Query psy1228
Match_columns 202
No_of_seqs 198 out of 1355
Neff 7.3
Searched_HMMs 46136
Date Fri Aug 16 23:15:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1228.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1228hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd05516 Bromo_SNF2L2 Bromodoma 100.0 4.5E-31 9.7E-36 196.1 11.4 107 81-187 1-107 (107)
2 cd05497 Bromo_Brdt_I_like Brom 100.0 7.7E-30 1.7E-34 189.5 12.3 103 79-187 3-107 (107)
3 cd05496 Bromo_WDR9_II Bromodom 100.0 8E-30 1.7E-34 192.5 12.2 105 79-189 3-108 (119)
4 cd05515 Bromo_polybromo_V Brom 100.0 6.3E-30 1.4E-34 189.4 11.0 103 83-185 2-104 (105)
5 cd05525 Bromo_ASH1 Bromodomain 100.0 9.3E-30 2E-34 188.6 11.4 103 81-183 2-104 (106)
6 cd05507 Bromo_brd8_like Bromod 100.0 2.1E-29 4.5E-34 186.3 12.4 102 80-187 2-103 (104)
7 cd05495 Bromo_cbp_like Bromodo 100.0 2.5E-29 5.5E-34 187.0 12.8 102 80-187 2-106 (108)
8 cd05505 Bromo_WSTF_like Bromod 100.0 1.2E-29 2.6E-34 185.3 10.8 96 83-184 2-97 (97)
9 cd05519 Bromo_SNF2 Bromodomain 100.0 1.1E-29 2.4E-34 187.4 10.8 102 82-183 1-102 (103)
10 cd05520 Bromo_polybromo_III Br 100.0 1.8E-29 3.9E-34 186.3 10.9 99 85-183 4-102 (103)
11 cd05518 Bromo_polybromo_IV Bro 100.0 1.8E-29 4E-34 186.2 10.8 101 83-183 2-102 (103)
12 cd05524 Bromo_polybromo_I Brom 100.0 3.3E-29 7.2E-34 187.7 12.1 108 83-190 4-111 (113)
13 cd05517 Bromo_polybromo_II Bro 100.0 2.2E-29 4.7E-34 185.8 10.5 100 83-182 2-101 (103)
14 cd05504 Bromo_Acf1_like Bromod 100.0 7.6E-29 1.7E-33 186.3 13.4 105 79-189 10-114 (115)
15 cd05510 Bromo_SPT7_like Bromod 100.0 1.2E-28 2.7E-33 184.3 12.3 104 79-188 5-110 (112)
16 cd05509 Bromo_gcn5_like Bromod 100.0 1.2E-28 2.6E-33 181.2 11.4 100 82-187 2-101 (101)
17 cd05503 Bromo_BAZ2A_B_like Bro 100.0 9.7E-29 2.1E-33 180.5 10.7 95 84-184 3-97 (97)
18 cd05508 Bromo_RACK7 Bromodomai 100.0 1.5E-28 3.3E-33 180.0 11.4 97 80-183 2-98 (99)
19 cd05502 Bromo_tif1_like Bromod 100.0 3.7E-28 8.1E-33 181.0 13.3 103 80-189 3-108 (109)
20 cd05522 Bromo_Rsc1_2_II Bromod 100.0 2.3E-28 5E-33 180.7 10.8 102 82-183 2-103 (104)
21 cd05513 Bromo_brd7_like Bromod 100.0 3.7E-28 8.1E-33 177.6 10.4 96 81-182 1-96 (98)
22 cd05521 Bromo_Rsc1_2_I Bromodo 100.0 6.5E-28 1.4E-32 178.7 11.4 102 82-185 2-103 (106)
23 cd05528 Bromo_AAA Bromodomain; 100.0 1.4E-27 3.1E-32 178.6 12.6 105 80-190 2-110 (112)
24 cd05499 Bromo_BDF1_2_II Bromod 100.0 8.8E-28 1.9E-32 176.9 11.1 98 84-184 3-102 (102)
25 cd05501 Bromo_SP100C_like Brom 99.9 1.8E-27 4E-32 174.6 11.9 97 84-189 5-101 (102)
26 cd05512 Bromo_brd1_like Bromod 99.9 1E-27 2.2E-32 175.5 10.5 94 81-180 1-94 (98)
27 cd05506 Bromo_plant1 Bromodoma 99.9 1.3E-27 2.9E-32 174.9 10.7 96 83-184 2-99 (99)
28 cd05511 Bromo_TFIID Bromodomai 99.9 8.2E-28 1.8E-32 180.0 8.9 103 83-191 2-104 (112)
29 cd05500 Bromo_BDF1_2_I Bromodo 99.9 3.8E-27 8.2E-32 173.9 12.0 100 79-184 2-103 (103)
30 cd05498 Bromo_Brdt_II_like Bro 99.9 3.4E-27 7.3E-32 173.7 11.4 99 83-184 2-102 (102)
31 KOG1474|consensus 99.9 4.3E-27 9.3E-32 220.9 13.8 112 76-193 217-330 (640)
32 cd05529 Bromo_WDR9_I_like Brom 99.9 1.5E-25 3.2E-30 171.4 13.1 108 76-186 19-127 (128)
33 smart00297 BROMO bromo domain. 99.9 1.2E-25 2.6E-30 165.9 12.1 102 80-187 6-107 (107)
34 cd05526 Bromo_polybromo_VI Bro 99.9 3E-24 6.5E-29 159.3 11.7 105 81-187 3-107 (110)
35 cd04369 Bromodomain Bromodomai 99.9 7.3E-24 1.6E-28 152.4 10.2 98 83-184 2-99 (99)
36 PF00439 Bromodomain: Bromodom 99.9 7.8E-24 1.7E-28 149.7 9.9 84 86-175 1-84 (84)
37 cd05492 Bromo_ZMYND11 Bromodom 99.9 3.3E-23 7.1E-28 153.9 11.2 100 85-189 4-108 (109)
38 COG5076 Transcription factor i 99.9 1.5E-21 3.2E-26 173.4 10.4 115 78-192 139-253 (371)
39 KOG1245|consensus 99.8 4.6E-19 9.9E-24 176.7 9.0 97 86-189 1306-1402(1404)
40 KOG1472|consensus 99.6 7.9E-16 1.7E-20 144.1 6.1 103 79-187 604-706 (720)
41 KOG1827|consensus 99.5 1.7E-13 3.8E-18 126.7 9.2 112 73-184 43-155 (629)
42 KOG0386|consensus 99.4 4.5E-13 9.8E-18 128.1 8.8 106 84-189 1027-1132(1157)
43 KOG0955|consensus 99.3 3.8E-12 8.2E-17 123.9 7.8 107 79-191 563-669 (1051)
44 cd05494 Bromodomain_1 Bromodom 99.3 1.7E-12 3.7E-17 97.4 3.2 77 85-164 4-89 (114)
45 cd05491 Bromo_TBP7_like Bromod 99.3 1.4E-11 3.1E-16 92.1 6.7 41 125-165 62-102 (119)
46 KOG0008|consensus 99.2 2.7E-11 5.9E-16 118.5 5.8 93 86-184 1387-1479(1563)
47 KOG0008|consensus 99.2 5.1E-11 1.1E-15 116.6 7.4 114 80-199 1260-1384(1563)
48 KOG1472|consensus 98.8 2.8E-09 6E-14 100.6 4.5 63 105-167 304-366 (720)
49 KOG1474|consensus 98.6 9.9E-09 2.1E-13 97.2 1.9 96 101-196 6-103 (640)
50 KOG1828|consensus 98.6 6.3E-09 1.4E-13 91.3 -0.5 96 83-184 21-116 (418)
51 KOG1828|consensus 98.4 2.2E-07 4.8E-12 81.7 4.0 86 86-178 213-298 (418)
52 cd05493 Bromo_ALL-1 Bromodomai 97.6 0.00015 3.3E-09 55.4 5.9 69 127-195 59-127 (131)
53 COG5076 Transcription factor i 97.4 5.1E-05 1.1E-09 67.7 1.6 87 103-189 279-365 (371)
54 KOG0644|consensus 95.4 0.011 2.5E-07 57.1 2.9 61 124-184 1050-1110(1113)
55 KOG0732|consensus 88.7 0.18 3.9E-06 50.5 0.9 62 105-166 533-601 (1080)
56 KOG0644|consensus 88.0 0.14 3E-06 49.9 -0.2 75 107-182 85-189 (1113)
57 KOG1827|consensus 85.6 0.086 1.9E-06 50.0 -3.0 75 105-179 213-287 (629)
58 TIGR02606 antidote_CC2985 puta 77.8 3.9 8.5E-05 27.6 3.7 28 131-158 12-39 (69)
59 PF14372 DUF4413: Domain of un 74.6 18 0.00039 26.1 6.7 49 140-188 4-52 (101)
60 PF03693 RHH_2: Uncharacterise 67.9 8.2 0.00018 26.9 3.5 27 131-157 15-41 (80)
61 KOG0995|consensus 60.1 51 0.0011 31.3 8.0 31 129-159 104-137 (581)
62 PF09066 B2-adapt-app_C: Beta2 47.9 9.5 0.00021 27.8 1.1 23 7-29 49-71 (114)
63 PRK10991 fucI L-fucose isomera 36.5 78 0.0017 30.3 5.4 82 105-187 183-275 (588)
64 PF09141 Talin_middle: Talin, 29.5 2.8E+02 0.0061 22.0 6.7 60 129-198 86-146 (161)
65 KOG0732|consensus 29.5 22 0.00049 36.2 0.7 50 116-165 797-848 (1080)
66 COG3609 Predicted transcriptio 28.5 1.1E+02 0.0024 21.5 4.0 31 130-160 14-44 (89)
67 PF14061 Mtf2_C: Polycomb-like 25.8 33 0.00072 21.8 0.7 17 9-25 26-42 (50)
68 PHA02675 ORF104 fusion protein 20.7 3E+02 0.0066 19.4 4.8 53 126-187 29-81 (90)
69 PF14056 DUF4250: Domain of un 20.6 1.4E+02 0.003 19.3 2.9 24 128-152 7-30 (55)
No 1
>cd05516 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, specific to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone receptors to boost transcriptional activation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.97 E-value=4.5e-31 Score=196.13 Aligned_cols=107 Identities=37% Similarity=0.720 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHHHhcccccCCCcccccCccCCCCCCCchhhhhcCCCCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHh
Q psy1228 81 PLKRRLYTLCKCLMDYRDQDGRQPMLMFMELPSAKIYPEYYKVIKQPIDMCQIESNIQNEKYRSQDEILSDFRLMFGNCR 160 (202)
Q Consensus 81 ~l~~~l~~il~~l~~~~~~~~~~~~~~F~~pv~~~~~pdY~~iIk~PMdL~tIk~kl~~~~Y~s~~eF~~Dv~lif~Na~ 160 (202)
+|+++|+.|++.|.++.+..|++++++|..||++..+||||++|++||||++|++||++|.|.++++|..||.|||.||+
T Consensus 1 ~l~~~~~~il~~v~~~~d~~g~~~s~~F~~~p~~~~~pdYy~iI~~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~ 80 (107)
T cd05516 1 ELTKKMNKIVDVVIKYKDSDGRQLAEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLEDLEKDVMLLCQNAQ 80 (107)
T ss_pred CHHHHHHHHHHHHHhhhCcCCCEeeHHhhcCCCcccCCCHHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHH
Confidence 37899999999999999989999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy1228 161 EFNEPGSLIYEDAVNLEKVLLERVAEL 187 (202)
Q Consensus 161 ~YN~~~s~i~~~A~~L~~~f~~~~~~i 187 (202)
.||+++|.++.+|..|++.|.++++++
T Consensus 81 ~yN~~~s~i~~~a~~l~~~f~~~~~~~ 107 (107)
T cd05516 81 TFNLEGSLIYEDSIVLQSVFKSARQKI 107 (107)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999998764
No 2
>cd05497 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily, repeat I. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.97 E-value=7.7e-30 Score=189.46 Aligned_cols=103 Identities=32% Similarity=0.518 Sum_probs=96.4
Q ss_pred CHHHHHHHHHHHHHHhcccccCCCcccccCccCCCCC--CCchhhhhcCCCCcHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q psy1228 79 NKPLKRRLYTLCKCLMDYRDQDGRQPMLMFMELPSAK--IYPEYYKVIKQPIDMCQIESNIQNEKYRSQDEILSDFRLMF 156 (202)
Q Consensus 79 ~~~l~~~l~~il~~l~~~~~~~~~~~~~~F~~pv~~~--~~pdY~~iIk~PMdL~tIk~kl~~~~Y~s~~eF~~Dv~lif 156 (202)
+..++..++.|++.|+++.. +++|..||++. .+||||++|++||||+||++||+++.|.++++|.+||+|||
T Consensus 3 ~~q~~~~~~~il~~l~~~~~------s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li~ 76 (107)
T cd05497 3 TNQLQYLLKVVLKALWKHKF------AWPFQQPVDAVKLNLPDYHKIIKTPMDLGTIKKRLENNYYWSASECIQDFNTMF 76 (107)
T ss_pred cHHHHHHHHHHHHHHHhCCc------CccccCCCCcccccCCcHHHHHcCcccHHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 45667778888999998887 99999999976 69999999999999999999999999999999999999999
Q ss_pred HHHhhhCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy1228 157 GNCREFNEPGSLIYEDAVNLEKVLLERVAEL 187 (202)
Q Consensus 157 ~Na~~YN~~~s~i~~~A~~L~~~f~~~~~~i 187 (202)
.||..||+++|.++.+|..|++.|+++++++
T Consensus 77 ~Na~~yN~~~s~i~~~A~~l~~~f~~~l~~~ 107 (107)
T cd05497 77 TNCYIYNKPGDDVVLMAQTLEKLFLQKLAQM 107 (107)
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999874
No 3
>cd05496 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.97 E-value=8e-30 Score=192.49 Aligned_cols=105 Identities=22% Similarity=0.406 Sum_probs=100.3
Q ss_pred CHHHHHHHHHHHHHHhcccccCCCcccccCccCCCCCCCchhhhhcCCCCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q psy1228 79 NKPLKRRLYTLCKCLMDYRDQDGRQPMLMFMELPSAKIYPEYYKVIKQPIDMCQIESNIQNEKYRSQDEILSDFRLMFGN 158 (202)
Q Consensus 79 ~~~l~~~l~~il~~l~~~~~~~~~~~~~~F~~pv~~~~~pdY~~iIk~PMdL~tIk~kl~~~~Y~s~~eF~~Dv~lif~N 158 (202)
...|++.|..|++.|+++.. +++|..||++..+||||++|++||||+||++||++|.|.++++|.+||+|||.|
T Consensus 3 ~~~w~~~c~~il~~l~~~~~------s~~F~~PVd~~~~pdY~~iIk~PmDL~tIk~kL~~~~Y~~~~ef~~D~~lif~N 76 (119)
T cd05496 3 ESDWKKQCKELVNLMWDCED------SEPFRQPVDLLKYPDYRDIIDTPMDLGTVKETLFGGNYDDPMEFAKDVRLIFSN 76 (119)
T ss_pred HHHHHHHHHHHHHHHHhCCc------cccccCCCChhhcCcHHHHhCCcccHHHHHHHHhCCCCCCHHHHHHHHHHHHHH
Confidence 46799999999999999987 999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhCCC-CCHHHHHHHHHHHHHHHHHHHhCC
Q psy1228 159 CREFNEP-GSLIYEDAVNLEKVLLERVAELGP 189 (202)
Q Consensus 159 a~~YN~~-~s~i~~~A~~L~~~f~~~~~~i~~ 189 (202)
|+.||++ +|.|+.+|..|+..|+++++++..
T Consensus 77 a~~yN~~~~s~i~~~a~~L~~~F~~~~~~l~~ 108 (119)
T cd05496 77 SKSYTPNKRSRIYSMTLRLSALFEEHIKKIIS 108 (119)
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999985 999999999999999999988754
No 4
>cd05515 Bromo_polybromo_V Bromodomain, polybromo repeat V. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.97 E-value=6.3e-30 Score=189.38 Aligned_cols=103 Identities=49% Similarity=0.868 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHhcccccCCCcccccCccCCCCCCCchhhhhcCCCCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhh
Q psy1228 83 KRRLYTLCKCLMDYRDQDGRQPMLMFMELPSAKIYPEYYKVIKQPIDMCQIESNIQNEKYRSQDEILSDFRLMFGNCREF 162 (202)
Q Consensus 83 ~~~l~~il~~l~~~~~~~~~~~~~~F~~pv~~~~~pdY~~iIk~PMdL~tIk~kl~~~~Y~s~~eF~~Dv~lif~Na~~Y 162 (202)
+++|+.|++.|.++.+..|++++++|..||++..+|+||++|++||||++|++||+++.|.++++|.+||.|||.||+.|
T Consensus 2 ~~~~~~~~~~i~~~~d~~~~~~a~~F~~~p~~~~~pdYy~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~l~~~Na~~y 81 (105)
T cd05515 2 QQKLWELYNAVKNYTDGRGRRLSLIFMRLPSKSEYPDYYDVIKKPIDMEKIRSKIEGNQYQSLDDMVSDFVLMFDNACKY 81 (105)
T ss_pred hHHHHHHHHHHHHhhCcCCCcccHHhccCCCcccCCcHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHH
Q psy1228 163 NEPGSLIYEDAVNLEKVLLERVA 185 (202)
Q Consensus 163 N~~~s~i~~~A~~L~~~f~~~~~ 185 (202)
|+++|.++.+|..|++.|.+..+
T Consensus 82 N~~~s~i~~~A~~L~~~~~~~~~ 104 (105)
T cd05515 82 NEPDSQIYKDALTLQKVLLETKR 104 (105)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999988754
No 5
>cd05525 Bromo_ASH1 Bromodomain; ASH1_like sub-family. ASH1 (absent, small, or homeotic 1) is a member of the trithorax-group in Drosophila melanogaster, an epigenetic transcriptional regulator of HOX genes. Drosophila ASH1 has been shown to methylate specific lysines in histones H3 and H4. Mammalian ASH1 has been shown to methylate histone H3. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.96 E-value=9.3e-30 Score=188.64 Aligned_cols=103 Identities=29% Similarity=0.559 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHHhcccccCCCcccccCccCCCCCCCchhhhhcCCCCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHh
Q psy1228 81 PLKRRLYTLCKCLMDYRDQDGRQPMLMFMELPSAKIYPEYYKVIKQPIDMCQIESNIQNEKYRSQDEILSDFRLMFGNCR 160 (202)
Q Consensus 81 ~l~~~l~~il~~l~~~~~~~~~~~~~~F~~pv~~~~~pdY~~iIk~PMdL~tIk~kl~~~~Y~s~~eF~~Dv~lif~Na~ 160 (202)
.|...|+.|++.|.++++..|+.++++|.++|++..+||||++|++||||++|++||++|.|.++++|..||.|||.||.
T Consensus 2 ~l~~~l~~i~~~i~~~kd~~g~~~s~~F~~lp~k~~~pdYy~~I~~P~dL~tI~~kl~~~~Y~s~~ef~~D~~l~f~Na~ 81 (106)
T cd05525 2 RLAQVLKEICDAIITYKDSNGQSLAIPFINLPSKKKNPDYYERITDPVDLSTIEKQILTGYYKTPEAFDSDMLKVFRNAE 81 (106)
T ss_pred hHHHHHHHHHHHHHHhhccCCCcccHhhccCCCcccCCchhhhCCCCcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHH
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHH
Q psy1228 161 EFNEPGSLIYEDAVNLEKVLLER 183 (202)
Q Consensus 161 ~YN~~~s~i~~~A~~L~~~f~~~ 183 (202)
.||+++|.++.+|..|++.|++.
T Consensus 82 ~yn~~~S~i~~~A~~L~~~f~~~ 104 (106)
T cd05525 82 KYYGRKSPIGRDVCRLRKAYYQA 104 (106)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHc
Confidence 99999999999999999999864
No 6
>cd05507 Bromo_brd8_like Bromodomain, brd8_like subgroup. In mammals, brd8 (bromodomain containing 8) interacts with the thyroid hormone receptor in a ligand-dependent fashion and enhances thyroid hormone-dependent activation from thyroid response elements. Brd8 is thought to be a nuclear receptor coactivator. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.96 E-value=2.1e-29 Score=186.28 Aligned_cols=102 Identities=26% Similarity=0.467 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHHHhcccccCCCcccccCccCCCCCCCchhhhhcCCCCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q psy1228 80 KPLKRRLYTLCKCLMDYRDQDGRQPMLMFMELPSAKIYPEYYKVIKQPIDMCQIESNIQNEKYRSQDEILSDFRLMFGNC 159 (202)
Q Consensus 80 ~~l~~~l~~il~~l~~~~~~~~~~~~~~F~~pv~~~~~pdY~~iIk~PMdL~tIk~kl~~~~Y~s~~eF~~Dv~lif~Na 159 (202)
..|++.|..|++.|.+++. +++|..||++..+|+||++|++||||+||++||++|.|.++++|.+||.|||+||
T Consensus 2 ~~~~~~~~~il~~l~~~~~------a~~F~~pV~~~~~p~Y~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na 75 (104)
T cd05507 2 RAWKKAILLVYRTLASHRY------ASVFLKPVTEDIAPGYHSVVYRPMDLSTIKKNIENGTIRSTAEFQRDVLLMFQNA 75 (104)
T ss_pred hHHHHHHHHHHHHHHcCCC------CHhhcCCCCccccCCHHHHhCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 5689999999999999998 9999999999999999999999999999999999999999999999999999999
Q ss_pred hhhCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy1228 160 REFNEPGSLIYEDAVNLEKVLLERVAEL 187 (202)
Q Consensus 160 ~~YN~~~s~i~~~A~~L~~~f~~~~~~i 187 (202)
..||+++|.++.+|..|++.+.+.+.+.
T Consensus 76 ~~yN~~~s~v~~~A~~l~~~~~~~~~~~ 103 (104)
T cd05507 76 IMYNSSDHDVYLMAVEMQREVMSQIQQL 103 (104)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999998754
No 7
>cd05495 Bromo_cbp_like Bromodomain, cbp_like subfamily. Cbp (CREB binding protein or CREBBP) is an acetyltransferase acting on histone, which gives a specific tag for transcriptional activation and also acetylates non-histone proteins. CREBBP binds specifically to phosphorylated CREB protein and augments the activity of phosphorylated CREB to activate transcription of cAMP-responsive genes. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.96 E-value=2.5e-29 Score=186.99 Aligned_cols=102 Identities=23% Similarity=0.439 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHHHhcc-cccCCCcccccCccCCCCC--CCchhhhhcCCCCcHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q psy1228 80 KPLKRRLYTLCKCLMDY-RDQDGRQPMLMFMELPSAK--IYPEYYKVIKQPIDMCQIESNIQNEKYRSQDEILSDFRLMF 156 (202)
Q Consensus 80 ~~l~~~l~~il~~l~~~-~~~~~~~~~~~F~~pv~~~--~~pdY~~iIk~PMdL~tIk~kl~~~~Y~s~~eF~~Dv~lif 156 (202)
..|++.|..+++.|.++ .. +++|..||++. ++||||++|++||||+||++||++|.|.++++|.+||+|||
T Consensus 2 ~~l~~~~~~il~~l~~~~~~------s~~F~~PV~~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li~ 75 (108)
T cd05495 2 EELRQALMPTLEKLYKQDPE------SLPFRQPVDPKLLGIPDYFDIVKNPMDLSTIRRKLDTGQYQDPWQYVDDVWLMF 75 (108)
T ss_pred HHHHHHHHHHHHHHHHcCcc------cchhcCCCCccccCCCcHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999 77 99999999987 69999999999999999999999999999999999999999
Q ss_pred HHHhhhCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy1228 157 GNCREFNEPGSLIYEDAVNLEKVLLERVAEL 187 (202)
Q Consensus 157 ~Na~~YN~~~s~i~~~A~~L~~~f~~~~~~i 187 (202)
.||..||+++|.++.+|..|++.|+++++.+
T Consensus 76 ~Na~~yN~~~s~i~~~a~~l~~~F~~~~~~~ 106 (108)
T cd05495 76 DNAWLYNRKTSRVYKYCTKLAEVFEQEIDPV 106 (108)
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998865
No 8
>cd05505 Bromo_WSTF_like Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like). The Williams-Beuren syndrome deletion transcript 9 is a putative transcriptional regulator. WSTF was found to play a role in vitamin D-mediated transcription as part of two chromatin remodeling complexes, WINAC and WICH. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.96 E-value=1.2e-29 Score=185.26 Aligned_cols=96 Identities=24% Similarity=0.390 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHhcccccCCCcccccCccCCCCCCCchhhhhcCCCCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhh
Q psy1228 83 KRRLYTLCKCLMDYRDQDGRQPMLMFMELPSAKIYPEYYKVIKQPIDMCQIESNIQNEKYRSQDEILSDFRLMFGNCREF 162 (202)
Q Consensus 83 ~~~l~~il~~l~~~~~~~~~~~~~~F~~pv~~~~~pdY~~iIk~PMdL~tIk~kl~~~~Y~s~~eF~~Dv~lif~Na~~Y 162 (202)
.+.|..|++.|++++. +++|..||++..+||||++|++||||+||++||++|.|.++++|.+||.|||.||..|
T Consensus 2 ~~~c~~il~~l~~~~~------s~~F~~pv~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~y 75 (97)
T cd05505 2 LQKCEEILSKILKYRF------SWPFREPVTADEAEDYKKVITNPMDLQTMQTKCSCGSYSSVQEFLDDMKLVFSNAEKY 75 (97)
T ss_pred HHHHHHHHHHHHhCCC------cccccCCCChhhcccHHHHcCCcCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 3678999999999887 9999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHH
Q psy1228 163 NEPGSLIYEDAVNLEKVLLERV 184 (202)
Q Consensus 163 N~~~s~i~~~A~~L~~~f~~~~ 184 (202)
|+++|.++..|..|++.|.+++
T Consensus 76 N~~~s~i~~~a~~le~~f~~~~ 97 (97)
T cd05505 76 YENGSYVLSCMRKTEQCCVNLL 97 (97)
T ss_pred CCCCCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999998763
No 9
>cd05519 Bromo_SNF2 Bromodomain, SNF2-like subfamily, specific to fungi. SNF2 is a yeast protein involved in transcriptional activation, it is the catalytic component of the SWI/SNF ATP-dependent chromatin remodeling complex. The protein is essential for the regulation of gene expression (both positive and negative) of a large number of genes. The SWI/SNF complex changes chromatin structure by altering DNA-histone contacts within the nucleosome, which results in a re-positioning of the nucleosome and facilitates or represses the binding of gene-specific transcription factors. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.96 E-value=1.1e-29 Score=187.38 Aligned_cols=102 Identities=41% Similarity=0.818 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHHhcccccCCCcccccCccCCCCCCCchhhhhcCCCCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhh
Q psy1228 82 LKRRLYTLCKCLMDYRDQDGRQPMLMFMELPSAKIYPEYYKVIKQPIDMCQIESNIQNEKYRSQDEILSDFRLMFGNCRE 161 (202)
Q Consensus 82 l~~~l~~il~~l~~~~~~~~~~~~~~F~~pv~~~~~pdY~~iIk~PMdL~tIk~kl~~~~Y~s~~eF~~Dv~lif~Na~~ 161 (202)
|++.|++|++.|.++.+..|++++++|..||++..+|+||++|++||||++|++||+++.|.++.+|..||+|||.||..
T Consensus 1 ~~~~~~~i~~~v~~~~~~~~~~~~~~F~~~p~~~~~pdYy~iIk~Pmdl~~I~~kl~~~~Y~s~~~f~~D~~li~~Na~~ 80 (103)
T cd05519 1 LKAAMLEIYDAVLNCEDETGRKLSELFLEKPSKKLYPDYYVIIKRPIALDQIKRRIEGRAYKSLEEFLEDFHLMFANART 80 (103)
T ss_pred CHHHHHHHHHHHHHhcCcCCCchhHHhcCCCCCCCCcCHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHHH
Q psy1228 162 FNEPGSLIYEDAVNLEKVLLER 183 (202)
Q Consensus 162 YN~~~s~i~~~A~~L~~~f~~~ 183 (202)
||+++|.++.+|..|++.|.++
T Consensus 81 yn~~~s~i~~~A~~l~~~f~~~ 102 (103)
T cd05519 81 YNQEGSIVYEDAVEMEKAFKKK 102 (103)
T ss_pred HCCCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999999875
No 10
>cd05520 Bromo_polybromo_III Bromodomain, polybromo repeat III. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.96 E-value=1.8e-29 Score=186.25 Aligned_cols=99 Identities=35% Similarity=0.701 Sum_probs=95.8
Q ss_pred HHHHHHHHHhcccccCCCcccccCccCCCCCCCchhhhhcCCCCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCC
Q psy1228 85 RLYTLCKCLMDYRDQDGRQPMLMFMELPSAKIYPEYYKVIKQPIDMCQIESNIQNEKYRSQDEILSDFRLMFGNCREFNE 164 (202)
Q Consensus 85 ~l~~il~~l~~~~~~~~~~~~~~F~~pv~~~~~pdY~~iIk~PMdL~tIk~kl~~~~Y~s~~eF~~Dv~lif~Na~~YN~ 164 (202)
-+..|++.|+++.++.|+.++++|+.+|++..+||||++|++||||++|++||+++.|.++++|..||+|||.||+.||+
T Consensus 4 ~~~~l~~~i~~~~~~~g~~~s~pF~~~p~~~~~PdYy~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~yN~ 83 (103)
T cd05520 4 PLWQLYDTIRNARNNQGQLLAEPFLKLPSKRKYPDYYQEIKNPISLQQIRTKLKNGEYETLEELEADLNLMFENAKRYNV 83 (103)
T ss_pred hHHHHHHHHHhhcCCCCCCccHhhhcCCCcccCCCHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 47789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q psy1228 165 PGSLIYEDAVNLEKVLLER 183 (202)
Q Consensus 165 ~~s~i~~~A~~L~~~f~~~ 183 (202)
++|.++.+|..|+++|+++
T Consensus 84 ~~s~i~~~A~~L~~~f~~~ 102 (103)
T cd05520 84 PNSRIYKDAEKLQKLMQAK 102 (103)
T ss_pred CCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999864
No 11
>cd05518 Bromo_polybromo_IV Bromodomain, polybromo repeat IV. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.96 E-value=1.8e-29 Score=186.18 Aligned_cols=101 Identities=50% Similarity=0.897 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHhcccccCCCcccccCccCCCCCCCchhhhhcCCCCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhh
Q psy1228 83 KRRLYTLCKCLMDYRDQDGRQPMLMFMELPSAKIYPEYYKVIKQPIDMCQIESNIQNEKYRSQDEILSDFRLMFGNCREF 162 (202)
Q Consensus 83 ~~~l~~il~~l~~~~~~~~~~~~~~F~~pv~~~~~pdY~~iIk~PMdL~tIk~kl~~~~Y~s~~eF~~Dv~lif~Na~~Y 162 (202)
+++|+.|++.|.++.+..|+.++.+|+.+|++..+||||++|++||||++|++||+++.|.++++|.+||.|||.||..|
T Consensus 2 ~~~~~~l~~~v~~~~d~~gr~~~~~F~~~p~~~~~pdYy~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~y 81 (103)
T cd05518 2 KKRMLALFLYVLEYREGSGRRLCDLFMEKPSKKDYPDYYKIILEPIDLKTIEHNIRNDKYATEEELMDDFKLMFRNARHY 81 (103)
T ss_pred hHHHHHHHHHHHHhhccCCCcccHHHhcCCCcccCccHHHHcCCCcCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHH
Q psy1228 163 NEPGSLIYEDAVNLEKVLLER 183 (202)
Q Consensus 163 N~~~s~i~~~A~~L~~~f~~~ 183 (202)
|+++|.++.+|..|+++|.++
T Consensus 82 N~~~s~i~~~A~~le~~~~~~ 102 (103)
T cd05518 82 NEEGSQVYEDANILEKVLKEK 102 (103)
T ss_pred CCCCCHHHHHHHHHHHHHHhc
Confidence 999999999999999998764
No 12
>cd05524 Bromo_polybromo_I Bromodomain, polybromo repeat I. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.96 E-value=3.3e-29 Score=187.73 Aligned_cols=108 Identities=28% Similarity=0.521 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHhcccccCCCcccccCccCCCCCCCchhhhhcCCCCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhh
Q psy1228 83 KRRLYTLCKCLMDYRDQDGRQPMLMFMELPSAKIYPEYYKVIKQPIDMCQIESNIQNEKYRSQDEILSDFRLMFGNCREF 162 (202)
Q Consensus 83 ~~~l~~il~~l~~~~~~~~~~~~~~F~~pv~~~~~pdY~~iIk~PMdL~tIk~kl~~~~Y~s~~eF~~Dv~lif~Na~~Y 162 (202)
.+.|..|++.|.++.+..|+.++.+|..+|++..+|+||++|++||||++|++||+++.|.++++|.+||.|||.||+.|
T Consensus 4 ~~~c~~il~~l~~~~~~~g~~l~~~F~~~p~~~~~PdYy~iI~~Pmdl~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~y 83 (113)
T cd05524 4 IAVCQELYDTIRNYKSEDGRILCESFIRVPKRRNEPEYYEVVSNPIDLLKIQQKLKTEEYDDVDDLTADFELLINNAKAY 83 (113)
T ss_pred HHHHHHHHHHHHhhcccCCCchhHHHhcCCCcccCCCHHHHhCCccCHHHHHHHhCcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 57899999999999998999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhCCC
Q psy1228 163 NEPGSLIYEDAVNLEKVLLERVAELGPL 190 (202)
Q Consensus 163 N~~~s~i~~~A~~L~~~f~~~~~~i~~~ 190 (202)
|+++|.++.+|..|++.|++.++++...
T Consensus 84 N~~~s~~~~~A~~L~~~f~~~~~~~~~~ 111 (113)
T cd05524 84 YKPDSPEHKDACKLWELFLSARNEVLSG 111 (113)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999887543
No 13
>cd05517 Bromo_polybromo_II Bromodomain, polybromo repeat II. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.96 E-value=2.2e-29 Score=185.85 Aligned_cols=100 Identities=40% Similarity=0.695 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHhcccccCCCcccccCccCCCCCCCchhhhhcCCCCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhh
Q psy1228 83 KRRLYTLCKCLMDYRDQDGRQPMLMFMELPSAKIYPEYYKVIKQPIDMCQIESNIQNEKYRSQDEILSDFRLMFGNCREF 162 (202)
Q Consensus 83 ~~~l~~il~~l~~~~~~~~~~~~~~F~~pv~~~~~pdY~~iIk~PMdL~tIk~kl~~~~Y~s~~eF~~Dv~lif~Na~~Y 162 (202)
++.|..|++.|+++.+..||+++++|..+|++..+|+||++|++||||++|++||+++.|.++.+|..||.|||.||..|
T Consensus 2 ~~~~~~l~~~i~~~~d~~gr~~~~~F~~lp~~~~~pdYy~vI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~y 81 (103)
T cd05517 2 KQILEQLLEAVMTATDPSGRLISELFQKLPSKVLYPDYYAVIKEPIDLKTIAQRIQSGYYKSIEDMEKDLDLMVKNAKTF 81 (103)
T ss_pred hHHHHHHHHHHHHhhCcCCCChhHHHhcCCCCCCCCCHHHHcCCCcCHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHH
Q psy1228 163 NEPGSLIYEDAVNLEKVLLE 182 (202)
Q Consensus 163 N~~~s~i~~~A~~L~~~f~~ 182 (202)
|+++|.++.+|..|++.|+.
T Consensus 82 N~~~s~i~~~A~~l~~~f~~ 101 (103)
T cd05517 82 NEPGSQVYKDANAIKKIFTA 101 (103)
T ss_pred CCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999975
No 14
>cd05504 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_like subfamily. Bromo adjacent to zinc finger 1A (BAZ1A) was identified as a novel human bromodomain gene by cDNA library screening. The Drosophila homologue, Acf1, is part of the CHRAC (chromatin accessibility complex) and regulates ISWI-induced nucleosome remodeling. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.96 E-value=7.6e-29 Score=186.34 Aligned_cols=105 Identities=27% Similarity=0.502 Sum_probs=100.3
Q ss_pred CHHHHHHHHHHHHHHhcccccCCCcccccCccCCCCCCCchhhhhcCCCCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q psy1228 79 NKPLKRRLYTLCKCLMDYRDQDGRQPMLMFMELPSAKIYPEYYKVIKQPIDMCQIESNIQNEKYRSQDEILSDFRLMFGN 158 (202)
Q Consensus 79 ~~~l~~~l~~il~~l~~~~~~~~~~~~~~F~~pv~~~~~pdY~~iIk~PMdL~tIk~kl~~~~Y~s~~eF~~Dv~lif~N 158 (202)
-......|..|++.|++++. +++|..||++..+|+||++|++||||+||++||++|.|.++++|.+||.|||.|
T Consensus 10 ~~~~~~~c~~il~~l~~~~~------s~~F~~pvd~~~~pdY~~vI~~PmDL~tI~~kL~~~~Y~s~~~f~~Dv~LI~~N 83 (115)
T cd05504 10 GPLNLSALEQLLVEIVKHKD------SWPFLRPVSKIEVPDYYDIIKKPMDLGTIKEKLNMGEYKLAEEFLSDIQLVFSN 83 (115)
T ss_pred CHHHHHHHHHHHHHHHhCCC------chhhcCCCCccccccHHHHhcCcccHHHHHHHHccCCCCCHHHHHHHHHHHHHH
Confidence 45568899999999999987 999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhCCCCCHHHHHHHHHHHHHHHHHHHhCC
Q psy1228 159 CREFNEPGSLIYEDAVNLEKVLLERVAELGP 189 (202)
Q Consensus 159 a~~YN~~~s~i~~~A~~L~~~f~~~~~~i~~ 189 (202)
|+.||+++|.++.+|..|++.|++++++++.
T Consensus 84 a~~yN~~~s~i~~~A~~l~~~f~~~~~~~~~ 114 (115)
T cd05504 84 CFLYNPEHTSVYKAGTRLQRFFIKRCRKLGL 114 (115)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999998864
No 15
>cd05510 Bromo_SPT7_like Bromodomain; SPT7_like subfamily. SPT7 is a yeast protein that functions as a component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA, and SLIK. SAGA is involved in the RNA polymerase II-dependent transcriptional regulation of about 10% of all yeast genes. The SPT7 bromodomain has been shown to weakly interact with acetylated histone H3, but not H4. The human representative of this subfamily is cat eye syndrome critical region protein 2 (CECR2). Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.96 E-value=1.2e-28 Score=184.26 Aligned_cols=104 Identities=23% Similarity=0.404 Sum_probs=98.5
Q ss_pred CHHHHHHHHHHHHHHhcc-cccCCCcccccCccCCCCCCCchhhhhcCCCCcHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q psy1228 79 NKPLKRRLYTLCKCLMDY-RDQDGRQPMLMFMELPSAKIYPEYYKVIKQPIDMCQIESNIQNEKYRSQDEILSDFRLMFG 157 (202)
Q Consensus 79 ~~~l~~~l~~il~~l~~~-~~~~~~~~~~~F~~pv~~~~~pdY~~iIk~PMdL~tIk~kl~~~~Y~s~~eF~~Dv~lif~ 157 (202)
..++.+.|..|++.|+++ .. +++|..||++..+|+||++|++||||+||++||+++.|.++++|.+|++|||.
T Consensus 5 ~~~~~~~~~~il~~l~~~~~~------s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~Li~~ 78 (112)
T cd05510 5 QEEFYESLDKVLNELKTYTEH------STPFLTKVSKREAPDYYDIIKKPMDLGTMLKKLKNLQYKSKAEFVDDLNLIWK 78 (112)
T ss_pred HHHHHHHHHHHHHHHHhcCcc------ccchhcCCChhhcCCHHHHhcCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence 478899999999999999 55 99999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhCCCCC-HHHHHHHHHHHHHHHHHHHhC
Q psy1228 158 NCREFNEPGS-LIYEDAVNLEKVLLERVAELG 188 (202)
Q Consensus 158 Na~~YN~~~s-~i~~~A~~L~~~f~~~~~~i~ 188 (202)
||+.||++++ .++++|..|++.+++++..++
T Consensus 79 N~~~yN~~~s~~~~~~A~~l~~~~~~~~~~~~ 110 (112)
T cd05510 79 NCLLYNSDPSHPLRRHANFMKKKAEHLLKLIP 110 (112)
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence 9999999765 688999999999999999884
No 16
>cd05509 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.96 E-value=1.2e-28 Score=181.17 Aligned_cols=100 Identities=32% Similarity=0.615 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHhcccccCCCcccccCccCCCCCCCchhhhhcCCCCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhh
Q psy1228 82 LKRRLYTLCKCLMDYRDQDGRQPMLMFMELPSAKIYPEYYKVIKQPIDMCQIESNIQNEKYRSQDEILSDFRLMFGNCRE 161 (202)
Q Consensus 82 l~~~l~~il~~l~~~~~~~~~~~~~~F~~pv~~~~~pdY~~iIk~PMdL~tIk~kl~~~~Y~s~~eF~~Dv~lif~Na~~ 161 (202)
+.+.|..|++.|.++.. +++|..||++..+|+|+++|++||||++|++||+++.|.++++|.+||+|||+||+.
T Consensus 2 ~~~~~~~il~~l~~~~~------a~~F~~pv~~~~~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~~ 75 (101)
T cd05509 2 LYTQLKKVLDSLKNHKS------AWPFLEPVDKEEAPDYYDVIKKPMDLSTMEEKLENGYYVTLEEFVADLKLIFDNCRL 75 (101)
T ss_pred hHHHHHHHHHHHHhCCC------chhhcCCCChhhcCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 67899999999999998 999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy1228 162 FNEPGSLIYEDAVNLEKVLLERVAEL 187 (202)
Q Consensus 162 YN~~~s~i~~~A~~L~~~f~~~~~~i 187 (202)
||+++|.++.+|..|++.|+++++++
T Consensus 76 yN~~~s~~~~~a~~l~~~f~~~~~~~ 101 (101)
T cd05509 76 YNGPDTEYYKCANKLEKFFWKKLKEL 101 (101)
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999874
No 17
>cd05503 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like subfamily. Bromo adjacent to zinc finger 2A (BAZ2A) and 2B (BAZ2B) were identified as a novel human bromodomain gene by cDNA library screening. BAZ2A is also known as Tip5 (Transcription termination factor I-interacting protein 5) and hWALp3. The proteins may play roles in transcriptional regulation. Human Tip5 is part of a complex termed NoRC (nucleolar remodeling complex), which induces nucleosome sliding and may play a role in the regulation of the rDNA locus. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.96 E-value=9.7e-29 Score=180.53 Aligned_cols=95 Identities=29% Similarity=0.505 Sum_probs=92.1
Q ss_pred HHHHHHHHHHhcccccCCCcccccCccCCCCCCCchhhhhcCCCCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhC
Q psy1228 84 RRLYTLCKCLMDYRDQDGRQPMLMFMELPSAKIYPEYYKVIKQPIDMCQIESNIQNEKYRSQDEILSDFRLMFGNCREFN 163 (202)
Q Consensus 84 ~~l~~il~~l~~~~~~~~~~~~~~F~~pv~~~~~pdY~~iIk~PMdL~tIk~kl~~~~Y~s~~eF~~Dv~lif~Na~~YN 163 (202)
..|..|++.|.++.. +++|..||++..+|+|+++|++||||+||++||++|.|.++++|.+||+|||.||..||
T Consensus 3 ~~c~~il~~l~~~~~------~~~F~~pv~~~~~p~Y~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN 76 (97)
T cd05503 3 ALCETILDEMEAHED------AWPFLEPVNTKLVPGYRKIIKKPMDFSTIREKLESGQYKTLEEFAEDVRLVFDNCETFN 76 (97)
T ss_pred HHHHHHHHHHHcCCC------chhhcCCCCccccCCHHHHhCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 578999999999887 99999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q psy1228 164 EPGSLIYEDAVNLEKVLLERV 184 (202)
Q Consensus 164 ~~~s~i~~~A~~L~~~f~~~~ 184 (202)
+++|.++++|..|++.|+++|
T Consensus 77 ~~~s~i~~~a~~l~~~f~~~~ 97 (97)
T cd05503 77 EDDSEVGRAGHNMRKFFEKRW 97 (97)
T ss_pred CCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999876
No 18
>cd05508 Bromo_RACK7 Bromodomain, RACK7_like subfamily. RACK7 (also called human protein kinase C-binding protein) was identified as a potential tumor suppressor genes, it shares domain architecture with BS69/ZMYND11; both have been implicated in the regulation of cellular proliferation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.96 E-value=1.5e-28 Score=179.97 Aligned_cols=97 Identities=19% Similarity=0.327 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHHHhcccccCCCcccccCccCCCCCCCchhhhhcCCCCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q psy1228 80 KPLKRRLYTLCKCLMDYRDQDGRQPMLMFMELPSAKIYPEYYKVIKQPIDMCQIESNIQNEKYRSQDEILSDFRLMFGNC 159 (202)
Q Consensus 80 ~~l~~~l~~il~~l~~~~~~~~~~~~~~F~~pv~~~~~pdY~~iIk~PMdL~tIk~kl~~~~Y~s~~eF~~Dv~lif~Na 159 (202)
..|+..|..+++.+. ++. +++|..||++..+||||++|++||||+||++||++|.|.++++|.+||+|||.||
T Consensus 2 ~~l~~~L~~~~~~~~-~~~------s~~F~~PV~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~Na 74 (99)
T cd05508 2 DQLSKLLKFALERMK-QPG------AEPFLKPVDLEQFPDYAQYVFKPMDLSTLEKNVRKKAYGSTDAFLADAKWILHNA 74 (99)
T ss_pred hHHHHHHHHHHHHHh-CcC------cchhcCCCChhhCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 356777888888888 665 9999999999999999999999999999999999999999999999999999999
Q ss_pred hhhCCCCCHHHHHHHHHHHHHHHH
Q psy1228 160 REFNEPGSLIYEDAVNLEKVLLER 183 (202)
Q Consensus 160 ~~YN~~~s~i~~~A~~L~~~f~~~ 183 (202)
..||+++|.++.+|..|.+.+...
T Consensus 75 ~~YN~~~s~i~~~A~~l~~~~~~e 98 (99)
T cd05508 75 IIYNGGDHKLTQAAKAIVKICEQE 98 (99)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHhh
Confidence 999999999999999999998764
No 19
>cd05502 Bromo_tif1_like Bromodomain; tif1_like subfamily. Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or corepressors to modulate transcription. Vertebrate Tif1-gamma, also labeled E3 ubiquitin-protein ligase TRIM33, plays a role in the control of hematopoiesis. Its homologue in Xenopus laevis, Ectodermin, has been shown to function in germ-layer specification and control of cell growth during embryogenesis. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.96 E-value=3.7e-28 Score=180.98 Aligned_cols=103 Identities=35% Similarity=0.502 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHHHhcccccCCCcccccCccCCCCCCCchhhhhcCCCCcHHHHHHHHhc---CCCCCHHHHHHHHHHHH
Q psy1228 80 KPLKRRLYTLCKCLMDYRDQDGRQPMLMFMELPSAKIYPEYYKVIKQPIDMCQIESNIQN---EKYRSQDEILSDFRLMF 156 (202)
Q Consensus 80 ~~l~~~l~~il~~l~~~~~~~~~~~~~~F~~pv~~~~~pdY~~iIk~PMdL~tIk~kl~~---~~Y~s~~eF~~Dv~lif 156 (202)
...++.|..|+.+|+++.. +++|..||++ .+|+||++|++||||++|++||++ +.|.++++|.+||+|||
T Consensus 3 ~~~~~~c~~il~~l~~~~~------s~~F~~pv~~-~~p~Y~~iI~~PmdL~tI~~kL~~~~~~~Y~s~~~f~~D~~li~ 75 (109)
T cd05502 3 PIDQRKCERLLLELYCHEL------SLPFHEPVSP-SVPNYYKIIKTPMDLSLIRKKLQPKSPQHYSSPEEFVADVRLMF 75 (109)
T ss_pred HHHHHHHHHHHHHHHhCCC------ChhhcCCCCC-CCCCHHHHCCCCccHHHHHHHHhcCCCCCCCCHHHHHHHHHHHH
Confidence 4568899999999999876 9999999999 899999999999999999999999 69999999999999999
Q ss_pred HHHhhhCCCCCHHHHHHHHHHHHHHHHHHHhCC
Q psy1228 157 GNCREFNEPGSLIYEDAVNLEKVLLERVAELGP 189 (202)
Q Consensus 157 ~Na~~YN~~~s~i~~~A~~L~~~f~~~~~~i~~ 189 (202)
+||..||+++|.++.+|..|++.|++++++++|
T Consensus 76 ~Na~~yN~~~s~i~~~a~~l~~~f~~~~~~~~p 108 (109)
T cd05502 76 KNCYKFNEEDSEVAQAGKELELFFEEQLKEILP 108 (109)
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCc
Confidence 999999999999999999999999999999876
No 20
>cd05522 Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.95 E-value=2.3e-28 Score=180.69 Aligned_cols=102 Identities=38% Similarity=0.580 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHHhcccccCCCcccccCccCCCCCCCchhhhhcCCCCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhh
Q psy1228 82 LKRRLYTLCKCLMDYRDQDGRQPMLMFMELPSAKIYPEYYKVIKQPIDMCQIESNIQNEKYRSQDEILSDFRLMFGNCRE 161 (202)
Q Consensus 82 l~~~l~~il~~l~~~~~~~~~~~~~~F~~pv~~~~~pdY~~iIk~PMdL~tIk~kl~~~~Y~s~~eF~~Dv~lif~Na~~ 161 (202)
...+++.|++.|+++++..|++++++|..+|++..+|+||++|++||||++|++||+++.|.++++|..||.|||.||..
T Consensus 2 ~~~~~~~i~~~v~~~~d~~g~~l~~~F~~~p~~~~~pdYy~~I~~Pmdl~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~ 81 (104)
T cd05522 2 YEARIKNILKGLRKERDENGRLLTLHFEKLPDKAREPEYYQEISNPISLDDIKKKVKRRKYKSFDQFLNDLNLMFENAKL 81 (104)
T ss_pred HHHHHHHHHHHHHHHhCcCCCcccHHHhcCCCccccCcHHHHhCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHHH
Q psy1228 162 FNEPGSLIYEDAVNLEKVLLER 183 (202)
Q Consensus 162 YN~~~s~i~~~A~~L~~~f~~~ 183 (202)
||+++|.++.+|..|++.|+++
T Consensus 82 yn~~~s~i~~~A~~l~~~f~~l 103 (104)
T cd05522 82 YNENDSQEYKDAVLLEKEARLL 103 (104)
T ss_pred HCCCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999999874
No 21
>cd05513 Bromo_brd7_like Bromodomain, brd7_like subgroup. The BRD7 gene encodes a nuclear protein that has been shown to inhibit cell growth and the progression of the cell cycle by regulating cell-cycle genes at the transcriptional level. BRD7 has been identified as a gene involved in nasopharyngeal carcinoma. The protein interacts with acetylated histone H3 via its bromodomain. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.95 E-value=3.7e-28 Score=177.61 Aligned_cols=96 Identities=29% Similarity=0.492 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHHhcccccCCCcccccCccCCCCCCCchhhhhcCCCCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHh
Q psy1228 81 PLKRRLYTLCKCLMDYRDQDGRQPMLMFMELPSAKIYPEYYKVIKQPIDMCQIESNIQNEKYRSQDEILSDFRLMFGNCR 160 (202)
Q Consensus 81 ~l~~~l~~il~~l~~~~~~~~~~~~~~F~~pv~~~~~pdY~~iIk~PMdL~tIk~kl~~~~Y~s~~eF~~Dv~lif~Na~ 160 (202)
+|.+.|..|++.|+++.. +++|..||++..+||||++|++||||+||++||+++.|.++++|.+||+|||.||+
T Consensus 1 ~l~~~l~~il~~l~~~~~------~~~F~~PV~~~~~pdY~~vIk~PmDL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~ 74 (98)
T cd05513 1 PLQKALEQLIRQLQRKDP------HGFFAFPVTDFIAPGYSSIIKHPMDFSTMKEKIKNNDYQSIEEFKDDFKLMCENAM 74 (98)
T ss_pred CHHHHHHHHHHHHHcCCc------cccccCcCCccccccHHHHHcCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence 467899999999999988 99999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHH
Q psy1228 161 EFNEPGSLIYEDAVNLEKVLLE 182 (202)
Q Consensus 161 ~YN~~~s~i~~~A~~L~~~f~~ 182 (202)
.||+++|.++++|.+|.....+
T Consensus 75 ~yN~~~s~~~~~A~~L~~~~~~ 96 (98)
T cd05513 75 KYNKPDTIYYKAAKKLLHSGMK 96 (98)
T ss_pred HHCCCCCHHHHHHHHHHHhhhh
Confidence 9999999999999999876543
No 22
>cd05521 Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.95 E-value=6.5e-28 Score=178.72 Aligned_cols=102 Identities=29% Similarity=0.562 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHhcccccCCCcccccCccCCCCCCCchhhhhcCCCCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhh
Q psy1228 82 LKRRLYTLCKCLMDYRDQDGRQPMLMFMELPSAKIYPEYYKVIKQPIDMCQIESNIQNEKYRSQDEILSDFRLMFGNCRE 161 (202)
Q Consensus 82 l~~~l~~il~~l~~~~~~~~~~~~~~F~~pv~~~~~pdY~~iIk~PMdL~tIk~kl~~~~Y~s~~eF~~Dv~lif~Na~~ 161 (202)
|+++|+.+++.|+++.++.|+.++.+|..+|+++.+||||++|++||||++|++||++ |.++++|.+|+.|||.||..
T Consensus 2 l~~~~~~l~~~i~~~~~~~g~~~~~~F~~lp~~~~~pdYy~iI~~PmdL~tI~~kl~~--Y~s~~ef~~D~~li~~Na~~ 79 (106)
T cd05521 2 LSKKLKPLYDGIYTLKEENGIEIHPIFNVLPLRKDYPDYYKIIKNPLSLNTVKKRLPH--YTNAQEFVNDLAQIPWNARL 79 (106)
T ss_pred HHHHHHHHHHHHHhhcCcCCCCchHhhhcCCccccCccHHHHhcCCCCHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999999999999999999999999999999998 99999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHHH
Q psy1228 162 FNEPGSLIYEDAVNLEKVLLERVA 185 (202)
Q Consensus 162 YN~~~s~i~~~A~~L~~~f~~~~~ 185 (202)
||+++|.++.+|..|++.|.+++.
T Consensus 80 yN~~~s~i~~~A~~le~~~~~~~~ 103 (106)
T cd05521 80 YNTKGSVIYKYALILEKYINDVII 103 (106)
T ss_pred HcCCCCHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999998764
No 23
>cd05528 Bromo_AAA Bromodomain; sub-family co-occurring with AAA domains. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this alignment is an uncharacterized protein predicted from analysis of cDNA clones from human fetal liver
Probab=99.95 E-value=1.4e-27 Score=178.57 Aligned_cols=105 Identities=24% Similarity=0.371 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHHHhcccccCCCcccccCccCCCCCCCchhhhhcCCCCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q psy1228 80 KPLKRRLYTLCKCLMDYRDQDGRQPMLMFMELPSAKIYPEYYKVIKQPIDMCQIESNIQNEKYRSQDEILSDFRLMFGNC 159 (202)
Q Consensus 80 ~~l~~~l~~il~~l~~~~~~~~~~~~~~F~~pv~~~~~pdY~~iIk~PMdL~tIk~kl~~~~Y~s~~eF~~Dv~lif~Na 159 (202)
..++..|..|++.|++++. +++|..||++..+||||++|++||||+||++||+++.|.++++|.+||+|||.||
T Consensus 2 ~~lr~~L~~il~~l~~~~~------~~~F~~pv~~~~~pdY~~vI~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na 75 (112)
T cd05528 2 RELRLFLRDVLKRLASDKR------FNAFTKPVDEEEVPDYYEIIKQPMDLQTILQKLDTHQYLTAKDFLKDIDLIVTNA 75 (112)
T ss_pred hHHHHHHHHHHHHHHhCCC------chhhcCCCCccccCcHHHHHcCCCCHHHHHHHHcCCCcCCHHHHHHHHHHHHHHH
Confidence 3578889999999999988 9999999999999999999999999999999999999999999999999999999
Q ss_pred hhhCCC----CCHHHHHHHHHHHHHHHHHHHhCCC
Q psy1228 160 REFNEP----GSLIYEDAVNLEKVLLERVAELGPL 190 (202)
Q Consensus 160 ~~YN~~----~s~i~~~A~~L~~~f~~~~~~i~~~ 190 (202)
..||++ |+.++.+|..|++.|.+++.+..|.
T Consensus 76 ~~yN~~~s~~~s~i~~~A~~L~~~~~~~~~~~~~~ 110 (112)
T cd05528 76 LEYNPDRDPADKLIRSRACELRDEVHAMIEAELDP 110 (112)
T ss_pred HHHCCCCCccccHHHHHHHHHHHHHHHHHHhcCCC
Confidence 999999 4799999999999999999987654
No 24
>cd05499 Bromo_BDF1_2_II Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat II. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.95 E-value=8.8e-28 Score=176.93 Aligned_cols=98 Identities=30% Similarity=0.495 Sum_probs=92.3
Q ss_pred HHHHHHHHHHhcccccCCCcccccCccCCCCC--CCchhhhhcCCCCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhh
Q psy1228 84 RRLYTLCKCLMDYRDQDGRQPMLMFMELPSAK--IYPEYYKVIKQPIDMCQIESNIQNEKYRSQDEILSDFRLMFGNCRE 161 (202)
Q Consensus 84 ~~l~~il~~l~~~~~~~~~~~~~~F~~pv~~~--~~pdY~~iIk~PMdL~tIk~kl~~~~Y~s~~eF~~Dv~lif~Na~~ 161 (202)
+.|..|++.|++... ++++++|..||++. .+|+||++|++||||++|++||+++.|.++++|.+||+|||.||+.
T Consensus 3 ~~c~~Il~~l~~~~~---~~~s~~F~~pvd~~~~~~pdY~~~I~~P~dL~~I~~kl~~~~Y~s~~ef~~D~~li~~N~~~ 79 (102)
T cd05499 3 KFCEEVLKELMKPKH---SAYNWPFLDPVDPVALNIPNYFSIIKKPMDLGTISKKLQNGQYQSAKEFERDVRLIFKNCYT 79 (102)
T ss_pred HHHHHHHHHHHcccC---CcccchhcCCCCccccCCCCHHHHhcCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Confidence 578999999998653 45799999999988 8999999999999999999999999999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHH
Q psy1228 162 FNEPGSLIYEDAVNLEKVLLERV 184 (202)
Q Consensus 162 YN~~~s~i~~~A~~L~~~f~~~~ 184 (202)
||+++|.++.+|..|++.|+++|
T Consensus 80 yn~~~s~~~~~a~~l~~~fe~~~ 102 (102)
T cd05499 80 FNPEGTDVYMMGHQLEEVFNDKW 102 (102)
T ss_pred HCCCCCHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999875
No 25
>cd05501 Bromo_SP100C_like Bromodomain, SP100C_like subfamily. The SP100C protein is a splice variant of SP100, a major component of PML-SP100 nuclear bodies (NBs), which are poorly understood. It is covalently modified by SUMO-1 and may play a role in processes at the chromatin level. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.95 E-value=1.8e-27 Score=174.59 Aligned_cols=97 Identities=19% Similarity=0.275 Sum_probs=91.4
Q ss_pred HHHHHHHHHHhcccccCCCcccccCccCCCCCCCchhhhhcCCCCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhC
Q psy1228 84 RRLYTLCKCLMDYRDQDGRQPMLMFMELPSAKIYPEYYKVIKQPIDMCQIESNIQNEKYRSQDEILSDFRLMFGNCREFN 163 (202)
Q Consensus 84 ~~l~~il~~l~~~~~~~~~~~~~~F~~pv~~~~~pdY~~iIk~PMdL~tIk~kl~~~~Y~s~~eF~~Dv~lif~Na~~YN 163 (202)
..|..|+..|..+.+ +++|..+| ..+||||++|++||||+||++||.+|.|.++++|.+||+|||.||..||
T Consensus 5 ~~ce~il~~l~~~~~------s~~f~~~p--~~~pdY~~iIk~PMDL~tI~~kL~~~~Y~s~~ef~~D~~Lif~N~~~yN 76 (102)
T cd05501 5 LKCEFLLLKVYCMSK------SGFFISKP--YYIRDYCQGIKEPMWLNKVKERLNERVYHTVEGFVRDMRLIFHNHKLFY 76 (102)
T ss_pred HHHHHHHHHHHhCcc------cccccCCC--CCCCchHHHcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHc
Confidence 459999999999998 99997754 5899999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhCC
Q psy1228 164 EPGSLIYEDAVNLEKVLLERVAELGP 189 (202)
Q Consensus 164 ~~~s~i~~~A~~L~~~f~~~~~~i~~ 189 (202)
+++ .++.+|..|++.|+++|+++++
T Consensus 77 ~~~-~~~~~a~~L~~~Fek~~~~~f~ 101 (102)
T cd05501 77 KDD-DFGQVGITLEKKFEKNFKEVFA 101 (102)
T ss_pred CCC-HHHHHHHHHHHHHHHHHHHHhc
Confidence 999 9999999999999999998764
No 26
>cd05512 Bromo_brd1_like Bromodomain; brd1_like subfamily. BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.95 E-value=1e-27 Score=175.45 Aligned_cols=94 Identities=27% Similarity=0.506 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHhcccccCCCcccccCccCCCCCCCchhhhhcCCCCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHh
Q psy1228 81 PLKRRLYTLCKCLMDYRDQDGRQPMLMFMELPSAKIYPEYYKVIKQPIDMCQIESNIQNEKYRSQDEILSDFRLMFGNCR 160 (202)
Q Consensus 81 ~l~~~l~~il~~l~~~~~~~~~~~~~~F~~pv~~~~~pdY~~iIk~PMdL~tIk~kl~~~~Y~s~~eF~~Dv~lif~Na~ 160 (202)
++...|..+++.|.++.. +++|..||++..+|+|+++|++||||+||++||+++.|.++++|..||+|||.||+
T Consensus 1 p~~~~l~~il~~l~~~~~------~~~F~~pVd~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~ 74 (98)
T cd05512 1 PLEVLLRKTLDQLQEKDT------AEIFSEPVDLSEVPDYLDHIKQPMDFSTMRKKLESQRYRTLEDFEADFNLIINNCL 74 (98)
T ss_pred CHHHHHHHHHHHHHhCCC------chhhcCCCCccccCCHHHHhcCCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence 367889999999999887 99999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHH
Q psy1228 161 EFNEPGSLIYEDAVNLEKVL 180 (202)
Q Consensus 161 ~YN~~~s~i~~~A~~L~~~f 180 (202)
.||+++|.++++|..|++.-
T Consensus 75 ~yN~~~s~~~~~A~~l~~~~ 94 (98)
T cd05512 75 AYNAKDTIFYRAAVRLRDQG 94 (98)
T ss_pred HHCCCCCHHHHHHHHHHHhh
Confidence 99999999999999998764
No 27
>cd05506 Bromo_plant1 Bromodomain, uncharacterized subfamily specific to plants. Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.95 E-value=1.3e-27 Score=174.91 Aligned_cols=96 Identities=27% Similarity=0.448 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHhcccccCCCcccccCccCCCCC--CCchhhhhcCCCCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHh
Q psy1228 83 KRRLYTLCKCLMDYRDQDGRQPMLMFMELPSAK--IYPEYYKVIKQPIDMCQIESNIQNEKYRSQDEILSDFRLMFGNCR 160 (202)
Q Consensus 83 ~~~l~~il~~l~~~~~~~~~~~~~~F~~pv~~~--~~pdY~~iIk~PMdL~tIk~kl~~~~Y~s~~eF~~Dv~lif~Na~ 160 (202)
.+.|..|++.|++++. +++|..||++. .+|+|+++|++||||++|++||+++.|.++++|.+|+++||.||+
T Consensus 2 ~~~c~~il~~l~~~~~------~~~F~~pv~~~~~~~p~Y~~~I~~P~dl~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~ 75 (99)
T cd05506 2 MKQCGTLLRKLMKHKW------GWVFNAPVDVVALGLPDYFDIIKKPMDLGTVKKKLEKGEYSSPEEFAADVRLTFANAM 75 (99)
T ss_pred HHHHHHHHHHHHhCCC------CccccCCCCccccCCCCHHHHHcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 5789999999999887 99999999876 699999999999999999999999999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHH
Q psy1228 161 EFNEPGSLIYEDAVNLEKVLLERV 184 (202)
Q Consensus 161 ~YN~~~s~i~~~A~~L~~~f~~~~ 184 (202)
.||+++|.++.+|..|++.|+++|
T Consensus 76 ~yn~~~s~i~~~a~~l~~~fe~~w 99 (99)
T cd05506 76 RYNPPGNDVHTMAKELLKIFETRW 99 (99)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999886
No 28
>cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily. Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to acetylated histone H4. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.95 E-value=8.2e-28 Score=179.96 Aligned_cols=103 Identities=29% Similarity=0.420 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHhcccccCCCcccccCccCCCCCCCchhhhhcCCCCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhh
Q psy1228 83 KRRLYTLCKCLMDYRDQDGRQPMLMFMELPSAKIYPEYYKVIKQPIDMCQIESNIQNEKYRSQDEILSDFRLMFGNCREF 162 (202)
Q Consensus 83 ~~~l~~il~~l~~~~~~~~~~~~~~F~~pv~~~~~pdY~~iIk~PMdL~tIk~kl~~~~Y~s~~eF~~Dv~lif~Na~~Y 162 (202)
...+..|++.|+++.. +++|..||++..+|+||++|++||||++|++||+++.|.++++|.+||+|||+||..|
T Consensus 2 ~~~l~~ii~~l~~~~~------s~~F~~pv~~~~~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~y 75 (112)
T cd05511 2 SFILDEIVNELKNLPD------SWPFHTPVNKKKVPDYYKIIKRPMDLQTIRKKISKHKYQSREEFLEDIELIVDNSVLY 75 (112)
T ss_pred HHHHHHHHHHHHhCCC------chhhcCCCChhhcccHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 4567889999999887 9999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhCCCC
Q psy1228 163 NEPGSLIYEDAVNLEKVLLERVAELGPLP 191 (202)
Q Consensus 163 N~~~s~i~~~A~~L~~~f~~~~~~i~~~~ 191 (202)
|+++|.++.+|..|...|++.++++....
T Consensus 76 N~~~s~i~~~A~~l~~~~~~~~~~~~~~~ 104 (112)
T cd05511 76 NGPDSVYTKKAKEMLELAEELLAEREEKL 104 (112)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 99999999999999999999999886543
No 29
>cd05500 Bromo_BDF1_2_I Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat I. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.95 E-value=3.8e-27 Score=173.90 Aligned_cols=100 Identities=26% Similarity=0.445 Sum_probs=94.5
Q ss_pred CHHHHHHHHHHHHHHhcccccCCCcccccCccCCCCC--CCchhhhhcCCCCcHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q psy1228 79 NKPLKRRLYTLCKCLMDYRDQDGRQPMLMFMELPSAK--IYPEYYKVIKQPIDMCQIESNIQNEKYRSQDEILSDFRLMF 156 (202)
Q Consensus 79 ~~~l~~~l~~il~~l~~~~~~~~~~~~~~F~~pv~~~--~~pdY~~iIk~PMdL~tIk~kl~~~~Y~s~~eF~~Dv~lif 156 (202)
+....+.|.+|++.|.++.. +++|..||++. .+|+|+++|++||||++|++||+++.|.++.+|.+||++||
T Consensus 2 t~~~~~~~~~ii~~l~~~~~------a~~F~~pv~~~~~~~p~Y~~~I~~P~dL~tI~~kl~~~~Y~s~~~f~~D~~li~ 75 (103)
T cd05500 2 TKHQHKFLLSSIRSLKRLKD------ARPFLVPVDPVKLNIPHYPTIIKKPMDLGTIERKLKSNVYTSVEEFTADFNLMV 75 (103)
T ss_pred CHHHHHHHHHHHHHHHcCCC------ChhhcCCCCcccccCCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 35678899999999999988 99999999975 69999999999999999999999999999999999999999
Q ss_pred HHHhhhCCCCCHHHHHHHHHHHHHHHHH
Q psy1228 157 GNCREFNEPGSLIYEDAVNLEKVLLERV 184 (202)
Q Consensus 157 ~Na~~YN~~~s~i~~~A~~L~~~f~~~~ 184 (202)
.||..||+++|.++.+|..|++.|++.+
T Consensus 76 ~Na~~yN~~~s~~~~~A~~l~~~fe~~~ 103 (103)
T cd05500 76 DNCLTFNGPEHPVSQMGKRLQAAFEKHL 103 (103)
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999853
No 30
>cd05498 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.95 E-value=3.4e-27 Score=173.74 Aligned_cols=99 Identities=25% Similarity=0.432 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHhcccccCCCcccccCccCCCCC--CCchhhhhcCCCCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHh
Q psy1228 83 KRRLYTLCKCLMDYRDQDGRQPMLMFMELPSAK--IYPEYYKVIKQPIDMCQIESNIQNEKYRSQDEILSDFRLMFGNCR 160 (202)
Q Consensus 83 ~~~l~~il~~l~~~~~~~~~~~~~~F~~pv~~~--~~pdY~~iIk~PMdL~tIk~kl~~~~Y~s~~eF~~Dv~lif~Na~ 160 (202)
.+.|..|++.|++++ +++++++|..||++. .+|+||++|++||||++|++||+++.|.++++|..||+|||+||+
T Consensus 2 ~~~c~~il~~l~~~~---~~~~a~~F~~pv~~~~~~~p~Y~~~I~~Pmdl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na~ 78 (102)
T cd05498 2 LKFCSGILKELFSKK---HKAYAWPFYKPVDPEALGLHDYHDIIKHPMDLSTIKKKLDNREYADAQEFAADVRLMFSNCY 78 (102)
T ss_pred hhHHHHHHHHHHhCC---CccccCcccCcCCccccCCCcHHHHccCCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHHH
Confidence 467999999999983 356699999999876 599999999999999999999999999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHH
Q psy1228 161 EFNEPGSLIYEDAVNLEKVLLERV 184 (202)
Q Consensus 161 ~YN~~~s~i~~~A~~L~~~f~~~~ 184 (202)
.||+++|.++.+|..|++.|+++|
T Consensus 79 ~yn~~~s~i~~~a~~l~~~fe~~~ 102 (102)
T cd05498 79 KYNPPDHPVHAMARKLQDVFEDRW 102 (102)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999876
No 31
>KOG1474|consensus
Probab=99.94 E-value=4.3e-27 Score=220.88 Aligned_cols=112 Identities=29% Similarity=0.431 Sum_probs=104.4
Q ss_pred CCCCHHHHHHHHHHHHHHhcccccCCCcccccCccCCCCC--CCchhhhhcCCCCcHHHHHHHHhcCCCCCHHHHHHHHH
Q psy1228 76 YLDNKPLKRRLYTLCKCLMDYRDQDGRQPMLMFMELPSAK--IYPEYYKVIKQPIDMCQIESNIQNEKYRSQDEILSDFR 153 (202)
Q Consensus 76 ~~~~~~l~~~l~~il~~l~~~~~~~~~~~~~~F~~pv~~~--~~pdY~~iIk~PMdL~tIk~kl~~~~Y~s~~eF~~Dv~ 153 (202)
......+-+.|..||..|+++++ +|||..|||.. .+||||+||++||||+||+.||.++.|.++.+|.+||+
T Consensus 217 ~~~~~~~lk~C~~iLk~l~~~k~------awpF~~PVD~v~LgLpDY~~IIK~PMDLgTIK~kL~~~~Y~~~~eF~~DVR 290 (640)
T KOG1474|consen 217 SKLTVELLKQCLSILKRLMKHKH------AWPFNEPVDVVKLGLPDYHDIIKHPMDLGTIKKKLEKGEYKSAEEFAADVR 290 (640)
T ss_pred ccccHHHHHHHHHHHHHHHhccC------CCCcCCCcCHHhcCCcchhhhcCCCccHHHHHhhhcccccCCHHHHHHHHH
Confidence 33567788899999999999999 89999999986 49999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCC
Q psy1228 154 LMFGNCREFNEPGSLIYEDAVNLEKVLLERVAELGPLPSG 193 (202)
Q Consensus 154 lif~Na~~YN~~~s~i~~~A~~L~~~f~~~~~~i~~~~~~ 193 (202)
|||.||++||++|++||.||+.|+++|+.+|..++.....
T Consensus 291 L~F~Ncm~YNp~g~dV~~Ma~~L~~~Fe~rw~~~~~~~~~ 330 (640)
T KOG1474|consen 291 LTFDNCMTYNPEGSDVYAMAKKLQEVFEERWASMPLEIEE 330 (640)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhhccccccc
Confidence 9999999999999999999999999999999987766543
No 32
>cd05529 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=1.5e-25 Score=171.44 Aligned_cols=108 Identities=27% Similarity=0.357 Sum_probs=97.0
Q ss_pred CCCCHHHHHHHHHHHHHHhcccccCCCcccccCccCCCCC-CCchhhhhcCCCCcHHHHHHHHhcCCCCCHHHHHHHHHH
Q psy1228 76 YLDNKPLKRRLYTLCKCLMDYRDQDGRQPMLMFMELPSAK-IYPEYYKVIKQPIDMCQIESNIQNEKYRSQDEILSDFRL 154 (202)
Q Consensus 76 ~~~~~~l~~~l~~il~~l~~~~~~~~~~~~~~F~~pv~~~-~~pdY~~iIk~PMdL~tIk~kl~~~~Y~s~~eF~~Dv~l 154 (202)
+.....++..+..+++.|... .++..+++|..||+.. .+|+||++|++||||+||++||+++.|+++++|..||+|
T Consensus 19 ~~~~~~~~~~i~~~l~~l~~~---~~~~~~~~F~~pv~~~~~~p~Y~~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~L 95 (128)
T cd05529 19 PHIRDEERERLISGLDKLLLS---LQLEIAEYFEYPVDLRAWYPDYWNRVPVPMDLETIRSRLENRYYRSLEALRHDVRL 95 (128)
T ss_pred CCCCHHHHHHHHHHHHHHHhc---ccCcccccccCCCCccccCCcHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 445677788888888888832 2344599999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHH
Q psy1228 155 MFGNCREFNEPGSLIYEDAVNLEKVLLERVAE 186 (202)
Q Consensus 155 if~Na~~YN~~~s~i~~~A~~L~~~f~~~~~~ 186 (202)
||.||+.||+++|.++.+|..|++.|.+++..
T Consensus 96 i~~Na~~yN~~~s~i~~~A~~l~~~~~~~l~~ 127 (128)
T cd05529 96 ILSNAETFNEPNSEIAKKAKRLSDWLLRILSS 127 (128)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999998763
No 33
>smart00297 BROMO bromo domain.
Probab=99.93 E-value=1.2e-25 Score=165.94 Aligned_cols=102 Identities=35% Similarity=0.605 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHHHhcccccCCCcccccCccCCCCCCCchhhhhcCCCCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q psy1228 80 KPLKRRLYTLCKCLMDYRDQDGRQPMLMFMELPSAKIYPEYYKVIKQPIDMCQIESNIQNEKYRSQDEILSDFRLMFGNC 159 (202)
Q Consensus 80 ~~l~~~l~~il~~l~~~~~~~~~~~~~~F~~pv~~~~~pdY~~iIk~PMdL~tIk~kl~~~~Y~s~~eF~~Dv~lif~Na 159 (202)
..+...|..|++.+.++. ++++|..||++..+|+||++|++||||++|++||+++.|.++++|.+||++||.||
T Consensus 6 ~~~~~~~~~i~~~~~~~~------~~~~F~~~~~~~~~p~Y~~~i~~P~dl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na 79 (107)
T smart00297 6 KKLQSLLKAVLDKLDSHR------LSWPFLKPVDRKEAPDYYDIIKKPMDLSTIKKKLENGKYSSVEEFVADVQLMFSNA 79 (107)
T ss_pred HHHHHHHHHHHHHHHhCc------cchhhccCCChhhccCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 445556666666666544 59999999999999999999999999999999999999999999999999999999
Q ss_pred hhhCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy1228 160 REFNEPGSLIYEDAVNLEKVLLERVAEL 187 (202)
Q Consensus 160 ~~YN~~~s~i~~~A~~L~~~f~~~~~~i 187 (202)
+.||++++.++.+|..|.+.|++.|+++
T Consensus 80 ~~~n~~~s~~~~~a~~l~~~f~~~~~~~ 107 (107)
T smart00297 80 KTYNGPDSEVYKDAKKLEKFFEKKLREL 107 (107)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999863
No 34
>cd05526 Bromo_polybromo_VI Bromodomain, polybromo repeat VI. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.92 E-value=3e-24 Score=159.33 Aligned_cols=105 Identities=28% Similarity=0.398 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHHhcccccCCCcccccCccCCCCCCCchhhhhcCCCCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHh
Q psy1228 81 PLKRRLYTLCKCLMDYRDQDGRQPMLMFMELPSAKIYPEYYKVIKQPIDMCQIESNIQNEKYRSQDEILSDFRLMFGNCR 160 (202)
Q Consensus 81 ~l~~~l~~il~~l~~~~~~~~~~~~~~F~~pv~~~~~pdY~~iIk~PMdL~tIk~kl~~~~Y~s~~eF~~Dv~lif~Na~ 160 (202)
.+++.+..|++.|+++.+..|+.++.+|.+.|+ ..|+|+.+|+.||||.+|++||++|.|.++++|.+||.+||.||.
T Consensus 3 ~vq~~l~~l~~~V~~~~D~~Gr~~s~~f~~LP~--~~~~~~~~ik~Pi~l~~Ik~ki~~~~Y~~ld~~~~D~~lmf~NAr 80 (110)
T cd05526 3 LVQELLATLFVSVMNHQDEEGRCYSDSLAELPE--LAVDGVGPKKIPLTLDIIKRNVDKGRYRRLDKFQEDMFEVLERAR 80 (110)
T ss_pred HHHHHHHHHHHHHHhccCCCCCCchHHHHHCCC--cccCchhhhcCCccHHHHHHHHHcCCcCcHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999998 446778999999999999999999999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy1228 161 EFNEPGSLIYEDAVNLEKVLLERVAEL 187 (202)
Q Consensus 161 ~YN~~~s~i~~~A~~L~~~f~~~~~~i 187 (202)
.||.++|.+|.+|..|+.+|.+.-.++
T Consensus 81 ~yN~~~S~iy~dA~eLq~~f~~~rd~~ 107 (110)
T cd05526 81 RLSRTDSEIYEDAVELQQFFIKIRDEL 107 (110)
T ss_pred HhCcccCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999887765
No 35
>cd04369 Bromodomain Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.91 E-value=7.3e-24 Score=152.45 Aligned_cols=98 Identities=38% Similarity=0.675 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHhcccccCCCcccccCccCCCCCCCchhhhhcCCCCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhh
Q psy1228 83 KRRLYTLCKCLMDYRDQDGRQPMLMFMELPSAKIYPEYYKVIKQPIDMCQIESNIQNEKYRSQDEILSDFRLMFGNCREF 162 (202)
Q Consensus 83 ~~~l~~il~~l~~~~~~~~~~~~~~F~~pv~~~~~pdY~~iIk~PMdL~tIk~kl~~~~Y~s~~eF~~Dv~lif~Na~~Y 162 (202)
...|..+++.|.++. ++.+.+|..||++..+|+|+++|++||||++|++||+++.|.++.+|.+||++||.||+.|
T Consensus 2 ~~~~~~i~~~l~~~~----~~~~~~F~~~~~~~~~~~Y~~~i~~P~~l~~I~~kl~~~~Y~s~~~f~~D~~li~~Na~~~ 77 (99)
T cd04369 2 KKKLRSLLDALKKLK----RDLSEPFLEPVDPKEAPDYYEVIKNPMDLSTIKKKLKNGEYKSLEEFEADVRLIFSNAKTY 77 (99)
T ss_pred HHHHHHHHHHHHhhc----ccccHHHhcCCChhcCCCHHHHHhCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 467889999999882 2239999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHH
Q psy1228 163 NEPGSLIYEDAVNLEKVLLERV 184 (202)
Q Consensus 163 N~~~s~i~~~A~~L~~~f~~~~ 184 (202)
|++++.++.+|..|+..|++.+
T Consensus 78 n~~~~~~~~~a~~l~~~~~~~~ 99 (99)
T cd04369 78 NGPGSPIYKDAKKLEKLFEKLL 99 (99)
T ss_pred CCCCCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999998753
No 36
>PF00439 Bromodomain: Bromodomain; InterPro: IPR001487 Bromodomains are found in a variety of mammalian, invertebrate and yeast DNA-binding proteins []. Bromodomains can interact with acetylated lysine []. In some proteins, the classical bromodomain has diverged to such an extent that parts of the region are either missing or contain an insertion (e.g., mammalian protein HRX, Caenorhabditis elegans hypothetical protein ZK783.4, yeast protein YTA7). The bromodomain may occur as a single copy, or in duplicate. The precise function of the domain is unclear, but it may be involved in protein-protein interactions and may play a role in assembly or activity of multi-component complexes involved in transcriptional activation [].; GO: 0005515 protein binding; PDB: 3P1C_A 4A9K_B 3SVH_A 3P1E_B 3P1F_A 1JSP_B 2L85_A 3P1D_B 3DWY_B 2D82_A ....
Probab=99.91 E-value=7.8e-24 Score=149.69 Aligned_cols=84 Identities=36% Similarity=0.610 Sum_probs=79.3
Q ss_pred HHHHHHHHhcccccCCCcccccCccCCCCCCCchhhhhcCCCCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCC
Q psy1228 86 LYTLCKCLMDYRDQDGRQPMLMFMELPSAKIYPEYYKVIKQPIDMCQIESNIQNEKYRSQDEILSDFRLMFGNCREFNEP 165 (202)
Q Consensus 86 l~~il~~l~~~~~~~~~~~~~~F~~pv~~~~~pdY~~iIk~PMdL~tIk~kl~~~~Y~s~~eF~~Dv~lif~Na~~YN~~ 165 (202)
|+.|++.|+++.. +++|..||+...+|+|+++|++||||++|++||++|.|.++++|.+||++||.||..||++
T Consensus 1 C~~il~~l~~~~~------~~~F~~~~~~~~~p~y~~~i~~P~dL~~I~~kl~~~~Y~s~~~f~~Dv~~i~~Na~~yn~~ 74 (84)
T PF00439_consen 1 CREILEELMKHPI------SSPFSKPVDPKEYPDYYEIIKNPMDLSTIRKKLENGKYKSIEEFEADVRLIFQNARRYNPP 74 (84)
T ss_dssp HHHHHHHHHTSTT------GGGGSSSTHTTTSTTHHHHSSSS--HHHHHHHHHTTSSSSHHHHHHHHHHHHHHHHHHSCT
T ss_pred CHHHHHHHHcCCC------chhhcCCCChhhCCCHHHHHhhccchhhhhHHhhccchhhHHHHHHHHHHHHHHHHHHCCC
Confidence 7889999999997 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHH
Q psy1228 166 GSLIYEDAVN 175 (202)
Q Consensus 166 ~s~i~~~A~~ 175 (202)
+|.++.+|++
T Consensus 75 ~s~~~~~A~~ 84 (84)
T PF00439_consen 75 DSPIYKAAEK 84 (84)
T ss_dssp TSHHHHHHHH
T ss_pred cCHHHHHhcC
Confidence 9999999974
No 37
>cd05492 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family. ZMYND11 or BS69 is a ubiquitously expressed nuclear protein that has been shown to associate with chromatin. It interacts with chromatin remodeling factors and might play a role in chromatin remodeling and gene expression. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.90 E-value=3.3e-23 Score=153.95 Aligned_cols=100 Identities=23% Similarity=0.267 Sum_probs=86.0
Q ss_pred HHHHHHHHHhcccccCCCcccccCccCCC-----CCCCchhhhhcCCCCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q psy1228 85 RLYTLCKCLMDYRDQDGRQPMLMFMELPS-----AKIYPEYYKVIKQPIDMCQIESNIQNEKYRSQDEILSDFRLMFGNC 159 (202)
Q Consensus 85 ~l~~il~~l~~~~~~~~~~~~~~F~~pv~-----~~~~pdY~~iIk~PMdL~tIk~kl~~~~Y~s~~eF~~Dv~lif~Na 159 (202)
.|.-++..+..... .+.||..||. ...+|+|+++|++||||+||++||++|.|++++||.+||.|||+||
T Consensus 4 ~L~f~~~~~k~~lp-----~~~~~~~~v~~~~~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~N~ 78 (109)
T cd05492 4 LLKFIVSRMKSWLP-----PDTTNRAIVLNKRGKATKLPKRRRLIHTHLDVADIQEKINSEKYTSLEEFKADALLLLHNT 78 (109)
T ss_pred hHHHHHHHHHhcCc-----ccccccccccccCchhccCCCHHHHhCCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 34555666665332 2678888884 2359999999999999999999999999999999999999999999
Q ss_pred hhhCCCCCHHHHHHHHHHHHHHHHHHHhCC
Q psy1228 160 REFNEPGSLIYEDAVNLEKVLLERVAELGP 189 (202)
Q Consensus 160 ~~YN~~~s~i~~~A~~L~~~f~~~~~~i~~ 189 (202)
..||+++|.++.+|..|.+.....+.++..
T Consensus 79 ~~yNg~~s~~~~~A~~l~~d~~~el~Ei~~ 108 (109)
T cd05492 79 AIFHGADSEQYDAARWLYRDTCHDLRELRL 108 (109)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999888753
No 38
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=99.86 E-value=1.5e-21 Score=173.40 Aligned_cols=115 Identities=35% Similarity=0.619 Sum_probs=108.7
Q ss_pred CCHHHHHHHHHHHHHHhcccccCCCcccccCccCCCCCCCchhhhhcCCCCcHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q psy1228 78 DNKPLKRRLYTLCKCLMDYRDQDGRQPMLMFMELPSAKIYPEYYKVIKQPIDMCQIESNIQNEKYRSQDEILSDFRLMFG 157 (202)
Q Consensus 78 ~~~~l~~~l~~il~~l~~~~~~~~~~~~~~F~~pv~~~~~pdY~~iIk~PMdL~tIk~kl~~~~Y~s~~eF~~Dv~lif~ 157 (202)
....+.+.+..+...+.+.....++.++.+|+.+|++..+|+||.+|+.||||.+|+++|+.+.|.++++|..|+.|||.
T Consensus 139 ~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~F~~~p~k~~~PdYy~iIk~Pm~L~~i~kkl~~~~Y~s~eef~~D~~lM~~ 218 (371)
T COG5076 139 EDELLYADNKAIAKFKKQLFLRDGRFLSSIFLGLPSKREYPDYYEIIKSPMDLLTIQKKLKNGRYKSFEEFVSDLNLMFD 218 (371)
T ss_pred cchhHHHHHHHHHHHHHHhhcccccccccccccCCccccCCChheeecchhhHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 45667888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhCCCCCHHHHHHHHHHHHHHHHHHHhCCCCC
Q psy1228 158 NCREFNEPGSLIYEDAVNLEKVLLERVAELGPLPS 192 (202)
Q Consensus 158 Na~~YN~~~s~i~~~A~~L~~~f~~~~~~i~~~~~ 192 (202)
||..||++++.++.+|..|++.|..+++.+.+...
T Consensus 219 N~~~yN~~~s~v~~~a~~l~~~~~~~i~~~~~~~~ 253 (371)
T COG5076 219 NCKLYNGPDSSVYVDAKELEKYFLKLIEEIPEEML 253 (371)
T ss_pred hhhhccCCCcchhhhhHHHHHHHHHHHHhccccch
Confidence 99999999999999999999999999998776544
No 39
>KOG1245|consensus
Probab=99.78 E-value=4.6e-19 Score=176.74 Aligned_cols=97 Identities=28% Similarity=0.476 Sum_probs=94.2
Q ss_pred HHHHHHHHhcccccCCCcccccCccCCCCCCCchhhhhcCCCCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCC
Q psy1228 86 LYTLCKCLMDYRDQDGRQPMLMFMELPSAKIYPEYYKVIKQPIDMCQIESNIQNEKYRSQDEILSDFRLMFGNCREFNEP 165 (202)
Q Consensus 86 l~~il~~l~~~~~~~~~~~~~~F~~pv~~~~~pdY~~iIk~PMdL~tIk~kl~~~~Y~s~~eF~~Dv~lif~Na~~YN~~ 165 (202)
|..|+..|..|.. +|||++||+...+|+||+||++||||+||+.|+..|.|.++++|..||+|||.||.+||.+
T Consensus 1306 ~e~il~e~~~~~~------awPFlepVn~~~vp~Y~~IIk~Pmdl~tir~k~~~~~Y~~~eef~~Di~lvf~Nc~~yN~~ 1379 (1404)
T KOG1245|consen 1306 CEDILHELVVHKA------AWPFLEPVNPKEVPDYYDIIKKPMDLSTIREKLSKGIYPSPEEFATDIELVFDNCETYNED 1379 (1404)
T ss_pred HHHHHHHHHHhhh------cchhhccCChhhcccHHHHhcChhHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhccc
Confidence 8999999999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhCC
Q psy1228 166 GSLIYEDAVNLEKVLLERVAELGP 189 (202)
Q Consensus 166 ~s~i~~~A~~L~~~f~~~~~~i~~ 189 (202)
|.|..+...|+.+|++.|....+
T Consensus 1380 -s~i~~ag~~l~~ff~~~~~~~~~ 1402 (1404)
T KOG1245|consen 1380 -SEIGRAGTCLRRFFHKRWRKKFP 1402 (1404)
T ss_pred -hhhhhhcchHHHHHHHHHHhhcC
Confidence 99999999999999999887655
No 40
>KOG1472|consensus
Probab=99.60 E-value=7.9e-16 Score=144.06 Aligned_cols=103 Identities=27% Similarity=0.498 Sum_probs=97.3
Q ss_pred CHHHHHHHHHHHHHHhcccccCCCcccccCccCCCCCCCchhhhhcCCCCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q psy1228 79 NKPLKRRLYTLCKCLMDYRDQDGRQPMLMFMELPSAKIYPEYYKVIKQPIDMCQIESNIQNEKYRSQDEILSDFRLMFGN 158 (202)
Q Consensus 79 ~~~l~~~l~~il~~l~~~~~~~~~~~~~~F~~pv~~~~~pdY~~iIk~PMdL~tIk~kl~~~~Y~s~~eF~~Dv~lif~N 158 (202)
...+...++.++..|.+|.+ +|||..||...++||||++|++||||.||+.+|+++.|...+.|++|+..||.|
T Consensus 604 ~~~~~s~~~~il~~l~~h~~------awPf~~Pv~~~e~pdyy~~I~~pmDl~tM~~~l~~~~y~~~~~f~ad~~~vf~n 677 (720)
T KOG1472|consen 604 PGKLFSAIQNILDQLQNHGD------AWPFLKPVNKKEVPDYYDVIKHPMDLRTMQNRLKDNQYTEVELFMADVVRVFAN 677 (720)
T ss_pred cchhhHHHHhHHhhhhcCCc------cCCccCccccccCCcHHHHhcccccHHHHhhhccccchhhHHHHHHHHHHHHhh
Confidence 34566778899999999998 999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy1228 159 CREFNEPGSLIYEDAVNLEKVLLERVAEL 187 (202)
Q Consensus 159 a~~YN~~~s~i~~~A~~L~~~f~~~~~~i 187 (202)
|..||+..+..++.|..|...|...+.+.
T Consensus 678 cr~yn~~~~~y~k~~~~le~~~~~k~~~~ 706 (720)
T KOG1472|consen 678 CRMYNGSDTQYYKCAQALEKFFLFKLNEL 706 (720)
T ss_pred hhccCCccchheecccchhhhhcchhhhh
Confidence 99999999999999999999999988765
No 41
>KOG1827|consensus
Probab=99.46 E-value=1.7e-13 Score=126.75 Aligned_cols=112 Identities=38% Similarity=0.609 Sum_probs=105.9
Q ss_pred CCCCC-CCHHHHHHHHHHHHHHhcccccCCCcccccCccCCCCCCCchhhhhcCCCCcHHHHHHHHhcCCCCCHHHHHHH
Q psy1228 73 RGKYL-DNKPLKRRLYTLCKCLMDYRDQDGRQPMLMFMELPSAKIYPEYYKVIKQPIDMCQIESNIQNEKYRSQDEILSD 151 (202)
Q Consensus 73 r~~~~-~~~~l~~~l~~il~~l~~~~~~~~~~~~~~F~~pv~~~~~pdY~~iIk~PMdL~tIk~kl~~~~Y~s~~eF~~D 151 (202)
++.++ ....+..+++.++..+.++++..|+++...|.+.+++...|+||.+|.+||+|..|++|+..+.|.+.+.|..|
T Consensus 43 ~~d~p~i~~~~~~~f~~il~~~~~~~d~~gk~~~d~feklp~~~~~p~yy~~i~~pisl~~ik~kv~k~~y~~~~~f~~D 122 (629)
T KOG1827|consen 43 RDDSPVIDPPLIPKFKTILASLLDLKDDEGKQLFDKFEKLPSRKEFPEYYYVIQQPISLDQIKRKVKKGRYKRLSFFQLD 122 (629)
T ss_pred CCCccccChHHHHHHHHHHHHHHhhccccCcccchhHhhccccccCCCcceeecCcccHHHHHHHHHhcccccHHHHHHH
Confidence 34444 47888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHH
Q psy1228 152 FRLMFGNCREFNEPGSLIYEDAVNLEKVLLERV 184 (202)
Q Consensus 152 v~lif~Na~~YN~~~s~i~~~A~~L~~~f~~~~ 184 (202)
+.+|+.||..||.+++.++++|..|+..|..+.
T Consensus 123 ~~lm~ena~~~n~~ds~~~~~s~~l~~~~~~~~ 155 (629)
T KOG1827|consen 123 FLLMTENARLYNRPDSLIYKDSGELEKYFISLE 155 (629)
T ss_pred HHHHHHHHHHhcCcchhhhhhhhhhhcchhhhh
Confidence 999999999999999999999999999998865
No 42
>KOG0386|consensus
Probab=99.42 E-value=4.5e-13 Score=128.13 Aligned_cols=106 Identities=38% Similarity=0.727 Sum_probs=102.5
Q ss_pred HHHHHHHHHHhcccccCCCcccccCccCCCCCCCchhhhhcCCCCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhC
Q psy1228 84 RRLYTLCKCLMDYRDQDGRQPMLMFMELPSAKIYPEYYKVIKQPIDMCQIESNIQNEKYRSQDEILSDFRLMFGNCREFN 163 (202)
Q Consensus 84 ~~l~~il~~l~~~~~~~~~~~~~~F~~pv~~~~~pdY~~iIk~PMdL~tIk~kl~~~~Y~s~~eF~~Dv~lif~Na~~YN 163 (202)
+.+..|+....++.+..||.++..|...|+...+||||.+|+.||++..|+++++++.|.+..+...|+.++|.||.+||
T Consensus 1027 ~~~~~i~~~~~~~~~~~~r~~~~~~~~~~s~k~~~d~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~na~~~~ 1106 (1157)
T KOG0386|consen 1027 KQALKIASTSIKYKDSAGRELSEVFLKLPSRKEYPDYYEIIKKPVAIDKIKKRIENHKYNSLKELEKDFMLLFNNARTYN 1106 (1157)
T ss_pred HHHHHHHHHHHhcccccccccchhcccCcccccccchHHHhcchhhHHHHhhhccccccchHHHHHHHHHhhcchhhhhc
Confidence 77899999999999989999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhCC
Q psy1228 164 EPGSLIYEDAVNLEKVLLERVAELGP 189 (202)
Q Consensus 164 ~~~s~i~~~A~~L~~~f~~~~~~i~~ 189 (202)
..||.+|..|..|+.++.....++..
T Consensus 1107 ~egs~~y~d~~~l~~~~~~~~~~~~~ 1132 (1157)
T KOG0386|consen 1107 EEGSRVYEDAIVLQSVFKSARQEISK 1132 (1157)
T ss_pred cCCceechhHHHHHHHHhhhHHHHhc
Confidence 99999999999999999999888765
No 43
>KOG0955|consensus
Probab=99.31 E-value=3.8e-12 Score=123.94 Aligned_cols=107 Identities=23% Similarity=0.434 Sum_probs=97.6
Q ss_pred CHHHHHHHHHHHHHHhcccccCCCcccccCccCCCCCCCchhhhhcCCCCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q psy1228 79 NKPLKRRLYTLCKCLMDYRDQDGRQPMLMFMELPSAKIYPEYYKVIKQPIDMCQIESNIQNEKYRSQDEILSDFRLMFGN 158 (202)
Q Consensus 79 ~~~l~~~l~~il~~l~~~~~~~~~~~~~~F~~pv~~~~~pdY~~iIk~PMdL~tIk~kl~~~~Y~s~~eF~~Dv~lif~N 158 (202)
..+..+.++.+++.+...+. ...|..||+..++|||.++|++||||.+|+.+++++.|.++++|..|+.+|..|
T Consensus 563 l~p~~kLl~~~l~~lq~kD~------~gif~~pvd~~e~pdy~~iik~pmd~~t~~~kl~s~~y~tle~ieed~~l~~~n 636 (1051)
T KOG0955|consen 563 LNPFKKLLQKSLDKLQKKDS------YGIFAEPVDPSELPDYIDIIKKPMDFFTMRLKLESGAYSTLEPIEEDVNLIVSN 636 (1051)
T ss_pred CchHHHHHHHHHHHhhcccc------cCceeeccChhhcccHHHHhcCccchhhhhhhccccchhhhhHHHHhHhHhHhH
Confidence 34667778888888888876 899999999999999999999999999999999999999999999999999999
Q ss_pred HhhhCCCCCHHHHHHHHHHHHHHHHHHHhCCCC
Q psy1228 159 CREFNEPGSLIYEDAVNLEKVLLERVAELGPLP 191 (202)
Q Consensus 159 a~~YN~~~s~i~~~A~~L~~~f~~~~~~i~~~~ 191 (202)
|+.||..++.+++.|..+++.....+.++.-.+
T Consensus 637 c~~yn~~dtv~~r~av~~~e~~~~~~~~arke~ 669 (1051)
T KOG0955|consen 637 CMEYNAKDTVYYRAAVRLRELIKKDFRNARKEP 669 (1051)
T ss_pred HHHhhccCeehHhhhHHHHhhhhhHHHhcccch
Confidence 999999999999999999999998886654443
No 44
>cd05494 Bromodomain_1 Bromodomain; uncharacterized subfamily. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.29 E-value=1.7e-12 Score=97.39 Aligned_cols=77 Identities=21% Similarity=0.163 Sum_probs=55.7
Q ss_pred HHHHHHHHHhcccccCCCcccccCccCCCC--CCCchhhhhcCCCCcHHHHHHHHhcCCC-------CCHHHHHHHHHHH
Q psy1228 85 RLYTLCKCLMDYRDQDGRQPMLMFMELPSA--KIYPEYYKVIKQPIDMCQIESNIQNEKY-------RSQDEILSDFRLM 155 (202)
Q Consensus 85 ~l~~il~~l~~~~~~~~~~~~~~F~~pv~~--~~~pdY~~iIk~PMdL~tIk~kl~~~~Y-------~s~~eF~~Dv~li 155 (202)
.|..++..|.++.. +..++||..||++ ..+|||+++|++||||+||+++|.++.+ ..-....+++..+
T Consensus 4 ~~~~~l~~l~~~~~---~~~~~pF~~PVd~~~~~~pdY~~iIK~PMDL~ti~~kl~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (114)
T cd05494 4 ALERVLRELKRHRR---NEDAWPFLEPVNPPRRGAPDYRDVIKRPMSFGTKVNNIVETGARDLEDLQIVQEDPADKQIDD 80 (114)
T ss_pred HHHHHHHHHHHhhh---CCCCCCcCCCCCchhcCCCChhhhcCCCCChHHHHHHHHcccccccccccccccccccccccc
Confidence 34444444444442 2239999999999 8899999999999999999999999744 3334455566666
Q ss_pred HHHHhhhCC
Q psy1228 156 FGNCREFNE 164 (202)
Q Consensus 156 f~Na~~YN~ 164 (202)
+.||..+|.
T Consensus 81 ~~~~~~~~~ 89 (114)
T cd05494 81 EGRRSPSNI 89 (114)
T ss_pred ccccCcccc
Confidence 666666654
No 45
>cd05491 Bromo_TBP7_like Bromodomain; TBP7_like subfamily, limited to fungi. TBP7, or TAT-binding protein homolog 7, is a yeast protein of unknown function that contains AAA-superfamily ATP-ase domains and a bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.26 E-value=1.4e-11 Score=92.11 Aligned_cols=41 Identities=17% Similarity=0.352 Sum_probs=39.3
Q ss_pred CCCCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCC
Q psy1228 125 KQPIDMCQIESNIQNEKYRSQDEILSDFRLMFGNCREFNEP 165 (202)
Q Consensus 125 k~PMdL~tIk~kl~~~~Y~s~~eF~~Dv~lif~Na~~YN~~ 165 (202)
-.||||+||++||.+|.|.++++|++||+|||.||..||.+
T Consensus 62 ~y~MDL~tIe~RL~ng~Y~tp~~F~~DiklI~~Nc~~ynd~ 102 (119)
T cd05491 62 FYNMDLDTIEERLWNGYYATPKDFLKDIKRIVRDAKTIGDR 102 (119)
T ss_pred EeccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCH
Confidence 35899999999999999999999999999999999999986
No 46
>KOG0008|consensus
Probab=99.17 E-value=2.7e-11 Score=118.48 Aligned_cols=93 Identities=31% Similarity=0.455 Sum_probs=80.5
Q ss_pred HHHHHHHHhcccccCCCcccccCccCCCCCCCchhhhhcCCCCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCC
Q psy1228 86 LYTLCKCLMDYRDQDGRQPMLMFMELPSAKIYPEYYKVIKQPIDMCQIESNIQNEKYRSQDEILSDFRLMFGNCREFNEP 165 (202)
Q Consensus 86 l~~il~~l~~~~~~~~~~~~~~F~~pv~~~~~pdY~~iIk~PMdL~tIk~kl~~~~Y~s~~eF~~Dv~lif~Na~~YN~~ 165 (202)
+-.++.++.+... +|+|++||+++-+|+||.+|++||||.+|.+++...+|.+..||.+||++|+.||+.||+.
T Consensus 1387 ~d~~vs~~~~ipe------s~~f~~~v~~k~~~~yy~kik~pmdl~~i~~n~~~~~y~s~~e~l~dv~~i~~n~~~~ng~ 1460 (1563)
T KOG0008|consen 1387 LDNIVSQMKEIPE------SWPFHEPVNKKRVPDYYKKIKNPMDLETILKNIPPHKYDSRSEFLDDVNLIYVNSVEYNGA 1460 (1563)
T ss_pred hhhHHHHHHhcch------hcccccccchhhchHHHHHhcChhhHHHHhhcCCccccccHHHHhhhhHhhcccceeecCc
Confidence 3344444444445 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q psy1228 166 GSLIYEDAVNLEKVLLERV 184 (202)
Q Consensus 166 ~s~i~~~A~~L~~~f~~~~ 184 (202)
.+.+..-|+.+-++....+
T Consensus 1461 e~~y~~k~~k~~ev~~~~~ 1479 (1563)
T KOG0008|consen 1461 ESAYTKKARKIGEVGLANL 1479 (1563)
T ss_pred cccccHHHHHHHHHHHHHH
Confidence 9988888887776666554
No 47
>KOG0008|consensus
Probab=99.17 E-value=5.1e-11 Score=116.61 Aligned_cols=114 Identities=20% Similarity=0.355 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHHHHhcccccCCCcccccCccCCCCCCCchhhhhcCCCCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q psy1228 80 KPLKRRLYTLCKCLMDYRDQDGRQPMLMFMELPSAKIYPEYYKVIKQPIDMCQIESNIQNEKYRSQDEILSDFRLMFGNC 159 (202)
Q Consensus 80 ~~l~~~l~~il~~l~~~~~~~~~~~~~~F~~pv~~~~~pdY~~iIk~PMdL~tIk~kl~~~~Y~s~~eF~~Dv~lif~Na 159 (202)
..+.-.+..|.+.+....+ ..+|..||+...+++||.||+.||||+++++.+....|.+-++|+.|+.||++|.
T Consensus 1260 V~~ss~l~~i~n~~~~~~~------t~~f~~Pv~~k~v~dyy~vi~~P~~lq~~kk~v~kr~y~~r~~fle~~~~~~~ns 1333 (1563)
T KOG0008|consen 1260 VSLSSILETIINQARSSPN------TYPFPTPVNAKEVKDYYRVITPPMDLQTQKKLVRKRLYESREHFLEELPLIVSNS 1333 (1563)
T ss_pred eecccchHHHHHHHhcCCC------CcCCCCccchhhccchhhccCCCcchHHHHHHHHHHHHHHHHHHHHHhHHHhhch
Confidence 3445567788888888887 9999999999999999999999999999999999999999999999999999999
Q ss_pred hhhCCCCCHHHHHHHHHHHHHHHHH-----------HHhCCCCCCccchhc
Q psy1228 160 REFNEPGSLIYEDAVNLEKVLLERV-----------AELGPLPSGEDFFIL 199 (202)
Q Consensus 160 ~~YN~~~s~i~~~A~~L~~~f~~~~-----------~~i~~~~~~~~~~~~ 199 (202)
.+||++-+.+...|..+....-..| ++|.+..++++.+-+
T Consensus 1334 ~~yng~~~~~t~~~q~mls~~~~~~~ekedk~~~lEk~Inplld~~d~v~~ 1384 (1563)
T KOG0008|consen 1334 TKYNGPLASLTRQQQSMLSLCFEKLKEKEDKLWRLEKAINPLLDDDDQVAF 1384 (1563)
T ss_pred hhhcCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHhhcCcccCccchhhH
Confidence 9999999999988888766655544 578888888887665
No 48
>KOG1472|consensus
Probab=98.83 E-value=2.8e-09 Score=100.56 Aligned_cols=63 Identities=30% Similarity=0.605 Sum_probs=61.0
Q ss_pred cccCccCCCCCCCchhhhhcCCCCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCC
Q psy1228 105 MLMFMELPSAKIYPEYYKVIKQPIDMCQIESNIQNEKYRSQDEILSDFRLMFGNCREFNEPGS 167 (202)
Q Consensus 105 ~~~F~~pv~~~~~pdY~~iIk~PMdL~tIk~kl~~~~Y~s~~eF~~Dv~lif~Na~~YN~~~s 167 (202)
+++|..+|++..+|+||.||+.||||.++.+|+..+.|.+.++|+.|+.+||.||..||...+
T Consensus 304 s~~~~~kvs~~~a~~y~~i~k~pmdl~t~~~k~~~~~y~~~~~fv~d~~~~~~n~~~~n~ee~ 366 (720)
T KOG1472|consen 304 STPFLEKVSKEDAPNYYQIIKAPMDLSTELKKLKSGPYCSKEEFVNDLMLIWRNCEKYNSEES 366 (720)
T ss_pred ccccccCCChhhCcchHHhhhcchHHHHHHHHhccccccchhHHHHHHHHHHhcchhhccccc
Confidence 999999999999999999999999999999999999999999999999999999999997644
No 49
>KOG1474|consensus
Probab=98.64 E-value=9.9e-09 Score=97.21 Aligned_cols=96 Identities=28% Similarity=0.494 Sum_probs=87.4
Q ss_pred CCcccccCccCCCCC--CCchhhhhcCCCCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHH
Q psy1228 101 GRQPMLMFMELPSAK--IYPEYYKVIKQPIDMCQIESNIQNEKYRSQDEILSDFRLMFGNCREFNEPGSLIYEDAVNLEK 178 (202)
Q Consensus 101 ~~~~~~~F~~pv~~~--~~pdY~~iIk~PMdL~tIk~kl~~~~Y~s~~eF~~Dv~lif~Na~~YN~~~s~i~~~A~~L~~ 178 (202)
.+.++|+|..||+.. ..|+||.+|++|||+++|+.++.++.|.+..+-.+|+..+|.||..||.++..+..++..++.
T Consensus 6 ~~~~~~~f~~~v~~v~l~~~~~~~~~~~~~d~~~~~~~~e~n~~~~~~~~~~~f~~~~sn~~~~~~~~~~v~~~~~~~~~ 85 (640)
T KOG1474|consen 6 KHKLAWPFLEPVDAVALNLPAYYEIIKRPMDIGTIEKRVENNYYFSASECIADFKTKFSNCYLFNDSGDDVVRMKQSLEK 85 (640)
T ss_pred cccccccccCccchhhccchhhhcccCCCCCchhhhhhhccCccccHhhhhhhccccccchhcccCCccchhhccccchh
Confidence 345699999999964 489999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCccc
Q psy1228 179 VLLERVAELGPLPSGEDF 196 (202)
Q Consensus 179 ~f~~~~~~i~~~~~~~~~ 196 (202)
.|.+....++....+...
T Consensus 86 ~~~~~~~~~~~~~~d~~~ 103 (640)
T KOG1474|consen 86 LFPKKLRSMPSDEEDKSS 103 (640)
T ss_pred hcccccccccccccCCcc
Confidence 999998888777666543
No 50
>KOG1828|consensus
Probab=98.60 E-value=6.3e-09 Score=91.26 Aligned_cols=96 Identities=21% Similarity=0.190 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHhcccccCCCcccccCccCCCCCCCchhhhhcCCCCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhh
Q psy1228 83 KRRLYTLCKCLMDYRDQDGRQPMLMFMELPSAKIYPEYYKVIKQPIDMCQIESNIQNEKYRSQDEILSDFRLMFGNCREF 162 (202)
Q Consensus 83 ~~~l~~il~~l~~~~~~~~~~~~~~F~~pv~~~~~pdY~~iIk~PMdL~tIk~kl~~~~Y~s~~eF~~Dv~lif~Na~~Y 162 (202)
......++..+.+... -..|..||.....|+|.+||+.|||+.|++.|++.++|.++.+|..|.+++..||..|
T Consensus 21 ~~~~ehhlrkl~sKdp------~q~fafplt~~map~y~~iis~Pmd~~t~r~kidd~~yl~L~~m~~d~kl~~~na~~y 94 (418)
T KOG1828|consen 21 SGDAEHHLRKLPSKDP------KQKFAFPLTDKMAPNYLEIISEPMDRITKRSKIDDTRYLVLSQMEFDRKLPDGNATLY 94 (418)
T ss_pred hhhHHHHHHhccccCh------hhhhccccchhhccchHhhhhcccccccccccCCCccceechhhhhhhcccccchhhh
Confidence 3344455555555443 6778889999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHH
Q psy1228 163 NEPGSLIYEDAVNLEKVLLERV 184 (202)
Q Consensus 163 N~~~s~i~~~A~~L~~~f~~~~ 184 (202)
|...+.++..|++|..+-....
T Consensus 95 n~~~Tv~~~aaKrL~~v~~~~~ 116 (418)
T KOG1828|consen 95 NLHPTVPIVAAKRLCPVRLGMT 116 (418)
T ss_pred hcCCccccccccccchhhcchh
Confidence 9999999999999987655543
No 51
>KOG1828|consensus
Probab=98.40 E-value=2.2e-07 Score=81.66 Aligned_cols=86 Identities=16% Similarity=0.040 Sum_probs=74.6
Q ss_pred HHHHHHHHhcccccCCCcccccCccCCCCCCCchhhhhcCCCCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCC
Q psy1228 86 LYTLCKCLMDYRDQDGRQPMLMFMELPSAKIYPEYYKVIKQPIDMCQIESNIQNEKYRSQDEILSDFRLMFGNCREFNEP 165 (202)
Q Consensus 86 l~~il~~l~~~~~~~~~~~~~~F~~pv~~~~~pdY~~iIk~PMdL~tIk~kl~~~~Y~s~~eF~~Dv~lif~Na~~YN~~ 165 (202)
+....+++..... ...|..+|....+|.|..+|++|++..|+++|..++.|.| -+|.+|..+|+-||++||.+
T Consensus 213 ~~~q~~kl~~~~p------~~~lnyg~tas~aP~YSm~Ik~~~~~~Tygdk~~andy~S-~~f~~D~kl~~l~amT~geh 285 (418)
T KOG1828|consen 213 QTLQEDKLNRVDP------VAYLNYGPTASFAPGYSMTITEVEPPGTYGDKSSANDYES-LSFTQDRKLIALKAVTNGEH 285 (418)
T ss_pred HHHHHHHhcccCc------hhhhcccchhhhcccccccccccCCCcchhhhhhhhhhhh-hhhhcccchhhHHHHhcCCc
Confidence 3334444444444 7889999999999999999999999999999999999999 99999999999999999999
Q ss_pred CCHHHHHHHHHHH
Q psy1228 166 GSLIYEDAVNLEK 178 (202)
Q Consensus 166 ~s~i~~~A~~L~~ 178 (202)
...++..|+.+..
T Consensus 286 sk~yyelank~lh 298 (418)
T KOG1828|consen 286 SKSYYELANKQLH 298 (418)
T ss_pred chHHHHHHHhhhh
Confidence 9999998876654
No 52
>cd05493 Bromo_ALL-1 Bromodomain, ALL-1 like proteins. ALL-1 is a vertebrate homologue of Drosophila trithorax and is often affected in chromosomal rearrangements that are linked to acute leukemias, such as acute lymphocytic leukemia (ALL). Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=97.61 E-value=0.00015 Score=55.40 Aligned_cols=69 Identities=13% Similarity=0.167 Sum_probs=59.8
Q ss_pred CCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCCcc
Q psy1228 127 PIDMCQIESNIQNEKYRSQDEILSDFRLMFGNCREFNEPGSLIYEDAVNLEKVLLERVAELGPLPSGED 195 (202)
Q Consensus 127 PMdL~tIk~kl~~~~Y~s~~eF~~Dv~lif~Na~~YN~~~s~i~~~A~~L~~~f~~~~~~i~~~~~~~~ 195 (202)
|-||..|++|+++|.|+++.+|.+||-.|+.-++.=.+....+-++-..+..+|.++++++++...-.+
T Consensus 59 p~dL~~V~kkl~~G~Y~sv~~F~~DvvkIiqa~l~~e~~~pe~~ka~s~~Ksf~ik~me~vf~Wf~~~d 127 (131)
T cd05493 59 PLDLEAVGKKLEAGFYTSVLDFSDDIVKIIQAALNSEGGQPEIKKANSMAKSFFIKLMESVFPWFNSED 127 (131)
T ss_pred cccHHHHHHHHhccceehHHHHHHHHHHHHHHHHhhccCCccccCcchHHHHHHHHHHHHhcccccccC
Confidence 899999999999999999999999999999999877766666666677888999999999988755443
No 53
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=97.45 E-value=5.1e-05 Score=67.66 Aligned_cols=87 Identities=26% Similarity=0.502 Sum_probs=80.8
Q ss_pred cccccCccCCCCCCCchhhhhcCCCCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHH
Q psy1228 103 QPMLMFMELPSAKIYPEYYKVIKQPIDMCQIESNIQNEKYRSQDEILSDFRLMFGNCREFNEPGSLIYEDAVNLEKVLLE 182 (202)
Q Consensus 103 ~~~~~F~~pv~~~~~pdY~~iIk~PMdL~tIk~kl~~~~Y~s~~eF~~Dv~lif~Na~~YN~~~s~i~~~A~~L~~~f~~ 182 (202)
.-+|+|..+++....|+|+++|..+|++.+.+.++..+.|....+|..|..+++.||..||+....++..+..+.+.+..
T Consensus 279 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (371)
T COG5076 279 VGAWPFLRPVSDEEVPDYYKDIRDPMDLSTKELKLRNNYYRPEETFVRDAKLFFDNCVMYNGEVTDYYKNANVLEDFVIK 358 (371)
T ss_pred cccccccccCCcccccchhhhhhcccccccchhhhhcccCCCccccccccchhhhcccccchhhhhhhhhccchhhhHhh
Confidence 34899999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHhCC
Q psy1228 183 RVAELGP 189 (202)
Q Consensus 183 ~~~~i~~ 189 (202)
.+.-...
T Consensus 359 ~~~~~~~ 365 (371)
T COG5076 359 KTRLIRE 365 (371)
T ss_pred hhhhhhc
Confidence 7765533
No 54
>KOG0644|consensus
Probab=95.40 E-value=0.011 Score=57.09 Aligned_cols=61 Identities=21% Similarity=0.301 Sum_probs=54.3
Q ss_pred cCCCCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHH
Q psy1228 124 IKQPIDMCQIESNIQNEKYRSQDEILSDFRLMFGNCREFNEPGSLIYEDAVNLEKVLLERV 184 (202)
Q Consensus 124 Ik~PMdL~tIk~kl~~~~Y~s~~eF~~Dv~lif~Na~~YN~~~s~i~~~A~~L~~~f~~~~ 184 (202)
-.-|..|..|..+|++..|++.+.|..|+..|..||.+|.+.+..+...+..|...|...+
T Consensus 1050 fpvpls~evi~~rlEn~yYrs~e~~~hdvs~mlsnae~~fg~~~~~~~ki~~l~~~~~~Tl 1110 (1113)
T KOG0644|consen 1050 FPVPLSLEVIRSRLENNYYRSQEALRHDVSVMLSNAETFFGRNKNVAIKISFLSPWFDRTL 1110 (1113)
T ss_pred CCCcccHHHHHHHHHhhhhhhhHhhhcchhhhhcccceeecccccHHHHhhhcchhhhhhc
Confidence 4568999999999999999999999999999999999999988888888888888776654
No 55
>KOG0732|consensus
Probab=88.65 E-value=0.18 Score=50.52 Aligned_cols=62 Identities=15% Similarity=0.120 Sum_probs=54.8
Q ss_pred cccCccCCCCCC-----CchhhhhcCCCCcHHHHHHHHhcCCCCCHHHHHH--HHHHHHHHHhhhCCCC
Q psy1228 105 MLMFMELPSAKI-----YPEYYKVIKQPIDMCQIESNIQNEKYRSQDEILS--DFRLMFGNCREFNEPG 166 (202)
Q Consensus 105 ~~~F~~pv~~~~-----~pdY~~iIk~PMdL~tIk~kl~~~~Y~s~~eF~~--Dv~lif~Na~~YN~~~ 166 (202)
+..|-.|++... .++|-.+|+++||+.....++..+.|.++.+|.. ++.|||.|++.||+..
T Consensus 533 ~~~~s~Pl~~~~~~ll~~~~~~~~iq~~~~va~~~~k~~e~~~~~v~~~e~~~~i~lic~~~lli~~~~ 601 (1080)
T KOG0732|consen 533 SVIFSRPLSTYLKPLLPFQDALEDIQGLMDVASSMAKIEEHLKLLVRSFESNFAIRLICRPRLLINGGK 601 (1080)
T ss_pred ccCCCCCCCcceecccchHHHHHHhhcchhHHhhhhhHHHHhHHHHHhhhcccchhhhcCcHHhcCCCc
Confidence 566667776443 5689999999999999999999999999999999 9999999999999864
No 56
>KOG0644|consensus
Probab=88.03 E-value=0.14 Score=49.92 Aligned_cols=75 Identities=13% Similarity=0.182 Sum_probs=59.2
Q ss_pred cCccCCCCCCCchhhhhcCCCCcHHHHHHHHhcCCC--------------C----------CHHH------HHHHHHHHH
Q psy1228 107 MFMELPSAKIYPEYYKVIKQPIDMCQIESNIQNEKY--------------R----------SQDE------ILSDFRLMF 156 (202)
Q Consensus 107 ~F~~pv~~~~~pdY~~iIk~PMdL~tIk~kl~~~~Y--------------~----------s~~e------F~~Dv~lif 156 (202)
.|.-+++....|.|..+...|.+|+|+++.|.+..| . ++.+ ..+-+.+|-
T Consensus 85 qlv~~~d~~~pp~~~~~a~vpTlLgtg~qsLl~r~k~~~~~~~~~s~~~~~h~~~~~~~~~sl~s~~~~~~~h~~a~~i~ 164 (1113)
T KOG0644|consen 85 QLVPMLDKPIPPRYCTIARVPTLLGTGRQSLLRRAKDIRHTVWKGSAFRWPHMHADQVRGVSLRSIGGGFEIHHRAPSIG 164 (1113)
T ss_pred HhccCcCCCCCcceeeeecccchhcchhHHHHhhhhhcccccccccccccccccCcccccceeccCCcchhhhhcCcccc
Confidence 344566777889999999999999999999998777 2 3333 566788899
Q ss_pred HHHhhhCCCCCHHHHHHHHHHHHHHH
Q psy1228 157 GNCREFNEPGSLIYEDAVNLEKVLLE 182 (202)
Q Consensus 157 ~Na~~YN~~~s~i~~~A~~L~~~f~~ 182 (202)
+||..++.|++ +++.++.+.++.-.
T Consensus 165 ~at~~~akPgt-mvqkmk~ikrLlgH 189 (1113)
T KOG0644|consen 165 CATFSIAKPGT-MVQKMKNIKRLLGH 189 (1113)
T ss_pred cceeeecCcHH-HHHHHHHHHHHHhh
Confidence 99999999999 77777766665443
No 57
>KOG1827|consensus
Probab=85.62 E-value=0.086 Score=49.97 Aligned_cols=75 Identities=12% Similarity=0.120 Sum_probs=69.8
Q ss_pred cccCccCCCCCCCchhhhhcCCCCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHH
Q psy1228 105 MLMFMELPSAKIYPEYYKVIKQPIDMCQIESNIQNEKYRSQDEILSDFRLMFGNCREFNEPGSLIYEDAVNLEKV 179 (202)
Q Consensus 105 ~~~F~~pv~~~~~pdY~~iIk~PMdL~tIk~kl~~~~Y~s~~eF~~Dv~lif~Na~~YN~~~s~i~~~A~~L~~~ 179 (202)
...|+..++...+|+||.+++-||.+....+++..++|.....|..|..+.+.|+..|+.+..-++..+..+.+.
T Consensus 213 Ier~w~~~dg~k~~~~~w~~rP~~T~H~a~r~F~k~Evfkt~~~~~~~~q~l~g~c~v~~~~~yi~~~p~~ls~~ 287 (629)
T KOG1827|consen 213 IERLWKLPDGEKWPQGCWIYRPEETVHRADRKFYKQEVFKTSLYRDDLVQRLLGKCYVMKPTEYISGDPENLSEE 287 (629)
T ss_pred ecccccCcccccccceeEeeCCccCccccccchhcccceecccccccHHHHhhcceEEeehhHhhhcCccccccc
Confidence 677888899999999999999999999999999999999999999999999999999999999998888877654
No 58
>TIGR02606 antidote_CC2985 putative addiction module antidote protein, CC2985 family. This bacterial protein family has a very similar seed alignment to that of Pfam model pfam03693 but is a more stringent model with higher cutoff scores. Proteins that score above the trusted cutoff to this model almost invariably are found adjacent to a ParE family protein (pfam05016), where ParE is the killing partner of an addiction module for plasmid stabilization. Members of this family, therefore, are putative addiction module antidote proteins. Some are encoded on plasmids or in prophage regions, but others appear chromosomal. A genome may contain several identical copies, such as the four in Magnetococcus sp. MC-1. This family is named for one member, CC2985 of Caulobacter crescentus CB15.
Probab=77.85 E-value=3.9 Score=27.63 Aligned_cols=28 Identities=21% Similarity=0.345 Sum_probs=24.7
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q psy1228 131 CQIESNIQNEKYRSQDEILSDFRLMFGN 158 (202)
Q Consensus 131 ~tIk~kl~~~~Y~s~~eF~~Dv~lif~N 158 (202)
.-|+.+++.|.|.|..|++++...++.-
T Consensus 12 ~~i~~~V~sG~Y~s~SEVir~aLR~le~ 39 (69)
T TIGR02606 12 SFIRSQVQSGRYGSASEVVRAALRLLEE 39 (69)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHH
Confidence 5689999999999999999998887754
No 59
>PF14372 DUF4413: Domain of unknown function (DUF4413)
Probab=74.56 E-value=18 Score=26.08 Aligned_cols=49 Identities=8% Similarity=0.106 Sum_probs=41.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHhC
Q psy1228 140 EKYRSQDEILSDFRLMFGNCREFNEPGSLIYEDAVNLEKVLLERVAELG 188 (202)
Q Consensus 140 ~~Y~s~~eF~~Dv~lif~Na~~YN~~~s~i~~~A~~L~~~f~~~~~~i~ 188 (202)
..|.|..-|...+..|-.....++..+..+..+|..|.+.|.+.|++..
T Consensus 4 ~~~pTsn~~f~~i~~i~~~l~~~~~~d~~l~~ma~~M~~KfdKYw~~~~ 52 (101)
T PF14372_consen 4 SSYPTSNLYFHEIWKIKDLLRDWNNDDPDLKNMAKKMKEKFDKYWKDCN 52 (101)
T ss_pred CCcCcHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhH
Confidence 4688888888888888777777777788999999999999999998654
No 60
>PF03693 RHH_2: Uncharacterised protein family (UPF0156); InterPro: IPR022789 This family of proteins are about 80 amino acids in length and their function is unknown. The proteins contain a conserved GRY motif. This family appears to be related to ribbon-helix-helix DNA-binding proteins. ; PDB: 3KXE_C.
Probab=67.87 E-value=8.2 Score=26.90 Aligned_cols=27 Identities=19% Similarity=0.378 Sum_probs=22.2
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHH
Q psy1228 131 CQIESNIQNEKYRSQDEILSDFRLMFG 157 (202)
Q Consensus 131 ~tIk~kl~~~~Y~s~~eF~~Dv~lif~ 157 (202)
.-|+.++.+|.|.|..|+++|.-.++.
T Consensus 15 ~~i~~~V~sG~Y~s~SEvvR~aLRlle 41 (80)
T PF03693_consen 15 AFIEEQVASGRYSSASEVVREALRLLE 41 (80)
T ss_dssp HHHHHHHCTTS-SSHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 458999999999999999999766654
No 61
>KOG0995|consensus
Probab=60.15 E-value=51 Score=31.30 Aligned_cols=31 Identities=16% Similarity=0.161 Sum_probs=24.2
Q ss_pred cHHHHHHHHhcC---CCCCHHHHHHHHHHHHHHH
Q psy1228 129 DMCQIESNIQNE---KYRSQDEILSDFRLMFGNC 159 (202)
Q Consensus 129 dL~tIk~kl~~~---~Y~s~~eF~~Dv~lif~Na 159 (202)
|+..|-+-|-+. .|..+.-|..||-+||.|-
T Consensus 104 dF~~iFkfLY~~Ldp~y~f~~r~EeEV~~ilK~L 137 (581)
T KOG0995|consen 104 DFIAIFKFLYGFLDPDYEFPERIEEEVVQILKNL 137 (581)
T ss_pred cHHHHHHHHHhccCCCcccchhHHHHHHHHHHhC
Confidence 666676666654 6888889999999999874
No 62
>PF09066 B2-adapt-app_C: Beta2-adaptin appendage, C-terminal sub-domain; InterPro: IPR015151 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. This entry represents a subdomain of the appendage (ear) domain of beta-adaptin from AP clathrin adaptor complexes. This domain has a three-layer arrangement, alpha-beta-alpha, with a bifurcated antiparallel beta-sheet []. This domain is required for binding to clathrin, and its subsequent polymerisation. Furthermore, a hydrophobic patch present in the domain also binds to a subset of D-phi-F/W motif-containing proteins that are bound by the alpha-adaptin appendage domain (epsin, AP180, eps15) []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 1E42_B 2G30_A 2IV9_B 2IV8_A 3HS9_A 3H1Z_A.
Probab=47.90 E-value=9.5 Score=27.80 Aligned_cols=23 Identities=35% Similarity=0.615 Sum_probs=17.5
Q ss_pred ccccccCcccccCceeeeeehhh
Q psy1228 7 GTFCMASKRVTTGQTVFYYYIFK 29 (202)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~ 29 (202)
+.||||+|-+.+++.+||++...
T Consensus 49 nI~~iA~~~~~~~~~~~y~s~~~ 71 (114)
T PF09066_consen 49 NIFTIASGKVDNGQKFFYFSAKT 71 (114)
T ss_dssp T-EEEEEEECTT-EEEEEEEEEB
T ss_pred CEEEEecCCCCccccEEEEEEEc
Confidence 67999999999988888886543
No 63
>PRK10991 fucI L-fucose isomerase; Provisional
Probab=36.50 E-value=78 Score=30.25 Aligned_cols=82 Identities=16% Similarity=0.327 Sum_probs=58.3
Q ss_pred cccCccCCCCCCCchhhhhcCCCCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhh---hCCCC--------CHHHHHH
Q psy1228 105 MLMFMELPSAKIYPEYYKVIKQPIDMCQIESNIQNEKYRSQDEILSDFRLMFGNCRE---FNEPG--------SLIYEDA 173 (202)
Q Consensus 105 ~~~F~~pv~~~~~pdY~~iIk~PMdL~tIk~kl~~~~Y~s~~eF~~Dv~lif~Na~~---YN~~~--------s~i~~~A 173 (202)
....-.-+++..+.+|.-+=-.++|+..|.+|++.+.|.. +++.+.+..+-+||.. .|.++ ...+...
T Consensus 183 mGf~ts~vne~~l~~~fGI~ve~VDmsEIirR~~~~~~d~-eE~e~al~wlk~~~~~~~dvn~~~~~~t~e~~~~~le~~ 261 (588)
T PRK10991 183 MGIAGSIVDHNFFESYLGMRVEAVDMTELRRRIDQKIYDE-EELEMALAWAKKNCKEGEDENAEQYQRNAEQKRAVWEES 261 (588)
T ss_pred CCccccccCHHHHHHHhCCEEEEeCHHHHHHHHHhccCCH-HHHHHHHHHHHHhcccccccCchhccccccccHHHHHHH
Confidence 3333345566667789998889999999999999999987 7899999999999864 44422 1334455
Q ss_pred HHHHHHHHHHHHHh
Q psy1228 174 VNLEKVLLERVAEL 187 (202)
Q Consensus 174 ~~L~~~f~~~~~~i 187 (202)
.+|.-.+.+++++-
T Consensus 262 akm~lairdlm~en 275 (588)
T PRK10991 262 VKMAMIIRDLMQGN 275 (588)
T ss_pred HHHHHHHHHHHHhC
Confidence 55555566666544
No 64
>PF09141 Talin_middle: Talin, middle domain; InterPro: IPR015224 This domain adopts a structure consisting of five alpha helices that fold into a bundle. It contains a Vinculin binding site (VBS) composed of a hydrophobic surface spanning five turns of helix four. Activation of the VBS causes subsequent recruitment of Vinculin, which enables maturation of small integrin/talin complexes into more stable adhesions. Formation of the complex between VBS and Vinculin requires prior unfolding of this middle domain: once released from the talin hydrophobic core, the VBS helix is then available to induce the 'bundle conversion' conformational change within the vinculin head domain thereby displacing the intramolecular interaction with the vinculin tail, allowing vinculin to bind actin []. ; GO: 0005200 structural constituent of cytoskeleton, 0007016 cytoskeletal anchoring at plasma membrane, 0001726 ruffle, 0005925 focal adhesion; PDB: 1SJ8_A 1T01_B 1SJ7_A 1SYQ_B.
Probab=29.47 E-value=2.8e+02 Score=21.99 Aligned_cols=60 Identities=17% Similarity=0.215 Sum_probs=44.3
Q ss_pred cHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCC-CCCHHHHHHHHHHHHHHHHHHHhCCCCCCccchh
Q psy1228 129 DMCQIESNIQNEKYRSQDEILSDFRLMFGNCREFNE-PGSLIYEDAVNLEKVLLERVAELGPLPSGEDFFI 198 (202)
Q Consensus 129 dL~tIk~kl~~~~Y~s~~eF~~Dv~lif~Na~~YN~-~~s~i~~~A~~L~~~f~~~~~~i~~~~~~~~~~~ 198 (202)
.+.||-.+| .+..++|+++ +++.=+. .++.+..+|+.|-..|.++++-..|...+....+
T Consensus 86 AittIssnl--------~em~k~vr~l--aaL~d~~~~~~~Ll~Aar~L~~A~sdll~sa~p~~~e~Rq~l 146 (161)
T PF09141_consen 86 AITTISSNL--------PEMAKGVRML--AALMDDEGDGDKLLDAARKLCGAFSDLLKSAEPESKEPRQNL 146 (161)
T ss_dssp HHHHHHHHH--------HHHHHHHHHH--HHHHHHTT--HHHHHHHHHHHHHHHHHHHHTSTTT-SSCHHH
T ss_pred HHHHHHHhh--------HHHHHHHHHH--HHhcCCcccHHHHHHHHHHHHHHHHHHHHhcCCCccccHHHH
Confidence 356777766 6788888887 4454444 6788999999999999999999888877766544
No 65
>KOG0732|consensus
Probab=29.47 E-value=22 Score=36.19 Aligned_cols=50 Identities=14% Similarity=0.242 Sum_probs=42.7
Q ss_pred CCchhhhhcCCC--CcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCC
Q psy1228 116 IYPEYYKVIKQP--IDMCQIESNIQNEKYRSQDEILSDFRLMFGNCREFNEP 165 (202)
Q Consensus 116 ~~pdY~~iIk~P--MdL~tIk~kl~~~~Y~s~~eF~~Dv~lif~Na~~YN~~ 165 (202)
.+.+++.++..| |++..+.+++-.|.|....+|..|+.+|..||..+...
T Consensus 797 ~~~~~v~~l~~~~~~~~~~~~~r~~s~~~~~~~q~l~d~~li~r~a~~~~~~ 848 (1080)
T KOG0732|consen 797 SSDNVVKILQINQMDWLEEILKRVWSGEYSTPKQFLSDIKLILRDASSSEDS 848 (1080)
T ss_pred ccccceeehhhhhhHHHHHHhhcCCcccccccccccccchhhcccchhccCc
Confidence 456777777666 66777899999999999999999999999999998864
No 66
>COG3609 Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain [Transcription]
Probab=28.51 E-value=1.1e+02 Score=21.51 Aligned_cols=31 Identities=16% Similarity=0.299 Sum_probs=24.7
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHh
Q psy1228 130 MCQIESNIQNEKYRSQDEILSDFRLMFGNCR 160 (202)
Q Consensus 130 L~tIk~kl~~~~Y~s~~eF~~Dv~lif~Na~ 160 (202)
..-|...++.|.|.|..+++++-...+.--.
T Consensus 14 ~~~i~~lV~~G~y~s~SeviR~alr~l~~~~ 44 (89)
T COG3609 14 VEFIDELVESGRYKSRSEVIRAALRLLLEKR 44 (89)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 4678999999999999999998666554433
No 67
>PF14061 Mtf2_C: Polycomb-like MTF2 factor 2
Probab=25.78 E-value=33 Score=21.76 Aligned_cols=17 Identities=29% Similarity=0.503 Sum_probs=13.4
Q ss_pred ccccCcccccCceeeee
Q psy1228 9 FCMASKRVTTGQTVFYY 25 (202)
Q Consensus 9 ~~~~~~~~~~~~~~~~~ 25 (202)
|-.-.+|||+.|.++|-
T Consensus 26 ~~VlArRV~~dG~vQYL 42 (50)
T PF14061_consen 26 YRVLARRVTPDGKVQYL 42 (50)
T ss_pred eEEEEEEEcCCCcEEEE
Confidence 34456899999999983
No 68
>PHA02675 ORF104 fusion protein; Provisional
Probab=20.72 E-value=3e+02 Score=19.44 Aligned_cols=53 Identities=17% Similarity=0.318 Sum_probs=34.0
Q ss_pred CCCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy1228 126 QPIDMCQIESNIQNEKYRSQDEILSDFRLMFGNCREFNEPGSLIYEDAVNLEKVLLERVAEL 187 (202)
Q Consensus 126 ~PMdL~tIk~kl~~~~Y~s~~eF~~Dv~lif~Na~~YN~~~s~i~~~A~~L~~~f~~~~~~i 187 (202)
.| .=.+|++||.+ +..++.+++.+|..-+..=..+-..|..|++....+-++|
T Consensus 29 ~~-~~esle~RL~~--------L~k~~~~i~~cC~~~~~~L~RLE~H~ETLRk~Ml~L~KKI 81 (90)
T PHA02675 29 AP-SKESVEERLVS--------LLDSYKTITDCCRETGARLDRLERHLETLREALLKLNTKI 81 (90)
T ss_pred CC-cHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44 56788888844 6688999999998776543334444555555555554544
No 69
>PF14056 DUF4250: Domain of unknown function (DUF4250)
Probab=20.61 E-value=1.4e+02 Score=19.31 Aligned_cols=24 Identities=21% Similarity=0.505 Sum_probs=19.6
Q ss_pred CcHHHHHHHHhcCCCCCHHHHHHHH
Q psy1228 128 IDMCQIESNIQNEKYRSQDEILSDF 152 (202)
Q Consensus 128 MdL~tIk~kl~~~~Y~s~~eF~~Dv 152 (202)
|=|+.|-.||+. +|.|++++..|.
T Consensus 7 mLlS~VN~kLRD-~~~sLd~Lc~~~ 30 (55)
T PF14056_consen 7 MLLSIVNMKLRD-EYSSLDELCYDY 30 (55)
T ss_pred HHHHHHHHHHHh-ccCCHHHHHHHh
Confidence 447788888887 899999998875
Done!