RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12278
(300 letters)
>d1k2fa_ b.8.1.2 (A:) SIAH, seven in absentia homolog {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 190
Score = 227 bits (580), Expect = 1e-75
Identities = 155/184 (84%), Positives = 167/184 (90%)
Query: 114 FPCRYQMNGCGISLLHTEKPEHEDTCEHRPYLCPCPGASCKWGGALDQVMAHLNQSHKSI 173
FPC+Y +GC I+L HTEK EHE+ CE RPY CPCPGASCKW G+LD VM HL HKSI
Sbjct: 4 FPCKYASSGCEITLPHTEKAEHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMHQHKSI 63
Query: 174 TTLQGEDIVFLATDINLPGAVDWVMMQSCFGHHFMLVLEKQEKFDGHQHFFAIVQLIGSR 233
TTLQGEDIVFLATDINLPGAVDWVMMQSCFG HFMLVLEKQEK+DGHQ FFAIVQLIG+R
Sbjct: 64 TTLQGEDIVFLATDINLPGAVDWVMMQSCFGFHFMLVLEKQEKYDGHQQFFAIVQLIGTR 123
Query: 234 KQSENFTYRLELNGHRRRLTWEATPRSIHEGVASAIMNSDCLVFDTNIAQLFADNGNLGI 293
KQ+ENF YRLELNGHRRRLTWEATPRSIHEG+A+AIMNSDCLVFDT+IAQLFA+NGNLGI
Sbjct: 124 KQAENFAYRLELNGHRRRLTWEATPRSIHEGIATAIMNSDCLVFDTSIAQLFAENGNLGI 183
Query: 294 NVTI 297
NVTI
Sbjct: 184 NVTI 187
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine
herpesvirus 1 [TaxId: 10326]}
Length = 68
Score = 38.0 bits (88), Expect = 7e-05
Identities = 10/49 (20%), Positives = 19/49 (38%), Gaps = 4/49 (8%)
Query: 58 ECPVCFDYVLPPIIQCQSGHLVCSNCRPKL----SCCPTCRGPLGNIRN 102
CP+C + + H C C + CP C+ P+ ++ +
Sbjct: 7 RCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVESVVH 55
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 97
Score = 37.5 bits (86), Expect = 2e-04
Identities = 16/65 (24%), Positives = 24/65 (36%), Gaps = 2/65 (3%)
Query: 35 ISPSSSSNSSNSAGTSTDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKL--SCCPT 92
+ P ++S L L C C + + P+ H+ CSNC + CP
Sbjct: 1 MEPDGRGAWAHSRAALDRLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGTGCPV 60
Query: 93 CRGPL 97
C P
Sbjct: 61 CYTPA 65
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein
1 (RAG1), dimerization domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 36.4 bits (84), Expect = 4e-04
Identities = 13/51 (25%), Positives = 18/51 (35%), Gaps = 6/51 (11%)
Query: 52 DLASLFECPVCFDYVLPPIIQCQSGHLVCSNC-----RPKLSCCPTCRGPL 97
C +C + P+ HL C C + S CP+CR P
Sbjct: 19 HFVKSISCQICEHILADPVETS-CKHLFCRICILRCLKVMGSYCPSCRYPC 68
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia
proto-oncoprotein PML {Human (Homo sapiens) [TaxId:
9606]}
Length = 56
Score = 34.5 bits (79), Expect = 9e-04
Identities = 11/41 (26%), Positives = 14/41 (34%), Gaps = 2/41 (4%)
Query: 58 ECPVCFDYVLPPIIQCQSGHLVCSNC-RPKLSCCPTCRGPL 97
C C P + H +CS C CP C+ P
Sbjct: 8 RCQQCQAEAKCPKL-LPCLHTLCSGCLEASGMQCPICQAPW 47
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 103
Score = 35.4 bits (81), Expect = 0.001
Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 6/52 (11%)
Query: 52 DLASLFECPVCFDYVLPPIIQ------CQSGHLVCSNCRPKLSCCPTCRGPL 97
+ + ECP+C + + P+ C+ L N + S CP C+ +
Sbjct: 17 AMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDI 68
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId:
9606]}
Length = 79
Score = 33.8 bits (77), Expect = 0.003
Identities = 12/48 (25%), Positives = 20/48 (41%), Gaps = 6/48 (12%)
Query: 55 SLFECPVCFDYVLPPIIQCQSGHLVCSNC-----RPKLSCCPTCRGPL 97
+ C +C + I GHL+C++C + CP CR +
Sbjct: 22 TFQLCKICAENDKDVKI-EPCGHLMCTSCLTSWQESEGQGCPFCRCEI 68
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens)
[TaxId: 9606]}
Length = 65
Score = 29.0 bits (64), Expect = 0.10
Identities = 12/49 (24%), Positives = 16/49 (32%), Gaps = 9/49 (18%)
Query: 58 ECPVCFDYVLPP----IIQCQSGHLVCSNC-----RPKLSCCPTCRGPL 97
CP C ++ GH +C +C CP C PL
Sbjct: 5 GCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPL 53
>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 56
Score = 28.6 bits (63), Expect = 0.13
Identities = 6/43 (13%), Positives = 12/43 (27%), Gaps = 4/43 (9%)
Query: 59 CPVCFDYVLPPIIQCQSGHLVCSNC----RPKLSCCPTCRGPL 97
C + P++ +S + + P PL
Sbjct: 3 CAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPL 45
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 52
Score = 28.5 bits (63), Expect = 0.14
Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 8/50 (16%)
Query: 58 ECPVCFDYVLPP---IIQCQSGHLVCSNC-----RPKLSCCPTCRGPLGN 99
ECP+C + + C G+ +C C + CP CR P
Sbjct: 2 ECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE 51
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain
{Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8
[TaxId: 37296]}
Length = 60
Score = 26.7 bits (58), Expect = 0.70
Identities = 6/48 (12%), Positives = 11/48 (22%), Gaps = 10/48 (20%)
Query: 59 CPVCFD----YVLPPIIQCQSGHLVCSNC------RPKLSCCPTCRGP 96
C +C + V +C + + C C
Sbjct: 9 CWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVV 56
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa)
[TaxId: 4530]}
Length = 55
Score = 26.4 bits (58), Expect = 0.81
Identities = 12/47 (25%), Positives = 16/47 (34%), Gaps = 7/47 (14%)
Query: 58 ECPVCFDYVLPP---IIQCQSGHLVCSNCRPKL----SCCPTCRGPL 97
EC VC + + GH + C S CP CR +
Sbjct: 7 ECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTV 53
>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing
protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 80
Score = 25.2 bits (54), Expect = 3.7
Identities = 5/45 (11%), Positives = 11/45 (24%), Gaps = 1/45 (2%)
Query: 52 DLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKLSCCPTCRGP 96
D+ + F+ ++ SG + P
Sbjct: 3 DIPDYLCGKISFE-LMREPCITPSGITYDRKDIEEHLQRVGHFNP 46
>d2p5zx2 b.106.1.1 (X:15-201) Hypothetical protein c3393
{Escherichia coli o6 [TaxId: 217992]}
Length = 187
Score = 26.1 bits (57), Expect = 3.9
Identities = 8/41 (19%), Positives = 16/41 (39%)
Query: 216 KFDGHQHFFAIVQLIGSRKQSENFTYRLELNGHRRRLTWEA 256
K G Q ++ G + S F Y ++ + + E+
Sbjct: 4 KIRGLQSPVDVLTFEGREQLSTPFRYDIQFTSSDKAIAPES 44
>d1xu2r_ g.24.1.2 (R:) Tumor necrosis factor receptor superfamily
member 17, BCMA {Human (Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 23.5 bits (50), Expect = 5.1
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 73 CQSGHLVCSNCRPKLSCCPTC 93
C L CS+ P L+C C
Sbjct: 14 CIPCQLRCSSNTPPLTCQRYC 34
>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor
receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}
Length = 299
Score = 26.0 bits (56), Expect = 5.7
Identities = 3/49 (6%), Positives = 11/49 (22%)
Query: 78 LVCSNCRPKLSCCPTCRGPLGNIRNLAMEKVAGTMWFPCRYQMNGCGIS 126
L+ K+ R + + + + + +
Sbjct: 166 LLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYT 214
>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 78
Score = 24.7 bits (53), Expect = 6.1
Identities = 11/64 (17%), Positives = 21/64 (32%), Gaps = 9/64 (14%)
Query: 50 STDLASLFECPVCFDYVLPPIIQCQSGHLVCSNC-----RPKLSCCPTCRGPLGN---IR 101
S + F CP+ + + P+I +G + CP + L +
Sbjct: 2 SPEFPEYFRCPISLELMKDPVI-VSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTP 60
Query: 102 NLAM 105
N +
Sbjct: 61 NYVL 64
>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 264
Score = 25.3 bits (55), Expect = 9.1
Identities = 8/37 (21%), Positives = 15/37 (40%)
Query: 195 DWVMMQSCFGHHFMLVLEKQEKFDGHQHFFAIVQLIG 231
+ V + G + + L +F H+ A +IG
Sbjct: 8 ERVQLTDAKGRRYTMSLTPGAEFHTHRGSIAHDAVIG 44
>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga
maritima [TaxId: 2336]}
Length = 266
Score = 25.1 bits (54), Expect = 9.9
Identities = 9/46 (19%), Positives = 17/46 (36%)
Query: 195 DWVMMQSCFGHHFMLVLEKQEKFDGHQHFFAIVQLIGSRKQSENFT 240
D V++ F++ LEK +K H + ++ T
Sbjct: 15 DRVLLSFEDESEFLVDLEKDKKLHTHLGIIDLNEVFEKGPGEIIRT 60
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.136 0.438
Gapped
Lambda K H
0.267 0.0510 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,132,397
Number of extensions: 51997
Number of successful extensions: 170
Number of sequences better than 10.0: 1
Number of HSP's gapped: 163
Number of HSP's successfully gapped: 28
Length of query: 300
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 215
Effective length of database: 1,240,546
Effective search space: 266717390
Effective search space used: 266717390
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.7 bits)