...|..-. ..|. ||++||+.|...
T Consensus 70 ~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 70 QNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 47999999886432 4785 899999999654
No 113
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=57.86 E-value=8.4 Score=25.76 Aligned_cols=34 Identities=21% Similarity=0.505 Sum_probs=23.5
Q ss_pred ccCCCCceeecccccCCCCceeeccCCcccCccccC
Q psy12278 50 STDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRP 85 (300)
Q Consensus 50 ~~~l~~~l~CpiC~~~~~~Pi~qC~~GH~~C~~C~~ 85 (300)
.+.+...+.||.|...- -++.-..|-++|..|-.
T Consensus 5 ~~~ll~~~~Cp~C~~~~--lv~D~~~ge~vC~~CGl 38 (58)
T 1dl6_A 5 RLDALPRVTCPNHPDAI--LVEDYRAGDMICPECGL 38 (58)
T ss_dssp SCCCCSCCSBTTBSSSC--CEECSSSCCEECTTTCC
T ss_pred hhhccccccCcCCCCCc--eeEeCCCCeEEeCCCCC
Confidence 45677788999997632 23333568899988854
No 114
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=57.81 E-value=7.2 Score=26.92 Aligned_cols=38 Identities=16% Similarity=0.382 Sum_probs=26.3
Q ss_pred CceeecccccCCCCceeeccCCcccCccccCCC--CCCCC
Q psy12278 55 SLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL--SCCPT 92 (300)
Q Consensus 55 ~~l~CpiC~~~~~~Pi~qC~~GH~~C~~C~~~~--~~Cp~ 92 (300)
+=|.|..|...|....+.-..|..+|..|..+. ..|..
T Consensus 34 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~~~C~~ 73 (76)
T 1x68_A 34 ECFNCGKCSVSLVGKGFLTQNKEIFCQKCGSGMDTDISGP 73 (76)
T ss_dssp GGCBCTTTCCBCSSSCEEEETTEEEETTTTCCCCCCSSSS
T ss_pred ccCChhhCCCcCCCCceEeECCEEECHHHhhhhhCCcCCC
Confidence 347888998888754444467889999888765 34543
No 115
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}
Probab=57.77 E-value=8.4 Score=25.95 Aligned_cols=73 Identities=19% Similarity=0.445 Sum_probs=39.6
Q ss_pred CCCCCCCCCCcccchH--HHhhhccccccCCCCCCCceeEecc-CChHHHHHh-CCCCCccCCCCCCCCcccc-cHHHHH
Q psy12278 89 CCPTCRGPLGNIRNLA--MEKVAGTMWFPCRYQMNGCGISLLH-TEKPEHEDT-CEHRPYLCPCPGASCKWGG-ALDQVM 163 (300)
Q Consensus 89 ~Cp~Cr~~~~~~rn~~--lEk~~~~l~v~C~~~~~GC~~~~~~-~~~~~He~~-C~f~~~~Cp~~~~~C~~~g-~~~~l~ 163 (300)
.|+.|...+....++. +..-...-.+.|+. |...+.. ..+..|... -.-+++.|+. |+... ....|.
T Consensus 3 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~l~ 74 (82)
T 2kmk_A 3 DCKICGKSFKRSSTLSTHLLIHSDTRPYPCQY----CGKRFHQKSDMKKHTFIHTGEKPHKCQV----CGKAFSQSSNLI 74 (82)
T ss_dssp ECSSSCCEESSHHHHHHHHHHHHTCCCEECSS----SCCEESSHHHHHHHHHHHHTCCCEECTT----TSCEESSHHHHH
T ss_pred cCCCCcccccCchhHHHHHHHcCCCCCeeCCc----CChhhCCHHHHHHHHHHhcCCCCCcCCC----cchhhCChHHHH
Confidence 3666665554322211 11122334566765 7766654 345666642 2346778874 66655 456788
Q ss_pred HHhhhc
Q psy12278 164 AHLNQS 169 (300)
Q Consensus 164 ~Hl~~~ 169 (300)
.|++..
T Consensus 75 ~H~~~H 80 (82)
T 2kmk_A 75 THSRKH 80 (82)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 887653
No 116
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=57.70 E-value=6.9 Score=27.86 Aligned_cols=39 Identities=26% Similarity=0.632 Sum_probs=27.2
Q ss_pred ceeecc--cccCCCC----ceeec------cCCcccCccccCCCCCCCCCCC
Q psy12278 56 LFECPV--CFDYVLP----PIIQC------QSGHLVCSNCRPKLSCCPTCRG 95 (300)
Q Consensus 56 ~l~Cpi--C~~~~~~----Pi~qC------~~GH~~C~~C~~~~~~Cp~Cr~ 95 (300)
..-||. |...+.. +..+| .||+.||..|....-. -.|..
T Consensus 25 ~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~wH~-~~C~~ 75 (80)
T 2jmo_A 25 GVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYHE-GECSA 75 (80)
T ss_dssp SCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEECCS-SCSSS
T ss_pred cEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCccccC-Ccccc
Confidence 456888 8877642 33589 5899999999876533 45644
No 117
>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A
Probab=57.67 E-value=10 Score=25.66 Aligned_cols=55 Identities=22% Similarity=0.487 Sum_probs=32.3
Q ss_pred cccccCCCCCCCceeEecc-CChHHHHHhCCCCCccCCCCCCCCccccc-HHHHHHHhhhcc
Q psy12278 111 TMWFPCRYQMNGCGISLLH-TEKPEHEDTCEHRPYLCPCPGASCKWGGA-LDQVMAHLNQSH 170 (300)
Q Consensus 111 ~l~v~C~~~~~GC~~~~~~-~~~~~He~~C~f~~~~Cp~~~~~C~~~g~-~~~l~~Hl~~~H 170 (300)
...+.|+. .||...+.. ..+..|+..-.- +.|+.+. .|+.... ...|..|++..|
T Consensus 29 ~~~~~C~~--~~C~~~f~~~~~l~~H~~~h~~--~~C~~~~-~C~~~f~~~~~l~~H~~~hh 85 (85)
T 2j7j_A 29 QLPYECPH--EGCDKRFSLPSRLKRHEKVHAG--YPCKKDD-SCSFVGKTWTLYLKHVAECH 85 (85)
T ss_dssp TCCEECCS--TTCCCEESSHHHHHHHHHHHHS--EECCSCS-SCCCEESSHHHHHHHHHHCC
T ss_pred CCCeeCCC--CCCcCccCCHHHHHHHHHHhCC--CCCCCCC-CCCCccCCHHHHHHHHHhcC
Confidence 34566764 368777655 446677653221 6676431 3766664 567888877655
No 118
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=56.89 E-value=2.5 Score=29.55 Aligned_cols=30 Identities=20% Similarity=0.490 Sum_probs=19.4
Q ss_pred cCCCCceeecccccCCCCceeeccCCcccCccc
Q psy12278 51 TDLASLFECPVCFDYVLPPIIQCQSGHLVCSNC 83 (300)
Q Consensus 51 ~~l~~~l~CpiC~~~~~~Pi~qC~~GH~~C~~C 83 (300)
..+.+.|.||+|...+.--. ..|-++|..|
T Consensus 3 ~~LLeiL~CP~ck~~L~~~~---~~~~LiC~~c 32 (69)
T 2pk7_A 3 TKLLDILACPICKGPLKLSA---DKTELISKGA 32 (69)
T ss_dssp CCGGGTCCCTTTCCCCEECT---TSSEEEETTT
T ss_pred hHHHhheeCCCCCCcCeEeC---CCCEEEcCCC
Confidence 35678899999998765221 2355665555
No 119
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=56.80 E-value=2.3 Score=29.63 Aligned_cols=30 Identities=17% Similarity=0.498 Sum_probs=19.4
Q ss_pred cCCCCceeecccccCCCCceeeccCCcccCccc
Q psy12278 51 TDLASLFECPVCFDYVLPPIIQCQSGHLVCSNC 83 (300)
Q Consensus 51 ~~l~~~l~CpiC~~~~~~Pi~qC~~GH~~C~~C 83 (300)
..+.+.|.||+|...+.--. ..|-++|..|
T Consensus 3 ~~LL~iL~CP~ck~~L~~~~---~~~~LiC~~c 32 (68)
T 2hf1_A 3 AKFLEILVCPLCKGPLVFDK---SKDELICKGD 32 (68)
T ss_dssp CCCEEECBCTTTCCBCEEET---TTTEEEETTT
T ss_pred hHHhhheECCCCCCcCeEeC---CCCEEEcCCC
Confidence 35678899999998664321 2466666555
No 120
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=56.61 E-value=8.3 Score=27.75 Aligned_cols=29 Identities=17% Similarity=0.452 Sum_probs=21.1
Q ss_pred eeecccccCCC----Cceeecc-CCcccCccccC
Q psy12278 57 FECPVCFDYVL----PPIIQCQ-SGHLVCSNCRP 85 (300)
Q Consensus 57 l~CpiC~~~~~----~Pi~qC~-~GH~~C~~C~~ 85 (300)
.-||-|...+. .+.++|+ ||+.||..|..
T Consensus 26 ~wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~ 59 (86)
T 2ct7_A 26 LWCAQCSFGFIYEREQLEATCPQCHQTFCVRCKR 59 (86)
T ss_dssp ECCSSSCCCEECCCSCSCEECTTTCCEECSSSCS
T ss_pred eECcCCCchheecCCCCceEeCCCCCccccccCC
Confidence 34999988653 2235896 99999988865
No 121
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=55.42 E-value=14 Score=24.83 Aligned_cols=53 Identities=17% Similarity=0.271 Sum_probs=36.6
Q ss_pred ccccCCCCCCCceeEecc-CChHHHHH-hCC--CCCccCCCCCCCCcccc-cHHHHHHHhhhccCc
Q psy12278 112 MWFPCRYQMNGCGISLLH-TEKPEHED-TCE--HRPYLCPCPGASCKWGG-ALDQVMAHLNQSHKS 172 (300)
Q Consensus 112 l~v~C~~~~~GC~~~~~~-~~~~~He~-~C~--f~~~~Cp~~~~~C~~~g-~~~~l~~Hl~~~H~~ 172 (300)
-.+.|+. |...+.. ..+..|+. .-. -+++.|+. |+... ....|..|++..|..
T Consensus 14 k~~~C~~----C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~----C~~~f~~~~~L~~H~~~~H~~ 71 (77)
T 2ct1_A 14 KPYECYI----CHARFTQSGTMKMHILQKHTENVAKFHCPH----CDTVIARKSDLGVHLRKQHSY 71 (77)
T ss_dssp CSEECTT----TCCEESCHHHHHHHHHHHSSSSCSSEECSS----SSCEESSHHHHHHHHHHTSCC
T ss_pred CCeECCC----cCchhCCHHHHHHHHHHhcCCCCCccCCCC----CCCccCCHHHHHHHHHHhCCC
Confidence 3566765 7776665 45678875 333 26889985 77766 466899999999964
No 122
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=54.25 E-value=9.3 Score=32.75 Aligned_cols=34 Identities=24% Similarity=0.509 Sum_probs=25.0
Q ss_pred CCCCceeecccccCCCCc--eeecc-CCcccCccccC
Q psy12278 52 DLASLFECPVCFDYVLPP--IIQCQ-SGHLVCSNCRP 85 (300)
Q Consensus 52 ~l~~~l~CpiC~~~~~~P--i~qC~-~GH~~C~~C~~ 85 (300)
.|.+.-.|..|...|..- -..|. ||.+||..|-.
T Consensus 160 ~W~~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~ 196 (226)
T 3zyq_A 160 DWVDAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSS 196 (226)
T ss_dssp CCCCCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCC
T ss_pred ccccCCCCcCcCCCCCccccccccCCCcCEeChhhcC
Confidence 344445899999887643 24785 89999999965
No 123
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=54.20 E-value=32 Score=26.20 Aligned_cols=13 Identities=8% Similarity=-0.054 Sum_probs=7.6
Q ss_pred eeecccccCCCCc
Q psy12278 57 FECPVCFDYVLPP 69 (300)
Q Consensus 57 l~CpiC~~~~~~P 69 (300)
+.|++|...+...
T Consensus 4 ~~C~~C~~~f~~~ 16 (155)
T 2gli_A 4 CRWDGCSQEFDSQ 16 (155)
T ss_dssp CCBTTCCCBCSCH
T ss_pred CCcCCCccccCCH
Confidence 4566666666543
No 124
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=52.69 E-value=8.2 Score=27.55 Aligned_cols=30 Identities=23% Similarity=0.657 Sum_probs=23.1
Q ss_pred eeecccccCCCCce--eecc-CCcccCccccCC
Q psy12278 57 FECPVCFDYVLPPI--IQCQ-SGHLVCSNCRPK 86 (300)
Q Consensus 57 l~CpiC~~~~~~Pi--~qC~-~GH~~C~~C~~~ 86 (300)
-.|.+|...|..-. ..|. ||.+||+.|-..
T Consensus 20 ~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 20 THCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred CcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 46999999886432 4785 899999999663
No 125
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=52.53 E-value=3.7 Score=27.42 Aligned_cols=29 Identities=24% Similarity=0.789 Sum_probs=19.9
Q ss_pred ccCCCCceeecccccCCCCceeeccCCcccCc--cc
Q psy12278 50 STDLASLFECPVCFDYVLPPIIQCQSGHLVCS--NC 83 (300)
Q Consensus 50 ~~~l~~~l~CpiC~~~~~~Pi~qC~~GH~~C~--~C 83 (300)
+..+.+.|.||+|+..+.-- .|.++|. .|
T Consensus 4 d~~lL~iL~CP~c~~~L~~~-----~~~L~C~~~~c 34 (56)
T 2kpi_A 4 EAGLLEILACPACHAPLEER-----DAELICTGQDC 34 (56)
T ss_dssp CCSCTTSCCCSSSCSCEEEE-----TTEEEECSSSC
T ss_pred CHHHHhheeCCCCCCcceec-----CCEEEcCCcCC
Confidence 45778899999999965421 1666665 55
No 126
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=51.60 E-value=4.6 Score=27.94 Aligned_cols=43 Identities=14% Similarity=0.207 Sum_probs=30.6
Q ss_pred CceeecccccCCCCceeeccCCcccCc-cccCCC--CCCCCCCCCC
Q psy12278 55 SLFECPVCFDYVLPPIIQCQSGHLVCS-NCRPKL--SCCPTCRGPL 97 (300)
Q Consensus 55 ~~l~CpiC~~~~~~Pi~qC~~GH~~C~-~C~~~~--~~Cp~Cr~~~ 97 (300)
+=|.|..|...|..-.+.-..|..+|. .|..++ ..|..|....
T Consensus 26 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~~~C~~C~~~~ 71 (76)
T 1iml_A 26 PCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFGPKGFGRGGAE 71 (76)
T ss_dssp TTCBCTTTCCBCCTTTEEEETTEEEETTTHHHHHSSCCCSSCCCSS
T ss_pred CCCCccccCccCCCCceECcCCeEeeCHHHHHHHhCccCCCcCCce
Confidence 447899999988764333367899998 597654 5788886543
No 127
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.72 E-value=8.1 Score=26.79 Aligned_cols=29 Identities=21% Similarity=0.306 Sum_probs=24.1
Q ss_pred eeecccccCCCCce---eeccCCcccCccccC
Q psy12278 57 FECPVCFDYVLPPI---IQCQSGHLVCSNCRP 85 (300)
Q Consensus 57 l~CpiC~~~~~~Pi---~qC~~GH~~C~~C~~ 85 (300)
-.|..|..-+.-+- ++|.||.+||+.=+-
T Consensus 16 ~rC~~C~kk~gL~~~egf~CrCg~~FC~~HRy 47 (67)
T 1x4w_A 16 RRCFQCQTKLELVQQELGSCRCGYVFCMLHRL 47 (67)
T ss_dssp TBCSSSCCBCCHHHHHHHCCSSSCCCCTTTCS
T ss_pred CcchhhCCeecccccCceEecCCCEehhccCC
Confidence 47999999988773 799999999987654
No 128
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=49.39 E-value=10 Score=27.36 Aligned_cols=53 Identities=23% Similarity=0.358 Sum_probs=35.9
Q ss_pred ccccCCCCCCCceeEecc-CChHHHHHh-CCCCCccCCCCCCCCccccc-HHHHHHHhhhccCc
Q psy12278 112 MWFPCRYQMNGCGISLLH-TEKPEHEDT-CEHRPYLCPCPGASCKWGGA-LDQVMAHLNQSHKS 172 (300)
Q Consensus 112 l~v~C~~~~~GC~~~~~~-~~~~~He~~-C~f~~~~Cp~~~~~C~~~g~-~~~l~~Hl~~~H~~ 172 (300)
..+.|+. |...+.. ..+..|... -.-+++.|+. |+.... ...|..|++..|+.
T Consensus 36 ~~~~C~~----C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~l~~H~~~~~~~ 91 (110)
T 2csh_A 36 RPYGCGV----CGKKFKMKHHLVGHMKIHTGIKPYECNI----CAKRFMWRDSFHRHVTSCTKS 91 (110)
T ss_dssp CSEECTT----TSCEESSSHHHHHHHTTTCCCCCEECSS----SCCEESCHHHHHHHHHHHHHH
T ss_pred cCccCCC----CCcccCCHHHHHHHHHHcCCCCCeeCCC----CcchhcCHHHHHHHHHHcccc
Confidence 4466765 7766655 346677653 2345788985 776654 67899999998864
No 129
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.83 E-value=9.6 Score=27.28 Aligned_cols=29 Identities=24% Similarity=0.477 Sum_probs=22.3
Q ss_pred eeecccccCCCCce--eecc-CCcccCccccC
Q psy12278 57 FECPVCFDYVLPPI--IQCQ-SGHLVCSNCRP 85 (300)
Q Consensus 57 l~CpiC~~~~~~Pi--~qC~-~GH~~C~~C~~ 85 (300)
-.|.+|...|..-. ..|. ||.+||+.|-.
T Consensus 15 ~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~ 46 (84)
T 1x4u_A 15 GNCTGCSATFSVLKKRRSCSNCGNSFCSRCCS 46 (84)
T ss_dssp SSCSSSCCCCCSSSCCEECSSSCCEECTTTSC
T ss_pred CcCcCcCCccccchhhhhhcCCCcEEChhhcC
Confidence 47999999875432 4785 89999999965
No 130
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=48.76 E-value=11 Score=27.14 Aligned_cols=56 Identities=18% Similarity=0.299 Sum_probs=40.1
Q ss_pred hccccccCCCCCCCceeEe--ccCChHHHHHhCCCCCccCCCCCCCCccccc-HHHHHHHhhhccCc
Q psy12278 109 AGTMWFPCRYQMNGCGISL--LHTEKPEHEDTCEHRPYLCPCPGASCKWGGA-LDQVMAHLNQSHKS 172 (300)
Q Consensus 109 ~~~l~v~C~~~~~GC~~~~--~~~~~~~He~~C~f~~~~Cp~~~~~C~~~g~-~~~l~~Hl~~~H~~ 172 (300)
...-.+.|+. |...+ ....+..|.....-+++.|+. |+.... ...|..|++..|..
T Consensus 30 ~~~~~~~C~~----C~k~F~~~~~~L~~H~~~h~~k~~~C~~----Cgk~F~~~~~L~~H~~~~H~~ 88 (96)
T 2ctd_A 30 VDKGSVSCPT----CQAVGRKTIEGLKKHMENCKQEMFTCHH----CGKQLRSLAGMKYHVMANHNS 88 (96)
T ss_dssp HHTSCEECTT----TCSCEESSHHHHHHHHHHHCCCCCCCSS----SCCCCSSHHHHHHHHHHHTCC
T ss_pred cCCCCcCCCC----CCCCcccCHHHHHHHHHHHCCCCeECCC----CCCeeCCHHHHHHHhHHhcCC
Confidence 3455678886 88888 456788888765667889975 766654 56799996667753
No 131
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=46.68 E-value=11 Score=27.40 Aligned_cols=27 Identities=15% Similarity=0.346 Sum_probs=19.6
Q ss_pred CCccCCCCCCCCcccc-cHHHHHHHhhhccCc
Q psy12278 142 RPYLCPCPGASCKWGG-ALDQVMAHLNQSHKS 172 (300)
Q Consensus 142 ~~~~Cp~~~~~C~~~g-~~~~l~~Hl~~~H~~ 172 (300)
+|+.|+. |+... ....|..|++..|..
T Consensus 79 ~~~~C~~----C~k~f~~~~~L~~H~~~hh~~ 106 (115)
T 2dmi_A 79 KVLKCMY----CGHSFESLQDLSVHMIKTKHY 106 (115)
T ss_dssp SSCBCSS----SCCBCSSHHHHHHHHHHTTTT
T ss_pred cceECCC----CCCccCCHHHHHHHHHHhCCc
Confidence 5678874 76655 466899999888753
No 132
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=44.96 E-value=11 Score=27.51 Aligned_cols=31 Identities=19% Similarity=0.446 Sum_probs=23.1
Q ss_pred ceeecccccCCCCc--eeecc-CCcccCccccCC
Q psy12278 56 LFECPVCFDYVLPP--IIQCQ-SGHLVCSNCRPK 86 (300)
Q Consensus 56 ~l~CpiC~~~~~~P--i~qC~-~GH~~C~~C~~~ 86 (300)
.-.|.+|...|..- -..|. ||++||..|-..
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~ 53 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNR 53 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCcCcCCCCcccchhhCccccCCCCEECCcccCC
Confidence 34799999887532 24785 899999999654
No 133
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=44.79 E-value=6.8 Score=32.11 Aligned_cols=13 Identities=23% Similarity=0.358 Sum_probs=7.0
Q ss_pred eeecccccCCCCc
Q psy12278 57 FECPVCFDYVLPP 69 (300)
Q Consensus 57 l~CpiC~~~~~~P 69 (300)
-.|..|..++.+.
T Consensus 61 ~~C~~C~~~I~~~ 73 (182)
T 2jtn_A 61 PMCAGCDQHILDR 73 (182)
T ss_dssp CBCBTSSSBCCCS
T ss_pred CcCccCCCCccCc
Confidence 4555565555543
No 134
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=44.47 E-value=11 Score=23.50 Aligned_cols=45 Identities=27% Similarity=0.506 Sum_probs=25.5
Q ss_pred ceeEecc-CChHHHHHh-CCCCCccCCCCCCCCcccc-cHHHHHHHhhhccC
Q psy12278 123 CGISLLH-TEKPEHEDT-CEHRPYLCPCPGASCKWGG-ALDQVMAHLNQSHK 171 (300)
Q Consensus 123 C~~~~~~-~~~~~He~~-C~f~~~~Cp~~~~~C~~~g-~~~~l~~Hl~~~H~ 171 (300)
|...+.. ..+..|... -.-+|+.|+. |+... ....|..|++..|+
T Consensus 10 C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~l~~H~~~hh~ 57 (57)
T 3uk3_C 10 CGKFFRSNYYLNIHLRTHTGEKPYKCEF----CEYAAAQKTSLRYHLERHHK 57 (57)
T ss_dssp TCCBCSCHHHHHHHHHHHHCCCCEECSS----SSCEESSHHHHHHHHHHHC-
T ss_pred CcchhCChHHHHHHHHHcCCCCCcCCCC----CcchhCCHHHHHHHHHHhcC
Confidence 5544433 234555442 1235678874 76654 45678888887763
No 135
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=44.41 E-value=15 Score=26.68 Aligned_cols=31 Identities=19% Similarity=0.332 Sum_probs=23.2
Q ss_pred ceeecccccCCCCc--eeecc-CCcccCccccCC
Q psy12278 56 LFECPVCFDYVLPP--IIQCQ-SGHLVCSNCRPK 86 (300)
Q Consensus 56 ~l~CpiC~~~~~~P--i~qC~-~GH~~C~~C~~~ 86 (300)
.-.|.+|...|..- -..|. ||.+||..|-..
T Consensus 9 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 9 ESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred CCCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 34799999987643 24785 899999999653
No 136
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=43.85 E-value=17 Score=24.34 Aligned_cols=53 Identities=23% Similarity=0.391 Sum_probs=35.5
Q ss_pred cccCCCCCCCceeEecc-CChHHHHHhC----CCCCccCCCCCCCCccccc-HHHHHHHhhhccCcc
Q psy12278 113 WFPCRYQMNGCGISLLH-TEKPEHEDTC----EHRPYLCPCPGASCKWGGA-LDQVMAHLNQSHKSI 173 (300)
Q Consensus 113 ~v~C~~~~~GC~~~~~~-~~~~~He~~C----~f~~~~Cp~~~~~C~~~g~-~~~l~~Hl~~~H~~~ 173 (300)
.+.|.. |...+.. ..+..|+..- .-+++.|+. |+.... ...|..|++..|...
T Consensus 7 ~~~C~~----C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~~----C~k~f~~~~~L~~H~~~~H~~~ 65 (78)
T 2d9h_A 7 GLQCEI----CGFTCRQKASLNWHQRKHAETVAALRFPCEF----CGKRFEKPDSVAAHRSKSHPAL 65 (78)
T ss_dssp CEECSS----SCCEESSHHHHHHHHHHHHHHTTTCCEECTT----TCCEESSHHHHHHHHHHTSTTT
T ss_pred CeECCC----CCCeeCCHHHHHHHHHHhhccCCCcccCCCC----CCchhCCHHHHHHHHHHhCCCC
Confidence 455665 7766654 3456666532 257888985 777664 667999999999643
No 137
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=43.66 E-value=5.4 Score=30.51 Aligned_cols=43 Identities=16% Similarity=0.209 Sum_probs=32.1
Q ss_pred ceeecccccCCCC--ceeeccCCcccCccccCCC--C--CCCCCCCCCC
Q psy12278 56 LFECPVCFDYVLP--PIIQCQSGHLVCSNCRPKL--S--CCPTCRGPLG 98 (300)
Q Consensus 56 ~l~CpiC~~~~~~--Pi~qC~~GH~~C~~C~~~~--~--~Cp~Cr~~~~ 98 (300)
=|.|..|...|.+ ..+.-..|..+|..|..+. . .|..|..+|.
T Consensus 32 CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~ 80 (122)
T 1m3v_A 32 CLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGS 80 (122)
T ss_dssp HHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSC
T ss_pred CCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcC
Confidence 3789999999863 2233367899999997753 3 7999988875
No 138
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=42.57 E-value=24 Score=22.10 Aligned_cols=45 Identities=20% Similarity=0.440 Sum_probs=27.9
Q ss_pred ceeEecc-CChHHHHHh-CCCCCccCCCCCCCCcccc-cHHHHHHHhhhccC
Q psy12278 123 CGISLLH-TEKPEHEDT-CEHRPYLCPCPGASCKWGG-ALDQVMAHLNQSHK 171 (300)
Q Consensus 123 C~~~~~~-~~~~~He~~-C~f~~~~Cp~~~~~C~~~g-~~~~l~~Hl~~~H~ 171 (300)
|...+.. ..+..|... -.-+++.|+. |+... ....|..|++..|.
T Consensus 8 C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~l~~H~~~~H~ 55 (60)
T 2adr_A 8 CTRAFARQEHLKRHYRSHTNEKPYPCGL----CNRAFTRRDLLIRHAQKIHS 55 (60)
T ss_dssp TCCCBSCHHHHHHHHHTTTSSCSEECTT----TCCEESSHHHHHHHHTTTSC
T ss_pred CccccCCHHHHHHHHHHhCCCCCccCCC----CCCccCCHHHHHHHHHHHcC
Confidence 5544443 345566543 2335788875 76655 46779999887775
No 139
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=42.42 E-value=9.7 Score=32.98 Aligned_cols=43 Identities=21% Similarity=0.544 Sum_probs=30.4
Q ss_pred CceeecccccCCCCceeecc-CCcccCccccCC------CCCCCCCCCCCC
Q psy12278 55 SLFECPVCFDYVLPPIIQCQ-SGHLVCSNCRPK------LSCCPTCRGPLG 98 (300)
Q Consensus 55 ~~l~CpiC~~~~~~Pi~qC~-~GH~~C~~C~~~------~~~Cp~Cr~~~~ 98 (300)
....|.+|.+++..- ..|+ |+|.+=..|..+ ...||.|+.++.
T Consensus 179 ~i~~C~iC~~iv~~g-~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~ 228 (238)
T 3nw0_A 179 AVKICNICHSLLIQG-QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 228 (238)
T ss_dssp TCCBCTTTCSBCSSC-EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCC
T ss_pred CCCcCcchhhHHhCC-cccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCC
Confidence 467799999999865 5786 565554455532 248999998765
No 140
>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*
Probab=41.57 E-value=15 Score=28.30 Aligned_cols=76 Identities=21% Similarity=0.410 Sum_probs=44.4
Q ss_pred CCCCCCCCCCcccchHHH--hhhccccccCCCCCCCceeEecc-CChHHHHHhC-CCCCccCCCCCCCCcccc-cHHHHH
Q psy12278 89 CCPTCRGPLGNIRNLAME--KVAGTMWFPCRYQMNGCGISLLH-TEKPEHEDTC-EHRPYLCPCPGASCKWGG-ALDQVM 163 (300)
Q Consensus 89 ~Cp~Cr~~~~~~rn~~lE--k~~~~l~v~C~~~~~GC~~~~~~-~~~~~He~~C-~f~~~~Cp~~~~~C~~~g-~~~~l~ 163 (300)
.|+.|...+....++..- .-.+.-++.|.. |+..+.. ..+..|+..= .-+|+.|+. |+... ....|.
T Consensus 24 ~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~----C~k~F~~~~~L~~H~~~H~~~k~~~C~~----C~k~F~~~~~L~ 95 (133)
T 2lt7_A 24 ICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRY----CEKVFPLAEYRTKHEIHHTGERRYQCLA----CGKSFINYQFMS 95 (133)
T ss_dssp EETTTCCEESCHHHHHHHHHHHHCCSCEECSS----SSCEESSHHHHHHHHHHHHTCCCEEESS----SCCEESSHHHHH
T ss_pred ECCCCCCCcCCHHHHHHHHHHcCCCCCeeCCc----cCeecccccchhhhccccCCCccccCCC----CCCCcCCHHHHH
Confidence 466666555432222111 112234566765 7777665 3566776532 336788874 77665 466799
Q ss_pred HHhhhccCc
Q psy12278 164 AHLNQSHKS 172 (300)
Q Consensus 164 ~Hl~~~H~~ 172 (300)
.|++..|..
T Consensus 96 ~H~~~hh~~ 104 (133)
T 2lt7_A 96 SHIKSVHSQ 104 (133)
T ss_dssp HHHHHHTCC
T ss_pred HHhHHhcCC
Confidence 999988853
No 141
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=41.30 E-value=18 Score=26.78 Aligned_cols=47 Identities=28% Similarity=0.617 Sum_probs=35.8
Q ss_pred ccCCCCceeecccccCCCCceeeccCCcccCccccCCC----CCCCCCCCCCC
Q psy12278 50 STDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL----SCCPTCRGPLG 98 (300)
Q Consensus 50 ~~~l~~~l~CpiC~~~~~~Pi~qC~~GH~~C~~C~~~~----~~Cp~Cr~~~~ 98 (300)
+..+..-+.|-.|.-..+.=| .| +.|..|-.|...+ ..||+|..++.
T Consensus 22 d~s~~G~~nCKsCWf~~k~LV-~C-~dHYLCl~CLtlmL~~SdrCpIC~~pLP 72 (99)
T 2ko5_A 22 DATHLGPQFCKSCWFENKGLV-EC-NNHYLCLNCLTLLLSVSNRCPICKMPLP 72 (99)
T ss_dssp SCCCSCCCCCCSSCSCCSSEE-EC-SSCEEEHHHHHHTCSSSSEETTTTEECC
T ss_pred CccccCcccChhhccccCCee-ee-cchhhHHHHHHHHHhhccCCcccCCcCC
Confidence 445556788999988877654 55 5799999997743 57999998864
No 142
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=40.90 E-value=10 Score=21.01 Aligned_cols=24 Identities=21% Similarity=0.454 Sum_probs=15.2
Q ss_pred ccccCCCCCCCceeEeccCChHHHHHhC
Q psy12278 112 MWFPCRYQMNGCGISLLHTEKPEHEDTC 139 (300)
Q Consensus 112 l~v~C~~~~~GC~~~~~~~~~~~He~~C 139 (300)
+.+.||- |...++...+..|...|
T Consensus 5 f~vqcpv----cqq~mpaahin~hldrc 28 (29)
T 3vhs_A 5 FQVQCPV----CQQMMPAAHINSHLDRC 28 (29)
T ss_dssp CEEECTT----TCCEEEGGGHHHHHHHH
T ss_pred eeeeChH----HHHhCcHHHHHHHHhcc
Confidence 4556664 66666666666666655
No 143
>2k5r_A Uncharacterized protein XF2673; solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Xylella fastidiosa TEMECULA1}
Probab=40.81 E-value=12 Score=27.82 Aligned_cols=17 Identities=18% Similarity=0.090 Sum_probs=14.0
Q ss_pred cCCCCceeecccccCCC
Q psy12278 51 TDLASLFECPVCFDYVL 67 (300)
Q Consensus 51 ~~l~~~l~CpiC~~~~~ 67 (300)
..|.+.|.||+|+.++.
T Consensus 3 ~~LLdILaCP~cK~pL~ 19 (97)
T 2k5r_A 3 RKLLHLLCSPDTRQPLS 19 (97)
T ss_dssp TTTCSSCCCCTTSSCCE
T ss_pred hHHhhheECCCCCCccc
Confidence 46788999999998764
No 144
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Probab=40.73 E-value=27 Score=23.76 Aligned_cols=53 Identities=23% Similarity=0.379 Sum_probs=33.5
Q ss_pred ccccccCCCCCCCceeEecc-CChHHHHHh-CCCCCccCCCCCCCCcccc-cHHHHHHHhhhcc
Q psy12278 110 GTMWFPCRYQMNGCGISLLH-TEKPEHEDT-CEHRPYLCPCPGASCKWGG-ALDQVMAHLNQSH 170 (300)
Q Consensus 110 ~~l~v~C~~~~~GC~~~~~~-~~~~~He~~-C~f~~~~Cp~~~~~C~~~g-~~~~l~~Hl~~~H 170 (300)
....+.|+. |...+.. ..+..|... -.-+++.|+. |+... ....|..|++..+
T Consensus 31 ~~~~~~C~~----C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~l~~H~~~H~ 86 (90)
T 1a1h_A 31 GQKPFQCRI----CMRNFSRSDHLTTHIRTHTGEKPFACDI----CGRKFARSDERKRHTKIHL 86 (90)
T ss_dssp CCCCEECTT----TCCEESCHHHHHHHHHHHHCCCCEECTT----TCCEESSHHHHHHHHGGGG
T ss_pred CCCCccCCC----CCcccCCHHHHHHHHHHcCCCCCccCCC----CCchhCCHHHHHHHHHHhc
Confidence 344567775 7776655 346677652 3346788874 76655 4567888987654
No 145
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=40.73 E-value=13 Score=28.78 Aligned_cols=30 Identities=17% Similarity=0.400 Sum_probs=23.6
Q ss_pred eeecccccCCCCce--eecc-CCcccCccccCC
Q psy12278 57 FECPVCFDYVLPPI--IQCQ-SGHLVCSNCRPK 86 (300)
Q Consensus 57 l~CpiC~~~~~~Pi--~qC~-~GH~~C~~C~~~ 86 (300)
-.|..|...|..-. ..|. ||.+||+.|-..
T Consensus 20 ~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~ 52 (120)
T 1y02_A 20 PSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQ 52 (120)
T ss_dssp CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC
T ss_pred CcccCcCCccccccccccCCCCCCeeCHHHhCC
Confidence 47999999886532 4785 899999999764
No 146
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=40.07 E-value=29 Score=21.37 Aligned_cols=45 Identities=24% Similarity=0.548 Sum_probs=26.7
Q ss_pred ceeEecc-CChHHHHHh-CCCCCccCCCCCCCCcccc-cHHHHHHHhhhccC
Q psy12278 123 CGISLLH-TEKPEHEDT-CEHRPYLCPCPGASCKWGG-ALDQVMAHLNQSHK 171 (300)
Q Consensus 123 C~~~~~~-~~~~~He~~-C~f~~~~Cp~~~~~C~~~g-~~~~l~~Hl~~~H~ 171 (300)
|...+.. ..+..|+.. -.-+++.|+. |+... ....|..|++..|.
T Consensus 7 C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~l~~H~~~h~~ 54 (57)
T 1bbo_A 7 CGIRXKKPSMLKKHIRTHTDVRPYHCTY----CNFSFKTKGNLTKHMKSKAH 54 (57)
T ss_dssp TCCBCSSHHHHHHHHHHTSSCCCEECSS----SSCEESSHHHHHHHHHSSSS
T ss_pred CcCcCCCHHHHHHHHHhcCCCCCccCCC----CCchhcCHHHHHHHHHHhcc
Confidence 5544433 345566543 2345778874 76655 45678889876654
No 147
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A
Probab=39.43 E-value=1.6 Score=30.71 Aligned_cols=76 Identities=18% Similarity=0.260 Sum_probs=43.6
Q ss_pred CCCCCCCCCCcccchH--HHhhhccccccCCCCCCCceeEecc-CChHHHHHhCCCCCccCCCCCCCCcccc-cHHHHHH
Q psy12278 89 CCPTCRGPLGNIRNLA--MEKVAGTMWFPCRYQMNGCGISLLH-TEKPEHEDTCEHRPYLCPCPGASCKWGG-ALDQVMA 164 (300)
Q Consensus 89 ~Cp~Cr~~~~~~rn~~--lEk~~~~l~v~C~~~~~GC~~~~~~-~~~~~He~~C~f~~~~Cp~~~~~C~~~g-~~~~l~~ 164 (300)
.|+.|...+....++. +..-...-.+.|+. |...+.. ..+..|.+.---.++.|+. |+... ....|..
T Consensus 5 ~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~----C~k~f~~~~~L~~H~~~h~~~~~~c~~----C~~~f~~~~~L~~ 76 (88)
T 1llm_C 5 QCRICMRNFSRSDHLTTHIRTHTGEKPFACDI----CGRKFARSDERKRHRDIQHILPILEDK----VEELLSKNYHLEN 76 (88)
T ss_dssp ECTTTCCEESCHHHHHHHHHHHHCCCCEECTT----TCCEESSHHHHHHHHHHHTHHHHHHHH----HHHHHHHHHHHHH
T ss_pred cCCCCCCccCCHHHHHHHHHHcCCCCCccCCC----CCCccCCHHHHHHHHHHhCCCcchHHH----HHHHHHHHhhhHH
Confidence 4677766554322211 11223344567775 7777655 4567776544445666763 66544 4557888
Q ss_pred HhhhccCc
Q psy12278 165 HLNQSHKS 172 (300)
Q Consensus 165 Hl~~~H~~ 172 (300)
|++..|+.
T Consensus 77 H~~~~h~~ 84 (88)
T 1llm_C 77 EVARLKKL 84 (88)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88888863
No 148
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=39.35 E-value=30 Score=24.49 Aligned_cols=50 Identities=20% Similarity=0.378 Sum_probs=36.0
Q ss_pred ccCCCCCCCceeEecc-CChHHHHHh-CCCCCccCCCCCCCCcccc-cHHHHHHHhhhccC
Q psy12278 114 FPCRYQMNGCGISLLH-TEKPEHEDT-CEHRPYLCPCPGASCKWGG-ALDQVMAHLNQSHK 171 (300)
Q Consensus 114 v~C~~~~~GC~~~~~~-~~~~~He~~-C~f~~~~Cp~~~~~C~~~g-~~~~l~~Hl~~~H~ 171 (300)
..|+. |...|.. ..+..|+.. =.-+||.|+. |+... ....|..|++..|.
T Consensus 29 h~C~~----Cgk~F~~~~~L~~H~~~H~~~k~~~C~~----C~k~F~~~~~L~~H~~~~H~ 81 (85)
T 2lv2_A 29 HLCPV----CGESFASKGAQERHLRLLHAAQVFPCKY----CPATFYSSPGLTRHINKCHP 81 (85)
T ss_dssp EECTT----SCCEESSHHHHHHHHHTTSCSSSEECTT----SSCEESSHHHHHHHHHTTCT
T ss_pred EECCC----CCCCcCcHHHHhhhhhhccCCCccCCCC----CCCEeCCHHHHHHhCcccCc
Confidence 45765 7777765 457788753 3457889975 87765 56789999998885
No 149
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=39.19 E-value=26 Score=22.80 Aligned_cols=52 Identities=23% Similarity=0.489 Sum_probs=34.3
Q ss_pred cccCCCCCCCceeEecc-CChHHHHHh-CCCCCccCCCCCCCCcccc-cHHHHHHHhhhccCc
Q psy12278 113 WFPCRYQMNGCGISLLH-TEKPEHEDT-CEHRPYLCPCPGASCKWGG-ALDQVMAHLNQSHKS 172 (300)
Q Consensus 113 ~v~C~~~~~GC~~~~~~-~~~~~He~~-C~f~~~~Cp~~~~~C~~~g-~~~~l~~Hl~~~H~~ 172 (300)
.+.|.. |...+.. ..+..|+.. -.-+++.|+. |+... ....|..|++..|..
T Consensus 9 ~~~C~~----C~k~f~~~~~L~~H~~~H~~~~~~~C~~----C~~~f~~~~~L~~H~~~h~~~ 63 (70)
T 1x5w_A 9 PEKCSE----CSYSCSSKAALRIHERIHCTDRPFKCNY----CSFDTKQPSNLSKHMKKFHGD 63 (70)
T ss_dssp SEECSS----SSCEESSHHHHHHHHGGGCCSCSEECSS----SSCEESSHHHHHHHHHHHHSS
T ss_pred CeECCC----CCcccCCHHHHHHHHHHcCCCCCEeCCC----CCCccCCHHHHHHHHHHHhCC
Confidence 455664 7766654 446677654 2446788975 76666 466799999887753
No 150
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=38.50 E-value=4.9 Score=30.89 Aligned_cols=44 Identities=16% Similarity=0.377 Sum_probs=31.1
Q ss_pred CceeecccccCCCC--ceeeccCCcccCccccCCC--C--CCCCCCCCCC
Q psy12278 55 SLFECPVCFDYVLP--PIIQCQSGHLVCSNCRPKL--S--CCPTCRGPLG 98 (300)
Q Consensus 55 ~~l~CpiC~~~~~~--Pi~qC~~GH~~C~~C~~~~--~--~Cp~Cr~~~~ 98 (300)
+=|.|..|...|.. ..+.-..|..+|..|..++ . .|..|..++.
T Consensus 28 ~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~ 77 (131)
T 2xjy_A 28 DCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIR 77 (131)
T ss_dssp TTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEEC
T ss_pred HHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCccC
Confidence 44788889888853 2244467888998887653 3 6888887764
No 151
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=37.78 E-value=9.7 Score=39.68 Aligned_cols=62 Identities=18% Similarity=0.139 Sum_probs=46.4
Q ss_pred cCCCCceeecccccCCCCceeeccCC-cccCccccCC----CCCCCCCCCCCC---cccchHHHhhhcccc
Q psy12278 51 TDLASLFECPVCFDYVLPPIIQCQSG-HLVCSNCRPK----LSCCPTCRGPLG---NIRNLAMEKVAGTMW 113 (300)
Q Consensus 51 ~~l~~~l~CpiC~~~~~~Pi~qC~~G-H~~C~~C~~~----~~~Cp~Cr~~~~---~~rn~~lEk~~~~l~ 113 (300)
.++.+.|.|||=.++|++||.. +.| +.+=...+.+ ...||.=|.++. .+.|.++...+..+.
T Consensus 886 ~~iP~~F~cPIs~~lM~DPVil-psG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~liPN~~Lk~~I~~w~ 955 (968)
T 3m62_A 886 GDVPDEFLDPLMYTIMKDPVIL-PASKMNIDRSTIKAHLLSDSTDPFNRMPLKLEDVTPNEELRQKILCFK 955 (968)
T ss_dssp CCSCGGGBCTTTCSBCSSEEEC-TTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEECHHHHHHHHHHH
T ss_pred cCCcHHhCCcchhhHHhCCeEc-CCCCEEECHHHHHHHHhcCCCCCCCCCCCCcccccccHHHHHHHHHHH
Confidence 4667899999999999999864 566 5665555553 257998888886 368888887776654
No 152
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=37.58 E-value=8.1 Score=31.23 Aligned_cols=43 Identities=14% Similarity=0.318 Sum_probs=33.1
Q ss_pred CceeecccccCCCCceeeccCCcccCccccCCC--CCCCCCCCCCC
Q psy12278 55 SLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL--SCCPTCRGPLG 98 (300)
Q Consensus 55 ~~l~CpiC~~~~~~Pi~qC~~GH~~C~~C~~~~--~~Cp~Cr~~~~ 98 (300)
+=|.|..|...|..-.+ -..|..+|..|..++ ..|..|..++.
T Consensus 32 ~CF~C~~C~~~L~~~~f-~~~g~~yC~~~y~~~f~~~C~~C~~~I~ 76 (169)
T 2rgt_A 32 KCLKCSDCHVPLAERCF-SRGESVYCKDDFFKRFGTKCAACQLGIP 76 (169)
T ss_dssp TTSBCTTTCCBCCSCCE-ESSSCEECHHHHHHHHSCBCTTTCCBCC
T ss_pred ccCccCCCCCcCCCCCc-ccCCeeeecccccccccccccccccccC
Confidence 44889999998876544 367999999997754 68999988764
No 153
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Probab=37.53 E-value=36 Score=27.07 Aligned_cols=74 Identities=26% Similarity=0.517 Sum_probs=37.5
Q ss_pred CCCCCCCCCCcccchHH--HhhhccccccCCCCCCCceeEecc-CChHHHHHh-CCCCCccCCCCCCCCccccc-HHHHH
Q psy12278 89 CCPTCRGPLGNIRNLAM--EKVAGTMWFPCRYQMNGCGISLLH-TEKPEHEDT-CEHRPYLCPCPGASCKWGGA-LDQVM 163 (300)
Q Consensus 89 ~Cp~Cr~~~~~~rn~~l--Ek~~~~l~v~C~~~~~GC~~~~~~-~~~~~He~~-C~f~~~~Cp~~~~~C~~~g~-~~~l~ 163 (300)
.|+.|...+....++.. ..-.....+.|+. |...+.. ..+..|... -.-+++.|+. |+.... ...|.
T Consensus 79 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~L~ 150 (190)
T 2i13_A 79 KCPECGKSFSQRANLRAHQRTHTGEKPYACPE----CGKSFSQLAHLRAHQRTHTGEKPYKCPE----CGKSFSREDNLH 150 (190)
T ss_dssp ECTTTCCEESCHHHHHHHHHHHHTCCCEECTT----TCCEESSHHHHHHHHHHHHCCCCEECTT----TCCEESCHHHHH
T ss_pred cCcccCCccCCHHHHHHHHHhcCCCCCCcCCC----CCCccCCHHHHHHHHHHhCCCCCeECCC----CCcccCCHHHHH
Confidence 47777555432222111 1112334456664 7666654 345666542 2345667763 655543 45677
Q ss_pred HHhhhcc
Q psy12278 164 AHLNQSH 170 (300)
Q Consensus 164 ~Hl~~~H 170 (300)
.|++..+
T Consensus 151 ~H~~~H~ 157 (190)
T 2i13_A 151 THQRTHT 157 (190)
T ss_dssp HHHHHHH
T ss_pred HHHHhcC
Confidence 7776654
No 154
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Probab=37.36 E-value=24 Score=28.14 Aligned_cols=76 Identities=24% Similarity=0.499 Sum_probs=49.0
Q ss_pred CCCCCCCCCCCcccchH--HHhhhccccccCCCCCCCceeEeccC-ChHHHHHh-CCCCCccCCCCCCCCccccc-HHHH
Q psy12278 88 SCCPTCRGPLGNIRNLA--MEKVAGTMWFPCRYQMNGCGISLLHT-EKPEHEDT-CEHRPYLCPCPGASCKWGGA-LDQV 162 (300)
Q Consensus 88 ~~Cp~Cr~~~~~~rn~~--lEk~~~~l~v~C~~~~~GC~~~~~~~-~~~~He~~-C~f~~~~Cp~~~~~C~~~g~-~~~l 162 (300)
..|+.|...+.....+. +..-.....+.|+. |...+... .+..|+.. -.-+++.|+. |+.... ...|
T Consensus 106 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~L~~H~~~H~~~~~~~C~~----C~~~f~~~~~L 177 (190)
T 2i13_A 106 YACPECGKSFSQLAHLRAHQRTHTGEKPYKCPE----CGKSFSREDNLHTHQRTHTGEKPYKCPE----CGKSFSRRDAL 177 (190)
T ss_dssp EECTTTCCEESSHHHHHHHHHHHHCCCCEECTT----TCCEESCHHHHHHHHHHHHCCCCEECTT----TCCEESSHHHH
T ss_pred CcCCCCCCccCCHHHHHHHHHHhCCCCCeECCC----CCcccCCHHHHHHHHHhcCCCCCeECCC----CCCccCCHHHH
Confidence 36999987765332221 12223445678986 99888764 57888753 3457889985 777664 6679
Q ss_pred HHHhhhccC
Q psy12278 163 MAHLNQSHK 171 (300)
Q Consensus 163 ~~Hl~~~H~ 171 (300)
..|++..+.
T Consensus 178 ~~H~~~H~~ 186 (190)
T 2i13_A 178 NVHQRTHTG 186 (190)
T ss_dssp HHHHTTC--
T ss_pred HHHHHhcCC
Confidence 999886553
No 155
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=37.23 E-value=46 Score=22.94 Aligned_cols=42 Identities=19% Similarity=0.453 Sum_probs=24.8
Q ss_pred CCceeecccccCCCCceeeccC---C-cccCccccCC--C----CCCCCCCCC
Q psy12278 54 ASLFECPVCFDYVLPPIIQCQS---G-HLVCSNCRPK--L----SCCPTCRGP 96 (300)
Q Consensus 54 ~~~l~CpiC~~~~~~Pi~qC~~---G-H~~C~~C~~~--~----~~Cp~Cr~~ 96 (300)
.+...| +|..+-...+++|.+ . .+|=..|..- . -.||.|+..
T Consensus 14 ~~~~~C-~C~~~~~g~MI~CD~~~C~~~wfH~~Cvgl~~~p~g~w~Cp~C~~~ 65 (71)
T 1wen_A 14 NEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQE 65 (71)
T ss_dssp TSCCCS-TTCCCSCSSEECCSCSSCSCCCEETTTTTCSSCCSSCCCCTTTSSC
T ss_pred CCCCEE-ECCCCCCCCEeEeeCCCCCCccEecccCCcCcCCCCCEECCCCCcc
Confidence 456778 899876666778763 2 2333344431 1 358888654
No 156
>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=35.66 E-value=28 Score=24.48 Aligned_cols=28 Identities=29% Similarity=0.534 Sum_probs=21.4
Q ss_pred CCccCCCCCCCCccccc-HHHHHHHhhhccC
Q psy12278 142 RPYLCPCPGASCKWGGA-LDQVMAHLNQSHK 171 (300)
Q Consensus 142 ~~~~Cp~~~~~C~~~g~-~~~l~~Hl~~~H~ 171 (300)
+||.|+.+ +|+.... ...|..|++..|.
T Consensus 26 KPYkC~~~--~CgKaFsr~s~L~~H~rriHT 54 (73)
T 1x3c_A 26 RPYRCVHQ--GCFAAFTIQQNLILHYQAVHK 54 (73)
T ss_dssp CSCBCCST--TCCCBCSSHHHHHHHHHHHSS
T ss_pred CCeECCCC--CcChhHcCHHHHHHHhhhhCC
Confidence 68999875 5887775 6679999876674
No 157
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=35.66 E-value=19 Score=33.17 Aligned_cols=38 Identities=13% Similarity=0.290 Sum_probs=28.4
Q ss_pred CCceeecccccCCCC---ceeecc-CCcccCccccCCCCCCC
Q psy12278 54 ASLFECPVCFDYVLP---PIIQCQ-SGHLVCSNCRPKLSCCP 91 (300)
Q Consensus 54 ~~~l~CpiC~~~~~~---Pi~qC~-~GH~~C~~C~~~~~~Cp 91 (300)
...-.|..|...+.. .-++|. ||..+|..|..+...|+
T Consensus 355 ~~~t~C~~C~~~~~g~~~qg~~C~~C~~~~h~~C~~~~~~C~ 396 (406)
T 2vrw_B 355 EETTSCKACQMLLRGTFYQGYRCYRCRAPAHKECLGRVPPCG 396 (406)
T ss_dssp SSCCBCTTTCCBCCSSSSCEEEETTTCCEECGGGGGGSCCC-
T ss_pred CCCCCCccccchhceeCCCCCCCCCCcCccchhhhhhCCCCC
Confidence 345679999998853 336796 99999999988776443
No 158
>2vy4_A U11/U12 small nuclear ribonucleoprotein 48 kDa protein; splicing, mRNA processing, alternative splicing, transcription, nucleus, spliceosome; NMR {Homo sapiens} SCOP: g.37.1.7 PDB: 2vy5_A
Probab=35.28 E-value=15 Score=22.20 Aligned_cols=24 Identities=17% Similarity=0.476 Sum_probs=11.7
Q ss_pred ccCCCCCCCceeEeccCChHHHHHhCC
Q psy12278 114 FPCRYQMNGCGISLLHTEKPEHEDTCE 140 (300)
Q Consensus 114 v~C~~~~~GC~~~~~~~~~~~He~~C~ 140 (300)
+.|||. ..-.++...+..|...|.
T Consensus 6 v~CPyd---~~H~i~~~~l~~Hl~kC~ 29 (37)
T 2vy4_A 6 VICPYD---SNHHMPKSSLAKHMASCR 29 (37)
T ss_dssp EECTTT---SSCEECGGGHHHHHHHHH
T ss_pred EECCCC---CCeEeCHHHHHHHHHHHh
Confidence 445542 444555555555555443
No 159
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.44 E-value=21 Score=24.71 Aligned_cols=33 Identities=24% Similarity=0.592 Sum_probs=22.0
Q ss_pred CceeecccccCCCCceeeccCCcccCccccCCC
Q psy12278 55 SLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL 87 (300)
Q Consensus 55 ~~l~CpiC~~~~~~Pi~qC~~GH~~C~~C~~~~ 87 (300)
+=|.|..|...|..-.+.-..|..+|..|..++
T Consensus 42 ~CF~C~~C~~~L~~~~f~~~~~~~~C~~c~~~~ 74 (82)
T 2ehe_A 42 GCFRCCRCQRSLADEPFTCQDSELLCNDCYCSA 74 (82)
T ss_dssp TTSBCTTTCCBCSSCCEEEETTEEEETTTSSCC
T ss_pred cCCeecCCCCccCCCccEeeCCEEECHHHHhhh
Confidence 337788888877654343356778888877654
No 160
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.16 E-value=7.3 Score=26.42 Aligned_cols=30 Identities=17% Similarity=0.382 Sum_probs=16.4
Q ss_pred eeecccccCCCCceeeccCCcccCccccCC
Q psy12278 57 FECPVCFDYVLPPIIQCQSGHLVCSNCRPK 86 (300)
Q Consensus 57 l~CpiC~~~~~~Pi~qC~~GH~~C~~C~~~ 86 (300)
|.|..|...|..-.+.-..|..+|..|..+
T Consensus 34 F~C~~C~~~L~~~~~~~~~~~~yC~~cy~~ 63 (72)
T 1x61_A 34 FVCSTCRAQLRGQHFYAVERRAYCEGCYVA 63 (72)
T ss_dssp CBCSSSCCBCTTSCEEESSSCEEEHHHHHH
T ss_pred CcccccCCcCCcCcCEeeCCeEECHHHHHH
Confidence 566666666644323334566666666543
No 161
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=34.03 E-value=20 Score=29.27 Aligned_cols=9 Identities=44% Similarity=1.383 Sum_probs=6.8
Q ss_pred CCCCCCCCC
Q psy12278 88 SCCPTCRGP 96 (300)
Q Consensus 88 ~~Cp~Cr~~ 96 (300)
..||.|..+
T Consensus 154 ~~CP~Cg~~ 162 (170)
T 3pwf_A 154 EYCPVCGAP 162 (170)
T ss_dssp SBCTTTCCB
T ss_pred CCCCCCCCC
Confidence 379999765
No 162
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.93 E-value=13 Score=25.12 Aligned_cols=32 Identities=16% Similarity=0.499 Sum_probs=19.2
Q ss_pred ceeecccccCCCCceeeccCCcccCccccCCC
Q psy12278 56 LFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL 87 (300)
Q Consensus 56 ~l~CpiC~~~~~~Pi~qC~~GH~~C~~C~~~~ 87 (300)
=|.|..|...|....+.-..|..+|..|..++
T Consensus 35 CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~ 66 (72)
T 1x4l_A 35 CFNCKKCSLSLVGRGFLTERDDILCPDCGKDI 66 (72)
T ss_dssp TCBCSSSCCBCTTSCCEECSSSEECHHHHHTC
T ss_pred cCEeccCCCcCCCCccEeECCEEEChhHcCcc
Confidence 36677777766544333356677777775543
No 163
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=32.30 E-value=41 Score=22.01 Aligned_cols=52 Identities=17% Similarity=0.333 Sum_probs=32.8
Q ss_pred ccccCCCCCCCceeEecc-CChHHHHHh-CCCCCccCCCCCCCCcccc-cHHHHHHHhhhccC
Q psy12278 112 MWFPCRYQMNGCGISLLH-TEKPEHEDT-CEHRPYLCPCPGASCKWGG-ALDQVMAHLNQSHK 171 (300)
Q Consensus 112 l~v~C~~~~~GC~~~~~~-~~~~~He~~-C~f~~~~Cp~~~~~C~~~g-~~~~l~~Hl~~~H~ 171 (300)
-.+.|+. |...+.. ..+..|+.. -.-+++.|+. |+... ....|..|++..+.
T Consensus 13 k~~~C~~----C~k~f~~~~~L~~H~~~h~~~~~~~C~~----C~~~f~~~~~L~~H~~~H~~ 67 (72)
T 1x6e_A 13 KPYGCVE----CGKAFSRSSILVQHQRVHTGEKPYKCLE----CGKAFSQNSGLINHQRIHTS 67 (72)
T ss_dssp CCEECSS----SCCEESSHHHHHHHHHGGGCSCCEECSS----SCCEESSHHHHHHHHHHHHS
T ss_pred CCccCCC----CCCccCCHHHHHHHHHhcCCCCCeECCC----CCcccCCHHHHHHHHHhcCC
Confidence 3456665 7766654 346677653 2346788875 76665 45678899876543
No 164
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}
Probab=32.04 E-value=58 Score=21.09 Aligned_cols=51 Identities=24% Similarity=0.490 Sum_probs=33.1
Q ss_pred cccCCCCCCCceeEecc-CChHHHHHh-CCCCCccCCCCCCCCccccc-HHHHHHHhh
Q psy12278 113 WFPCRYQMNGCGISLLH-TEKPEHEDT-CEHRPYLCPCPGASCKWGGA-LDQVMAHLN 167 (300)
Q Consensus 113 ~v~C~~~~~GC~~~~~~-~~~~~He~~-C~f~~~~Cp~~~~~C~~~g~-~~~l~~Hl~ 167 (300)
.+.|.. .||...+.. ..+..|+.. -.-+++.|+.. .|+.... ...|..|++
T Consensus 17 ~~~C~~--~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~--~C~k~f~~~~~l~~H~~ 70 (72)
T 2epa_A 17 SHICSH--PGCGKTYFKSSHLKAHTRTHTGEKPFSCSWK--GCERRFARSDELSRHRR 70 (72)
T ss_dssp CEECSS--TTTCCEESSHHHHHHHHHHHSSSCSEECCCT--TCCCEESSHHHHHHHTT
T ss_pred ceeCCC--CCCccccCCHHHHHHHHHhcCCCCCccCCCC--CCCcccCCHHHHHhHhh
Confidence 456765 368877765 456777653 45578889753 4766654 566788865
No 165
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=31.81 E-value=28 Score=26.28 Aligned_cols=25 Identities=28% Similarity=0.574 Sum_probs=16.3
Q ss_pred ecc-CCcccCccccCCCCCCCCCCCCC
Q psy12278 72 QCQ-SGHLVCSNCRPKLSCCPTCRGPL 97 (300)
Q Consensus 72 qC~-~GH~~C~~C~~~~~~Cp~Cr~~~ 97 (300)
.|. ||+.|+ .=..+...||.|+...
T Consensus 69 ~C~~CG~~F~-~~~~kPsrCP~CkSe~ 94 (105)
T 2gmg_A 69 QCRKCGFVFK-AEINIPSRCPKCKSEW 94 (105)
T ss_dssp BBTTTCCBCC-CCSSCCSSCSSSCCCC
T ss_pred ChhhCcCeec-ccCCCCCCCcCCCCCc
Confidence 674 899881 1122346899998764
No 166
>2l7x_A Envelope glycoprotein; cytoplasmic tail, viral protein; NMR {Crimean-congo hemorrhagic fever virus}
Probab=29.13 E-value=30 Score=24.08 Aligned_cols=38 Identities=24% Similarity=0.418 Sum_probs=26.2
Q ss_pred cCChHHHHHhCCCCCccCCCCCCCCcccccHHHHHHHhhhccCc
Q psy12278 129 HTEKPEHEDTCEHRPYLCPCPGASCKWGGALDQVMAHLNQSHKS 172 (300)
Q Consensus 129 ~~~~~~He~~C~f~~~~Cp~~~~~C~~~g~~~~l~~Hl~~~H~~ 172 (300)
..+.+-|+.+|.|.. ||+ |.-..+-+-|..|.-.+-+.
T Consensus 18 ~~DqelHdlnCs~Ni--CPY----C~nRls~eGl~RHV~~CPKR 55 (77)
T 2l7x_A 18 AIDAEMHDLNCSYNI--CPY----CASRLTSDGLARHVTQCPKR 55 (77)
T ss_dssp HHHHHHHHHHHTTTC--CTT----TCCCCCTTTHHHHHTTCSHH
T ss_pred HHHHHHHHcCCCccc--Chh----hhccCCccchhhhcccCccH
Confidence 345567888888875 776 66666777788887776653
No 167
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Probab=28.70 E-value=59 Score=23.88 Aligned_cols=54 Identities=20% Similarity=0.409 Sum_probs=39.0
Q ss_pred ccccccCCCCCCCceeEecc-CChHHHHHhCCCCCccCCCCCCCCcccc-cHHHHHHHhhhccCc
Q psy12278 110 GTMWFPCRYQMNGCGISLLH-TEKPEHEDTCEHRPYLCPCPGASCKWGG-ALDQVMAHLNQSHKS 172 (300)
Q Consensus 110 ~~l~v~C~~~~~GC~~~~~~-~~~~~He~~C~f~~~~Cp~~~~~C~~~g-~~~~l~~Hl~~~H~~ 172 (300)
+.-++.|.. |...+.. ..+..|...= -+|+.|+. |+... ....|..|++..|..
T Consensus 71 ~~~~~~C~~----C~k~f~~~~~l~~H~~~H-~~~~~C~~----C~k~f~~~~~l~~H~~~h~~~ 126 (129)
T 2wbt_A 71 AISQFVCPL----CLMPFSSSVSLKQHIRYT-EHTKVCPV----CKKEFTSTDSALDHVCKKHNI 126 (129)
T ss_dssp HHCSEECTT----TCCEESSHHHHHHHHHHT-CCCCBCTT----TCCBCSSHHHHHHHHHHTTCC
T ss_pred CCCCeECCC----CCcccCCHhHHHHHHHHC-CCCCCCCC----CCcccCCHHHHHHHHHHHCCc
Confidence 345677876 8887766 4577887654 57888975 76665 456799999988865
No 168
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}
Probab=28.64 E-value=68 Score=22.06 Aligned_cols=51 Identities=20% Similarity=0.526 Sum_probs=29.2
Q ss_pred cccCCCCCCCceeEecc-CChHHHHH-hCCCCCccCCCCCCCCcccc-cHHHHHHHhhhc
Q psy12278 113 WFPCRYQMNGCGISLLH-TEKPEHED-TCEHRPYLCPCPGASCKWGG-ALDQVMAHLNQS 169 (300)
Q Consensus 113 ~v~C~~~~~GC~~~~~~-~~~~~He~-~C~f~~~~Cp~~~~~C~~~g-~~~~l~~Hl~~~ 169 (300)
.+.|++. +|...+.. ..+..|+. .-.-+++.|+. |+... ....|..|++..
T Consensus 45 ~~~C~~~--~C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~l~~H~~~H 98 (100)
T 2ebt_A 45 PYKCTWE--GCDWRFARSDELTRHYRKHTGAKPFQCGV----CNRSFSRSDHLALHMKRH 98 (100)
T ss_dssp CEECCSS--SCCCEESSHHHHHHHHHHHTSCCSCBCSS----SCCBCSSHHHHHHHHHHH
T ss_pred CeeCCCC--CCCCccCCHHHHHHHHHHhCCCCCeECCC----CcCccCCHHHHHHHHHHh
Confidence 3555431 36655544 34566654 23446778875 66555 456788887653
No 169
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=27.86 E-value=5.3 Score=33.03 Aligned_cols=44 Identities=20% Similarity=0.479 Sum_probs=31.1
Q ss_pred CceeecccccCCCC--ceeeccCCcccCccccCCC--C--CCCCCCCCCC
Q psy12278 55 SLFECPVCFDYVLP--PIIQCQSGHLVCSNCRPKL--S--CCPTCRGPLG 98 (300)
Q Consensus 55 ~~l~CpiC~~~~~~--Pi~qC~~GH~~C~~C~~~~--~--~Cp~Cr~~~~ 98 (300)
+=|.|..|...|.. ..+.-..|..+|..|..++ . .|..|..++.
T Consensus 31 ~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~~~~C~~C~~~I~ 80 (188)
T 1rut_X 31 RCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQSIP 80 (188)
T ss_dssp GGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSCCEECTTTCCEEC
T ss_pred cCcccCCCCcccccCCceEEEeCCccccccccccccccCCccccCCCccc
Confidence 34788888888864 2334467889999887653 3 5888887764
No 170
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.57 E-value=14 Score=26.46 Aligned_cols=54 Identities=15% Similarity=0.266 Sum_probs=34.7
Q ss_pred cccccCCCCCCCceeEec-c-CChHHHHHhCC--CCCccCCCCCCCCcccc-cHHHHHHHhhhccCc
Q psy12278 111 TMWFPCRYQMNGCGISLL-H-TEKPEHEDTCE--HRPYLCPCPGASCKWGG-ALDQVMAHLNQSHKS 172 (300)
Q Consensus 111 ~l~v~C~~~~~GC~~~~~-~-~~~~~He~~C~--f~~~~Cp~~~~~C~~~g-~~~~l~~Hl~~~H~~ 172 (300)
.-.+.|.. |...+. . ..+..|..... -++|.|+. |+... ....|..|++..|..
T Consensus 22 ~~~~~C~~----C~k~f~~~~~~L~~H~~~h~~~~~~~~C~~----C~k~F~~~~~L~~H~~~h~~~ 80 (98)
T 2gqj_A 22 RGEAVCPT----CNVVTRKTLVGLKKHMEVCQKLQDALKCQH----CRKQFKSKAGLNYHTMAEHSA 80 (98)
T ss_dssp TSCCCCTT----TCCCCSSCSHHHHHHHHHHHHHHHHHSCSS----SCCCCSCHHHHHHHHHHHSCS
T ss_pred CCCcCCCC----CCCChhhhHHHHHHHHHHHcCCCCCEECCC----CCCccCCHHHHHHHHHHHcCC
Confidence 34566765 777665 3 35666665322 35778875 76655 466899999888854
No 171
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=27.00 E-value=64 Score=21.46 Aligned_cols=53 Identities=11% Similarity=0.238 Sum_probs=33.7
Q ss_pred ccccCCCCCCCceeEecc-CChHHHHHh-CCC----CCccCCCCCCCCcccc-cHHHHHHHhhhccCc
Q psy12278 112 MWFPCRYQMNGCGISLLH-TEKPEHEDT-CEH----RPYLCPCPGASCKWGG-ALDQVMAHLNQSHKS 172 (300)
Q Consensus 112 l~v~C~~~~~GC~~~~~~-~~~~~He~~-C~f----~~~~Cp~~~~~C~~~g-~~~~l~~Hl~~~H~~ 172 (300)
-.+.|.. |...+.. ..+..|... -.- +++.|+. |+... ....|..|++..|..
T Consensus 14 k~~~C~~----C~~~f~~~~~l~~H~~~~~~~~~~~~~~~C~~----C~~~f~~~~~L~~H~~~h~~~ 73 (86)
T 1x6h_A 14 KPYACSH----CDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSK----CGKTFTRRNTMARHADNCAGP 73 (86)
T ss_dssp CCEECSS----SSCEESSHHHHHHHHHHTTCSSCCCCCEECSS----SCCEESCHHHHHHHHHHCCCC
T ss_pred CCCcCCC----CCCccCCHHHHHHHHHHhcCCcCCCcceECCC----CCChhCCHHHHHHHHHHccCC
Confidence 3456665 7766655 346677642 222 5688874 76665 466789999887754
No 172
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=26.75 E-value=29 Score=25.40 Aligned_cols=42 Identities=24% Similarity=0.606 Sum_probs=29.9
Q ss_pred eeecccccCCCC-----ceeecc-CCcccCccccCC-----CCCCCCCCCCCC
Q psy12278 57 FECPVCFDYVLP-----PIIQCQ-SGHLVCSNCRPK-----LSCCPTCRGPLG 98 (300)
Q Consensus 57 l~CpiC~~~~~~-----Pi~qC~-~GH~~C~~C~~~-----~~~Cp~Cr~~~~ 98 (300)
-.|.||.+-+-. +..-|. |+--+|..|.+- ...||.|++++.
T Consensus 17 qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 17 QFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp CBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 579999987532 333563 677888888652 358999998874
No 173
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=26.63 E-value=13 Score=25.45 Aligned_cols=11 Identities=18% Similarity=0.522 Sum_probs=6.8
Q ss_pred eecccccCCCC
Q psy12278 58 ECPVCFDYVLP 68 (300)
Q Consensus 58 ~CpiC~~~~~~ 68 (300)
.|+.|..++.+
T Consensus 17 ~C~~C~~~I~~ 27 (77)
T 2egq_A 17 KCAGCKNPITG 27 (77)
T ss_dssp CCSSSCCCCCC
T ss_pred cCcccCCcccC
Confidence 46666666664
No 174
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=26.42 E-value=46 Score=21.63 Aligned_cols=29 Identities=17% Similarity=0.415 Sum_probs=21.3
Q ss_pred cCCCCceeecccccCCCCceeeccCCcccCccccCC
Q psy12278 51 TDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPK 86 (300)
Q Consensus 51 ~~l~~~l~CpiC~~~~~~Pi~qC~~GH~~C~~C~~~ 86 (300)
+-+++...|+-|. -+.+|+ +.+|..|+..
T Consensus 6 ~~~eD~WkC~~C~-k~N~Pl------~ryC~rCwaL 34 (53)
T 2cr8_A 6 SGSEDEWQCTECK-KFNSPS------KRYCFRCWAL 34 (53)
T ss_dssp SCCSCCEECSSSC-CEECSS------CCBCTTTCCB
T ss_pred CCCcceeeccccc-ccCCCc------cchhHHHHHh
Confidence 3556789999999 466773 4578889874
No 175
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=26.16 E-value=9.8 Score=26.51 Aligned_cols=30 Identities=23% Similarity=0.564 Sum_probs=16.9
Q ss_pred eeecccccCCCCceeeccCCcccCccccCC
Q psy12278 57 FECPVCFDYVLPPIIQCQSGHLVCSNCRPK 86 (300)
Q Consensus 57 l~CpiC~~~~~~Pi~qC~~GH~~C~~C~~~ 86 (300)
|.|..|...|..-.+.-..|..+|..|..+
T Consensus 35 F~C~~C~~~L~~~~~~~~~~~~yC~~cy~~ 64 (81)
T 1a7i_A 35 FLCMVCRKNLDSTTVAIHDAEVYCKSCYGK 64 (81)
T ss_dssp EECSSSCCEECSSCCEEETTEEECSHHHHH
T ss_pred CccCCCCCCCCCCCeEeeCCEEECHHHHHH
Confidence 566666666654323334566666666554
No 176
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=26.08 E-value=17 Score=29.83 Aligned_cols=39 Identities=23% Similarity=0.445 Sum_probs=19.3
Q ss_pred CceeecccccCCCCc-eeeccCCcccCccccCCCCCCCCCCCCCC
Q psy12278 55 SLFECPVCFDYVLPP-IIQCQSGHLVCSNCRPKLSCCPTCRGPLG 98 (300)
Q Consensus 55 ~~l~CpiC~~~~~~P-i~qC~~GH~~C~~C~~~~~~Cp~Cr~~~~ 98 (300)
..-.|+.|...+.+. .+. ..|..+-..| ..|..|+.++.
T Consensus 114 ~~~~C~~C~~~I~~~~~v~-a~~~~~H~~C----F~C~~C~~~L~ 153 (192)
T 1b8t_A 114 GSDGCPRCGQAVYAAEKVI-GAGKSWHKSC----FRCAKCGKSLE 153 (192)
T ss_dssp CCEECTTTSCEECSSSCEE-ETTEEECTTT----CBCTTTCCBCC
T ss_pred CCCcCCCCCCEecCcEEEe-cCCCccchhc----CCccccCCCCC
Confidence 345688888777532 222 2343332233 34555666553
No 177
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=26.07 E-value=18 Score=24.02 Aligned_cols=11 Identities=27% Similarity=0.890 Sum_probs=5.1
Q ss_pred eeecccccCCC
Q psy12278 57 FECPVCFDYVL 67 (300)
Q Consensus 57 l~CpiC~~~~~ 67 (300)
|.|..|...|.
T Consensus 33 F~C~~C~~~L~ 43 (65)
T 2iyb_E 33 FLCSCCSKCLI 43 (65)
T ss_dssp SBCTTTCCBCT
T ss_pred EECCCCCCcCC
Confidence 44444444443
No 178
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=25.83 E-value=32 Score=21.72 Aligned_cols=28 Identities=29% Similarity=0.620 Sum_probs=17.1
Q ss_pred ceeecccccCCCCceeeccCCcccCccccC
Q psy12278 56 LFECPVCFDYVLPPIIQCQSGHLVCSNCRP 85 (300)
Q Consensus 56 ~l~CpiC~~~~~~Pi~qC~~GH~~C~~C~~ 85 (300)
.+.||.|... +-++--..|.++|..|..
T Consensus 5 ~~~CP~C~~~--~l~~d~~~gelvC~~CG~ 32 (50)
T 1pft_A 5 QKVCPACESA--ELIYDPERGEIVCAKCGY 32 (50)
T ss_dssp CCSCTTTSCC--CEEEETTTTEEEESSSCC
T ss_pred cEeCcCCCCc--ceEEcCCCCeEECcccCC
Confidence 4679999762 112322457788887754
No 179
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=25.65 E-value=21 Score=23.59 Aligned_cols=28 Identities=21% Similarity=0.304 Sum_probs=13.6
Q ss_pred eeecccccCCCCceeeccCCcccCcccc
Q psy12278 57 FECPVCFDYVLPPIIQCQSGHLVCSNCR 84 (300)
Q Consensus 57 l~CpiC~~~~~~Pi~qC~~GH~~C~~C~ 84 (300)
|.|..|...|....+.-..|..+|..|.
T Consensus 32 F~C~~C~~~L~~~~~~~~~g~~yC~~~y 59 (66)
T 1nyp_A 32 FVCAKCEKPFLGHRHYERKGLAYCETHY 59 (66)
T ss_dssp CBCTTTCCBCSSSCCEEETTEEECHHHH
T ss_pred CEECCCCCCCCCCceEeECCcEECHHHH
Confidence 5555555555443232234555555553
No 180
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=25.65 E-value=65 Score=21.20 Aligned_cols=44 Identities=25% Similarity=0.516 Sum_probs=25.4
Q ss_pred ceeEecc-CChHHHHHh-CCCCCccCCCCCCCCcccc-cHHHHHHHhhhcc
Q psy12278 123 CGISLLH-TEKPEHEDT-CEHRPYLCPCPGASCKWGG-ALDQVMAHLNQSH 170 (300)
Q Consensus 123 C~~~~~~-~~~~~He~~-C~f~~~~Cp~~~~~C~~~g-~~~~l~~Hl~~~H 170 (300)
|...+.. ..+..|... -.-+++.|+. |+... ....|..|++..+
T Consensus 24 C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~L~~H~~~H~ 70 (77)
T 2cot_A 24 CGKSFSHSSDLSKHRRTHTGEKPYKCDE----CGKAFIQRSHLIGHHRVHT 70 (77)
T ss_dssp SCCBCSCHHHHHHHHTTTCCSCSEECSS----SCCEESSHHHHHHHGGGSC
T ss_pred CCcccCCHHHHHHHHHHcCCCcCeeCCC----CCCccCCHHHHHHHHHHhC
Confidence 5544433 334555542 2235778874 76655 4567888987644
No 181
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A
Probab=25.63 E-value=77 Score=16.30 Aligned_cols=26 Identities=23% Similarity=0.487 Sum_probs=16.7
Q ss_pred CCccCCCCCCCCcccc-cHHHHHHHhhhc
Q psy12278 142 RPYLCPCPGASCKWGG-ALDQVMAHLNQS 169 (300)
Q Consensus 142 ~~~~Cp~~~~~C~~~g-~~~~l~~Hl~~~ 169 (300)
+|+.|+++ .|+... ....|..|++..
T Consensus 1 kp~~C~~~--~C~k~f~~~~~L~~H~~~H 27 (31)
T 1sp2_A 1 RPFMCTWS--YCGKRFTRSDELQRHKRTH 27 (31)
T ss_dssp CCCBCCST--TCCCBCSSHHHHHHHHTTT
T ss_pred CCcCCcCC--CCCcccCCHhHHHHHHHHh
Confidence 36778643 476665 456788887653
No 182
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=25.55 E-value=22 Score=32.08 Aligned_cols=42 Identities=29% Similarity=0.554 Sum_probs=28.5
Q ss_pred CceeecccccCCCCceeec---cCC--cccCccccCC----CCCCCCCCCC
Q psy12278 55 SLFECPVCFDYVLPPIIQC---QSG--HLVCSNCRPK----LSCCPTCRGP 96 (300)
Q Consensus 55 ~~l~CpiC~~~~~~Pi~qC---~~G--H~~C~~C~~~----~~~Cp~Cr~~ 96 (300)
..-.||+|......-++.= ..| +..|+-|-.. ...||.|...
T Consensus 181 ~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 181 SRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred cCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 4568999999876554431 245 5779999553 2589999765
No 183
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=25.44 E-value=71 Score=20.91 Aligned_cols=54 Identities=20% Similarity=0.520 Sum_probs=33.7
Q ss_pred cccCCCCCCCceeEecc-CChHHHHH-h-CCCCCccCCCCCCCCcccc-cHHHHHHHhhhcc
Q psy12278 113 WFPCRYQMNGCGISLLH-TEKPEHED-T-CEHRPYLCPCPGASCKWGG-ALDQVMAHLNQSH 170 (300)
Q Consensus 113 ~v~C~~~~~GC~~~~~~-~~~~~He~-~-C~f~~~~Cp~~~~~C~~~g-~~~~l~~Hl~~~H 170 (300)
.+.|... +|...+.. ..+..|.. . =.-+++.|+.+ +|+... ....|..|++..+
T Consensus 7 ~~~C~~~--~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~--~C~k~f~~~~~L~~H~~~H~ 64 (79)
T 2dlk_A 7 GMPCDFP--GCGRIFSNRQYLNHHKKYQHIHQKSFSCPEP--ACGKSFNFKKHLKEHMKLHS 64 (79)
T ss_dssp SEECSST--TTCCEESSHHHHHHHHHHGGGSCCCEECSCT--TTCCEESSHHHHHHHHHHHH
T ss_pred CccCCCC--CCcCccCCHHHHHHHHHHHhCCCCCeECCCC--CCcCccCCHHHHHHHHHHhC
Confidence 4556542 57777755 45677775 2 24567888753 476655 4567888887644
No 184
>1x4v_A Hypothetical protein LOC130617; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.27 E-value=64 Score=21.86 Aligned_cols=27 Identities=15% Similarity=0.427 Sum_probs=20.2
Q ss_pred ceeecc--cccCCCCceeecc-CCcccCccc
Q psy12278 56 LFECPV--CFDYVLPPIIQCQ-SGHLVCSNC 83 (300)
Q Consensus 56 ~l~Cpi--C~~~~~~Pi~qC~-~GH~~C~~C 83 (300)
.-.|+. |...-..| +.|. ||..||..=
T Consensus 12 ~~~Cs~~~Ck~~~ll~-f~C~~C~~~FC~~H 41 (63)
T 1x4v_A 12 TNKCERAGCRQREMMK-LTCERCSRNFCIKH 41 (63)
T ss_dssp CCCCCSTTCCCCCSSC-CBCSSSCCBCCHHH
T ss_pred CCCCCccCCCCCCccc-eECCCCCcccCccc
Confidence 357888 99775556 5898 999998643
No 185
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Probab=25.22 E-value=65 Score=22.98 Aligned_cols=12 Identities=25% Similarity=0.642 Sum_probs=5.8
Q ss_pred eeecc--cccCCCC
Q psy12278 57 FECPV--CFDYVLP 68 (300)
Q Consensus 57 l~Cpi--C~~~~~~ 68 (300)
+.|++ |...+..
T Consensus 7 ~~C~~~~C~~~f~~ 20 (119)
T 2jp9_A 7 FMCAYPGCNKRYFK 20 (119)
T ss_dssp BCCCSTTSCCCBSC
T ss_pred eeCCCCCCcchhCC
Confidence 44544 5554443
No 186
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.15 E-value=25 Score=23.43 Aligned_cols=31 Identities=19% Similarity=0.410 Sum_probs=19.2
Q ss_pred ceeecccccCCCCceeeccCCcccCccccCC
Q psy12278 56 LFECPVCFDYVLPPIIQCQSGHLVCSNCRPK 86 (300)
Q Consensus 56 ~l~CpiC~~~~~~Pi~qC~~GH~~C~~C~~~ 86 (300)
=|.|..|...|....+.-..|..+|..|..+
T Consensus 31 CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~ 61 (70)
T 2d8z_A 31 CFVCTACRKQLSGQRFTARDDFAYCLNCFCD 61 (70)
T ss_dssp TSBCSSSCCBCTTSCCEESSSSEECHHHHHH
T ss_pred CCccCCCCCcCCcCceEeeCCeEECHHHHHH
Confidence 3667777777754333335677777777654
No 187
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.06 E-value=19 Score=24.60 Aligned_cols=32 Identities=19% Similarity=0.227 Sum_probs=19.3
Q ss_pred CceeecccccCCC-CceeeccCCcccCccccCC
Q psy12278 55 SLFECPVCFDYVL-PPIIQCQSGHLVCSNCRPK 86 (300)
Q Consensus 55 ~~l~CpiC~~~~~-~Pi~qC~~GH~~C~~C~~~ 86 (300)
+=|.|..|...|. ...+.=..|..+|..|..+
T Consensus 30 ~CF~C~~C~~~L~~~~~f~~~~~~~yC~~C~~~ 62 (73)
T 1wig_A 30 SCALCVRCGQMFAEGEEMYLQGSSIWHPACRQA 62 (73)
T ss_dssp TTSCCSSSCCCCCSSCCCEEETTEEECTTHHHH
T ss_pred CcCEeCCCCCCCCCCCeeEeeCCEEEChHHChH
Confidence 3377777777776 3222224577777777654
No 188
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.99 E-value=42 Score=22.89 Aligned_cols=23 Identities=17% Similarity=0.368 Sum_probs=18.9
Q ss_pred CcccCccccCCC--CCCCCCCCCCC
Q psy12278 76 GHLVCSNCRPKL--SCCPTCRGPLG 98 (300)
Q Consensus 76 GH~~C~~C~~~~--~~Cp~Cr~~~~ 98 (300)
|..+|..|..+. ..|+.|..++.
T Consensus 2 g~~yC~~cy~~~~~~~C~~C~~~I~ 26 (80)
T 2cuq_A 2 SSGSSGPCYENKFAPRCARCSKTLT 26 (80)
T ss_dssp CCCSCCCCCCCCSSCCCTTTCCCCC
T ss_pred CcEEcHHHHccccCCcCCCCCCEec
Confidence 678899998865 58999988875
No 189
>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.56 E-value=52 Score=19.32 Aligned_cols=25 Identities=24% Similarity=0.485 Sum_probs=17.8
Q ss_pred CCccCCCCCCCCccccc-HHHHHHHhhh
Q psy12278 142 RPYLCPCPGASCKWGGA-LDQVMAHLNQ 168 (300)
Q Consensus 142 ~~~~Cp~~~~~C~~~g~-~~~l~~Hl~~ 168 (300)
+|+.|+.+ .|++... ...|..|++.
T Consensus 8 kp~~C~~~--~C~k~F~~~~~L~~H~r~ 33 (38)
T 2eln_A 8 ILLKCPTD--GCDYSTPDKYKLQAHLKV 33 (38)
T ss_dssp CCEECSSS--SCCCEESCHHHHHHHHHH
T ss_pred CCCCCCCC--CCCCccCCHHHHHHHHHh
Confidence 67889753 4887764 5678899764
No 190
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=24.52 E-value=34 Score=24.94 Aligned_cols=24 Identities=17% Similarity=0.542 Sum_probs=15.4
Q ss_pred cCCCCceeecccccCCCCceeeccC
Q psy12278 51 TDLASLFECPVCFDYVLPPIIQCQS 75 (300)
Q Consensus 51 ~~l~~~l~CpiC~~~~~~Pi~qC~~ 75 (300)
.+-.+.+.| +|..+-...+++|.+
T Consensus 21 ~~~~~~~yC-iC~~~~~g~MI~CD~ 44 (90)
T 2jmi_A 21 NNNQEEVYC-FCRNVSYGPMVACDN 44 (90)
T ss_dssp ---CCSCCS-TTTCCCSSSEECCCS
T ss_pred CCCCCCcEE-EeCCCCCCCEEEecC
Confidence 344566788 999876666778863
No 191
>2k9h_A Glycoprotein; hantavirus, zinc finger, CCHC, metal binding protein; NMR {Andes virus}
Probab=23.51 E-value=1e+02 Score=20.27 Aligned_cols=38 Identities=18% Similarity=0.280 Sum_probs=26.2
Q ss_pred ccCChHHHHHhCCCCCccCCCCCCCCcccccHHHHHHHhhhc
Q psy12278 128 LHTEKPEHEDTCEHRPYLCPCPGASCKWGGALDQVMAHLNQS 169 (300)
Q Consensus 128 ~~~~~~~He~~C~f~~~~Cp~~~~~C~~~g~~~~l~~Hl~~~ 169 (300)
+..+++.|.++|+-. .||+.-..| ......|..|++.+
T Consensus 15 T~kEl~~H~~sCp~g--qCPYC~~~~--e~tesAlQaHfkvC 52 (57)
T 2k9h_A 15 TAKELESHRQSCING--QCPYCMTIT--EATESALQAHYSIC 52 (57)
T ss_dssp STTTHHHHHHHHTTT--BCTTTCCBC--CSSHHHHHHHHTTC
T ss_pred hHHHHHHHhccCCCC--CCCcccCcC--CcCHHHHHHHHHHh
Confidence 456899999999876 488743333 23556788888765
No 192
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=23.18 E-value=1.9e+02 Score=19.97 Aligned_cols=42 Identities=14% Similarity=0.376 Sum_probs=26.0
Q ss_pred CCCCceeecccccCCCCceeeccCCcccCccccCCCCCCCCCCCCCC
Q psy12278 52 DLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKLSCCPTCRGPLG 98 (300)
Q Consensus 52 ~l~~~l~CpiC~~~~~~Pi~qC~~GH~~C~~C~~~~~~Cp~Cr~~~~ 98 (300)
.....-.|..|.+.+.+.++.. .|..+=..| ..|-.|+.++.
T Consensus 21 ~~~~~~~C~~C~~~I~~~~~~a-~~~~~H~~C----F~C~~C~~~L~ 62 (89)
T 1x64_A 21 SAQRMPLCDKCGSGIVGAVVKA-RDKYRHPEC----FVCADCNLNLK 62 (89)
T ss_dssp CCCSCCBCTTTCCBCCSCCEES-SSCEECTTT----CCCSSSCCCTT
T ss_pred CCCcCCCcccCCCEecccEEEE-CCceECccC----CEecCCCCCCC
Confidence 4445678999999988765442 343332233 45667877764
No 193
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.90 E-value=25 Score=23.47 Aligned_cols=28 Identities=21% Similarity=0.612 Sum_probs=13.1
Q ss_pred eeecccccCCCCceeeccCCcccCcccc
Q psy12278 57 FECPVCFDYVLPPIIQCQSGHLVCSNCR 84 (300)
Q Consensus 57 l~CpiC~~~~~~Pi~qC~~GH~~C~~C~ 84 (300)
|.|..|...|..-.+.-..|..+|..|.
T Consensus 32 F~C~~C~~~L~~~~f~~~~g~~yC~~c~ 59 (70)
T 2d8x_A 32 FRCDLCQEVLADIGFVKNAGRHLCRPCH 59 (70)
T ss_dssp SBCSSSCCBCSSSCCEEETTEEECHHHH
T ss_pred CEeCCCCCcCCCCccEeECCeEECHHHh
Confidence 4555555555443222234555555554
No 194
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=22.83 E-value=44 Score=23.00 Aligned_cols=30 Identities=27% Similarity=0.711 Sum_probs=21.9
Q ss_pred CCceeecccccCCCCceeecc-C-CcccCccccCC
Q psy12278 54 ASLFECPVCFDYVLPPIIQCQ-S-GHLVCSNCRPK 86 (300)
Q Consensus 54 ~~~l~CpiC~~~~~~Pi~qC~-~-GH~~C~~C~~~ 86 (300)
+++.-|-||.+- ..+.|. | |-+||..|+..
T Consensus 6 ee~pWC~ICneD---AtlrC~gCdgDLYC~rC~rE 37 (67)
T 2d8v_A 6 SGLPWCCICNED---ATLRCAGCDGDLYCARCFRE 37 (67)
T ss_dssp CCCSSCTTTCSC---CCEEETTTTSEEECSSHHHH
T ss_pred cCCCeeEEeCCC---CeEEecCCCCceehHHHHHH
Confidence 345568899875 456784 5 88999999763
No 195
>2a25_A Ubiquitin ligase SIAH1; protein-peptide complex, ligase; 2.20A {Homo sapiens} PDB: 2an6_A 1k2f_A
Probab=22.71 E-value=43 Score=27.73 Aligned_cols=46 Identities=13% Similarity=0.104 Sum_probs=21.5
Q ss_pred CCCCCCcccchHHHhhhccccccCCCCCCCceeEeccCChHHHHHh
Q psy12278 93 CRGPLGNIRNLAMEKVAGTMWFPCRYQMNGCGISLLHTEKPEHEDT 138 (300)
Q Consensus 93 Cr~~~~~~rn~~lEk~~~~l~v~C~~~~~GC~~~~~~~~~~~He~~ 138 (300)
|...+....-..-|+...-.+..||.....|.|...+.++..|...
T Consensus 16 C~~~~~y~~~~~He~~C~f~p~~Cp~~g~~C~~~G~~~~l~~H~~~ 61 (193)
T 2a25_A 16 CEITLPHTEKADHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMH 61 (193)
T ss_dssp --------------------CEECCCC--CCCCEECSTTHHHHHHH
T ss_pred CCcccccccccchhhcCCCCCccCCCCCCCCcCCCCHHHHHHHHHH
Confidence 4444433333344667777888999864459999999999999875
No 196
>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A
Probab=22.28 E-value=29 Score=29.48 Aligned_cols=26 Identities=0% Similarity=-0.133 Sum_probs=8.2
Q ss_pred cccCCCCCCCceeEe-----ccCChHHHHHh
Q psy12278 113 WFPCRYQMNGCGISL-----LHTEKPEHEDT 138 (300)
Q Consensus 113 ~v~C~~~~~GC~~~~-----~~~~~~~He~~ 138 (300)
.+.|+|...||...+ +..++++|.+.
T Consensus 9 ~i~c~~~~~gc~~~~~~~~~~r~~~~~h~~~ 39 (228)
T 1flk_A 9 SMKSSVESLQNRVTELESVDKSAGQVARNTG 39 (228)
T ss_dssp ---------------CTTTTTTTTTHHHHHH
T ss_pred heeccccccCceeeccccccchhHHHHHHHH
Confidence 467999999999988 77888888753
No 197
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=22.26 E-value=51 Score=27.32 Aligned_cols=36 Identities=25% Similarity=0.582 Sum_probs=24.3
Q ss_pred ccCCCCceeecccccCCCCceeeccCCcccCccccC
Q psy12278 50 STDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRP 85 (300)
Q Consensus 50 ~~~l~~~l~CpiC~~~~~~Pi~qC~~GH~~C~~C~~ 85 (300)
.+++.....||.|...-..-|+--..|-.+|..|-.
T Consensus 15 ~~~ln~~~~CPECGs~~t~IV~D~erGE~VCsdCGL 50 (197)
T 3k1f_M 15 GPNLNIVLTCPECKVYPPKIVERFSEGDVVCALCGL 50 (197)
T ss_dssp SSCCCCCCCCTTTCCSSCCEEEEGGGTEEEETTTCB
T ss_pred ccccccCeECcCCCCcCCeEEEeCCCCEEEEcCCCC
Confidence 456677789999998332223323569999999954
No 198
>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A
Probab=21.95 E-value=20 Score=30.53 Aligned_cols=27 Identities=4% Similarity=-0.128 Sum_probs=9.0
Q ss_pred CCccCCCCCCCCcccc-----cHHHHHHHhhh
Q psy12278 142 RPYLCPCPGASCKWGG-----ALDQVMAHLNQ 168 (300)
Q Consensus 142 ~~~~Cp~~~~~C~~~g-----~~~~l~~Hl~~ 168 (300)
+.+.||+...+|...+ ++.++.+|+..
T Consensus 8 ~~i~c~~~~~gc~~~~~~~~~~r~~~~~h~~~ 39 (228)
T 1flk_A 8 DSMKSSVESLQNRVTELESVDKSAGQVARNTG 39 (228)
T ss_dssp ----------------CTTTTTTTTTHHHHHH
T ss_pred hheeccccccCceeeccccccchhHHHHHHHH
Confidence 4567888877888888 88888888875
No 199
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=21.90 E-value=19 Score=33.35 Aligned_cols=30 Identities=27% Similarity=0.586 Sum_probs=0.0
Q ss_pred ceeecccccCCCCc--eeecc-CCcccCccccC
Q psy12278 56 LFECPVCFDYVLPP--IIQCQ-SGHLVCSNCRP 85 (300)
Q Consensus 56 ~l~CpiC~~~~~~P--i~qC~-~GH~~C~~C~~ 85 (300)
.-.|+.|...+..- -..|. ||++||..|-.
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~ 407 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSR 407 (434)
T ss_dssp ---------------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCEeehhhCC
Confidence 45799999887633 24675 89999999965
No 200
>1wfe_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=21.33 E-value=57 Score=23.54 Aligned_cols=28 Identities=21% Similarity=0.557 Sum_probs=21.9
Q ss_pred Cceeecc--cccCCCCceeecc-CCcccCccc
Q psy12278 55 SLFECPV--CFDYVLPPIIQCQ-SGHLVCSNC 83 (300)
Q Consensus 55 ~~l~Cpi--C~~~~~~Pi~qC~-~GH~~C~~C 83 (300)
....|+. |......| +.|. ||..||..=
T Consensus 24 ~~~~C~~~~Ck~~~~l~-f~C~~C~~~FC~~H 54 (86)
T 1wfe_A 24 KSYSCSFKGCTDVELVA-VICPYCEKNFCLRH 54 (86)
T ss_dssp CCEECCSTTCCCEESSC-EECTTTCCEECGGG
T ss_pred CCCCCCCcCCCCCCccc-eECCCCCccccccc
Confidence 4578999 99886666 5898 999998643
No 201
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.18 E-value=1.7e+02 Score=20.35 Aligned_cols=38 Identities=16% Similarity=0.371 Sum_probs=22.9
Q ss_pred ceeecccccCCCCceeeccCCcccCccccCCCCCCCCCCCCCC
Q psy12278 56 LFECPVCFDYVLPPIIQCQSGHLVCSNCRPKLSCCPTCRGPLG 98 (300)
Q Consensus 56 ~l~CpiC~~~~~~Pi~qC~~GH~~C~~C~~~~~~Cp~Cr~~~~ 98 (300)
.-.|+.|..++...++. ..|..+=..| ..|..|+.++.
T Consensus 25 ~~~C~~C~~~I~~~~v~-a~~~~~H~~C----F~C~~C~~~L~ 62 (90)
T 2dar_A 25 TPMCAHCNQVIRGPFLV-ALGKSWHPEE----FNCAHCKNTMA 62 (90)
T ss_dssp CCBBSSSCCBCCSCEEE-ETTEEECTTT----CBCSSSCCBCS
T ss_pred CCCCccCCCEecceEEE-ECCccccccC----CccCCCCCCCC
Confidence 45799999988766544 2344333333 35666776664
No 202
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.14 E-value=37 Score=23.06 Aligned_cols=29 Identities=21% Similarity=0.497 Sum_probs=14.2
Q ss_pred eeecccccCCCCceeeccCCcccCc-cccC
Q psy12278 57 FECPVCFDYVLPPIIQCQSGHLVCS-NCRP 85 (300)
Q Consensus 57 l~CpiC~~~~~~Pi~qC~~GH~~C~-~C~~ 85 (300)
|.|..|...|..-.+.-..|..+|. .|..
T Consensus 37 F~C~~C~~~L~~~~~~~~~g~~yC~~~cy~ 66 (76)
T 2cu8_A 37 LKCERCSKTLTPGGHAEHDGKPFCHKPCYA 66 (76)
T ss_dssp CBCSSSCCBCCTTSCEEETTEEECTTTHHH
T ss_pred CCCCCCCCccCCCceEeECCEEecchHHHH
Confidence 5555555555433222234555555 4544
No 203
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=21.14 E-value=45 Score=26.73 Aligned_cols=33 Identities=21% Similarity=0.463 Sum_probs=24.4
Q ss_pred CceeecccccCCC---Cceeecc-CCcccCccccCCC
Q psy12278 55 SLFECPVCFDYVL---PPIIQCQ-SGHLVCSNCRPKL 87 (300)
Q Consensus 55 ~~l~CpiC~~~~~---~Pi~qC~-~GH~~C~~C~~~~ 87 (300)
+.-.|.+|..+|. .+-.+|. |.|.+|..|....
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~~~ 103 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSHAH 103 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEECC
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhccccccc
Confidence 4678999999853 3335784 8999999997543
No 204
>4cpa_I Metallocarboxypeptidase inhibitor; hydrolase (C-terminal peptidase); 2.50A {Solanum tuberosum} SCOP: g.3.2.1 PDB: 1h20_A
Probab=21.03 E-value=35 Score=20.32 Aligned_cols=29 Identities=28% Similarity=0.684 Sum_probs=17.1
Q ss_pred cccccCCCCceeeccCCcccCccccCCCCCC
Q psy12278 60 PVCFDYVLPPIIQCQSGHLVCSNCRPKLSCC 90 (300)
Q Consensus 60 piC~~~~~~Pi~qC~~GH~~C~~C~~~~~~C 90 (300)
|+|..+-+..- -| .|-+||+.|+.-...|
T Consensus 6 ~~C~KPC~T~D-DC-S~gw~CqaC~nfa~TC 34 (38)
T 4cpa_I 6 PICNKPCKTHD-DC-SGAWFCQACWNSARTC 34 (38)
T ss_dssp TTTTCBCSSSS-SS-CCCSSCCEEETTTTEE
T ss_pred cccCCCccCcc-cc-ccchHHHHHHhhcccc
Confidence 45665544321 22 4778999998755433
No 205
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=20.95 E-value=40 Score=22.27 Aligned_cols=44 Identities=16% Similarity=0.295 Sum_probs=25.0
Q ss_pred CceeecccccCCCCce-eeccCCc---ccCccccCC------CCCCCCCCCCCC
Q psy12278 55 SLFECPVCFDYVLPPI-IQCQSGH---LVCSNCRPK------LSCCPTCRGPLG 98 (300)
Q Consensus 55 ~~l~CpiC~~~~~~Pi-~qC~~GH---~~C~~C~~~------~~~Cp~Cr~~~~ 98 (300)
+.-.|.||++-..+|. .-|.|.+ .+=..|..+ ...||.|+.++.
T Consensus 5 ~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 4457999987655553 2344432 222234332 257999987753
No 206
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.84 E-value=54 Score=22.70 Aligned_cols=10 Identities=20% Similarity=0.647 Sum_probs=5.5
Q ss_pred eecccccCCC
Q psy12278 58 ECPVCFDYVL 67 (300)
Q Consensus 58 ~CpiC~~~~~ 67 (300)
.|+.|...+.
T Consensus 17 ~C~~C~~~I~ 26 (82)
T 2co8_A 17 LCALCGEHLY 26 (82)
T ss_dssp BCSSSCCBCC
T ss_pred CCcccCCCcc
Confidence 4666665553
No 207
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A
Probab=20.78 E-value=71 Score=21.40 Aligned_cols=42 Identities=29% Similarity=0.611 Sum_probs=20.3
Q ss_pred CceeEecc-CChHHHHHh-CCCCCccCCCCCCCCcccc-cHHHHHHHhh
Q psy12278 122 GCGISLLH-TEKPEHEDT-CEHRPYLCPCPGASCKWGG-ALDQVMAHLN 167 (300)
Q Consensus 122 GC~~~~~~-~~~~~He~~-C~f~~~~Cp~~~~~C~~~g-~~~~l~~Hl~ 167 (300)
+|...+.. ..+..|... -.-+++.|+. |+... ....|..|++
T Consensus 42 ~C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~l~~H~~ 86 (89)
T 2wbs_A 42 GCGWKFARSDELTRHYRKHTGHRPFQCQK----CDRAFSRSDHLALHMK 86 (89)
T ss_dssp TTCCEESSHHHHHHHHHHHHCCCCEECSS----SSCEESSHHHHHHHGG
T ss_pred CCCCccCCHHHHHHHHHHcCCCCCccCCC----CCcccCCHHHHHHHHH
Confidence 36555543 334555431 2234566653 55444 3445666654
No 208
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=20.75 E-value=73 Score=29.38 Aligned_cols=57 Identities=16% Similarity=0.330 Sum_probs=38.3
Q ss_pred ceeecccccCCCCceeeccCCcccCccccC--------CCCCCCCCCCCCCc---ccchHHHhhhccc
Q psy12278 56 LFECPVCFDYVLPPIIQCQSGHLVCSNCRP--------KLSCCPTCRGPLGN---IRNLAMEKVAGTM 112 (300)
Q Consensus 56 ~l~CpiC~~~~~~Pi~qC~~GH~~C~~C~~--------~~~~Cp~Cr~~~~~---~rn~~lEk~~~~l 112 (300)
-|.||+=...+..|+.--.|.|+-|-.=.. ..-.||.|...+.. .-+..+.+++...
T Consensus 249 SL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~ID~~~~~IL~~~ 316 (371)
T 3i2d_A 249 SLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLAISEFVDDILQNC 316 (371)
T ss_dssp ESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEEEBHHHHHHHTTS
T ss_pred eecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHeeEcHHHHHHHHhc
Confidence 488999999999998765679987655311 22479999887642 2344455555543
Done!